Psyllid ID: psy16652

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIFYAN
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccccccccccEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEEEcccccccEEEEccccEEEcccccEEEEEEEccccccEEEEEEcccccccccccccccccEEEccccEEEEEcccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEccccEEEEcccccEEEEccccEEEEEEEEEEcccEEEEEEccccccccccEEEEccEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEEccEEEEccccEEEEccccEEEEEEEEEEccccEEEEEccEEccccccEEEEEEEccccccccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccccccEEccccEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEEccccccccEEEEccccEEEEcccEEEEEEEcccccccEEEEEEcccEcccccccEEccccEccccccEEEEEcccccccEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEccccEEEcccccEEEEcccEEEEEEEcccccccEEEEEEcccEcccccEEEEcccEEEEEEEEcccccEEEEEEEEccccccHcEEEEEEcccccEEcccccEEEEcccEEEEEEEEccccccEEEEEEcccEccccccccccccccEEEccccEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEccccccccccEEEcc
Coil and Loop (DISEMBL)
fiapspfdfvnrfqntstpwdpstqkpIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLassqrtptisyiSQEQIKDIAQTAdlkcsvqyaddypviWMKMDtakkmeplpismsgsliihdsrfqlttdpetstYILSIKEIqetdagiyKCEVIISLNNKVSAEVElivrrppiisdnstrsviVSEGQTVYLYCYangfpaptiswrrdnsaalstggsiyrgnilkipnitktdrgtyycvaqngvgrgmkrNIAVEvefapvitinrprqgqalQYDAILEChveaypppaivWIKDGvqimnnqhysvshfatsdefsdtsLRVITIERRQFGQYACKAANKYGSAQKEIELFdretqtgdetfpifyan
Flexible Loop (DISEMBL)
fiapspfdfvnrfqntstpwdpstqKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVElivrrppiisdnstrsVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALstggsiyrgnilkipnitktdrgtYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFdretqtgdetfpifyan
Low Complexity Region (SEG)
FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIFYAN
Disordered region (IsUnstruct)
************************QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD*********FPIF***
Disordered Region (DISOPRED)
FIAPSPFDFVNRFQ***************FFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR*V*VSEGQTVYLYCYANGFPAPTISWRRDN**************ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN*************EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET*PIFY**
Disordered Region (DISEMBL)
FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIFYAN
Disordered Region (DISPRO)
FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIFYAN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.794	0.873	0.699	1e-129
Q24372	359	Lachesin OS=Drosophila me	yes	N/A	0.794	0.849	0.605	1e-113
P15364	333	Protein amalgam OS=Drosop	no	N/A	0.812	0.936	0.367	4e-61
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.651	0.007	0.277	1e-21
Q7Z3B1	354	Neuronal growth regulator	no	N/A	0.591	0.641	0.316	3e-21
A2ASS6	35213	Titin OS=Mus musculus GN=	yes	N/A	0.643	0.007	0.278	4e-21
Q5R412	354	Neuronal growth regulator	yes	N/A	0.604	0.655	0.314	4e-21
Q92859	1461	Neogenin OS=Homo sapiens	no	N/A	0.552	0.145	0.304	5e-21
Q8BLK3	341	Limbic system-associated	no	N/A	0.591	0.665	0.310	5e-21
Q98919	338	Limbic system-associated	yes	N/A	0.554	0.630	0.321	2e-20

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 256/306 (83%), Gaps = 1/306 (0%)

Query: 63  LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
             S+  +QRTPTISYISQEQIKDI  T +L+CSVQYA DYPV+WMK+D  ++++PLPIS 
Sbjct: 12  FFSVVYAQRTPTISYISQEQIKDIGGTVELECSVQYAQDYPVLWMKVDRNRQVDPLPIST 71

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
             SLII DSRF L  D  +STY L IK+IQETDAG Y+C+VII LNNK++AEV+L VRRP
Sbjct: 72  GSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQVIIGLNNKITAEVDLQVRRP 131

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
           P+ISDNSTRS++VSEGQ V L CYA G+PAP +SWRR+N+A L TGGSIYRGN+LKI  I
Sbjct: 132 PVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGNVLKISRI 191

Query: 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP 302
            K DRGTYYCVA+NGVG+G +RNIAVEVEF PVIT+ RPR GQALQYD  LECHVEAYPP
Sbjct: 192 GKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYDMDLECHVEAYPP 251

Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
           PAI W+KD   + NNQHYS+SHFAT+DEF+DT+ RVITIE+RQ+G+Y CKAANK G A++
Sbjct: 252 PAITWLKDETVLSNNQHYSISHFATADEFTDTT-RVITIEKRQYGKYQCKAANKLGEARE 310

Query: 363 EIELFD 368
           E+ELF+
Sbjct: 311 EVELFE 316

May play a role in early neuronal differentiation and axon outgrowth.
Schistocerca americana (taxid: 7009)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 241/309 (77%), Gaps = 4/309 (1%)

Query: 60  LSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLP 119
           L+  +    +QRTPTISYI+QEQIKDI  T +  CSVQYA +Y V+++K D+    +P+ 
Sbjct: 16  LAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDCSVQYAKEYNVLFLKTDS----DPVF 71

Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           +S   +L+I DSRF L  DP +STY L IK+IQETDAG Y C+V+IS  +KVSAEV+L V
Sbjct: 72  LSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVKLSV 131

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKI 239
           RRPP+ISDNST+SV+ SEG  V + CYA+G+P PTI+WRR+N+A L T  + Y GN L+I
Sbjct: 132 RRPPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRI 191

Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA 299
            ++ K DRGTYYCVA NGV +G +RNI VEVEFAPVIT+ RPR GQALQYD  LECH+EA
Sbjct: 192 KSVKKEDRGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIEA 251

Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
           YPPPAIVW KD +Q+ NNQHYS+SHFAT+DE++D++LRVIT+E+RQ+G Y CKA N++G 
Sbjct: 252 YPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKATNRFGE 311

Query: 360 AQKEIELFD 368
           A+  + LF+
Sbjct: 312 AEARVNLFE 320

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|P15364|AMAL_DROME Protein amalgam OS=Drosophila melanogaster GN=Ama PE=2 SV=2

 Score =  235 bits (600), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 189/318 (59%), Gaps = 6/318 (1%)

Query: 56  IIVALSFL--ISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAK 113
           +++ L F   ISL S    P IS IS++ +  +  + +  C+V+      V W K  +  
Sbjct: 6   LLIGLIFCLAISLDSVLSAPVISQISKDVVASVGDSVEFNCTVEEVGQLSVSWAKRPSES 65

Query: 114 KMEPLPISMSGSLIIHDSRFQLTT--DPETST--YILSIKEIQETDAGIYKCEVIISLNN 169
               + +SM   L + D R+ +T    P+T +  Y   I+ I+ +D G Y+C+V++S   
Sbjct: 66  DTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIYTFRIQNIEVSDMGPYECQVLVSATE 125

Query: 170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
           KV+ ++ L ++ PP+I++N+ +S +V+EGQ + L C+ANGFP PTISW R+++A +  GG
Sbjct: 126 KVTKKLSLQIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGG 185

Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY 289
            +     L+I ++ + DRG YYC+AQNG G+  KR I VEVEF P I + RP+  Q + +
Sbjct: 186 HLLAEPTLRIRSVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSH 245

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A LEC V+ YP P +VW K+GV + +++H+ V++ A+S   + + LR+ ++    FG Y
Sbjct: 246 SAELECSVQGYPAPTVVWHKNGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFGDY 305

Query: 350 ACKAANKYGSAQKEIELF 367
            C A NK G A   + LF
Sbjct: 306 YCNATNKLGHADARLHLF 323

Drosophila melanogaster (taxid: 7227)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 27/277 (9%)

Query: 87   AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
             ++AD +C V  A    + W K +  K++ P               + +T     +T  L
Sbjct: 7212 GESADFECHVTGAQPMRITWSKDN--KEIRP------------GGNYTITC--VGNTPHL 7255

Query: 147  SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
             I ++ + D+G Y C+    +   + +  +L V+ PP        S +  +G+++ L C 
Sbjct: 7256 RILKVGKGDSGQYTCQATNDVGKDMCS-AQLSVKEPPKFVKKLEASKVAKQGESIQLECK 7314

Query: 207  ANGFPAPTISWRRDNSAALSTG----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262
             +G P   +SW R++S    +       I    +L I   +  D G Y C A NGVG   
Sbjct: 7315 ISGSPEIKVSWFRNDSELHESWKYNMSFINSVALLTINEASAEDSGDYICEAHNGVGDA- 7373

Query: 263  KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSV 322
              + A+ V+  PV T      G     D IL+C +   PP  +VW+KD  Q+ N++ + +
Sbjct: 7374 SCSTALTVKAPPVFTQKPSPVGALKGSDVILQCEISGTPPFEVVWVKDRKQVRNSKKFKI 7433

Query: 323  SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
                TS  F DTSL ++ +E    G+Y CKA N+ GS
Sbjct: 7434 ----TSKHF-DTSLHILNLEASDVGEYHCKATNEVGS 7465

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7Z3B1|NEGR1_HUMAN Neuronal growth regulator 1 OS=Homo sapiens GN=NEGR1 PE=1 SV=3

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 113/259 (43%), Gaps = 32/259 (12%)

Query: 122 MSGSLIIHDSRFQLTTDPETST-------YILSIKEIQETDAGIYKCEVIISLNNKVSAE 174
           ++ S II     + + DP  S        Y L I+ +  TD G Y C V      + + +
Sbjct: 72  LNRSSIIFAGGDKWSVDPRVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQ 130

Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234
           V L V+ PP I D S   + V+EG  V L C A G P P+ISWR  + +A         G
Sbjct: 131 VHLTVQVPPKIYDIS-NDMTVNEGTNVTLTCLATGKPEPSISWRHISPSA----KPFENG 185

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI------TINRPRQGQALQ 288
             L I  IT+   G Y C A+N V     R + V V FAP I      T+   R G    
Sbjct: 186 QYLDIYGITRDQAGEYECSAENDVSFPDVRKVKVVVNFAPTIQEIKSGTVTPGRSG---- 241

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFG 347
              ++ C     PPPA  W K   ++ N Q    + +F+T      + L V  + +  FG
Sbjct: 242 ---LIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFSTR-----SILTVTNVTQEHFG 293

Query: 348 QYACKAANKYGSAQKEIEL 366
            Y C AANK G+    + L
Sbjct: 294 NYTCVAANKLGTTNASLPL 312

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain.

Homo sapiens (taxid: 9606)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 33/280 (11%)

Query: 87   AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
             ++AD +C V  A    V W K +  K++ P               + +T     +T  L
Sbjct: 7173 GESADFECHVTGAQPMRVTWSKDN--KEIRP------------GGNYTITC--VGNTPHL 7216

Query: 147  SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
             I ++ + D+G Y C+    +   + +  +L V+ PP        S +  +G+++ L C 
Sbjct: 7217 RILKVGKGDSGQYTCQATNDVGKDMCS-AQLSVKEPPKFIKKLDASKVAKQGESIQLECK 7275

Query: 207  ANGFPAPTISWRRDNSAA-------LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
             +G P   + W R++S         +S   S+    +L I   +  D G Y C A NGVG
Sbjct: 7276 ISGSPEIKVVWFRNDSELHESWKYNMSFVNSVA---LLTINEASAEDTGDYICEAHNGVG 7332

Query: 260  RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH 319
                 + A++V+  PV T   P  G     D IL+C +   PP  +VW+KD  Q+ +++ 
Sbjct: 7333 DA-SCSTALKVKAPPVFTQKPPPVGALKGSDVILQCEISGTPPFEVVWVKDRKQVRSSKK 7391

Query: 320  YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
            + +    TS  F DTSL +  +E    G+Y CKA N+ GS
Sbjct: 7392 FKI----TSKNF-DTSLHIFNLEAPDIGEYHCKATNEVGS 7426

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5R412|NEGR1_PONAB Neuronal growth regulator 1 OS=Pongo abelii GN=NEGR1 PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 113/254 (44%), Gaps = 22/254 (8%)

Query: 122 MSGSLIIHDSRFQLTTDPETST-------YILSIKEIQETDAGIYKCEVIISLNNKVSAE 174
           ++ S II     + + DP  S        Y L I+ +  TD G Y C V      + + +
Sbjct: 72  LNRSSIIFAGGDKWSVDPRVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQ 130

Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234
           V L V+ PP I D S+  + ++EG  V L C A G P P+ISWR  + +A         G
Sbjct: 131 VHLTVQVPPKIYDISS-DMTINEGTNVTLTCLATGKPEPSISWRHISPSA----KPFENG 185

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL-QYDAIL 293
             L I  IT+   G Y C A+N V     R + V V FAP  TI   + G        ++
Sbjct: 186 QYLDIYGITRDQAGEYECSAENDVSFPDVRKVKVVVNFAP--TIQEIKSGTMTPGRSGLI 243

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
            C     PPPA  W K   ++ N Q    + +F+T      + L V  + +  FG Y C 
Sbjct: 244 RCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFSTR-----SILTVTNVTQEHFGNYTCV 298

Query: 353 AANKYGSAQKEIEL 366
           AANK G+    + L
Sbjct: 299 AANKLGTTNASLPL 312

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain.

Pongo abelii (taxid: 9601)

>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 21/233 (9%)

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVEL-IVRRPPIISD----NSTRSVIVSEGQ 199
           +L I    E D G+Y+C V      K S EVEL ++  P +ISD         ++   GQ
Sbjct: 205 MLVISNATEGDGGLYRCVVESGGPPKYSDEVELKVLPDPEVISDLVFLKQPSPLVRVIGQ 264

Query: 200 TVYLYCYANGFPAPTISWRRDNSAALSTGGS----IYRGNILKIPNITKTDRGTYYCVAQ 255
            V L C A+G P PTI W + N  AL T  S    +  G  L+I ++T+ D GTY+C+A 
Sbjct: 265 DVVLPCVASGLPTPTIKWMK-NEEALDTESSERLVLLAGGSLEISDVTEDDAGTYFCIAD 323

Query: 256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQI 314
           NG    ++    + V+  P   + +P    A +  D + EC V   P P + W+K+G  +
Sbjct: 324 NG-NETIEAQAELTVQAQPEF-LKQPTNIYAHESMDIVFECEVTGKPTPTVKWVKNGDMV 381

Query: 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
           + + ++ +          + +L+V+ + +   G Y C A N  G+AQ   +L 
Sbjct: 382 IPSDYFKI--------VKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLI 426

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Homo sapiens (taxid: 9606)

>sp|Q8BLK3|LSAMP_MOUSE Limbic system-associated membrane protein OS=Mus musculus GN=Lsamp PE=1 SV=1

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 103/238 (43%), Gaps = 11/238 (4%)

Query: 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
           Y L I+++   D G Y C V      K S +V LIV+ PP IS N +  V V+EG  V L
Sbjct: 94  YSLRIQKVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKIS-NISSDVTVNEGSNVTL 151

Query: 204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263
            C ANG P P I+WR          G      IL    IT+   G Y C A N V     
Sbjct: 152 VCMANGRPEPVITWRHLTPLGREFEGEEEYLEIL---GITREQSGKYECKAANEVSSADV 208

Query: 264 RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVS 323
           + + V V + P IT ++  +    +  A L+C   A P P   W +D  +I      S +
Sbjct: 209 KQVKVTVNYPPTITESKSNEATTGR-QASLKCEASAVPAPDFEWYRDDTRI-----NSAN 262

Query: 324 HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
                     +SL V  +    +G Y C AANK G     + LF +  +T  ++  + 
Sbjct: 263 GLEIKSTEGQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFSKYAKTEPDSMQVI 320

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Mus musculus (taxid: 10090)

>sp|Q98919|LSAMP_CHICK Limbic system-associated membrane protein OS=Gallus gallus PE=2 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
           Y L I+++   D G Y C V    + K S +V LIV+ PP IS N +  + V+EG  V L
Sbjct: 94  YSLRIQKVDVYDEGSYTCSVQTQHHPKTS-QVYLIVQVPPKIS-NISSDITVNEGSNVTL 151

Query: 204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263
            C ANG P P I+WR          G      IL    IT+   G Y C A N V     
Sbjct: 152 VCMANGRPEPVITWRHLTPTGKEFEGEEEYLEIL---GITREQSGKYECKAANEVASADV 208

Query: 264 RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVS 323
           + + V V + P IT ++  +  A    A+L C   A P P   W +D  +I      S +
Sbjct: 209 KQVRVTVNYPPTITESKSNEA-ATGRQALLRCEASAVPTPDFEWYRDDTRIN-----SAN 262

Query: 324 HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
                   S + L V  +    +G Y C AANK G     + L+
Sbjct: 263 GLEIKSTGSQSLLMVANVTEEHYGNYTCVAANKLGVTNASLYLY 306

Mediates selective neuronal growth and axon targeting. Probably serves as a recognition molecule for the formation of limbic connections.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
242012463	344	lachesin precursor, putative [Pediculus	0.789	0.880	0.696	1e-128
3024084	349	RecName: Full=Lachesin; Flags: Precursor	0.794	0.873	0.699	1e-127
189238127	364	PREDICTED: similar to lachesin [Triboliu	0.833	0.879	0.659	1e-126
110761725	363	PREDICTED: lachesin-like [Apis mellifera	0.796	0.842	0.676	1e-123
380022768	363	PREDICTED: lachesin-like [Apis florea]	0.796	0.842	0.676	1e-123
383865563	363	PREDICTED: lachesin-like [Megachile rotu	0.812	0.859	0.670	1e-122
156554623	361	PREDICTED: lachesin-like [Nasonia vitrip	0.809	0.861	0.667	1e-122
340722954	363	PREDICTED: lachesin-like [Bombus terrest	0.807	0.853	0.665	1e-122
307181503	372	Lachesin [Camponotus floridanus]	0.820	0.846	0.647	1e-121
322789174	346	hypothetical protein SINV_07303 [Solenop	0.783	0.869	0.671	1e-121

>gi|242012463|ref|XP_002426952.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212511181|gb|EEB14214.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/303 (69%), Positives = 260/303 (85%)

Query: 66  LASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGS 125
           ++  QRTPTISYISQEQIKDI  T +L+C+VQYA DYPV+W++++  +  +PLPIS   S
Sbjct: 1   MSWCQRTPTISYISQEQIKDIGGTVELQCAVQYAQDYPVLWIRINRNRNNDPLPISSGSS 60

Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
           LII D+RF L  D  +STYIL IK+IQETDAG Y+C+VII LNNK+SAEV+L VRRPPII
Sbjct: 61  LIIKDTRFSLRHDVASSTYILQIKDIQETDAGYYQCQVIIELNNKISAEVDLQVRRPPII 120

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT 245
           SDNSTRS++VSEGQ+V L CYA G+PAP ISWRR+N+A L TGG+IY+GN+LKI ++ K 
Sbjct: 121 SDNSTRSLVVSEGQSVNLECYAGGYPAPRISWRRENNAVLPTGGAIYKGNVLKIASVKKE 180

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI 305
           DRGTYYCVA+NGVGRG +RNI VEVEF PVIT+ RPR GQA+QYD  LECHVEAYPPPAI
Sbjct: 181 DRGTYYCVAENGVGRGARRNIGVEVEFKPVITVPRPRLGQAVQYDMDLECHVEAYPPPAI 240

Query: 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
           VW+KDGVQ+ NNQHYS+SHFAT+DE++DT+LRVITIE+RQ+G+Y CKAANK G+A+ ++E
Sbjct: 241 VWLKDGVQLSNNQHYSISHFATADEYTDTTLRVITIEKRQYGRYTCKAANKLGTAEAQVE 300

Query: 366 LFD 368
           LF+
Sbjct: 301 LFE 303

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3024084|sp|Q26474.1|LACH_SCHAM RecName: Full=Lachesin; Flags: Precursor gi|294841|gb|AAC37185.1| lachesin [Schistocerca americana]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 256/306 (83%), Gaps = 1/306 (0%)

Query: 63  LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
             S+  +QRTPTISYISQEQIKDI  T +L+CSVQYA DYPV+WMK+D  ++++PLPIS 
Sbjct: 12  FFSVVYAQRTPTISYISQEQIKDIGGTVELECSVQYAQDYPVLWMKVDRNRQVDPLPIST 71

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
             SLII DSRF L  D  +STY L IK+IQETDAG Y+C+VII LNNK++AEV+L VRRP
Sbjct: 72  GSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQVIIGLNNKITAEVDLQVRRP 131

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
           P+ISDNSTRS++VSEGQ V L CYA G+PAP +SWRR+N+A L TGGSIYRGN+LKI  I
Sbjct: 132 PVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGNVLKISRI 191

Query: 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP 302
            K DRGTYYCVA+NGVG+G +RNIAVEVEF PVIT+ RPR GQALQYD  LECHVEAYPP
Sbjct: 192 GKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYDMDLECHVEAYPP 251

Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
           PAI W+KD   + NNQHYS+SHFAT+DEF+DT+ RVITIE+RQ+G+Y CKAANK G A++
Sbjct: 252 PAITWLKDETVLSNNQHYSISHFATADEFTDTT-RVITIEKRQYGKYQCKAANKLGEARE 310

Query: 363 EIELFD 368
           E+ELF+
Sbjct: 311 EVELFE 316

Source: Schistocerca americana

Species: Schistocerca americana

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238127|ref|XP_001814833.1| PREDICTED: similar to lachesin [Tribolium castaneum] gi|270008732|gb|EFA05180.1| hypothetical protein TcasGA2_TC015310 [Tribolium castaneum]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/320 (65%), Positives = 256/320 (80%)

Query: 49  MSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMK 108
           M+    ++++ L   I +  +QR+PTISYI+Q QIKDI  T +L CSVQY +DYPVIWMK
Sbjct: 1   MASVQTTVLLVLGVFIEICLAQRSPTISYITQTQIKDIGGTVELSCSVQYTNDYPVIWMK 60

Query: 109 MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLN 168
           +D       LPIS   +LI+H+SR+ L  D  +STY L IK+IQETDAG Y C++IIS +
Sbjct: 61  IDPRSNANSLPISTGSTLILHESRYSLRYDEASSTYTLQIKDIQETDAGFYHCQIIISPS 120

Query: 169 NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG 228
           N+VSAEVEL VRRPP ISDNSTRSV+VSEGQ V + CYA G+P P ISWRR+N+A L TG
Sbjct: 121 NRVSAEVELQVRRPPFISDNSTRSVVVSEGQAVQMECYAGGYPPPRISWRRENNAILPTG 180

Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
           GSIYRGN++KI  I K DRGTYYCVA+NGVGRG KRNIAVEVEFAPV+T+ RPR GQALQ
Sbjct: 181 GSIYRGNVMKIKQIKKEDRGTYYCVAENGVGRGTKRNIAVEVEFAPVVTVPRPRLGQALQ 240

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
           YD  LECHVEAYPPPA+ W+KD V + NNQHYS+SHFAT+DEF+DT+LRVITIE+RQ+GQ
Sbjct: 241 YDMDLECHVEAYPPPALTWVKDEVALSNNQHYSISHFATADEFTDTTLRVITIEKRQYGQ 300

Query: 349 YACKAANKYGSAQKEIELFD 368
           Y CKA+NK GSA+  +ELF+
Sbjct: 301 YICKASNKLGSAEGVVELFE 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761725|ref|XP_397471.3| PREDICTED: lachesin-like [Apis mellifera]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/306 (67%), Positives = 251/306 (82%)

Query: 63  LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
           L+   +SQRTPTISYISQEQIKDI  T + +CSVQYA ++PV+W K++     + LP+S 
Sbjct: 12  LLHTVNSQRTPTISYISQEQIKDIGDTVEFRCSVQYAPEFPVVWTKINKNIANDQLPLSH 71

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
             SLII D+RF L  D   ST+IL IK+IQETDAG Y+C+++ISLNN VSA VEL VRRP
Sbjct: 72  GSSLIIRDTRFALRYDDALSTFILQIKDIQETDAGFYQCKILISLNNYVSANVELQVRRP 131

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
           PIISDNSTRS++V+EGQ V L CYA GFP P ISWRR+N+A L TGGSIYRGN LKI  I
Sbjct: 132 PIISDNSTRSLVVTEGQPVQLECYAGGFPTPRISWRRENNAILPTGGSIYRGNTLKISTI 191

Query: 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP 302
            K DRGTYYCVA+NGVGRG +RNI VEVEFAPVIT  RPR GQALQYD  LECHVEAYPP
Sbjct: 192 RKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHVEAYPP 251

Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
           PAIVW+KD +Q+ NNQHYS+SHFAT+D+++DT++RVITIE+RQ+G+Y C+AANK G+A+ 
Sbjct: 252 PAIVWLKDDIQLSNNQHYSISHFATADQYTDTTIRVITIEKRQYGEYVCRAANKLGTAET 311

Query: 363 EIELFD 368
           ++ELF+
Sbjct: 312 KVELFE 317

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022768|ref|XP_003695209.1| PREDICTED: lachesin-like [Apis florea]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/306 (67%), Positives = 251/306 (82%)

Query: 63  LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
           L+   +SQRTPTISYISQEQIKDI  T + +CSVQYA ++PV+W K++     + LP+S 
Sbjct: 12  LLYTVNSQRTPTISYISQEQIKDIGDTVEFRCSVQYAPEFPVVWTKINKNIANDQLPLSH 71

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
             SLII D+RF L  D   ST+IL IK+IQETDAG Y+C+++ISLNN VSA VEL VRRP
Sbjct: 72  GSSLIIRDTRFALRYDDALSTFILQIKDIQETDAGFYQCKILISLNNYVSANVELQVRRP 131

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
           PIISDNSTRS++V+EGQ V L CYA GFP P ISWRR+N+A L TGGSIYRGN LKI  I
Sbjct: 132 PIISDNSTRSLVVTEGQPVQLECYAGGFPTPRISWRRENNAILPTGGSIYRGNTLKISTI 191

Query: 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP 302
            K DRGTYYCVA+NGVGRG +RNI VEVEFAPVIT  RPR GQALQYD  LECHVEAYPP
Sbjct: 192 RKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHVEAYPP 251

Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
           PAIVW+KD +Q+ NNQHYS+SHFAT+D+++DT++RVITIE+RQ+G+Y C+AANK G+A+ 
Sbjct: 252 PAIVWLKDDIQLSNNQHYSISHFATADQYTDTTIRVITIEKRQYGEYVCRAANKLGTAET 311

Query: 363 EIELFD 368
           ++ELF+
Sbjct: 312 KVELFE 317

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865563|ref|XP_003708242.1| PREDICTED: lachesin-like [Megachile rotundata]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/313 (67%), Positives = 253/313 (80%), Gaps = 1/313 (0%)

Query: 56  IIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKM 115
           II+   FL ++   QRTPTISYI+QEQIKDI  T + +CSVQYA D+PVIW+K++     
Sbjct: 6   IILVFVFLQTV-YGQRTPTISYITQEQIKDIGGTVEFRCSVQYAQDFPVIWIKINKDMAN 64

Query: 116 EPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEV 175
           + LP+S   SLII D+RF L  D  TS+YIL +K+IQETDAG Y+C+V+ISLNN V+A V
Sbjct: 65  DQLPLSHGSSLIITDTRFALKHDEATSSYILQVKDIQETDAGFYQCKVLISLNNYVTANV 124

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
           EL VRRPPIISDNSTRS++VSEGQ V L CYA GFPAP ISWRR+N+A L TGGSIYRGN
Sbjct: 125 ELQVRRPPIISDNSTRSLVVSEGQPVQLECYAGGFPAPRISWRRENNAILPTGGSIYRGN 184

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILEC 295
            LKIP I K DRGTYYCVA+NGVGRG +RNI VEVEFAPVI+  RPR GQALQYD  LEC
Sbjct: 185 TLKIPAIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVISAPRPRLGQALQYDMDLEC 244

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
           HVEAYPPPAI W KD   + NNQHYS+SHFAT+D+++DT++RVITIE++Q+G+Y CKAAN
Sbjct: 245 HVEAYPPPAITWFKDSNVLSNNQHYSISHFATADQYTDTTIRVITIEKKQYGEYVCKAAN 304

Query: 356 KYGSAQKEIELFD 368
           K G+A+  +ELF+
Sbjct: 305 KLGTAETRVELFE 317

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554623|ref|XP_001604968.1| PREDICTED: lachesin-like [Nasonia vitripennis]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/313 (66%), Positives = 256/313 (81%), Gaps = 2/313 (0%)

Query: 56  IIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKM 115
           +I  L  + S+ S QRTPTISYISQEQIKDI  T +  CSVQY+ DYPV+W+K++  ++ 
Sbjct: 6   VIFVLGLMHSVYS-QRTPTISYISQEQIKDIGGTVEFVCSVQYSQDYPVLWIKVNKNRE- 63

Query: 116 EPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEV 175
           + LPIS + +LII DSRF L +DP +STY L IK+IQETDAG Y C+++IS ++K+SAEV
Sbjct: 64  DQLPISTNTALIIRDSRFALRSDPSSSTYTLQIKDIQETDAGFYLCQILISTSSKISAEV 123

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
           EL VRRPPIISDNSTRS++VSEGQ V L CYA GFP P ISWRR+N+A L TGGSIYRGN
Sbjct: 124 ELQVRRPPIISDNSTRSLVVSEGQPVELNCYAGGFPTPRISWRRENNAILPTGGSIYRGN 183

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILEC 295
            LKI ++ K DRGTYYCVA+NGVGRG +RNI +E+EFAPVIT  RPR GQALQYD  LEC
Sbjct: 184 TLKIAHVRKEDRGTYYCVAENGVGRGARRNINLEIEFAPVITAPRPRLGQALQYDMDLEC 243

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
           HVEAYPPP I W KD VQ+ NNQHYS+SHFAT+DE++DT+LRVITIE++Q+G+Y CKAAN
Sbjct: 244 HVEAYPPPGITWHKDEVQLSNNQHYSISHFATADEYTDTTLRVITIEKKQYGEYVCKAAN 303

Query: 356 KYGSAQKEIELFD 368
           K G+A+  +ELF+
Sbjct: 304 KLGTAETRVELFE 316

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722954|ref|XP_003399864.1| PREDICTED: lachesin-like [Bombus terrestris] gi|350403675|ref|XP_003486872.1| PREDICTED: lachesin-like [Bombus impatiens]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/311 (66%), Positives = 253/311 (81%), Gaps = 1/311 (0%)

Query: 58  VALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEP 117
           +A +FL ++  SQRTPTISYISQEQIKDI +T + +CSV YA D+PV+W K++     + 
Sbjct: 8   LAFAFLYAV-KSQRTPTISYISQEQIKDIGETVEFRCSVLYAPDFPVVWTKINKNVANDQ 66

Query: 118 LPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVEL 177
           LP+S   +LII D+RF L  D   ST+ L IK+IQETDAG Y+C+++ISLNN VSA VEL
Sbjct: 67  LPLSHGSTLIIRDTRFTLKYDDALSTFRLQIKDIQETDAGFYQCKILISLNNYVSANVEL 126

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNIL 237
            VRRPPIISDNSTR+++V+EGQ V L CYA GFP P ISWRR+N+A L TGGSIYRGN L
Sbjct: 127 QVRRPPIISDNSTRALVVTEGQPVQLDCYAGGFPTPRISWRRENNAILPTGGSIYRGNTL 186

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
           KI  I K DRGTYYCVA+NGVGRG +RNI VEVEFAPVIT  RPR GQALQYD  LECHV
Sbjct: 187 KISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHV 246

Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
           EAYPPPAIVW+KD VQ+ NNQHYS+SHFAT+D+++DT++RVITIE+RQ+G+Y C+AANK 
Sbjct: 247 EAYPPPAIVWLKDDVQLSNNQHYSISHFATADQYTDTTIRVITIEKRQYGEYVCRAANKL 306

Query: 358 GSAQKEIELFD 368
           G+A+  +ELF+
Sbjct: 307 GTAETSVELFE 317

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181503|gb|EFN69091.1| Lachesin [Camponotus floridanus]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/315 (64%), Positives = 253/315 (80%)

Query: 54  PSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAK 113
           P I+      +    +QRTPTISYISQEQIKDI +T +L+CS+QYA+DYPV+W+K++   
Sbjct: 3   PVILALTCVFLQTVVAQRTPTISYISQEQIKDIGETVELRCSIQYAEDYPVLWIKLNRNS 62

Query: 114 KMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSA 173
             E + +S   +LII DSRF +  D  +++Y+L IK+IQETDAG Y+C + IS+NN ++A
Sbjct: 63  VHEQVALSTGTALIIRDSRFAIRHDTASASYLLQIKDIQETDAGFYQCRIQISVNNLLNA 122

Query: 174 EVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR 233
           EVEL VRRPPIISDNST+S++VSEGQ V L CYA+GFP   ISWRR+N+A L TGGSIYR
Sbjct: 123 EVELQVRRPPIISDNSTQSLVVSEGQPVMLECYASGFPPARISWRRENNAILPTGGSIYR 182

Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAIL 293
           GN LKI  I K DRGTYYCVA+NGVGRG +RNI VEVEFAPVIT  RPR GQALQYD  L
Sbjct: 183 GNTLKISAIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDL 242

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
           ECHVEAYPPPAI W+KD VQ+ NNQHYS+SHFAT+DE++DT++RVITIE+RQ+G Y C+A
Sbjct: 243 ECHVEAYPPPAITWVKDDVQLSNNQHYSISHFATADEYTDTTIRVITIEKRQYGVYVCRA 302

Query: 354 ANKYGSAQKEIELFD 368
           ANK GSA+ ++ELF+
Sbjct: 303 ANKLGSAETKVELFE 317

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789174|gb|EFZ14560.1| hypothetical protein SINV_07303 [Solenopsis invicta]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/301 (67%), Positives = 250/301 (83%)

Query: 68  SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI 127
           ++QRTPTISYISQEQIKDI +T +L CSVQYA +YPV+W+K++     E + +S   +LI
Sbjct: 1   AAQRTPTISYISQEQIKDIGETVELLCSVQYAQEYPVLWIKVNKESVHEQVALSTGTALI 60

Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD 187
           I DSRF L  D  ++TY L IK+IQETDAG Y+C + IS+NN +SAEVEL VRRPPIISD
Sbjct: 61  IRDSRFALKYDTASTTYNLQIKDIQETDAGFYQCRIQISVNNLISAEVELQVRRPPIISD 120

Query: 188 NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDR 247
           NST+S++VSEGQ V L CYANG+P P ISWRR+N+A L TGGSIYRG  LKI +I K DR
Sbjct: 121 NSTQSLVVSEGQPVLLECYANGYPTPRISWRRENNAILPTGGSIYRGTTLKISSIRKEDR 180

Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVW 307
           GTYYC+A+NGVGRG +RNI VEVEFAPVIT  RPR GQALQYD  LECHVEAYPPPAI+W
Sbjct: 181 GTYYCIAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHVEAYPPPAIIW 240

Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
           +KD +Q+ NNQHYS+SHFAT+DE++DT++RVITIE+RQ+G+Y C+AANK G+A+ ++ELF
Sbjct: 241 LKDDIQLSNNQHYSISHFATADEYTDTTIRVITIEKRQYGEYLCRAANKLGTAETKVELF 300

Query: 368 D 368
           +
Sbjct: 301 E 301

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.794	0.849	0.605	3.7e-103
FB|FBgn0000071	333	Ama "Amalgam" [Drosophila mela	0.812	0.936	0.371	1.7e-59
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.700	0.576	0.291	9.1e-29
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.677	0.468	0.268	2.5e-27
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.734	0.75	0.277	9.4e-27
MGI|MGI:1261760	341	Lsamp "limbic system-associate	0.583	0.656	0.322	1.2e-24
UNIPROTKB|Q98919	338	Q98919 "Limbic system-associat	0.549	0.624	0.327	5.3e-24
UNIPROTKB|Q13449	338	LSAMP "Limbic system-associate	0.549	0.624	0.336	5.3e-24
RGD|71102	338	Lsamp "limbic system-associate	0.549	0.624	0.336	8.7e-24
UNIPROTKB|Q7Z3B1	354	NEGR1 "Neuronal growth regulat	0.580	0.629	0.326	1.4e-23

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 187/309 (60%), Positives = 241/309 (77%)

Query:    60 LSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLP 119
             L+  +    +QRTPTISYI+QEQIKDI  T +  CSVQYA +Y V+++K D+    +P+ 
Sbjct:    16 LAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDCSVQYAKEYNVLFLKTDS----DPVF 71

Query:   120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
             +S   +L+I DSRF L  DP +STY L IK+IQETDAG Y C+V+IS  +KVSAEV+L V
Sbjct:    72 LSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVKLSV 131

Query:   180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKI 239
             RRPP+ISDNST+SV+ SEG  V + CYA+G+P PTI+WRR+N+A L T  + Y GN L+I
Sbjct:   132 RRPPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRI 191

Query:   240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA 299
              ++ K DRGTYYCVA NGV +G +RNI VEVEFAPVIT+ RPR GQALQYD  LECH+EA
Sbjct:   192 KSVKKEDRGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIEA 251

Query:   300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
             YPPPAIVW KD +Q+ NNQHYS+SHFAT+DE++D++LRVIT+E+RQ+G Y CKA N++G 
Sbjct:   252 YPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKATNRFGE 311

Query:   360 AQKEIELFD 368
             A+  + LF+
Sbjct:   312 AEARVNLFE 320

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0000071 Ama "Amalgam" [Drosophila melanogaster (taxid:7227)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 118/318 (37%), Positives = 191/318 (60%)

Query:    56 IIVALSFL--ISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAK 113
             +++ L F   ISL S    P IS IS++ +  +  + +  C+V+      V W K  +  
Sbjct:     6 LLIGLIFCLAISLDSVLSAPVISQISKDVVASVGDSVEFNCTVEEVGQLSVSWAKRPSES 65

Query:   114 KMEPLPISMSGSLIIHDSRFQLT-TD-PETST--YILSIKEIQETDAGIYKCEVIISLNN 169
                 + +SM   L + D R+ +T T+ P+T +  Y   I+ I+ +D G Y+C+V++S   
Sbjct:    66 DTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIYTFRIQNIEVSDMGPYECQVLVSATE 125

Query:   170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
             KV+ ++ L ++ PP+I++N+ +S +V+EGQ + L C+ANGFP PTISW R+++A +  GG
Sbjct:   126 KVTKKLSLQIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGG 185

Query:   230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY 289
              +     L+I ++ + DRG YYC+AQNG G+  KR I VEVEF P I + RP+  Q + +
Sbjct:   186 HLLAEPTLRIRSVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSH 245

Query:   290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              A LEC V+ YP P +VW K+GV + +++H+ V++ A+S   + + LR+ ++    FG Y
Sbjct:   246 SAELECSVQGYPAPTVVWHKNGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFGDY 305

Query:   350 ACKAANKYGSAQKEIELF 367
              C A NK G A   + LF
Sbjct:   306 YCNATNKLGHADARLHLF 323

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007155 "cell adhesion" evidence=NAS

GO:0003823 "antigen binding" evidence=NAS

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 83/285 (29%), Positives = 130/285 (45%)

Query:    92 LKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS--TYILSIK 149
             L CSV+    Y V WM  +     +   +++   +I  + R  +T D      T+ L I 
Sbjct:    71 LACSVKNLGSYKVAWMHFE-----QSAILTVHNHVITRNPRISVTHDKHDKHRTWFLHIN 125

Query:   150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS-VIVSEGQTVYLYCYAN 208
              +QE D G Y C++           V+++V  PP I D  T S +IV EG  V L C A 
Sbjct:   126 NVQEEDRGRYMCQINTVTAKTQYGFVKVVV--PPNIDDALTSSDIIVREGDNVTLRCKAK 183

Query:   209 GFPAPTISWRRD--NSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKR 264
             G P PTI W+RD  N   ++    ++    + L++  I++   G Y C+A NGV   + +
Sbjct:   184 GSPEPTIKWKRDDGNKIVINKTLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSVSK 243

Query:   265 NIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ-IMNNQHYSVS 323
              I V V+F+P++ I     G  + ++  LEC +EA P     W ++  Q I  +  Y   
Sbjct:   244 RIKVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKYKTE 303

Query:   324 HFATSDEFSDTSLRVIT-IERRQFGQYACKAANKYGSAQKEIELF 367
                    +  T    IT ++   +G Y C A N  G     I+L+
Sbjct:   304 TIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLY 348

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
 Identities = 74/276 (26%), Positives = 139/276 (50%)

Query:   104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
             V W+K D AK +    +++   +I ++ R  +  + + +T+ L+I+ ++  DAG Y C+V
Sbjct:   140 VAWIKAD-AKAI----LAIHEHVITNNDRLSVQHN-DYNTWTLNIRGVKMEDAGKYMCQV 193

Query:   164 IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR-DNS 222
                     +A +E+++  P II++ ++  ++V EG +  L C A G P P I+WRR D  
Sbjct:   194 NTDPMKMQTATLEVVIP-PDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGR 252

Query:   223 AALSTGGSIYR-------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
               ++  GS  +       G +L +  IT+++ G Y C+A NGV   + + + ++V F P+
Sbjct:   253 EIIARNGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHPL 312

Query:   276 ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDT 334
             + +     G  +  D  L C+VEA P     W ++ G  I+    Y+++    +    + 
Sbjct:   313 VQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIEM 372

Query:   335 SLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370
              L +  ++   FG Y C + N  G  +  I L++ E
Sbjct:   373 ILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEME 408

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 83/299 (27%), Positives = 139/299 (46%)

Query:    86 IAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
             + + A L C V     + V W+++DT    + + +S+   +I  + R  ++   E   + 
Sbjct:    44 VGRDALLTCVVHDLVSFKVAWLRVDT----QTI-LSIQNHVITKNHRISIS-HTEHRIWQ 97

Query:   146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST-RSVIVSEGQTVYLY 204
             L I+++QE+D G Y C++           ++++V  PP I D  T + V+ S GQ V L 
Sbjct:    98 LKIRDVQESDRGWYMCQINTDPMKSQMGYLDVVV--PPDIVDYQTSQDVVRSTGQNVTLT 155

Query:   205 CYANGFPAPTISWRRDNSAAL--STGGS--IY--RGNILKIPNITKTDRGTYYCVAQNGV 258
             C A G P PTI+WRR+ +  +  S  G   ++   G  L +  + ++  G Y C+A NGV
Sbjct:   156 CSATGVPMPTITWRREEATPILISDDGDREVFSVEGQNLTLWQVQRSHMGAYLCIASNGV 215

Query:   259 GRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ 318
                + + + + V FAP I          L     LEC  E+ P     W++D   +    
Sbjct:   216 PPTVSKRVMLVVNFAPTIWTRYDTIYVGLGQKLTLECITESQPASVNFWLRDSQLLQGGS 275

Query:   319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET 377
             + SVS           +LR IT  +R FG+Y C+A N  G   + I +  +  + G  +
Sbjct:   276 YESVSVDHVFRIVMRITLRPIT--KRDFGEYICRAKNAMGQTDRIITVHHKAKKHGQHS 332

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

MGI|MGI:1261760 Lsamp "limbic system-associated membrane protein" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 77/239 (32%), Positives = 110/239 (46%)

Query:   144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
             Y L I+++   D G Y C V      K S +V LIV+ PP IS N +  V V+EG  V L
Sbjct:    94 YSLRIQKVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKIS-NISSDVTVNEGSNVTL 151

Query:   204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGN--ILKIPNITKTDRGTYYCVAQNGVGRG 261
              C ANG P P I+WR      L+  G  + G    L+I  IT+   G Y C A N V   
Sbjct:   152 VCMANGRPEPVITWRH-----LTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSA 206

Query:   262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
               + + V V + P IT ++  +    +  A L+C   A P P   W +D  +I +     
Sbjct:   207 DVKQVKVTVNYPPTITESKSNEATTGR-QASLKCEASAVPAPDFEWYRDDTRINSANGLE 265

Query:   322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPI 380
             +     S E   +SL V  +    +G Y C AANK G     + LF +  +T  ++  +
Sbjct:   266 IK----STE-GQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFSKYAKTEPDSMQV 319

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|Q98919 Q98919 "Limbic system-associated membrane protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 74/226 (32%), Positives = 105/226 (46%)

Query:   144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
             Y L I+++   D G Y C V    + K S +V LIV+ PP IS N +  + V+EG  V L
Sbjct:    94 YSLRIQKVDVYDEGSYTCSVQTQHHPKTS-QVYLIVQVPPKIS-NISSDITVNEGSNVTL 151

Query:   204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGN--ILKIPNITKTDRGTYYCVAQNGVGRG 261
              C ANG P P I+WR      L+  G  + G    L+I  IT+   G Y C A N V   
Sbjct:   152 VCMANGRPEPVITWRH-----LTPTGKEFEGEEEYLEILGITREQSGKYECKAANEVASA 206

Query:   262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
               + + V V + P IT ++  +  A    A+L C   A P P   W +D  +I +     
Sbjct:   207 DVKQVRVTVNYPPTITESKSNEA-ATGRQALLRCEASAVPTPDFEWYRDDTRINSANGLE 265

Query:   322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
             +   +T    S + L V  +    +G Y C AANK G     + L+
Sbjct:   266 IK--STG---SQSLLMVANVTEEHYGNYTCVAANKLGVTNASLYLY 306

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q13449 LSAMP "Limbic system-associated membrane protein" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 76/226 (33%), Positives = 104/226 (46%)

Query:   144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
             Y L I+++   D G Y C V      K S +V LIV+ PP IS N +  V V+EG  V L
Sbjct:    94 YSLRIQKVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKIS-NISSDVTVNEGSNVTL 151

Query:   204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGN--ILKIPNITKTDRGTYYCVAQNGVGRG 261
              C ANG P P I+WR      L+  G  + G    L+I  IT+   G Y C A N V   
Sbjct:   152 VCMANGRPEPVITWRH-----LTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSA 206

Query:   262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
               + + V V + P IT ++  +    +  A L+C   A P P   W +D  +I +     
Sbjct:   207 DVKQVKVTVNYPPTITESKSNEATTGR-QASLKCEASAVPAPDFEWYRDDTRINSANGLE 265

Query:   322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
             +     S E   +SL V  +    +G Y C AANK G     + LF
Sbjct:   266 IK----STE-GQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLF 306

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|71102 Lsamp "limbic system-associated membrane protein" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 76/226 (33%), Positives = 104/226 (46%)

Query:   144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
             Y L I+++   D G Y C V      K S +V LIV+ PP IS N +  V V+EG  V L
Sbjct:    94 YSLRIQKVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKIS-NISSDVTVNEGSNVTL 151

Query:   204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGN--ILKIPNITKTDRGTYYCVAQNGVGRG 261
              C ANG P P I+WR      L+  G  + G    L+I  IT+   G Y C A N V   
Sbjct:   152 VCMANGRPEPVITWRH-----LTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSA 206

Query:   262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
               + + V V + P IT ++  +    +  A L+C   A P P   W +D  +I +     
Sbjct:   207 DVKQVKVTVNYPPTITESKSNEATTGR-QASLKCEASAVPAPDFEWYRDDTRINSANGLE 265

Query:   322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
             +     S E   +SL V  +    +G Y C AANK G     + LF
Sbjct:   266 IK----STE-GQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLF 306

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|Q7Z3B1 NEGR1 "Neuronal growth regulator 1" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 78/239 (32%), Positives = 108/239 (45%)

Query:   130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
             D R  ++T  +   Y L I+ +  TD G Y C V      + + +V L V+ PP I D S
Sbjct:    88 DPRVSISTLNKRD-YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDIS 145

Query:   190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
                + V+EG  V L C A G P P+ISWR  + +A         G  L I  IT+   G 
Sbjct:   146 N-DMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKP----FENGQYLDIYGITRDQAGE 200

Query:   250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWI 308
             Y C A+N V     R + V V FAP  TI   + G        ++ C     PPPA  W 
Sbjct:   201 YECSAENDVSFPDVRKVKVVVNFAP--TIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWY 258

Query:   309 KDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             K   ++ N Q    + +F+T      + L V  + +  FG Y C AANK G+    + L
Sbjct:   259 KGEKKLFNGQQGIIIQNFSTR-----SILTVTNVTQEHFGNYTCVAANKLGTTNASLPL 312

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24372	LACH_DROME	No assigned EC number	0.6051	0.7942	0.8495	yes	N/A
Q5R412	NEGR1_PONAB	No assigned EC number	0.3149	0.6041	0.6553	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	384
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-15
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-14
smart00409	85	smart00409, IG, Immunoglobulin	2e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-14
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-13
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-12
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-11
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	4e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-10
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-09
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-09
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	3e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-09
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-09
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	5e-08
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-07
smart00409	85	smart00409, IG, Immunoglobulin	2e-07
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	6e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	9e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	4e-06
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	5e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	6e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	7e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	8e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	4e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	7e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	8e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	8e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	8e-05
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	9e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	2e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	2e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-04
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	2e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	2e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	3e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	4e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	4e-04
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	5e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	7e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	7e-04
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.001
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	0.001
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.001
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.001
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.001
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	0.001
cd05712	119	cd05712, Ig_Siglec_N, Immunoglobulin (Ig) domain a	0.001
cd05859	101	cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I	0.001
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	0.001
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.002
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.002
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.002
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.002
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.002
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.002
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.003
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.003
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.003
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.003
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	0.003
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	0.003
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.004
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.004
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQ 255
           EGQ+V L C A G P P I+W +D    L            L I +++  D G Y CVA+
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGK-PLPESNRFVASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 256 NGVG 259
           N  G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGN---ILKIPNITKT 245
            SV V EG++V L C A+G P P ++W +     L+  G  S+ R      L I N+T  
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 246 DRGTYYCVAQNGVG 259
           D GTY C A N  G
Sbjct: 62  DSGTYTCAATNSSG 75

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGN---ILKIPNITKT 245
            SV V EG++V L C A+G P P ++W +     L+  G  S+ R      L I N+T  
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 246 DRGTYYCVAQNGVG 259
           D GTY C A N  G
Sbjct: 62  DSGTYTCAATNSSG 75

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
           + V V EG++    C   G P PT+SW +D    L +       Y G    L I N+   
Sbjct: 8   KDVEVQEGESARFTCTVTGDPDPTVSWFKDGQ-PLRSSDRFKVTYEGGTYTLTISNVQPD 66

Query: 246 DRGTYYCVAQNGVG 259
           D G Y CVA N  G
Sbjct: 67  DEGKYTCVATNSAG 80

Length = 90

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 28/67 (41%), Positives = 37/67 (55%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257
           GQ V L C+A G P P I WR+ + +  S+      G +LKIPNI   D GTY C A+N 
Sbjct: 16  GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENI 75

Query: 258 VGRGMKR 264
            G+   +
Sbjct: 76  KGKDTHQ 82

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A   C V   P P + W KDG  + ++  + V++          +L +  ++    G+Y
Sbjct: 17  SARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEG-----GTYTLTISNVQPDDEGKY 71

Query: 350 ACKAANKYGSAQKEIEL 366
            C A N  G A+   EL
Sbjct: 72  TCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 60.1 bits (146), Expect = 8e-12
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
            P+++ + T    V EG+ V L C A G P P  +W +D     S+    +       PN
Sbjct: 1   KPVLTPSPTV---VFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPN 51

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
           ++  D GTY CVA NG G      + + V
Sbjct: 52  VSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRG 261
           L C A G P P ISW +      +        N  LKI N+++ D G Y C A N +G  
Sbjct: 3   LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS- 61

Query: 262 MKRNIAVEVE 271
            +  I+V VE
Sbjct: 62  ARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 201 VYLYCYANGFPAPTISWRRDNSAAL-STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
           + L C A G P P + W R +     +    +     L++ N+ ++D G Y C A+N  G
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 260 RGMKRNIAVEVE 271
              + +  V VE
Sbjct: 61  -SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 54.8 bits (131), Expect = 6e-10
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 8/67 (11%)

Query: 201 VYLYCYANGFPAPTISWRRDN--------SAALSTGGSIYRGNILKIPNITKTDRGTYYC 252
           V L C A+G P PTI+W ++         +   S+ G+    + L I N+T  D GTY C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 253 VAQNGVG 259
           VA N  G
Sbjct: 61  VASNSAG 67

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNIL 237
           P I +  S  +   + GQ+V L C A+GFP PT++W +D    + +G   Y     G+ +
Sbjct: 2   PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDG-EPIESGEEKYSFNEDGSEM 60

Query: 238 KIPNITKTDRGTYYCVAQNGVG 259
            I ++ K D   Y C+A+N  G
Sbjct: 61  TILDVDKLDEAEYTCIAENKAG 82

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG-------NILKIPNITKTDRGTYYCV 253
           V   C   G P PT+ WR++        G + +G         LKI N+T  D G+Y C 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKE-------DGELPKGRAEILDDKSLKIRNVTAGDEGSYTCE 53

Query: 254 AQNGVG 259
           A+N VG
Sbjct: 54  AENMVG 59

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257
           GQ V L C+A G P P I WR+      +T      G +LKI NI   D GTY C A+N 
Sbjct: 16  GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENI 75

Query: 258 VGR 260
            G+
Sbjct: 76  KGK 78

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
           +GQ++     L C  E  P P I W+KDG  +   +             S ++L + ++ 
Sbjct: 1   EGQSVT----LTCPAEGNPVPNITWLKDGKPL--PESNRFVA-------SGSTLTIKSVS 47

Query: 343 RRQFGQYACKAANKYG 358
               G Y C A N  G
Sbjct: 48  LEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 191 RSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIY---RGNILKIPNITKTD 246
               V+ G+   L C    G P PT+SWR+D          +     GN+L I    K+D
Sbjct: 4   SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL-IAEARKSD 62

Query: 247 RGTYYCVAQNGVG 259
            GTY CVA N VG
Sbjct: 63  EGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIP 240
            P+I+   + S  V+ G  V L C    G P PTISW R+ S +  +GG    G+ L + 
Sbjct: 1   KPVIT--VSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLS 58

Query: 241 NITKTDRGTYYCVAQN 256
           ++T  D GTY CVA N
Sbjct: 59  SVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           ++  L C    +    V W K               G L+    RF ++    TST  L+
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQG-------------GKLLAESGRFSVSRSGSTST--LT 54

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           I  +   D+G Y C    S +   S+   L V
Sbjct: 55  ISNVTPEDSGTYTCAATNS-SGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           ++  L C    +    V W K               G L+    RF ++    TST  L+
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQG-------------GKLLAESGRFSVSRSGSTST--LT 54

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           I  +   D+G Y C    S +   S+   L V
Sbjct: 55  ISNVTPEDSGTYTCAATNS-SGSASSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
             L C     PPP I W+K+G  +  +   +    +       ++L +  +     G Y 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPL-PSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 351 CKAANKYGSAQKEIE 365
           C A+N  G+    + 
Sbjct: 60  CVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKTDRGTYYCVAQ 255
           G  V + C     P PTISW +  +  L+      I+    L+I N+TK+D G Y C A+
Sbjct: 1   GGDVIIECKPKAAPKPTISWSK-GTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAE 59

Query: 256 NGVGRG 261
           N  G+ 
Sbjct: 60  NFFGKA 65

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
              L C     PPP + W K G + +  +  +SVS        S ++L +  +     G 
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSR-----SGSTSTLTISNVTPEDSGT 65

Query: 349 YACKAANKYGSAQKEIEL 366
           Y C A N  GSA     L
Sbjct: 66  YTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
              L C     PPP + W K G + +  +  +SVS        S ++L +  +     G 
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSR-----SGSTSTLTISNVTPEDSGT 65

Query: 349 YACKAANKYGSAQKEIEL 366
           Y C A N  GSA     L
Sbjct: 66  YTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 88  QTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLII-----HDSRFQLTTDPET 141
            +  L CS    +    V W K    K  E +   ++ +           R  L+ +   
Sbjct: 17  GSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNGSK 76

Query: 142 STYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           + + L+I  ++ +D+G Y C V         A   L V
Sbjct: 77  NDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTRLTV 114

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 14/101 (13%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
           PP I ++ +  +IVS+G    L C A G P PTI W + N   L T     R + + +P+
Sbjct: 1   PPRIVEHPS-DLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPS 58

Query: 242 ------------ITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
                         ++D G Y CVA N +G  + RN ++EV
Sbjct: 59  GSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN--ILKIPNITKTDRGTYYCVAQ 255
           G +V L C A+G P P I+W +DN     T     R     L + N+   D G Y C   
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 256 NGVGR 260
           N  G 
Sbjct: 69  NRAGE 73

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
           +GQ + +     C  + YP P I W K G Q+  ++ + V         S  +LR+  + 
Sbjct: 1   EGQTVDF----LCEAQGYPQPVIAWTKGGSQLSVDRRHLV--------LSSGTLRISRVA 48

Query: 343 RRQFGQYACKAANKYGSAQKEIEL 366
               GQY C+A N  GS +   +L
Sbjct: 49  LHDQGQYECQAVNIVGSQRTVAQL 72

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 198 GQTVYLYCYANGFPAPTISWR--------RDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
           G+TV   C A G P P I+WR            +  S GG    G  L I ++ ++D+G 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGG---YGT-LTIRDVKESDQGA 56

Query: 250 YYCVAQNGVGR 260
           Y C A N  G 
Sbjct: 57  YTCEAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 15/71 (21%)

Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSA--------ALSTGGSIYRGNILKIPNITKTDRG 248
           EGQTV   C A G+P P I+W +  S          LS+G        L+I  +   D+G
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG-------TLRISRVALHDQG 53

Query: 249 TYYCVAQNGVG 259
            Y C A N VG
Sbjct: 54  QYECQAVNIVG 64

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSA---ALSTGG--SIYRGNILKIPNITKTDRGT 249
           V  G TV L C A+G P PTI+W +D          GG     +   L + ++  +D G 
Sbjct: 6   VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGK 65

Query: 250 YYCVAQNGVGR 260
           Y C+ +N  G 
Sbjct: 66  YTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 198 GQTVYLYCYANGFPAPTISWR--RDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ 255
           GQ   L C A G P P I W        + S+   +Y    L I   T  D G++ C+A 
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 256 NGVG 259
           N  G
Sbjct: 61  NAAG 64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           D + EC V   P P + W+K+G  ++ + ++ +          + +L+V+ + +   G Y
Sbjct: 1   DIVFECEVTGKPTPTVKWVKNGDMVIPSDYFKI--------VKEHNLQVLGLVKSDEGFY 52

Query: 350 ACKAANKYGSAQKEIEL 366
            C A N  G+ Q   +L
Sbjct: 53  QCIAENDVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRD----NSAALSTGGSI-----YRGNILKIPN 241
            +    E + + L C A G P P I+WRR     +    S  G I      R + L + +
Sbjct: 9   ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKD 68

Query: 242 ITKTDRGTYYCVAQNGVGRGMK 263
           +  TD G Y C A N +G   +
Sbjct: 69  VQLTDAGRYDCEASNRIGGDQQ 90

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           D I+EC  +A P P I W K    + N+    +        + D SL ++ + +   G+Y
Sbjct: 3   DVIIECKPKAAPKPTISWSKGTELLTNSSRICI--------WPDGSLEILNVTKSDEGKY 54

Query: 350 ACKAANKYGSA 360
            C A N +G A
Sbjct: 55  TCFAENFFGKA 65

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 192 SVIVSEGQT---VYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKT 245
             I  E      V L C A G P PT  W  + +       S Y    GN L I N +K 
Sbjct: 10  DTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGN-LVISNPSKA 68

Query: 246 -DRGTYYCVAQNGVG 259
            D G Y C+A N VG
Sbjct: 69  KDAGRYQCLASNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG----GSIYRGNILKIPNITKTD 246
           RS+ VSEG++    C  +G PAPT++W R+    +S+      S    +  +I  +  +D
Sbjct: 11  RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSD 70

Query: 247 RGTYYCVAQNGVGR 260
            G Y  V +N  G+
Sbjct: 71  EGNYTVVVENSEGK 84

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI----LK 238
            I  D    + +V EG T  + C A G P P + W       + T        +    L+
Sbjct: 1   TIPVDGPN-ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQ 59

Query: 239 IPNITKTDRGTYYCVAQNGVGR 260
           + NIT   + T  C A+N VG+
Sbjct: 60  LSNITSETQTTVTCTAENPVGQ 81

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 188 NSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDN----SAALSTGGSIYRGNILKIPNI 242
              RS  V  G  V   C A +  PA T+ W R      S A+   G      IL I N+
Sbjct: 6   EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNG------ILTIRNV 59

Query: 243 TKTDRGTYYCVAQN 256
             +D GTY C   N
Sbjct: 60  QLSDAGTYVCTGSN 73

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           ++A   C+V    D  V W K               G  +    RF++T +  T T  L+
Sbjct: 16  ESARFTCTVTGDPDPTVSWFK--------------DGQPLRSSDRFKVTYEGGTYT--LT 59

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           I  +Q  D G Y C    S   +  A  EL V
Sbjct: 60  ISNVQPDDEGKYTCVATNSA-GEAEASAELTV 90

Length = 90

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGNILKIPNITKTDRGTYYCVAQN 256
           V L C+ +G P PT  W RD    LS G   Y    +   L + +    D G YYC A N
Sbjct: 1   VTLRCHIDGHPRPTYQWFRD-GTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHN 59

Query: 257 GVG 259
             G
Sbjct: 60  AFG 62

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 203 LYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
           + C A+G P P I+W +D     +T        R   L+I N  ++D+G Y CVA N  G
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITIERRQFGQYA 350
            L C  E YPPP IVW K      + QH      A   +  S+ SL +  +     G Y 
Sbjct: 2   TLNCSAEGYPPPTIVW-KHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 351 CKAANKYGS 359
           CK +N  G+
Sbjct: 61  CKVSNDVGA 69

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNS--AALSTGGSIY-RGNILKIPNITKTDRGTYYCVA 254
           G+T  L C A G P PTI+WR +      L         G  L + N+   D   Y C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 255 QNGVG 259
            N  G
Sbjct: 61  SNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKTDRGTYYCVAQN 256
           G  V + C     P P  SW +     ++    SI+    L+I NITK D G+Y C A+N
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 257 GVGR 260
             G+
Sbjct: 61  NRGK 64

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
           I+EC  +A P P   W K    ++NN   S+        + D SL ++ I +   G Y C
Sbjct: 5   IIECKPKAAPKPKFSWSKGTELLVNNSRISI--------WDDGSLEILNITKLDEGSYTC 56

Query: 352 KAANKYGSA 360
            A N  G A
Sbjct: 57  FAENNRGKA 65

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           + C  +  P P I W KDGVQ+  +  + +S         +  L +  +     G+Y C 
Sbjct: 3   IPCSAQGDPEPTITWNKDGVQVTESGKFHIS--------PEGYLAIRDVGVADQGRYECV 54

Query: 353 AANKYGSAQKEIEL 366
           A N  G A   + L
Sbjct: 55  ARNTIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKI 239
           +P I S+NS  +    + Q V L C A G  A  I W  + S  +     +   N  L  
Sbjct: 1   KPVINSNNSVGNQPPEDNQPVTLTCEAEG-QATYIWWVNNGSLLVPPRLQLSNDNRTLTF 59

Query: 240 PNITKTDRGTYYCVAQNGV 258
            N+T++D G Y C A N V
Sbjct: 60  NNVTRSDTGHYQCEASNEV 78

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNS---------AALSTGGSIYRGNILKIPNIT 243
           ++   G  V L C A G P P I W++D                 GS+   +++   +  
Sbjct: 9   IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKH-N 67

Query: 244 KTDRGTYYCVAQNG 257
           K D G Y CVAQN 
Sbjct: 68  KPDEGFYQCVAQND 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 205 CYANGFPAPTISWRRDNSAAL-STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
           C   G P PT+ W ++    + S    I + + L++  + K+D G Y C+A+N VG
Sbjct: 6   CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
           V + C A G P PTI+W +D      +G   I     L I ++   D+G Y CVA+N +G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNG 257
           L C+A G P P ++W + N   ++   S     I  G+ L I N+   D G Y C+A+N 
Sbjct: 3   LRCHAEGIPLPRLTWLK-NGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Query: 258 VG 259
            G
Sbjct: 62  AG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
           A L CH E  P P + W+K+G+ I       ++  A   E     L +  +     G Y 
Sbjct: 1   ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSE-----LHISNVRYEDTGAYT 55

Query: 351 CKAANKYG 358
           C A N+ G
Sbjct: 56  CIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDN-----SAALSTGGSIYRGNILKIPNITKTDRGTYYC 252
           G +V L C  +G P   ++W ++      S  + T  +      L I N+T  D GTY C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 253 VA 254
           V 
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIY-RGNILKIPNITKTDRGTYYCVAQN 256
           C A+G P P   W + N   L++   I      L+I  ++ +D G Y CVA+N
Sbjct: 21  CKASGNPRPAYRWLK-NGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAEN 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 26/95 (27%)

Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAAL-------------STGGSIYRG 234
             R V V+EG +V L C +++   + ++ W +                      G  ++G
Sbjct: 7   PPRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKG 66

Query: 235 NI------------LKIPNITKTDRGTYYCVAQNG 257
            +            L I N+  +D GTY C   N 
Sbjct: 67  RVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNP 101

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           LEC  E  P P I WIK G ++  ++          + F+ T L++  +     G+Y C 
Sbjct: 3   LECIAEGLPTPEISWIKIGGELPADR-------TKFENFNKT-LKIDNVSEEDDGEYRCT 54

Query: 353 AANKYGSAQKEI 364
           A+N  GSA+  I
Sbjct: 55  ASNSLGSARHTI 66

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 24/77 (31%)

Query: 293 LECHVEAYPPPAIVWIKDGVQIMNN----------QHYSVSHFATSDEFSDTSLRVITIE 342
           L+C     P P I W+KDG                + +++             L  +   
Sbjct: 14  LKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTL------------ILESVVPS 61

Query: 343 RRQFGQYACKAANKYGS 359
               G+Y C   NKYGS
Sbjct: 62  DS--GKYTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 20/76 (26%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           Q+  L C  +      + W+K          P+  S   +   S              L+
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDGK-------PLPESNRFVASGST-------------LT 42

Query: 148 IKEIQETDAGIYKCEV 163
           IK +   D+G+Y C  
Sbjct: 43  IKSVSLEDSGLYTCVA 58

Length = 63

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQ 345
           L     L C  + +P P + W KDG  I +  + YS +          + + ++ +++  
Sbjct: 17  LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE-------DGSEMTILDVDKLD 69

Query: 346 FGQYACKAANKYGSAQKEIEL 366
             +Y C A NK G  + EI L
Sbjct: 70  EAEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF--GQ 348
           A L C  E  P P I W+K+G  +  ++    SH       S   LRV+   + +   G 
Sbjct: 19  ATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78

Query: 349 YACKAANKYGSA 360
           Y C A N  G A
Sbjct: 79  YVCVAHNSLGEA 90

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSI--YRGNILKIPN-------ITKTDRGTYY 251
           V L C A G+P PTI W+                 G I  + N       + + D G Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 252 CVAQNGVG 259
           C   N VG
Sbjct: 61  CKVSNDVG 68

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 16/83 (19%)

Query: 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
           +G  +    +L C  E  PPP I W KDGV        ++       +  + SL + ++ 
Sbjct: 13  RGGPV----VLNCSAEGEPPPKIEWKKDGV------LLNLVSDERRQQLPNGSLLITSVV 62

Query: 343 RRQF-----GQYACKAANK-YGS 359
             +      G Y C A N   GS
Sbjct: 63  HSKHNKPDEGFYQCVAQNDSLGS 85

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 209 GFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268
            +P P I W ++         +   G+ L I ++T+ D G Y  V  N     +++ +  
Sbjct: 9   AYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQA-KLEKRLTF 67

Query: 269 E 269
            
Sbjct: 68  T 68

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143189 cd05712, Ig_Siglec_N, Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 94  CSVQYADDYPV------IWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPETSTY 144
           CS  Y  D+PV      IW K     K  P   + + S ++H+S   RF+L  D      
Sbjct: 21  CSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNC 80

Query: 145 ILSIKEIQETDAGIY 159
            L I + Q  D+G Y
Sbjct: 81  SLLISDAQPEDSGKY 95

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. Length = 119

>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN 317
           IA++  F  +   N       L         VEAYPPP I W+KD   ++ N
Sbjct: 3   IALKPTFGQLEFAN-------LHEVKEFVVEVEAYPPPQIRWLKDNRTLIEN 47

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDG--VQIMNNQHYSVSHFATSDE 330
           P+IT    +    L     +EC + + PPP  IVW      ++  ++  Y+V    +   
Sbjct: 3   PIITSEATQYA-ILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGG 61

Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              T     T E      Y C A N +GS    I L
Sbjct: 62  VLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 12/72 (16%)

Query: 92  LKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151
           L C         + W+K         L             R + +    + +  L+I  +
Sbjct: 3   LTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNV 50

Query: 152 QETDAGIYKCEV 163
              D+G Y C  
Sbjct: 51  TLEDSGTYTCVA 62

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)

Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIER---RQFG 347
            L CH++ +P P   W +DG  + + Q +YSVS    S E      R +T+        G
Sbjct: 2   TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS----SKE------RTLTLRSAGPDDSG 51

Query: 348 QYACKAANKYGSA 360
            Y C A N +GS 
Sbjct: 52  LYYCCAHNAFGSV 64

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              L+C  E  P P I W  +GV I                    +L +  ++      Y
Sbjct: 3   TGRLDCEAEGIPQPTITWRLNGVPIEE------LPPDPRRRVDGGTLILSNVQPNDTAVY 56

Query: 350 ACKAANKYG 358
            C A+N +G
Sbjct: 57  QCNASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
           EC     P PA  W+K+G Q + +++          E     LR+  +     G Y C A
Sbjct: 20  ECKASGNPRPAYRWLKNG-QPLASEN--------RIEVEAGDLRITKLSLSDSGMYQCVA 70

Query: 354 ANKYGSAQKEIEL 366
            NK+G+     EL
Sbjct: 71  ENKHGTIYASAEL 83

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 275 VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT 334
           V+TI    +G+ L     L C V   P P + W+K+   +  + HY+V       +    
Sbjct: 10  VVTI---MEGKTLN----LTCTVFGDPDPEVSWLKNDQALALSDHYNV-------KVEQG 55

Query: 335 SLRVITIER---RQFGQYACKAANKYGS 359
               +TI+       G+Y     NKYG 
Sbjct: 56  KYASLTIKGVSSEDSGKYGIVVKNKYGG 83

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           L C V   P P ++W K+   I  ++HYSV       +++  +++ +T E    G+Y+  
Sbjct: 21  LTCTVFGNPDPEVIWFKNDQDIELSEHYSVK--LEQGKYASLTIKGVTSEDS--GKYSIN 76

Query: 353 AANKYGSAQKEI 364
             NKYG    ++
Sbjct: 77  VKNKYGGETVDV 88

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI------YRGNILKIPNITKTDRG 248
           V    TV   C A G P PT+ W + N         I       +   L + ++  +D+G
Sbjct: 6   VPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 249 TYYCVAQNGVG 259
            Y CV +N  G
Sbjct: 65  NYTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDRGTYYCVA 254
           G+T  L C   G P P I+W  + +    T     R      L + ++  +D   Y C A
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 255 QN 256
           +N
Sbjct: 61  RN 62

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 201 VYLYCYANGFPAPTISWRRD----NSAALSTGGSIY-----RGNILKIPNITKTDRGTYY 251
           + L C A+G P P+I+WR      +S   +  G I      R + L +  I  TD G Y 
Sbjct: 20  ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79

Query: 252 CVAQNGVGRGMK 263
           C A N +G+  +
Sbjct: 80  CTASNTIGQDSQ 91

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 192 SVIVSEGQT---VYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKT 245
           S++  EG     V L C A   P  T  W+ + +       S Y    GN L I N  K 
Sbjct: 10  SLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGN-LVINNPQKA 68

Query: 246 -DRGTYYCVAQNGVGRGMKR 264
            D G+Y C+A N  G  + R
Sbjct: 69  RDAGSYQCLAINRCGTVVSR 88

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAA--LSTGGSIYRGNILKIPNITKT-DRGTYYC 252
           +EG+ V + C A   P P   WR++N      +   S+  GN L I N  K  D G Y C
Sbjct: 18  TEGK-VSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGN-LVINNPDKYKDAGRYVC 75

Query: 253 VAQNGVGR 260
           +  N  G+
Sbjct: 76  IVSNIYGK 83

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 16/107 (14%)

Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSH 324
           I +  E    I +N       L  +  L   VEAYPPP  I W  D   + N      + 
Sbjct: 3   INLSPEQNTTIFVN-------LGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL----TE 51

Query: 325 FATSDEFSDTS----LRVITIERRQFGQYACKAANKYGSAQKEIELF 367
             TS+  S+      L+++ ++  + G Y   A+N   S     EL+
Sbjct: 52  IVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELY 98

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 293 LECHVEAYPPPAIVWIKDGVQIM---NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            +C     P PAI W K+G Q +        S S F+ S       L +  ++R   G Y
Sbjct: 6   FQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYY 62

Query: 350 ACKAANKYGS 359
            C+  N  GS
Sbjct: 63  ICQTLNVAGS 72

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 209 GFPAPTISWRRDNSAALSTGGSIYRGNI--------LKIPNITKTDRGTYYCVAQNGVG 259
           G P PT++W +D      +G    R  I        L I N  ++D G Y    +N  G
Sbjct: 10  GRPTPTVTWSKDGKPLKLSG----RVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG 64

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 301 PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360
           P P + W KDG  +  +    +    T+     TSL +   ER   G+Y     N  G  
Sbjct: 12  PTPTVTWSKDGKPLKLSGRVQIE---TTASS--TSLVIKNAERSDSGKYTLTLKNPAGEK 66

Query: 361 QKEIEL 366
              I +
Sbjct: 67  SATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 19/69 (27%)

Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSIYRG------------NILKIPNITKTDRGTY 250
           L C A G P P I+W++D       GG+ +              ++  I ++   D G Y
Sbjct: 3   LECAATGHPTPQIAWQKD-------GGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVY 55

Query: 251 YCVAQNGVG 259
            C AQN  G
Sbjct: 56  SCTAQNTAG 64

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4194|consensus	873		100.0
PHA02785	326	IL-beta-binding protein; Provisional	99.98
KOG4222|consensus	1281		99.97
KOG4221|consensus	1381		99.97
KOG4222|consensus	1281		99.97
KOG4194|consensus	873		99.93
PHA02785	326	IL-beta-binding protein; Provisional	99.93
PHA02826	227	IL-1 receptor-like protein; Provisional	99.88
PHA02826	227	IL-1 receptor-like protein; Provisional	99.87
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.79
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.73
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.72
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.7
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.69
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.69
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.68
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.68
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.67
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.66
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.66
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.66
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.66
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.66
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.66
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.66
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.65
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.65
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.64
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.64
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.63
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.62
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.62
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.62
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.62
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.62
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.61
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.61
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.61
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.6
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.6
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.6
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.6
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.6
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.59
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.59
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.58
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.58
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.58
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.57
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.57
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.57
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.56
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.56
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.56
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.56
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.55
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.55
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.55
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.54
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.54
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.54
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.54
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.52
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.52
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.52
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.52
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.52
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.52
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.51
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.51
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.51
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.51
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.51
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.51
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.5
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.5
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.49
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.49
KOG3515|consensus	741		99.49
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.49
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.48
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.47
KOG3515|consensus	741		99.47
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.47
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.46
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.46
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.46
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.46
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.46
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.46
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.46
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.45
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.44
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.44
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.44
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.43
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.43
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.43
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.42
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.42
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.42
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.42
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.41
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.41
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.41
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.4
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.4
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.4
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.4
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.4
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.4
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.4
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.4
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.39
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.39
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.39
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.39
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.39
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.39
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.38
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.38
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.38
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.38
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.38
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.37
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.37
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.36
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.36
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.36
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.36
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.35
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.35
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.35
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.35
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.35
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.34
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.34
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.34
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.34
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.34
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.33
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.33
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.33
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.33
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.32
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.31
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.31
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.31
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.29
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.29
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.28
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.27
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.27
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.27
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.27
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.26
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.26
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.26
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.25
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.24
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.24
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.23
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.23
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.23
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.23
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.23
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.22
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.21
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	99.21
PHA03376	221	BARF1; Provisional	99.21
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.2
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.2
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.19
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.19
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.18
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.18
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.18
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.18
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	99.18
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.16
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.16
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.15
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.15
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	99.15
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	99.14
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.14
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	99.13
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.13
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.13
smart00409	86	IG Immunoglobulin.	99.12
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.12
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.12
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	99.12
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	99.11
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	99.11
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.11
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	99.1
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.09
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	99.09
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	99.07
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.07
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.07
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.06
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.05
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.04
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.04
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.04
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.04
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.03
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.02
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.01
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.01
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.99
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.99
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.99
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.99
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.99
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.99
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.99
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.99
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.99
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.97
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.97
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.97
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.96
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.95
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.93
PHA03376	221	BARF1; Provisional	98.93
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.92
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.9
smart00409	86	IG Immunoglobulin.	98.9
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.9
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.89
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.88
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.88
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.87
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.87
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.87
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.87
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.87
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.85
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.85
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.85
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.84
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.84
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.83
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.83
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.82
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.81
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.81
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.8
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.79
PHA03269	566	envelope glycoprotein C; Provisional	98.76
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.75
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.75
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.72
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.71
PHA03270	466	envelope glycoprotein C; Provisional	98.68
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.68
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.67
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.64
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.64
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.63
smart00406	81	IGv Immunoglobulin V-Type.	98.63
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.62
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.61
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.59
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.59
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.59
PHA03273	486	envelope glycoprotein C; Provisional	98.59
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.57
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.57
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.56
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.56
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.56
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.54
PHA03271	490	envelope glycoprotein C; Provisional	98.54
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.52
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.51
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.5
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.48
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.47
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.45
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	98.45
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.44
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.43
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.41
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.35
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.33
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.33
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.31
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.29
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.29
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.28
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.28
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.27
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.26
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.24
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.24
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.23
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.23
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.22
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.21
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.17
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.17
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.16
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	98.15
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.15
smart00407	75	IGc1 Immunoglobulin C-Type.	98.14
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.13
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.12
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.12
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.1
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.09
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.08
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.06
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.99
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.95
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.93
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.92
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.91
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.89
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.87
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.85
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.84
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.81
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.81
KOG1480|consensus	909		97.8
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.8
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.77
smart00407	75	IGc1 Immunoglobulin C-Type.	97.74
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.74
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.71
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.7
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.69
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.66
PHA02982	251	hypothetical protein; Provisional	97.65
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.64
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.64
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.63
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.63
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.62
PHA03271	490	envelope glycoprotein C; Provisional	97.6
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.6
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.54
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.53
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.53
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.5
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.43
smart00406	81	IGv Immunoglobulin V-Type.	97.42
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.41
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.38
PHA03270	466	envelope glycoprotein C; Provisional	97.36
PHA02633	63	hypothetical protein; Provisional	97.34
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.32
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.27
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.2
PHA03269	566	envelope glycoprotein C; Provisional	97.17
PHA03273	486	envelope glycoprotein C; Provisional	97.17
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.16
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.04
KOG1480|consensus	909		97.01
PHA02982	251	hypothetical protein; Provisional	96.96
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.96
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.95
PHA02633	63	hypothetical protein; Provisional	96.93
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.86
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.69
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.62
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.41
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	96.3
PHA03042	286	CD47-like protein; Provisional	96.25
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.82
PHA03042	286	CD47-like protein; Provisional	95.78
KOG4597|consensus	560		95.56
PHA03189	348	UL14 tegument protein; Provisional	95.39
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	95.37
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.32
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.27
KOG0613|consensus	1205		94.82
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.61
KOG4597|consensus	560		94.36
PHA03283	542	envelope glycoprotein E; Provisional	93.89
PHA03283	542	envelope glycoprotein E; Provisional	93.49
PHA03282	540	envelope glycoprotein E; Provisional	93.4
KOG1026|consensus	774		93.32
KOG0613|consensus	1205		93.29
PHA03286	492	envelope glycoprotein E; Provisional	93.07
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.06
PHA02865	338	MHC-like TNF binding protein; Provisional	93.06
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.86
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	92.66
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.58
PHA03286	492	envelope glycoprotein E; Provisional	92.33
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	91.91
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	91.19
PHA03281	642	envelope glycoprotein E; Provisional	90.03
PRK14081	667	triple tyrosine motif-containing protein; Provisio	90.01
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	89.92
PHA02865	338	MHC-like TNF binding protein; Provisional	89.89
PHA03189	348	UL14 tegument protein; Provisional	89.88
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	88.14
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	86.17
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	85.2
PHA03052	69	Hypothetical protein; Provisional	84.73
PHA03281	642	envelope glycoprotein E; Provisional	84.16
PHA03112	141	IL-18 binding protein; Provisional	82.52
KOG0200|consensus	609		82.18
PHA03052	69	Hypothetical protein; Provisional	81.36

>KOG3513|consensus

Probab=100.00  E-value=5.1e-46  Score=338.69  Aligned_cols=344  Identities=21%  Similarity=0.309  Sum_probs=281.9

Q ss_pred             CCCCCCcchhccccCCCCCC--CCCCCCceEEEEEeeecceEEEEEEEeeec-cchhHHHHHHHH--HhhhhcccCCCCe
Q psy16652          1 FIAPSPFDFVNRFQNTSTPW--DPSTQKPIRFFIHEVTGEKVTSVILLFKMS-VAGPSIIVALSF--LISLASSQRTPTI   75 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~-~~~~~~~~~~~~--~~~~~~~~~~p~~   75 (384)
                      ||.++|+|++|+|+++.+.-  +...+..+.|.+.+|+.+|.+.|.|.+... .........+.+  .........+|.|
T Consensus       164 ~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i  243 (1051)
T KOG3513|consen  164 FPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKI  243 (1051)
T ss_pred             CCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCcc
Confidence            78999999999999998775  566788999999999999999999998763 111111000101  1122233445665


Q ss_pred             eeeCc-ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         76 SYISQ-EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        76 ~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ..... ......|+.|.|.|.+.|.|.+++.|.|.+....               .++...    .....+|.|.+++.+
T Consensus       244 ~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~---------------~~r~~~----~~~~~vL~I~nv~~~  304 (1051)
T KOG3513|consen  244 LVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP---------------PRRATY----SNYGKVLKIPNVQYE  304 (1051)
T ss_pred             ccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC---------------Ccceee----eccccEEEecccCcC
Confidence            55444 5568899999999999999999999999887421               111111    233458999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---ee
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SI  231 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~  231 (384)
                      |+|.|+|.+.|..+ .....+.|.|..+|.... .+....+..|+++.+.|.+.|.|.|+++|.+++.++.....   ..
T Consensus       305 D~G~Y~C~AeN~~G-~~~~~~~v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~  382 (1051)
T KOG3513|consen  305 DAGEYECIAENSRG-SATHSGHVTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYK  382 (1051)
T ss_pred             CCeEEEEEEecccc-cceeeEEEEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceE
Confidence            99999999997665 788899999999998875 46677889999999999999999999999999999887666   67


Q ss_pred             EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec-CeEEecCCCc--ccccCCcEEEEEEEeccCCCeEEEE
Q psy16652        232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA-PVITINRPRQ--GQALQYDAILECHVEAYPPPAIVWI  308 (384)
Q Consensus       232 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~v~W~  308 (384)
                      ...++|.|.+++..|+|.|.|.|+|..|.. ...+.|.|... |.+...+...  .+..|..+.|.|...+.|.|.+.|.
T Consensus       383 i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~  461 (1051)
T KOG3513|consen  383 IDDGTLIISNVQESDSGVYQCIAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL  461 (1051)
T ss_pred             EeCCEEEEEecccccCeEEEeeeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence            788999999999999999999999999986 67788888765 7777666553  6788999999999999999999999


Q ss_pred             ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652        309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG  374 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  374 (384)
                      +++..+.+++++.+.        .+++|.|.+++.+|+|.|+|.|+|..|..+.+..|.|++++..
T Consensus       462 k~~~~~~~~~r~~i~--------edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri  519 (1051)
T KOG3513|consen  462 KGGEKLLQSGRIRIL--------EDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI  519 (1051)
T ss_pred             cCCcccccCceEEEC--------CCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE
Confidence            999988888888876        4889999999999999999999999999999999999988543

>KOG3513|consensus

Probab=100.00  E-value=7.1e-42  Score=311.80  Aligned_cols=348  Identities=22%  Similarity=0.300  Sum_probs=273.9

Q ss_pred             CCCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          1 FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      +|-|.|.|.+++-+-.... -....-+..|.|.+++.+|+|.|.|.+.+..+.....       .......+|.+...++
T Consensus       268 ~P~P~i~W~k~~g~~~~~r-~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~-------~~v~v~a~P~w~~~~~  339 (1051)
T KOG3513|consen  268 NPTPQIKWRKVDGKPPPRR-ATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHS-------GHVTVYAPPYWLQKPQ  339 (1051)
T ss_pred             CCCCcEEEEeCCCCCCCcc-eeeeccccEEEecccCcCCCeEEEEEEecccccceee-------EEEEEecCchhhcccc
Confidence            4789999999975422111 1223456799999999999999999999875532221       1123567889999999


Q ss_pred             ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      +..+..|++++|.|.+.+.|.+.+.|++++..+...           ....++.+...      +|.|.+++.+|+|.|+
T Consensus       340 d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~-----------~r~~~~~i~~g------~L~is~v~~~dsg~YQ  402 (1051)
T KOG3513|consen  340 DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPA-----------ERDPRYKIDDG------TLIISNVQESDSGVYQ  402 (1051)
T ss_pred             eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCcc-----------CCCcceEEeCC------EEEEEecccccCeEEE
Confidence            999999999999999999999999999998763211           12234555442      7999999999999999


Q ss_pred             EEEEEccCcceeeeEEEEEecC-CccccCCC-ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEE
Q psy16652        161 CEVIISLNNKVSAEVELIVRRP-PIISDNST-RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNIL  237 (384)
Q Consensus       161 C~~~~~~~~~~~~~~~l~v~~~-~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l  237 (384)
                      |.+.|. .+.....+.|.|... |.+..... ....+..|..+.|.|...+.|.+.+.|.++++.+....+. ...+++|
T Consensus       403 C~A~Nk-~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL  481 (1051)
T KOG3513|consen  403 CIAENK-YGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTL  481 (1051)
T ss_pred             eeeecc-cceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcE
Confidence            999854 456777788888765 55554333 3356889999999999999999999999998844444443 3478899


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEec
Q psy16652        238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIM  315 (384)
Q Consensus       238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~  315 (384)
                      .|.+++.+|+|.|+|.|+|..|.. ..+..|.|+.++.+...+....+..|+.+.|.|.+...+..  .|.|.+||..+.
T Consensus       482 ~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id  560 (1051)
T KOG3513|consen  482 EISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPID  560 (1051)
T ss_pred             EecccCcccCcEEEEEEEcccCcc-ceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhh
Confidence            999999999999999999999997 78899999999999998888999999999999999765544  799999999885


Q ss_pred             CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652        316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET  377 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  377 (384)
                      .......-...  .....+.|+|.+++.+|+|.|.|.|.-..-+.++...|.|.++|.+|+.
T Consensus       561 ~~~~~~~~~~~--~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~  620 (1051)
T KOG3513|consen  561 FNPDGDHFEIN--DGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPD  620 (1051)
T ss_pred             ccCCCCceEEe--CCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCc
Confidence            54321111111  1112267999999999999999999999999999999999999988763

>KOG4221|consensus

Probab=100.00  E-value=1.6e-35  Score=269.51  Aligned_cols=336  Identities=24%  Similarity=0.297  Sum_probs=262.5

Q ss_pred             CCCCcchhccccCCCC-CCCCCCCCceEEEEEeeec-----ceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee
Q psy16652          3 APSPFDFVNRFQNTST-PWDPSTQKPIRFFIHEVTG-----EKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS   76 (384)
Q Consensus         3 ~~~~~w~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~-----~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   76 (384)
                      +.+++|-+++.+..+. ...+....+++|.|.++-.     -|.|.|.|.++...-+...     .-.........+.+.
T Consensus        70 ~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~-----Sr~a~v~~a~~~~f~  144 (1381)
T KOG4221|consen   70 SVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSIL-----SRTAKVALAGLADFA  144 (1381)
T ss_pred             CeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceee-----cceEEEEecccCccc
Confidence            4678999776555542 2344457899999999988     8999999998875111111     001111233455677


Q ss_pred             eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      ..+.+..+..|+++.|.|.+.+.+.+.+.|.+++..+              ..++|+....     +..|.|.+++++|.
T Consensus       145 ~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl--------------~~~~r~i~lp-----sG~L~I~~~qp~d~  205 (1381)
T KOG4221|consen  145 LQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPL--------------PLDSRVIVLP-----SGALEISGLQPSDT  205 (1381)
T ss_pred             cCccceeEecCCcEEEEEEEcCccCceeEEecccccc--------------cCCCcEEEcC-----CCcEEecccccCCC
Confidence            7788888999999999999988777789999987642              2334444333     23699999999999


Q ss_pred             eeEEEEEEEccCcceeeeEEEEEecCCc-----cccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee
Q psy16652        157 GIYKCEVIISLNNKVSAEVELIVRRPPI-----ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI  231 (384)
Q Consensus       157 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~  231 (384)
                      |.|+|.+.+......+....|.|...+.     .....+....+.+|+++.|.|.+.+.|.|.|.|.+++..+.....+.
T Consensus       206 g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~ri  285 (1381)
T KOG4221|consen  206 GEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRI  285 (1381)
T ss_pred             ceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEE
Confidence            9999999876666667788888873332     12244667788999999999999999999999999998877664332


Q ss_pred             --EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE
Q psy16652        232 --YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK  309 (384)
Q Consensus       232 --~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~  309 (384)
                        ...+.|.|.+++..|+|.|+|.|+|..... .....|+|..+|.+...+....+.++.++.+.|.+.|.|.|.+.|++
T Consensus       286 vl~g~~slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k  364 (1381)
T KOG4221|consen  286 VLVGGSSLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK  364 (1381)
T ss_pred             EEecccceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe
Confidence              235689999999999999999999954443 56688889999999888888888999999999999999999999999


Q ss_pred             CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      ||..+..++.+.+..        ...|.|..+-..|.|.|.|.++|..|...+...|.+..+
T Consensus       365 Ngd~~ipsdy~ki~~--------~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  365 NGDRIIPSDYFKIVG--------GGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQ  418 (1381)
T ss_pred             cCcccCcccceEecC--------CCCcEEEEEecccchhhhhhhccCcccccchhhheeccC
Confidence            999888777777653        334999999999999999999999999998888865554

>KOG4194|consensus

Probab=100.00  E-value=3.5e-33  Score=237.92  Aligned_cols=293  Identities=23%  Similarity=0.379  Sum_probs=232.4

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      ...+|.|...|..+.+..|+.++|+|.+.+  ..+..+.|.+++.... .  .............|.....+...-...|
T Consensus       500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~-r--v~ved~a~~~~q~r~~~~~e~~~~~~~L  576 (873)
T KOG4194|consen  500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQP-R--VDVEDFATFLSQNRNGTFGEREEYTAIL  576 (873)
T ss_pred             CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCc-c--cchhcchhhhhhhccCccchhhhhhhee
Confidence            445678888899999999999999999976  3567899999876421 1  1111100000111100011112233469


Q ss_pred             EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS  226 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~  226 (384)
                      .+.+|+..|.|.|+|.++|..+...+..+++.|...|.+.. .|....+..|+.+.|.|.+.|.|.|++.|.++|....+
T Consensus       577 ~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtk-tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP  655 (873)
T KOG4194|consen  577 HLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTK-TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP  655 (873)
T ss_pred             eeeeeecccCceEEEEEecccCcchhheeEEEeeccCcccc-CcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence            99999999999999999999998999999999999888874 47788899999999999999999999999999876433


Q ss_pred             cCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652        227 TGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYP  301 (384)
Q Consensus       227 ~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  301 (384)
                      ...     ....+..+.|.++..+|.|.|+|.|.|..|.. +...++.|...|.+.++-....+..|+.+.|.|.+.+.|
T Consensus       656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~  734 (873)
T KOG4194|consen  656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAP  734 (873)
T ss_pred             hhhhheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCC
Confidence            321     12246789999999999999999999999986 889999999999998888888899999999999999988


Q ss_pred             C-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        302 P-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       302 ~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      . |.+.|+++++++.-.++..+..       .+.-|.+.....+|+|.|+|...|..|.-...+.+.+...+.
T Consensus       735 a~pr~~W~k~d~pil~t~rh~f~d-------~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  735 ADPRLEWFKEDKPILITERHTFPD-------GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK  800 (873)
T ss_pred             CCccccccCCCCceEEeecccCCC-------CCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence            8 8999999999987777655543       455678888999999999999999999998888887766543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.98  E-value=2e-29  Score=214.07  Aligned_cols=268  Identities=16%  Similarity=0.226  Sum_probs=179.1

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEe-----ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSV-----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI  145 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (384)
                      .+..+........+.+|+.+.|.|..     .+.+.+.++|+|++....                ..+.+     .....
T Consensus        25 ~c~~~~~~~~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~----------------~~~~~-----~~g~~   83 (326)
T PHA02785         25 ECIDKGQYFASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND----------------RIIPI-----DNGSN   83 (326)
T ss_pred             CchhcccccchhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc----------------eEEEc-----cCCce
Confidence            34444444455567899999999997     456778999999864210                00000     01124


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC--ccccCCCceEEeecCceEEEEEEe-----cccCCCeEEEE
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP--IISDNSTRSVIVSEGQTVYLYCYA-----NGFPAPTISWR  218 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~v~W~  218 (384)
                      |.|.++..+|+|.|+|.++|.. +.....+.|.|....  .+.. ......+.+|..+.|.|..     .+.+.+.+.|+
T Consensus        84 l~i~~~~~~DsG~Y~C~a~N~~-g~~~~s~~L~V~~~~~~~~~~-~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~  161 (326)
T PHA02785         84 MLILNPTQSDSGIYICITKNET-YCDMMSLNLTIVSVSESNIDL-ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWS  161 (326)
T ss_pred             EEEcccCcccCeEEEEEEECCC-cceEEEEEEEEEecCCCccce-eeccceecccCcEEEECCChhhcccCCCCceEEEc
Confidence            7899999999999999998654 445566677665432  2211 1223446789999999972     35678899998


Q ss_pred             eCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce---eeEEEEEEEe---cCeEEecCCCcccccCCcEE
Q psy16652        219 RDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM---KRNIAVEVEF---APVITINRPRQGQALQYDAI  292 (384)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~  292 (384)
                      ++.. +.........++.|.|.+++.+|+|.|+|.+.|..+...   ...+.|.|..   +|.+ ..+....+..|+.++
T Consensus       162 k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~  239 (326)
T PHA02785        162 GHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLT  239 (326)
T ss_pred             cCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEE
Confidence            7542 222111222356899999999999999999999776542   2334455542   3433 334556677899999


Q ss_pred             EEEEEeccCCC---eEEEEECCEEecCCC-----ceeeeeee---ccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        293 LECHVEAYPPP---AIVWIKDGVQIMNNQ-----HYSVSHFA---TSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       293 l~C~~~~~p~~---~v~W~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      |.|.+.|.|.+   .+.|++||..+...+     ++......   .........|+|.+++.+|.|.|+|.|.|..|...
T Consensus       240 L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        240 IACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             EEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            99999998864   799999999885432     11111100   00111246799999999999999999999986554


Q ss_pred             EE
Q psy16652        362 KE  363 (384)
Q Consensus       362 ~~  363 (384)
                      ..
T Consensus       320 ~~  321 (326)
T PHA02785        320 TV  321 (326)
T ss_pred             ee
Confidence            43

>KOG4222|consensus

Probab=99.97  E-value=7.2e-31  Score=238.14  Aligned_cols=338  Identities=21%  Similarity=0.301  Sum_probs=256.1

Q ss_pred             CCCCCcchhccccCCCCC--CCCCCCCceEEEEEeee-----cceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCC
Q psy16652          2 IAPSPFDFVNRFQNTSTP--WDPSTQKPIRFFIHEVT-----GEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPT   74 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~~~~-----~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   74 (384)
                      |.++++||+++-+.+...  ..+-....++|.+..+.     ..|.|.|+|...+........     ...+......-.
T Consensus        59 ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr-----~a~L~vavlrdd  133 (1281)
T KOG4222|consen   59 PPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSR-----GASLIVAVLRDD  133 (1281)
T ss_pred             CCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeec-----CceEEEEEechh
Confidence            678999999984433322  23334455666665543     339999999988764332221     111112223335


Q ss_pred             eeeeCcceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      +.+.+....+..|+.+.|.|.- .+.+.+.+.|.|+++.+.            .....++.+..     ...|.|.+++.
T Consensus       134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~------------~~~~~~~~lis-----gG~LlIsnvrk  196 (1281)
T KOG4222|consen  134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD------------HYDVPIIALIS-----GGNLLISNVRK  196 (1281)
T ss_pred             cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccc------------cccceeEEEec-----CCcEEEecccc
Confidence            6667778888999999999986 456888999999988642            00111221111     22599999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR  233 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~  233 (384)
                      .|+|.|.|.+.|..+...+...+|.|+++|.+.. .+....+..|..+.+.|.+.|.|.+++.|.+++..+.........
T Consensus       197 sD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~-rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~  275 (1281)
T KOG4222|consen  197 SDEGTYACVATNMVGERESIPARLSVQEKPWFWK-RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD  275 (1281)
T ss_pred             CCCceeeeeecccccccccccceeeeccCCcccc-ccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeee
Confidence            9999999999988888889999999999998874 366778899999999999999999999999977766655444444


Q ss_pred             c-cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCE
Q psy16652        234 G-NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV  312 (384)
Q Consensus       234 ~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~  312 (384)
                      . .+|.|.+++..|.|.|.|.+.|..|.. .....++|+.+|.+...+....+..|..++|.|.+.|+|.|.+.|.+.|.
T Consensus       276 d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~  354 (1281)
T KOG4222|consen  276 DTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGS  354 (1281)
T ss_pred             ccccccccccCCCcccceeeecccccccc-ccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCc
Confidence            4 799999999999999999999999886 77889999999999988888899999999999999999999999999774


Q ss_pred             Eec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        313 QIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       313 ~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      ..-        .+.+..+.        ...+|+|.+++..|.|.|.|...+..|+......+.+...
T Consensus       355 q~llf~~~p~~~~~r~svs--------~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~  413 (1281)
T KOG4222|consen  355 QDLLFSASPPSSNGRGSVS--------PTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV  413 (1281)
T ss_pred             ceecccCCCCCcCccceec--------CCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence            321        11222222        3458999999999999999999998888776666655554

>KOG4221|consensus

Probab=99.97  E-value=2.4e-28  Score=223.26  Aligned_cols=284  Identities=21%  Similarity=0.337  Sum_probs=219.3

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ..+.+++.+.  .+|.++.|.|.....  ....+.|.+++..+..            ..+.+.+     .-.+.+|.|.+
T Consensus        42 ~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e------------~~d~~~~-----~LsNgSl~i~~  102 (1381)
T KOG4221|consen   42 LQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNE------------VYDDRRQ-----LLSNGSLYISS  102 (1381)
T ss_pred             ceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhh------------hhhhHHh-----hccCCceeEee
Confidence            3455556543  889999999998543  3779999987754211            1112211     22334688888


Q ss_pred             cCC-----CCCeeEEEEEEEc-cCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652        151 IQE-----TDAGIYKCEVIIS-LNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA  224 (384)
Q Consensus       151 ~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~  224 (384)
                      +..     -|.|.|+|.+... .+...+..+.|.+...+.+... .....+..|+++.|.|.+++.+.+.+.|.+++.++
T Consensus       103 v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~-~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl  181 (1381)
T KOG4221|consen  103 VLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQ-PESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPL  181 (1381)
T ss_pred             ecccccccccCceEEEEEEccccceeecceEEEEecccCccccC-ccceeEecCCcEEEEEEEcCccCceeEEecccccc
Confidence            876     8899999999855 3345677788888776666543 45567899999999999999888899999999866


Q ss_pred             cccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC------eEEecCCCcccccCCcEEEEEEE
Q psy16652        225 LSTGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP------VITINRPRQGQALQYDAILECHV  297 (384)
Q Consensus       225 ~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~  297 (384)
                      ...... ...++.|.|.+++..|.|.|+|.+++......+....|.|...|      .|...+....+..|+++.|.|.+
T Consensus       182 ~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv  261 (1381)
T KOG4221|consen  182 PLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV  261 (1381)
T ss_pred             cCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe
Confidence            655543 34678999999999999999999999877766777888887444      24456677888999999999999


Q ss_pred             eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652        298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET  377 (384)
Q Consensus       298 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  377 (384)
                      .|.|.|.|.|.+||..+..+. +.+..      ...+.|.|.+++..|+|.|+|.|+|..-+.++..+|.|..+|..+..
T Consensus       262 s~~p~p~v~Wlrng~~i~~ds-~rivl------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~  334 (1381)
T KOG4221|consen  262 SGVPKPSVKWLRNGEKISVDS-YRIVL------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKA  334 (1381)
T ss_pred             cCCCCCceEEeeCCeeeeecc-eEEEE------ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCC
Confidence            999999999999999997665 33322      14678999999999999999999998888888999999999877766


Q ss_pred             CCcccc
Q psy16652        378 FPIFYA  383 (384)
Q Consensus       378 ~~~~~~  383 (384)
                      +-.++|
T Consensus       335 p~~l~A  340 (1381)
T KOG4221|consen  335 PTTLVA  340 (1381)
T ss_pred             Ccceee
Confidence            655554

>KOG4222|consensus

Probab=99.97  E-value=1.7e-29  Score=229.38  Aligned_cols=338  Identities=23%  Similarity=0.331  Sum_probs=257.7

Q ss_pred             CCCCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652          1 FIAPSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS   79 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   79 (384)
                      ||-+.+.|.++..+..-.. -.+..-.++.|.|.++...|+|+|.|..++..+.......-      .....+|.+...+
T Consensus       159 hpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~------lsv~e~P~f~~rp  232 (1281)
T KOG4222|consen  159 HPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPAR------LSVQEKPWFWKRP  232 (1281)
T ss_pred             CCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccce------eeeccCCcccccc
Confidence            4667889999877766111 11222356789999999999999999988754433332111      2345788899999


Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ....|.+|..+.+.|.+.+.|.+.+.|.+.+..               ....||.+..+.    .+|.|.+++..|.|.|
T Consensus       233 ~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~---------------~P~~ry~i~~d~----qtl~i~r~tp~deg~y  293 (1281)
T KOG4222|consen  233 KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS---------------LPRSRYSILDDT----QTLRIDRVTPTDEGTY  293 (1281)
T ss_pred             ccceeecccccccccccCCCCCCceeeeccCCC---------------CCccceeeeecc----ccccccccCCCcccce
Confidence            999999999999999999999999999996554               456777777642    3699999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc---------Cce
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST---------GGS  230 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---------~~~  230 (384)
                      .|.+.+.. +.......++|..+|.+... +....+..|..++|.|.+.+.|.+.+.|.+.+......         ...
T Consensus       294 ~C~a~n~v-G~l~asa~ltV~apP~f~kk-p~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~s  371 (1281)
T KOG4222|consen  294 VCPAENLV-GGLEASATLTVQAPPSFGKK-PRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGS  371 (1281)
T ss_pred             eeeccccc-cccccccceEEecCcccccc-cCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccce
Confidence            99998655 44677778899998887754 44455778999999999999999999999987543221         111


Q ss_pred             eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE------ecCeEEecCCCcccccCCcEEEEEEEeccCCCe
Q psy16652        231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE------FAPVITINRPRQGQALQYDAILECHVEAYPPPA  304 (384)
Q Consensus       231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  304 (384)
                      +...+.|.|.+++..|.|.|.|...+..+....+....++.      -+|.+...+.+....++..+.|.|.+.+.|.+.
T Consensus       372 vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~  451 (1281)
T KOG4222|consen  372 VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPN  451 (1281)
T ss_pred             ecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCC
Confidence            22345899999999999999999877666554333333322      244555566777888899999999999999999


Q ss_pred             EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       305 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      +.|.++|..+...+.....       .....|+|.+....|.|.|+|.|.+..|...-+..|.|.+.-
T Consensus       452 i~wl~dg~~v~~~d~~~s~-------~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~  512 (1281)
T KOG4222|consen  452 ISWLKDGCNVMNPDSRISQ-------QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAG  512 (1281)
T ss_pred             chhhhcccccccCCcccce-------eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcC
Confidence            9999999887655532222       246789999999999999999999999998888888776653

>KOG4194|consensus

Probab=99.93  E-value=1.3e-24  Score=186.13  Aligned_cols=227  Identities=19%  Similarity=0.303  Sum_probs=175.8

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccE
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPV  104 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v  104 (384)
                      .-..-|.+.||+.+|+|.|.|.+++.++..+..-      .-......|.++..|.+..+..|+.+.|.|.++|.|.+.+
T Consensus       571 ~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk------~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeI  644 (873)
T KOG4194|consen  571 EYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQK------AKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEI  644 (873)
T ss_pred             hhhheeeeeeeecccCceEEEEEecccCcchhhe------eEEEeeccCccccCcccceeecccceeeeeeccCCCCcce
Confidence            3456789999999999999999999877655421      1112345789999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652        105 IWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI  184 (384)
Q Consensus       105 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  184 (384)
                      .|.+.+...-+           ...+.|..+..+.+    .+.|.|++.+|.|.|+|.+++. .|..+....|.|.+.|.
T Consensus       645 awqkdggtdFP-----------AA~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~-AG~isanAtL~V~e~p~  708 (873)
T KOG4194|consen  645 AWQKDGGTDFP-----------AARERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNV-AGQISANATLTVLETPS  708 (873)
T ss_pred             eehhcCCCCCc-----------hhhhheeeecCCCC----EEEEecccccccceeEEeeecc-ccceeeceEEEEecCCc
Confidence            99998764211           12345555554322    6999999999999999999854 56678888999998887


Q ss_pred             cccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccccCcee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        185 ISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALSTGGSI--YRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       185 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      .... .....+..|+++.|.|.+.+.|. |++.|+|+++++....+..  ..+.-|.+.+...+|+|.|+|.+.+..+..
T Consensus       709 f~~P-L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~  787 (873)
T KOG4194|consen  709 FSIP-LEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTE  787 (873)
T ss_pred             cccc-ccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccce
Confidence            7643 55667899999999999998777 8999999999887655333  234578888999999999999999988875


Q ss_pred             eeeEEEEEEEecCe
Q psy16652        262 MKRNIAVEVEFAPV  275 (384)
Q Consensus       262 ~~~~~~l~v~~~p~  275 (384)
                       ...+.+.+...+.
T Consensus       788 -~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  788 -RIHICLLVYQKKK  800 (873)
T ss_pred             -eeEEEEEEeecCC
Confidence             4444444444443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=7.5e-25  Score=186.24  Aligned_cols=229  Identities=20%  Similarity=0.260  Sum_probs=148.1

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      |.+.+.|++|+.....   ......+..|.|.+++.+|+|.|+|.+.+..........+    .. ....++.+...+.+
T Consensus        59 p~~~i~W~K~g~~~~~---~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L----~V-~~~~~~~~~~~~~~  130 (326)
T PHA02785         59 NILDILWEKRGADNDR---IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNL----TI-VSVSESNIDLISYP  130 (326)
T ss_pred             CCceEEEEECCCccce---EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEE----EE-EecCCCccceeecc
Confidence            4577999999632110   0111234468999999999999999998754221111000    00 01122333333444


Q ss_pred             eeeeccCcEEEEEEe-----ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         82 QIKDIAQTADLKCSV-----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      ..+.+|+.+.|.|..     .+.+.+.++|++...                ....++....     +..|.|.+++.+|+
T Consensus       131 ~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~----------------~~~~r~~~~~-----~~~L~i~~v~~~d~  189 (326)
T PHA02785        131 QIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR----------------LRNKRLKQRT-----PGIITIEDVRKNDA  189 (326)
T ss_pred             ceecccCcEEEECCChhhcccCCCCceEEEccCCc----------------cCCcceEecC-----CCeEEEeecChhhC
Confidence            557899999999972     345778999987421                1223333321     23799999999999


Q ss_pred             eeEEEEEEEccCcce---eeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCC---eEEEEeCCCccccc
Q psy16652        157 GIYKCEVIISLNNKV---SAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALST  227 (384)
Q Consensus       157 G~Y~C~~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~  227 (384)
                      |.|+|.+.+..++..   +..+.|.|..   +|.+  ..+....+..|+.+.|.|.+.+.|.+   .+.|++++..+...
T Consensus       190 G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~--~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~  267 (326)
T PHA02785        190 GYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM--QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED  267 (326)
T ss_pred             eEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee--cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence            999999997655432   3344555543   2222  22455667789999999999987754   79999998765332


Q ss_pred             C----ce-------------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        228 G----GS-------------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       228 ~----~~-------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      .    ..             ......|.|.+++.+|+|.|+|.|.|..+..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            1    01             0113579999999999999999999977543

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.88  E-value=2.7e-21  Score=154.16  Aligned_cols=154  Identities=18%  Similarity=0.333  Sum_probs=115.5

Q ss_pred             ceEEeecCceEEEEEEecccC-----------CCeEEEEeCCCcccc--c-----------CceeEeccEEEEcCCCCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP-----------APTISWRRDNSAALS--T-----------GGSIYRGNILKIPNITKTD  246 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~-----------~~~v~W~~~~~~~~~--~-----------~~~~~~~~~l~i~~~~~~d  246 (384)
                      ....+.+|+++.|.|.+.+++           .+++.|++.+....-  .           .....++..|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            446688999999999986643           348999998753210  0           0111235689999999999


Q ss_pred             CeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-----cCCCeEEEEECCEEecCCCcee
Q psy16652        247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-----YPPPAIVWIKDGVQIMNNQHYS  321 (384)
Q Consensus       247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~  321 (384)
                      +|.|+|.+.|..+.. ...+.|.|..++      ....+.+|+.+.|.|.+.+     .|.|++.|+++|.++..+.++.
T Consensus       110 sG~Y~C~a~N~~~~~-~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~  182 (227)
T PHA02826        110 EGIYICTISSGNICE-ESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ  182 (227)
T ss_pred             CEEEEEEEEECCcce-EEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence            999999999977654 566666664322      2345678999999999853     4678999999999997666655


Q ss_pred             eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      +..       ....|.|.+++.+|+|.|+|.|+...+
T Consensus       183 ~~~-------~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        183 LRN-------NNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             EeC-------CCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            432       356899999999999999999998753

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.87  E-value=1e-20  Score=150.82  Aligned_cols=172  Identities=20%  Similarity=0.259  Sum_probs=115.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-----------CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-----------DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-  138 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  138 (384)
                      .+........+..+.+|++|.|.|.+.+.           ..+.+.|+|.+..     ..+...+. ...  ...+... 
T Consensus        21 ~c~~~~~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~-----~~v~~~~~-~~~--~~~i~~~~   92 (227)
T PHA02826         21 YCKYRGGDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL-----AFVRDSGA-RTK--IKKITHNE   92 (227)
T ss_pred             cchhhCcCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE-----EEEEcCCC-ccc--cccccccc
Confidence            34344444566778999999999997542           3458999997532     00100000 000  0000000 


Q ss_pred             CCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-----ccCCC
Q psy16652        139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-----GFPAP  213 (384)
Q Consensus       139 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~~~~  213 (384)
                      .......|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..++       ....+.+|+.+.|.|.+.     +.|.|
T Consensus        93 ~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~-~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p  164 (227)
T PHA02826         93 IGDRSENLWIGNVINIDEGIYICTISSGN-ICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDY  164 (227)
T ss_pred             eecCCCeEEECCCChHHCEEEEEEEEECC-cceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCc
Confidence            01224579999999999999999999744 556667777774321       234567899999999985     24578


Q ss_pred             eEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        214 TISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       214 ~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      ++.|++++..+........  .+..|.|.+++.+|+|.|+|.+....
T Consensus       165 ~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        165 TLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             eEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            9999999988765444332  34589999999999999999999753

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.79  E-value=1.9e-18  Score=119.64  Aligned_cols=97  Identities=20%  Similarity=0.240  Sum_probs=83.1

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |.+...+....+..|+.+.|.|.+.|.|++.+.|+++|..+..+.++.+...     ...+.|+|.++..+|+|.|+|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~-----~~~s~L~I~~~~~~D~G~Ytc~a   75 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENT-----ENSSKLTITEGQQEHCGCYTLEV   75 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEec-----CCeeEEEECCCChhhCEEEEEEE
Confidence            4455566677889999999999999999999999999999987766554421     13578999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeeecCC
Q psy16652        354 ANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      .|..|...+++.|.|.++|.+|
T Consensus        76 ~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          76 ENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EcCCCceeEEEEEEEecCCCCC
Confidence            9999999999999999998665

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.73  E-value=3.9e-17  Score=110.94  Aligned_cols=88  Identities=22%  Similarity=0.352  Sum_probs=74.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+...         ....|.|.+++.+|.|.|+|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~---------~~~~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM---------SGAVLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec---------CCCEEEECcCChhhCEEEEEE
Confidence            46677777788889999999999999999999999999987755433221         346799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEe
Q psy16652        353 AANKYGSAQKEIELFDR  369 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~  369 (384)
                      |.|..|+...++.|.|+
T Consensus        72 A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          72 AENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EEcCCCceEEEEEEEEC
Confidence            99999999999998874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.72  E-value=1.5e-16  Score=107.91  Aligned_cols=87  Identities=23%  Similarity=0.363  Sum_probs=71.0

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++.+.....+. ...+.|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~-~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGD-EVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCC-cEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            678999999999999999999999888544 344443322222 235789999999999999999999999999999999


Q ss_pred             EEeeeecCC
Q psy16652        367 FDRETQTGD  375 (384)
Q Consensus       367 ~v~~~~~~~  375 (384)
                      .|..+|.+|
T Consensus        80 ~V~~~P~~P   88 (88)
T cd05735          80 TVQEPPDPP   88 (88)
T ss_pred             EEeCCCCCC
Confidence            999887654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.70  E-value=2.3e-16  Score=109.20  Aligned_cols=89  Identities=25%  Similarity=0.288  Sum_probs=70.8

Q ss_pred             CCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ....+.+|+++.|.|.+.| .|+|.+.|+++|.++.......+...........+.|.|..+..+|+|.|+|.|+|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3456788999999999999 888899999999999755443222111011123578999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                      .+.++.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999999885

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.69  E-value=2.3e-16  Score=103.69  Aligned_cols=74  Identities=30%  Similarity=0.500  Sum_probs=64.4

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      +|+.+.|.|.+.|.|.|.+.|+++|..+....+....        ..++|.|.+++.+|.|.|+|.|.|..|+...++.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            5789999999999999999999999988765544332        35689999999999999999999999999999888


Q ss_pred             EE
Q psy16652        367 FD  368 (384)
Q Consensus       367 ~v  368 (384)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            75

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.69  E-value=2.1e-16  Score=102.73  Aligned_cols=73  Identities=32%  Similarity=0.481  Sum_probs=64.6

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      |+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.        .+++|.|.+++.+|.|.|+|.|+|..|+...+..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW--------DDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc--------CCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            578999999999999999999999988776666543        356899999999999999999999999999999887


Q ss_pred             E
Q psy16652        368 D  368 (384)
Q Consensus       368 v  368 (384)
                      |
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            5

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.68  E-value=6.6e-16  Score=106.19  Aligned_cols=85  Identities=21%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      |....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+....    .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ----GKYASLTIKGVSSEDSGKYGIVVKNKYGG   83 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcC----CCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence            44556789999999999999999999999999999877666554211    12357999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16652        360 AQKEIELFD  368 (384)
Q Consensus       360 ~~~~~~l~v  368 (384)
                      ....+.|.|
T Consensus        84 ~~~~~~v~v   92 (92)
T cd05737          84 ETVDVTVSV   92 (92)
T ss_pred             ceEEEEEeC
Confidence            999988875

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.68  E-value=6.7e-16  Score=106.24  Aligned_cols=89  Identities=17%  Similarity=0.364  Sum_probs=76.1

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+..|+.+.|.|.+.|+|.|.+.|+++|..+..+.++.+...     ...+.|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~   77 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-----EYKSTFEISKVQMSDEGNYTVV   77 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc-----CCeeEEEECCCCcccCEeEEEE
Confidence            56676777788899999999999999999999999999998877666554421     1346899999999999999999


Q ss_pred             EEeCCcceEEEEEE
Q psy16652        353 AANKYGSAQKEIEL  366 (384)
Q Consensus       353 a~n~~g~~~~~~~l  366 (384)
                      |+|..|..+.++.|
T Consensus        78 a~N~~G~~~~~~~l   91 (92)
T cd05747          78 VENSEGKQEAQFTL   91 (92)
T ss_pred             EEcCCCCEeEEEEe
Confidence            99999999988876

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.67  E-value=1e-15  Score=106.36  Aligned_cols=96  Identities=23%  Similarity=0.357  Sum_probs=70.2

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            46666555555555689999999999999999999999877643321100000000111246799999999999999999


Q ss_pred             EEeCCcceEEEEEEEE
Q psy16652        353 AANKYGSAQKEIELFD  368 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v  368 (384)
                      |.|..|...+++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999999998875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.66  E-value=9.7e-16  Score=99.93  Aligned_cols=74  Identities=26%  Similarity=0.441  Sum_probs=60.3

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +.|.|.+.|.|.|.+.|++++..+..+ +++.+....    ....+|.|.+++.+|+|.|+|.|.|..|+...+..|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~----~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDN----SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcC----CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            468999999999999999999998743 444433211    11247999999999999999999999999999988875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.66  E-value=8e-16  Score=97.35  Aligned_cols=66  Identities=32%  Similarity=0.463  Sum_probs=56.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +.|.|.+.|+|.|.+.|++||..+....             ..+.|.|.++..+|+|.|+|.|+|..|..++++.|.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            3689999999999999999999886321             35689999999999999999999999988877777653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.66  E-value=1.1e-15  Score=108.10  Aligned_cols=101  Identities=22%  Similarity=0.386  Sum_probs=75.2

Q ss_pred             EecCeEEecCCCccc----ccCCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecC-CC
Q psy16652        271 EFAPVITINRPRQGQ----ALQYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIE-RR  344 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~  344 (384)
                      .++|.+...+....+    ..|..+.|.|.+.|.|.+.+.|+++|..+... .++....... .....+.|+|.++. .+
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~-~~~~~s~L~I~~v~~~~   80 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHT-GTVHTSILTIINVSAAL   80 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeecc-CccceeEEEECcCCccC
Confidence            456666554442121    24578999999999999999999999988643 3443332222 12234779999987 58


Q ss_pred             CCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        345 QFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       345 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|.|+|.|.|..|....++.|.|..+|
T Consensus        81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          81 DYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            9999999999999999999999998776

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.66  E-value=1.4e-15  Score=98.86  Aligned_cols=71  Identities=28%  Similarity=0.637  Sum_probs=61.2

Q ss_pred             cEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       290 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      .+.|.|.+.|.|.|.+.|+++|..+....++.+.        ....|.|.+++.+|+|.|+|.|.|..|+.++++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~--------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV--------KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE--------ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            3689999999999999999999988766655443        2456889999999999999999999999999998875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.66  E-value=1.4e-15  Score=105.53  Aligned_cols=81  Identities=26%  Similarity=0.544  Sum_probs=68.4

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++...       ...+.|+|.+++.+|.|.|+|.|.|..|..+
T Consensus        13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (95)
T cd05730          13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN-------EDGSEMTILDVDKLDEAEYTCIAENKAGEQE   85 (95)
T ss_pred             eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe-------CCCCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            45788999999999999999999999999988655 333221       1345799999999999999999999999999


Q ss_pred             EEEEEEEee
Q psy16652        362 KEIELFDRE  370 (384)
Q Consensus       362 ~~~~l~v~~  370 (384)
                      .++.|.|..
T Consensus        86 ~~~~L~V~~   94 (95)
T cd05730          86 AEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEe
Confidence            999998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.66  E-value=1.2e-15  Score=99.70  Aligned_cols=76  Identities=17%  Similarity=0.331  Sum_probs=60.1

Q ss_pred             EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .|.|.+.|+|.|+++|++||.++..+.+..............+.|.|.++..+|+|.|+|.|+|..|+..+++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            3789999999999999999999987665433221111112356799999999999999999999999999888764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.66  E-value=2e-15  Score=103.96  Aligned_cols=90  Identities=29%  Similarity=0.540  Sum_probs=79.2

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..+.++.+....     ....|.|.+++.+|+|.|+|.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~   75 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCVA   75 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET-----TEEEEEESSESGGGSEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEEEE
Confidence            45566667788899999999999999999999999999999988877765432     5778999999999999999999


Q ss_pred             EeCCcceEEEEEEEE
Q psy16652        354 ANKYGSAQKEIELFD  368 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v  368 (384)
                      .|..|..+.++.|.|
T Consensus        76 ~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   76 SNSSGEATASVNLTV   90 (90)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEC
Confidence            999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.65  E-value=1.5e-15  Score=102.68  Aligned_cols=81  Identities=25%  Similarity=0.418  Sum_probs=70.6

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .|.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+....++..         ....|.|.+++.+|.|.|+|.|.|..|
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV---------EAGDLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE---------eCCEEEEeeCCHHHCEEEEEEEECCCC
Confidence            45567788999999999999999999999999999876655443         255799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy16652        359 SAQKEIELFD  368 (384)
Q Consensus       359 ~~~~~~~l~v  368 (384)
                      ...+++.|.|
T Consensus        76 ~~~~~~~l~V   85 (85)
T cd05728          76 TIYASAELAV   85 (85)
T ss_pred             eEEEEEEEEC
Confidence            9999988875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.65  E-value=1.9e-15  Score=101.91  Aligned_cols=81  Identities=15%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      +.+..|+.+.|.|.+.|.|.|.+.|++++.++... .++.+...     ...+.|.|.++..+|+|.|+|.|.|..|...
T Consensus         5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   79 (86)
T cd05894           5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVGEDH   79 (86)
T ss_pred             EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence            45678999999999999999999999999998654 34443221     1356899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy16652        362 KEIELFD  368 (384)
Q Consensus       362 ~~~~l~v  368 (384)
                      .++.|.|
T Consensus        80 ~~~~l~V   86 (86)
T cd05894          80 ASLFVKV   86 (86)
T ss_pred             EEEEEEC
Confidence            9988875

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.64  E-value=2.2e-15  Score=104.61  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=70.3

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeee-ccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA-TSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ...+..|+.+.|.|.+.|+|+|.+.|+++|.++..+.+....... .......++|.|..++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            456778899999999999999999999999999766543221110 0011235789999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy16652        361 QKEIELFDR  369 (384)
Q Consensus       361 ~~~~~l~v~  369 (384)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999999875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.64  E-value=3.5e-15  Score=101.85  Aligned_cols=86  Identities=22%  Similarity=0.352  Sum_probs=71.5

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      +.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......         .....|.|.+++.+|+|.|.|.|
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a   72 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---------MSGAVLKIPNIQFEDEGTYECEA   72 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---------EeCCEEEECCCCcccCEEEEEEE
Confidence            445555666778899999999999999999999999887665443221         14678999999999999999999


Q ss_pred             EeCCcceEEEEEEEE
Q psy16652        354 ANKYGSAQKEIELFD  368 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v  368 (384)
                      .|..|....+..|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd04968          73 ENIKGKDTHQGRIYV   87 (88)
T ss_pred             EECCCcEEEEEEEEE
Confidence            999999999988887

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.64  E-value=2.6e-15  Score=98.39  Aligned_cols=73  Identities=30%  Similarity=0.522  Sum_probs=64.4

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+..+.        ....|.|.+++.+|+|.|+|.|.|..|+...++.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW--------PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC--------CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            678999999999999999999999998776665543        246799999999999999999999999999999887


Q ss_pred             E
Q psy16652        368 D  368 (384)
Q Consensus       368 v  368 (384)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            5

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.63  E-value=5.6e-15  Score=101.47  Aligned_cols=88  Identities=18%  Similarity=0.331  Sum_probs=68.4

Q ss_pred             EecCCCcccccCCcEEEEEEEeccCC-CeEEEEE-CCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        277 TINRPRQGQALQYDAILECHVEAYPP-PAIVWIK-DGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       277 ~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      .+.|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+... .++....  .  ....++|.|..++.+|+|.|+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~--~--~~~~~~L~I~~v~~~D~G~YtC~A   79 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR--N--DDYSSTLTIYNANIDDAGIYKCVV   79 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe--C--CCCceEEEEeccChhhCEEEEEEE
Confidence            34556667889999999999999995 6999998 77766543 3333221  1  112468999999999999999999


Q ss_pred             EeCC-cceEEEEEEEE
Q psy16652        354 ANKY-GSAQKEIELFD  368 (384)
Q Consensus       354 ~n~~-g~~~~~~~l~v  368 (384)
                      +|.. |..++++.|.|
T Consensus        80 ~N~~~g~~~~s~~l~v   95 (96)
T cd05865          80 SNEDEGESEATVNVKI   95 (96)
T ss_pred             EcCCCCcEEEEEEEEE
Confidence            9996 99999998876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.63  E-value=5.8e-15  Score=97.53  Aligned_cols=74  Identities=24%  Similarity=0.429  Sum_probs=62.2

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      |+.+.|.|.+.|.|.|++.|+++|..+...... ...       ...+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-------VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-------eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            678999999999999999999999988654321 111       135679999999999999999999999999999888


Q ss_pred             EE
Q psy16652        367 FD  368 (384)
Q Consensus       367 ~v  368 (384)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            87

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.62  E-value=4.8e-15  Score=103.23  Aligned_cols=95  Identities=22%  Similarity=0.332  Sum_probs=70.3

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+. ...+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...................+.|+|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            45554 34456788999999999999999999999999866654321110000001112346899999999999999999


Q ss_pred             EEeCCcceEEEEEEEE
Q psy16652        353 AANKYGSAQKEIELFD  368 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v  368 (384)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999999888864

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.62  E-value=5.6e-15  Score=97.22  Aligned_cols=73  Identities=26%  Similarity=0.385  Sum_probs=62.7

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +.|.|.+.|.|.|.+.|+++|..+..+.++.+...     ...+.|.|.++..+|+|.|+|.|.|..|+.+.++.|.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT-----ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC-----CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            67999999999999999999999876666554321     13578999999999999999999999999999998875

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.62  E-value=6.7e-15  Score=99.03  Aligned_cols=80  Identities=23%  Similarity=0.354  Sum_probs=63.8

Q ss_pred             CcEEEEEEEeccCCC--eEEEEECCEEecCCC---ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        289 YDAILECHVEAYPPP--AIVWIKDGVQIMNNQ---HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       289 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      +.+.|.|.+.|.|.|  .+.|+++|..+....   ++....    .....++|+|.+++.+|+|.|+|.|.|..|+..++
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME----VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE----ecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            467899999999987  689999999885432   221111    00134689999999999999999999999999999


Q ss_pred             EEEEEeeee
Q psy16652        364 IELFDRETQ  372 (384)
Q Consensus       364 ~~l~v~~~~  372 (384)
                      +.|.|.++|
T Consensus        77 ~~L~V~~~P   85 (85)
T cd05854          77 ATLVVRGPP   85 (85)
T ss_pred             EEEEEECCC
Confidence            999998864

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.62  E-value=9.3e-15  Score=100.09  Aligned_cols=83  Identities=18%  Similarity=0.301  Sum_probs=67.8

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.........     .......|.|.++..+|.|.|+|.|.|..|+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPVGQA   82 (90)
T ss_pred             cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence            3445789999999999999999999999999988654432111     11235689999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy16652        361 QKEIELFD  368 (384)
Q Consensus       361 ~~~~~l~v  368 (384)
                      ..++.|.|
T Consensus        83 ~~~~~L~v   90 (90)
T cd04972          83 NVSVQVTV   90 (90)
T ss_pred             eEEEEEeC
Confidence            99988864

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.62  E-value=6.7e-15  Score=96.93  Aligned_cols=75  Identities=23%  Similarity=0.422  Sum_probs=61.6

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      |+.+.|.|.+.|.|.|++.|+++|.++..........      .....|.|..++.+|.|.|+|.|+|..|...+++.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK------VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE------ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            5788999999999999999999999885432211110      1345788999999999999999999999999999998


Q ss_pred             E
Q psy16652        368 D  368 (384)
Q Consensus       368 v  368 (384)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            7

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.61  E-value=9.9e-15  Score=100.03  Aligned_cols=86  Identities=23%  Similarity=0.357  Sum_probs=71.0

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .|....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++...... .   ...+|.|..++.+|+|.|+|.|.|..|
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-G---KYASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-C---CEEEEEECCCChhhCEEEEEEEEeCCC
Confidence            345567889999999999999999999999999988766655443211 1   124799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy16652        359 SAQKEIELFD  368 (384)
Q Consensus       359 ~~~~~~~l~v  368 (384)
                      ....++.|.|
T Consensus        83 ~~~~~~~v~~   92 (92)
T cd05891          83 GETVDVTVSV   92 (92)
T ss_pred             ceeeEEEEEC
Confidence            9999998875

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.61  E-value=1.6e-14  Score=99.98  Aligned_cols=95  Identities=23%  Similarity=0.333  Sum_probs=75.6

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.|...+....+..|+.+.|.|.+.+.|.+.+.|+|++..+              ..+.++.+..  ....+.|.|.++.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l--------------~~~~~~~~~~--~~~~s~L~I~~~~   64 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQI--------------QEGEGIKIEN--TENSSKLTITEGQ   64 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEe--------------cCCCcEEEEe--cCCeeEEEECCCC
Confidence            45677788889999999999999999999999999987642              2234455544  3345689999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPI  184 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  184 (384)
                      .+|+|.|+|.+.|.. +.....+.|.|.+.|.
T Consensus        65 ~~D~G~Ytc~a~N~~-G~~~~~~~l~V~~~P~   95 (98)
T cd05762          65 QEHCGCYTLEVENKL-GSRQAQVNLTVVDKPD   95 (98)
T ss_pred             hhhCEEEEEEEEcCC-CceeEEEEEEEecCCC
Confidence            999999999998554 5577788999987764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.61  E-value=9.8e-15  Score=101.67  Aligned_cols=90  Identities=26%  Similarity=0.423  Sum_probs=68.3

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEecCC-----CceeeeeeeccCccccceEEEeecCCCC
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIMNN-----QHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      +|.+.. +.+..+.+|+.++|.|.+.|.|.|.+.|+++  +..+...     .++.+..     ......|.|.+++.+|
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-----~~~~~~L~I~~v~~~D   75 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-----QHGESSLHIKDVKLSD   75 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee-----cCCeeEEEEeeCCcCC
Confidence            455533 4567788999999999999999999999994  4444321     2332211     1134679999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEE
Q psy16652        346 FGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +|.|+|.|.|..|...+++.|.|
T Consensus        76 ~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          76 SGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CEEEEEEEeccCCcceeEEEEeC
Confidence            99999999999999999888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.60  E-value=7.3e-15  Score=96.00  Aligned_cols=74  Identities=24%  Similarity=0.375  Sum_probs=59.5

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+..  ..  .....|.|.+++.+|+|.|+|.|.|..|+.+.+..|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~--~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ--DN--CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE--cC--CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            468999999999999999999988643 3433322  10  11236999999999999999999999999999988875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.60  E-value=4.9e-15  Score=95.77  Aligned_cols=68  Identities=29%  Similarity=0.589  Sum_probs=59.3

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      +.|.|.+.|.|.|.+.|+++|..+....++.+.        ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS--------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC--------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            468999999999999999999988766655443        25689999999999999999999999999988876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.60  E-value=6.4e-15  Score=94.52  Aligned_cols=67  Identities=19%  Similarity=0.431  Sum_probs=56.3

Q ss_pred             EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      .|.|.+.|.|.|.+.|++||.++....+..          ....|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEEc----------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            589999999999999999999997543221          2457999999999999999999999998877666554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.60  E-value=1.1e-14  Score=95.57  Aligned_cols=74  Identities=27%  Similarity=0.433  Sum_probs=59.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+..  ..  ....+|.|..++.+|+|.|+|.|.|..|+...+..|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~--~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ--DN--CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE--cC--CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            468999999999999999999988743 3433321  11  12346999999999999999999999999999988865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.60  E-value=6.2e-15  Score=95.84  Aligned_cols=71  Identities=24%  Similarity=0.428  Sum_probs=59.0

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +.|.|.+.|.|.|.+.|++++..+..... ...       .....|.|.+++.+|.|.|+|.|.|..|..+.++.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL-------NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE-------cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            46899999999999999999987754322 111       146789999999999999999999999999999998873

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.60  E-value=9.1e-15  Score=94.82  Aligned_cols=70  Identities=29%  Similarity=0.465  Sum_probs=59.3

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +.|.|.+.|.|.|.+.|+++|.++....+...         ....|.|.+++.+|+|.|+|.|.|..|..+.++.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK---------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc---------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            36899999999999999999999976643221         35789999999999999999999999998888777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.60  E-value=1.6e-14  Score=95.90  Aligned_cols=76  Identities=18%  Similarity=0.309  Sum_probs=60.1

Q ss_pred             EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .|.|.+.|.|.|.++|+++|.++..+.+........  ......+.|.|.+++.+|+|.|+|.|+|..|..++++.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            478999999999999999999998766433322111  1122356799999999999999999999999999988764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=1.2e-14  Score=96.50  Aligned_cols=80  Identities=19%  Similarity=0.316  Sum_probs=63.6

Q ss_pred             CcEEEEEEEec--cCCCeEEEEECCEEecCC---CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        289 YDAILECHVEA--YPPPAIVWIKDGVQIMNN---QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       289 ~~~~l~C~~~~--~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      +++.|.|.+.+  .+++.|.|++||+++...   .++...    ......+.|.|.+++.+|+|.|+|.|.|..++..++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~----~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV----GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe----ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence            46789999977  447799999999999632   222221    011235689999999999999999999999999999


Q ss_pred             EEEEEeeee
Q psy16652        364 IELFDRETQ  372 (384)
Q Consensus       364 ~~l~v~~~~  372 (384)
                      ..|.|.+||
T Consensus        77 a~L~V~~pP   85 (85)
T cd05853          77 ADLIVRGPP   85 (85)
T ss_pred             EEEEEecCC
Confidence            999999876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.59  E-value=1.9e-14  Score=97.73  Aligned_cols=82  Identities=20%  Similarity=0.369  Sum_probs=66.6

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++|..+....+.......    .....|.|..++.+|+|.|+|.|.|..|+...
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            34678999999999999999999999999998765443211110    13457899999999999999999999999999


Q ss_pred             EEEEEE
Q psy16652        363 EIELFD  368 (384)
Q Consensus       363 ~~~l~v  368 (384)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            998875

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.59  E-value=2.4e-14  Score=97.18  Aligned_cols=80  Identities=38%  Similarity=0.557  Sum_probs=66.6

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   86 (88)
T cd05851           8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQARVY   86 (88)
T ss_pred             cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce-EEEEEEE
Confidence            445678899999999999999999999999987765543344456689999999999999999999999986 5666665


Q ss_pred             E
Q psy16652        270 V  270 (384)
Q Consensus       270 v  270 (384)
                      |
T Consensus        87 V   87 (88)
T cd05851          87 V   87 (88)
T ss_pred             E
Confidence            5

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.58  E-value=2e-14  Score=95.28  Aligned_cols=75  Identities=21%  Similarity=0.344  Sum_probs=62.9

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.........      ......|.|.+++.+|.|.|+|.|.|..|...+.+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR------RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE------EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            678999999999999999999999988655432110      11357899999999999999999999999999999888


Q ss_pred             E
Q psy16652        368 D  368 (384)
Q Consensus       368 v  368 (384)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            7

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.58  E-value=3.7e-14  Score=96.39  Aligned_cols=86  Identities=19%  Similarity=0.340  Sum_probs=67.3

Q ss_pred             EecCCCcccccCCcEEEEEEEeccCCCeEEEEE-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652        277 TINRPRQGQALQYDAILECHVEAYPPPAIVWIK-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       277 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                      .+.+.+..+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++.+..  .   .....|+|..+..+|+|.|+|.|+|
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~--~---g~~~~L~I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK--E---GVRSRLTIYNANIEDAGIYRCQATD   77 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEe--C---CCeeEEEEecCChHHCEEEEEEEEc
Confidence            34456677889999999999999998 999998 577776655554432  0   1235899999999999999999999


Q ss_pred             CCcce-EEEEEEEE
Q psy16652        356 KYGSA-QKEIELFD  368 (384)
Q Consensus       356 ~~g~~-~~~~~l~v  368 (384)
                      ..|.. ++++.|.+
T Consensus        78 ~~G~~~~~~i~l~~   91 (92)
T cd05866          78 AKGQTQEATVVLEI   91 (92)
T ss_pred             CCCcEEEEEEEEEE
Confidence            99986 66677765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.58  E-value=2e-14  Score=97.31  Aligned_cols=82  Identities=21%  Similarity=0.340  Sum_probs=63.8

Q ss_pred             CcEEEEEEEeccCCC--eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        289 YDAILECHVEAYPPP--AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       289 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      +.+.|.|.+.|.|.|  .+.|+++|..+..... .......  .....+.|.|.+++.+|+|.|+|.|.|..|...++..
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG--GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe--cccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence            468899999999987  6799999998854321 1110000  0113578999999999999999999999999999999


Q ss_pred             EEEeeee
Q psy16652        366 LFDRETQ  372 (384)
Q Consensus       366 l~v~~~~  372 (384)
                      |.|.++|
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            9999865

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.57  E-value=6.8e-14  Score=104.35  Aligned_cols=122  Identities=17%  Similarity=0.291  Sum_probs=87.1

Q ss_pred             EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEE
Q psy16652        236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQ  313 (384)
Q Consensus       236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~  313 (384)
                      .|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..+|.+.+.+.......|+.+.|.|.+.|. |. +.|.|+++|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            58999999999999999999876664 77889999999998876665555578899999999985 54 38999999864


Q ss_pred             ecC----CCcee---eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        314 IMN----NQHYS---VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       314 ~~~----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ...    .....   .....++.....+.|.+......+.+.|+|.+.+..-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            221    11111   1112222222345666665555667799999988653

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.57  E-value=4.9e-14  Score=90.59  Aligned_cols=68  Identities=21%  Similarity=0.423  Sum_probs=55.8

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      |+.+.|.|.+.|.|.|.|.|++++..+....+...         ....|.|.+++  |+|.|+|.|.|..|..+.+..|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            57899999999999999999999988865443221         24568888864  7899999999999998888776

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.57  E-value=3.8e-14  Score=97.06  Aligned_cols=78  Identities=27%  Similarity=0.507  Sum_probs=63.8

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.        ...++...        ....|+|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--------QTGDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--------CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            6789999999999999999999886431        12222221        2457999999999999999999999999


Q ss_pred             eEEEEEEEEeeeec
Q psy16652        360 AQKEIELFDRETQT  373 (384)
Q Consensus       360 ~~~~~~l~v~~~~~  373 (384)
                      ...++.|.|.+...
T Consensus        73 ~~~~~~l~V~~~~~   86 (90)
T cd05726          73 ILTKAYLEVTDVIA   86 (90)
T ss_pred             eEEEEEEEEeeccc
Confidence            99999999998753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.56  E-value=3.5e-14  Score=94.24  Aligned_cols=76  Identities=18%  Similarity=0.277  Sum_probs=62.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++....     ......|.|.+++.+|.|.|+|.|.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS-----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE-----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            6789999999999999999999998887665554332     11346799999999999999999999999987776655


Q ss_pred             E
Q psy16652        368 D  368 (384)
Q Consensus       368 v  368 (384)
                      +
T Consensus        76 ~   76 (78)
T cd05743          76 L   76 (78)
T ss_pred             E
Confidence            4

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.56  E-value=6.3e-14  Score=96.38  Aligned_cols=82  Identities=26%  Similarity=0.449  Sum_probs=61.1

Q ss_pred             CeEEecCCCcccc---cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEE
Q psy16652        274 PVITINRPRQGQA---LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQY  349 (384)
Q Consensus       274 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y  349 (384)
                      |.+...+....+.   .|+.+.|.|.+.|.|.|.+.|+++|..+..........       .++.|.|.++. .+|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-------~~g~L~i~~~~~~~D~G~Y   74 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-------IDGNLIISNPSEVKDSGRY   74 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-------eCCeEEEccCCccCcCEEE
Confidence            4444444443332   46899999999999999999999999886443322221       34678888875 6899999


Q ss_pred             EEEEEeCCcceEE
Q psy16652        350 ACKAANKYGSAQK  362 (384)
Q Consensus       350 ~C~a~n~~g~~~~  362 (384)
                      +|.|.|..|+..+
T Consensus        75 ~C~A~N~~G~~~S   87 (94)
T cd05848          75 QCLATNSIGSILS   87 (94)
T ss_pred             EEEEEcCCCeEEe
Confidence            9999999998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=2.5e-14  Score=95.05  Aligned_cols=78  Identities=22%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ....+.+|+.+.|.|.+.+. .+.+.|+++|.++..+.++.+.         ...|.|.+++.+|+|.|+|.|.|..|+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence            34557889999999999985 5689999999999766655432         3579999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy16652        361 QKEIELFD  368 (384)
Q Consensus       361 ~~~~~l~v  368 (384)
                      ..++.|.|
T Consensus        72 ~~~~~v~V   79 (79)
T cd04973          72 TTYFSVNV   79 (79)
T ss_pred             cEEEEEeC
Confidence            88887764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.56  E-value=1e-13  Score=95.44  Aligned_cols=82  Identities=22%  Similarity=0.347  Sum_probs=60.6

Q ss_pred             CeEEecCCCccccc---CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEE
Q psy16652        274 PVITINRPRQGQAL---QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQY  349 (384)
Q Consensus       274 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y  349 (384)
                      |.+...|....+.+   |+.++|.|.+.|.|.|.+.|+++|..+..........       ..+.|.|.++. .+|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-------~~g~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-------VAGNLVINNPQKARDAGSY   74 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-------ECCeEEEccCCccCcCEEE
Confidence            44444455544444   4689999999999999999999999986443222211       24678888765 6899999


Q ss_pred             EEEEEeCCcceEE
Q psy16652        350 ACKAANKYGSAQK  362 (384)
Q Consensus       350 ~C~a~n~~g~~~~  362 (384)
                      +|.|+|..|+..+
T Consensus        75 ~C~A~N~~G~~~s   87 (94)
T cd05850          75 QCLAINRCGTVVS   87 (94)
T ss_pred             EEEEEcCcCcEEE
Confidence            9999999998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.55  E-value=5.2e-14  Score=93.03  Aligned_cols=72  Identities=31%  Similarity=0.590  Sum_probs=56.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE--EEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK--EIELF  367 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~  367 (384)
                      ++|.|.+.|.|.|.+.|+++|.++.... ++.+..       ....|.|.+++.+|+|.|.|.|.|..|....  .++|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS-------KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC-------CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            4799999999999999999999886543 222211       2458999999999999999999999998754  55555


Q ss_pred             Ee
Q psy16652        368 DR  369 (384)
Q Consensus       368 v~  369 (384)
                      |.
T Consensus        74 v~   75 (77)
T cd05760          74 II   75 (77)
T ss_pred             Ee
Confidence            53

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.55  E-value=9.8e-14  Score=94.56  Aligned_cols=79  Identities=20%  Similarity=0.365  Sum_probs=64.2

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      .++.+.+|+.++|.|.+.|. .|.+.|++++..+... +..+..       ...+|.|.+++.+|+|.|.|.|.|..|..
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSN-------DNRTLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeC-------CCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence            35678899999999999999 9999999999887643 332221       34689999999999999999999999986


Q ss_pred             EE-EEEEEE
Q psy16652        361 QK-EIELFD  368 (384)
Q Consensus       361 ~~-~~~l~v  368 (384)
                      .+ .+.|.|
T Consensus        82 ~S~~~~L~V   90 (91)
T cd05740          82 TSDPYILNV   90 (91)
T ss_pred             EeeeEEEEe
Confidence            54 566765

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=7.1e-14  Score=92.00  Aligned_cols=73  Identities=32%  Similarity=0.537  Sum_probs=60.3

Q ss_pred             CCcEEEEEEEeccCCCeEEEEE-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIK-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+....        ....|.|..++.+|.|.|+|.|.|..|..+.++.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY--------DNGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe--------cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999999999999997 56666544433221        35679999999999999999999999999998888


Q ss_pred             EE
Q psy16652        367 FD  368 (384)
Q Consensus       367 ~v  368 (384)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            75

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.55  E-value=3.2e-14  Score=92.97  Aligned_cols=71  Identities=30%  Similarity=0.563  Sum_probs=58.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +.|.|.+.|.|.|.+.|++++..+.... ....       .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   71 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-eeEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence            4689999999999999999998775332 1111       135689999999999999999999999999999998873

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.55  E-value=9e-14  Score=97.86  Aligned_cols=92  Identities=26%  Similarity=0.395  Sum_probs=65.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC----ceeeeeeeccCccccceEEEe--ecCCCCC
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ----HYSVSHFATSDEFSDTSLRVI--TIERRQF  346 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~--~~~~~d~  346 (384)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....    ...... ..+   ....+.+.  .++.+|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~D~   76 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL-PSG---SLFFLRVVHGRKGRSDE   76 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEe-cCC---cEEEEEeeccCCCcCcC
Confidence            4667777777888999999999999999999999999999886521    111110 000   11122222  2368899


Q ss_pred             eEEEEEEEeCCcc-eEEEEEEEE
Q psy16652        347 GQYACKAANKYGS-AQKEIELFD  368 (384)
Q Consensus       347 G~Y~C~a~n~~g~-~~~~~~l~v  368 (384)
                      |.|+|.|.|..|. .+..+.|.|
T Consensus        77 G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          77 GVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEEEccccceecceEEEEe
Confidence            9999999999999 666677765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.54  E-value=3.6e-14  Score=95.77  Aligned_cols=78  Identities=18%  Similarity=0.374  Sum_probs=64.0

Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      ....|+.+.|.|.+.|.|.|.+.|++++..+.........       .....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   77 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR-------KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT   77 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec-------CceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence            4567999999999999999999999999877544322111       134679999999999999999999999999888


Q ss_pred             EEEEE
Q psy16652        364 IELFD  368 (384)
Q Consensus       364 ~~l~v  368 (384)
                      +.|.|
T Consensus        78 ~~v~v   82 (82)
T cd05856          78 YKVDV   82 (82)
T ss_pred             EEEeC
Confidence            88764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.54  E-value=4.2e-14  Score=91.54  Aligned_cols=69  Identities=23%  Similarity=0.487  Sum_probs=57.7

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +.|.|.+.|.|.|.+.|++++..+... ++...        ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            468999999999999999998766432 33322        3567999999999999999999999999999888865

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.54  E-value=5.8e-14  Score=92.06  Aligned_cols=71  Identities=27%  Similarity=0.493  Sum_probs=57.1

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecC--CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIELF  367 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  367 (384)
                      ++|.|.+.|.|.|.+.|++++..+..  ..++...        ..+.|.|.+++.+|+|.|+|.|.|..|.. .....|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--------RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--------CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            36899999999999999999988863  3343322        34579999999999999999999999985 5666776


Q ss_pred             Ee
Q psy16652        368 DR  369 (384)
Q Consensus       368 v~  369 (384)
                      |+
T Consensus        73 v~   74 (74)
T cd05738          73 VR   74 (74)
T ss_pred             EC
Confidence            63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.54  E-value=6.3e-14  Score=92.39  Aligned_cols=71  Identities=30%  Similarity=0.479  Sum_probs=56.5

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCC---CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNN---QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      +.|.|.+.|.|.|.+.|+++|......   .++...       .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM-------PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe-------cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            368999999999999999998643211   222211       1345799999999999999999999999999999888


Q ss_pred             E
Q psy16652        368 D  368 (384)
Q Consensus       368 v  368 (384)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            7

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.52  E-value=1.9e-13  Score=95.12  Aligned_cols=92  Identities=26%  Similarity=0.433  Sum_probs=70.6

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCC-CeE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQ-FGQ  348 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~  348 (384)
                      +|.+. .+....+..|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+...... ....++|.|.++..+| .|.
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence            45554 3445667899999999999999999 69999999988654  35544432211 1224679999999855 899


Q ss_pred             EEEEEEeCCcceEEEEEE
Q psy16652        349 YACKAANKYGSAQKEIEL  366 (384)
Q Consensus       349 Y~C~a~n~~g~~~~~~~l  366 (384)
                      |.|.|.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999999988876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.52  E-value=1.4e-13  Score=91.08  Aligned_cols=73  Identities=26%  Similarity=0.551  Sum_probs=60.9

Q ss_pred             EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      .|.|.+.|.|.|.+.|++++..+....+..+...     .....|.|..++.+|.|.|+|.|.|..|..+.++.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~-----~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI-----ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEe-----CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            6899999999999999999998865543333221     124579999999999999999999999999999999886

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.52  E-value=2.7e-13  Score=93.14  Aligned_cols=91  Identities=19%  Similarity=0.327  Sum_probs=67.6

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +.+.|....+.+|++++|.|.+.+.| ++.+.|++. +....             ..+.++.+... ....++|.|.+++
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~-------------~~~~r~~v~~~-~~~~~~L~I~~v~   68 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT-------------PNQQRISVVRN-DDYSSTLTIYNAN   68 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc-------------ccCCeEEEEeC-CCCceEEEEeccC
Confidence            34556677789999999999999988 479999984 43210             11234444332 2335689999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .+|+|.|+|.|.|..++..+.++.|.|
T Consensus        69 ~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          69 IDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             hhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            999999999999877788888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.52  E-value=1.5e-13  Score=94.03  Aligned_cols=81  Identities=21%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             CCcEEEEEEEeccCCCeEEEEEC----CEEecCCCceeeeeeecc----CccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKD----GVQIMNNQHYSVSHFATS----DEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      |+.+.|.|.+.|.|.|.+.|+++    |..+..............    .....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            57899999999999999999984    444433322211111100    0112367999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16652        360 AQKEIELFD  368 (384)
Q Consensus       360 ~~~~~~l~v  368 (384)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999988887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.52  E-value=1.6e-13  Score=95.04  Aligned_cols=81  Identities=22%  Similarity=0.340  Sum_probs=66.3

Q ss_pred             CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCcee-E--------eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSI-Y--------RGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .....+.+|+++.|.|.+.| .|+|.+.|+|++..+....... .        ....|.|.++..+|+|.|+|.|.|..|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            35567899999999999999 8889999999998876443322 1        136799999999999999999999999


Q ss_pred             CceeeEEEEEEE
Q psy16652        260 RGMKRNIAVEVE  271 (384)
Q Consensus       260 ~~~~~~~~l~v~  271 (384)
                      .. +.++.|.|.
T Consensus        90 ~~-~~t~~L~V~  100 (101)
T cd04975          90 SK-SLTFELYVN  100 (101)
T ss_pred             cE-EEEEEEEEE
Confidence            75 677777764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.52  E-value=1.5e-13  Score=93.85  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECC----EEecCCCcee--eeee--eccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDG----VQIMNNQHYS--VSHF--ATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~----~~~~~~~~~~--~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      |+.+.|.|.+.|.|.|.|.|++++    ..+.......  ....  ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999964    3332221111  1111  0111112357999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999998873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.51  E-value=2.6e-13  Score=92.22  Aligned_cols=89  Identities=20%  Similarity=0.316  Sum_probs=67.4

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +.+.+.+..+.+|+++.|.|.+.+.|. .+.|++++...             .....++.+..  ......|.|.+++.+
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~-------------~~~~~r~~~~~--~g~~~~L~I~~v~~~   66 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK-------------IVSSQRVVVQK--EGVRSRLTIYNANIE   66 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeE-------------ecCCCCEEEEe--CCCeeEEEEecCChH
Confidence            455677788999999999999999887 89999854321             12234555543  344568999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      |+|.|+|.+.|..+......+.|.+
T Consensus        67 D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          67 DAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             HCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            9999999999877665677777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.51  E-value=2.6e-13  Score=92.96  Aligned_cols=87  Identities=20%  Similarity=0.376  Sum_probs=64.8

Q ss_pred             EecCCCcccccCCcEEEEEEEeccCCCeEEEEE-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652        277 TINRPRQGQALQYDAILECHVEAYPPPAIVWIK-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       277 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                      .+.|....+..|+.+.|.|.+.|.|+ .+.|++ ++..+....+.....    .....++|+|.+++.+|+|.|+|.|.|
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEEc
Confidence            34455667889999999999999874 999997 566665544433321    112356899999999999999999999


Q ss_pred             CCc-ceEEEEEEEE
Q psy16652        356 KYG-SAQKEIELFD  368 (384)
Q Consensus       356 ~~g-~~~~~~~l~v  368 (384)
                      ..| ..++++.|.|
T Consensus        79 ~~g~~~~~sv~l~~   92 (92)
T cd04977          79 AKGTESEATVNLKI   92 (92)
T ss_pred             CCCCcceeEEEEEC
Confidence            964 5677777654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.51  E-value=2.9e-13  Score=92.65  Aligned_cols=80  Identities=23%  Similarity=0.402  Sum_probs=59.3

Q ss_pred             CeEEecCCCccccc---CCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecC-CCCCeE
Q psy16652        274 PVITINRPRQGQAL---QYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIE-RRQFGQ  348 (384)
Q Consensus       274 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~  348 (384)
                      |.+...|....+.+   +..+.|.|.+.|.|.|.++|++++..+... .++.+         .++.|.|..+. .+|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~---------~~g~L~I~~~~~~~D~G~   72 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM---------VGGNLVINNPDKYKDAGR   72 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE---------ECCEEEECcCCcCCCCEE
Confidence            44444444433333   457999999999999999999999887532 33221         35689998875 689999


Q ss_pred             EEEEEEeCCcceEE
Q psy16652        349 YACKAANKYGSAQK  362 (384)
Q Consensus       349 Y~C~a~n~~g~~~~  362 (384)
                      |.|.|+|..|...+
T Consensus        73 Y~C~A~N~~G~~~s   86 (93)
T cd05849          73 YVCIVSNIYGKVRS   86 (93)
T ss_pred             EEEEEEeCcceEEE
Confidence            99999999998755

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.51  E-value=2.5e-13  Score=93.46  Aligned_cols=90  Identities=24%  Similarity=0.447  Sum_probs=72.9

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..              +..+.++.+..  ....+.|.|.+++
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~--------------l~~~~~~~~~~--~~~~~~L~I~~v~   64 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRP--------------LTSSQRYQIES--DGGSSSLTIKNVT   64 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEE--------------EESSSSEEEEE--ETTEEEEEESSES
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccc--------------eeeeeeeeeec--ccceeEEccCCCC
Confidence            5677788889999999999999999988889999998654              23356666666  3378899999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .+|+|.|+|.+.+. .+..+..+.|.|
T Consensus        65 ~~D~G~Y~C~~~n~-~g~~~~~~~l~V   90 (90)
T PF07679_consen   65 REDAGTYTCVASNS-SGEATASVNLTV   90 (90)
T ss_dssp             GGGSEEEEEEEEET-TEEEEEEEEEEE
T ss_pred             hhhCEEEEEEEEEC-CCEEEEEEEEEC
Confidence            99999999999866 555666666654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.51  E-value=3.6e-13  Score=91.88  Aligned_cols=80  Identities=36%  Similarity=0.604  Sum_probs=66.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. .....|.
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   86 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD-THQGRIY   86 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE-EEEEEEE
Confidence            455678899999999999999999999999887665544444466799999999999999999999999885 5556665


Q ss_pred             E
Q psy16652        270 V  270 (384)
Q Consensus       270 v  270 (384)
                      |
T Consensus        87 V   87 (88)
T cd04968          87 V   87 (88)
T ss_pred             E
Confidence            4

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.51  E-value=1.6e-13  Score=89.23  Aligned_cols=71  Identities=28%  Similarity=0.524  Sum_probs=58.6

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccCceeE-eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      |+.+.|.|.+.|.|.|.+.|++++..+........ .+++|.|.+++.+|+|.|+|.|.|..|.. +.+..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence            68899999999999999999999876655444333 45789999999999999999999999886 5555554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.50  E-value=3e-13  Score=92.09  Aligned_cols=80  Identities=25%  Similarity=0.440  Sum_probs=63.6

Q ss_pred             CCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        280 RPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      |....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+... .++...        ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~   74 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV--------DDGNLLIAEARKSDEGTYKCVATNMV   74 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc--------cCCEEEEeECCcccCEEEEEEEEecc
Confidence            445667889999999998 78999999999999988653 232221        24689999999999999999999999


Q ss_pred             cceEE-EEEEE
Q psy16652        358 GSAQK-EIELF  367 (384)
Q Consensus       358 g~~~~-~~~l~  367 (384)
                      |...+ .+.|.
T Consensus        75 G~~~s~~~~l~   85 (86)
T cd05724          75 GERESAAARLS   85 (86)
T ss_pred             CceeeeeEEEE
Confidence            98643 45544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.50  E-value=3.5e-13  Score=92.61  Aligned_cols=79  Identities=27%  Similarity=0.423  Sum_probs=64.1

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--e---ccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--R---GNILKIPNITKTDRGTYYCVAQNGVGRGMKR  264 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  264 (384)
                      +....+.+|+++.|.|.+.|.|.|.+.|++++..+........  .   ...|.|.++..+|+|.|+|.+.|..|.. +.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eE
Confidence            5567889999999999999999999999999887765443222  1   2379999999999999999999998876 55


Q ss_pred             EEEEE
Q psy16652        265 NIAVE  269 (384)
Q Consensus       265 ~~~l~  269 (384)
                      .+.|.
T Consensus        87 ~~~v~   91 (92)
T cd05737          87 DVTVS   91 (92)
T ss_pred             EEEEe
Confidence            55554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.50  E-value=1.6e-13  Score=90.14  Aligned_cols=72  Identities=32%  Similarity=0.594  Sum_probs=59.5

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +|+.+.|.|.+.|.|.|.+.|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence            5899999999999999999999998876544332 3346689999999999999999999999886 5555554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.49  E-value=6e-13  Score=89.77  Aligned_cols=78  Identities=27%  Similarity=0.441  Sum_probs=63.5

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-eeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ...    ....|.|.++..+|+|.|+|.|.|..|.. +.+
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~   81 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HAS   81 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEE
Confidence            356788999999999999999999999999987764322 222    13579999999999999999999999985 555


Q ss_pred             EEEE
Q psy16652        266 IAVE  269 (384)
Q Consensus       266 ~~l~  269 (384)
                      +.|.
T Consensus        82 ~~l~   85 (86)
T cd05894          82 LFVK   85 (86)
T ss_pred             EEEE
Confidence            6554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.49  E-value=1e-12  Score=97.96  Aligned_cols=113  Identities=19%  Similarity=0.358  Sum_probs=81.3

Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCC
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNS  222 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~  222 (384)
                      +|.|.+++.+|+|.|+|.+.+. .+.....+.|.|..+|.+.... ......+|+.+.|.|.+.+. |. .++.|++++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~-~~~~~~~~~l~v~~~P~v~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTP-PHQAQQIIQLSVSEPPRVRLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEcc-CcceeeEEEEEEecCCceEEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            5999999999999999999754 3457788899999888775432 33334478899999999884 54 4899999875


Q ss_pred             cccc----------------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        223 AALS----------------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       223 ~~~~----------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ....                .++.....+.|.+.....++...|+|.+.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            4211                111222335677776666677799999988543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG3515|consensus

Probab=99.49  E-value=1.5e-13  Score=124.11  Aligned_cols=348  Identities=16%  Similarity=0.117  Sum_probs=194.8

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      |...|+|+++..+.-   -....--+..|.....-.+..+.|.|+..+........-...      ....+|.-......
T Consensus        36 p~~~~eW~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l------~v~~~pa~~~~~~e  106 (741)
T KOG3515|consen   36 PEIDVEWYHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL------DVDYPPACLPELGE  106 (741)
T ss_pred             CCcceEEEecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccCceecceee------ccccCccccccccc
Confidence            567899999965544   222333456677777777888899999877633322211111      11122222222333


Q ss_pred             eeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         82 QIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      .....+..+.+.|....  .+...+.|..+.....      ...+.....+.......  ......|.+...+.+|.|.|
T Consensus       107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~------~~~~~~~~~~~~a~gss--~t~~s~l~~~v~Rka~~g~~  178 (741)
T KOG3515|consen  107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL------NAVNQRGRVGAGALGSS--YTEPSLLKQTVSRKADNGNY  178 (741)
T ss_pred             hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEee------cccCCcccccccccCce--eccccceeeEEEEecCCcee
Confidence            44678899999997644  3677999999775311      00000000000000000  01233588888899999999


Q ss_pred             EEEEEEccC--cceeeeEEEEEecCCc--cccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCceeE--
Q psy16652        160 KCEVIISLN--NKVSAEVELIVRRPPI--ISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIY--  232 (384)
Q Consensus       160 ~C~~~~~~~--~~~~~~~~l~v~~~~~--~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~--  232 (384)
                      +|.+.+...  ...-....+.+..+..  ..........+.+|+.+.|.|.+. +.|.+.++|+++............  
T Consensus       179 tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~  258 (741)
T KOG3515|consen  179 TCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEP  258 (741)
T ss_pred             EcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCC
Confidence            999975422  2233333333332221  111112224578999999999774 578889999998876554311111  


Q ss_pred             ----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE-EecCCCcccccCCcEEEEEEEe-ccCCCeEE
Q psy16652        233 ----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILECHVE-AYPPPAIV  306 (384)
Q Consensus       233 ----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~  306 (384)
                          ....+.+..-...+.-...|++.| ..   .....+.+..+|.- .+.+.......|+...+.|... ++|.+.+.
T Consensus       259 sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~---~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~  334 (741)
T KOG3515|consen  259 SGDTVSSTLVLRVGRQDLQAQLKCKASN-LL---AASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIA  334 (741)
T ss_pred             CCCcccccccccccccchhhhhhccccC-cc---ccceeeecccccccccccCcccccccccccccceeccCCCCcccee
Confidence                112343333344444567899998 11   22334445555532 2334445577888889998874 57777999


Q ss_pred             EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      |+++...........- ............+..-.....|.|.|.|.|.|.......+..+.+...
T Consensus       335 w~~~~~~~~~~~~~~~-~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l  398 (741)
T KOG3515|consen  335 WYKDTKMPKGSQKASS-KTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVL  398 (741)
T ss_pred             eeccCcccccccCccc-CCCcccceeeEEeeecccchhcCceEEccccccccccccccceecccc
Confidence            9996655433322111 111111111122344556678899999999998866655555444443

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.49  E-value=2.8e-13  Score=91.51  Aligned_cols=79  Identities=23%  Similarity=0.389  Sum_probs=67.1

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+.........++.|.|.++..+|+|.|+|.|.|..|.. ...+.|.
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   84 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELA   84 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEE
Confidence            455678899999999999999999999999998876655556677899999999999999999999998875 5555554

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.48  E-value=6.3e-13  Score=92.08  Aligned_cols=84  Identities=26%  Similarity=0.417  Sum_probs=62.5

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeec-----CCCCCeEEEEEE
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI-----ERRQFGQYACKA  353 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a  353 (384)
                      .|....+..|+.+.|.|.+.|.|.|.+.|+++|..+..........      ..++.|.|..+     +.+|.|.|.|.|
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~------~~~~~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ------LPNGSLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE------ccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence            4555667789999999999999999999999999886544311111      12445666665     578999999999


Q ss_pred             EeC-Ccce-EEEEEEEE
Q psy16652        354 ANK-YGSA-QKEIELFD  368 (384)
Q Consensus       354 ~n~-~g~~-~~~~~l~v  368 (384)
                      .|. .|.. +..+.|.|
T Consensus        79 ~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          79 QNDSLGSIVSRTARLTV   95 (95)
T ss_pred             ECCccCcEEEeeeEEeC
Confidence            999 9987 44566653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.47  E-value=7.1e-13  Score=91.14  Aligned_cols=89  Identities=24%  Similarity=0.303  Sum_probs=68.4

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++...              ....++.+..  ....+.|.|.++
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~i~~~   66 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQII--------------VSSQRHQITS--TEYKSTFEISKV   66 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEEC--------------CCCCcEEEEE--cCCeeEEEECCC
Confidence            567777888899999999999999999998899999976532              1234555544  334568999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVEL  177 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l  177 (384)
                      +.+|+|.|+|.+.|..+ ..+..+.|
T Consensus        67 ~~~D~G~Y~C~a~N~~G-~~~~~~~l   91 (92)
T cd05747          67 QMSDEGNYTVVVENSEG-KQEAQFTL   91 (92)
T ss_pred             CcccCEeEEEEEEcCCC-CEeEEEEe
Confidence            99999999999986554 45544443

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>KOG3515|consensus

Probab=99.47  E-value=2.2e-13  Score=123.14  Aligned_cols=345  Identities=15%  Similarity=0.079  Sum_probs=194.9

Q ss_pred             CCCCCcchhccccCCCCC----------CCCCCCCceEEEEEeeecceEEEEEEEeeecc--chhHHHHHHHHHhhhhcc
Q psy16652          2 IAPSPFDFVNRFQNTSTP----------WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSV--AGPSIIVALSFLISLASS   69 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~--~~~~~~~~~~~~~~~~~~   69 (384)
                      |.+-+.|.+|.+...-..          ..........+.+.....+|.|.|+|.+...+  ......   .........
T Consensus       127 P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~---~~~i~v~~~  203 (741)
T KOG3515|consen  127 PNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAK---QLTIIVEAP  203 (741)
T ss_pred             CCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccc---eeEeecccc
Confidence            445677887743322111          11111345678899999999999999987731  111110   000111112


Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .....+........+.+|..+.|.|...+ .|...++|+++.......              +......+...-...+.+
T Consensus       204 ~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~--------------sl~~~~~sg~~v~~~~~~  269 (741)
T KOG3515|consen  204 CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES--------------SLLSQEPSGDTVSSTLVL  269 (741)
T ss_pred             cccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh--------------hcccCCCCCCcccccccc
Confidence            22222222233345889999999997755 578899999977543211              000001111112223444


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~  227 (384)
                      ..-+..+.-...|.+.+    .-.....+.+..++...........+..|+...+.|.. .+.|...+.|+++.......
T Consensus       270 ~~~r~~~~~~~kc~a~n----~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~  345 (741)
T KOG3515|consen  270 RVGRQDLQAQLKCKASN----LLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGS  345 (741)
T ss_pred             cccccchhhhhhccccC----ccccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccc
Confidence            44444555577899875    12223334444444444344444557889999999986 55777899999955433222


Q ss_pred             Ccee--------EeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCC-CcccccCCcEEEEEEE
Q psy16652        228 GGSI--------YRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRP-RQGQALQYDAILECHV  297 (384)
Q Consensus       228 ~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~  297 (384)
                      ....        .....+........|.|.|+|.+.+..... .+..+.+.+-.+|.+..... .....+++.....-.+
T Consensus       346 ~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~  425 (741)
T KOG3515|consen  346 QKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPV  425 (741)
T ss_pred             cCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcc
Confidence            1111        111245556778889999999999865433 23345555555555443222 2233334433333333


Q ss_pred             eccCC-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        298 EAYPP-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       298 ~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .++|. +++.|.+++..+.....-......     ......+.++...|.|.|.|.+.|..|.....+.+-+.--|
T Consensus       426 ~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~-----~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp  496 (741)
T KOG3515|consen  426 RGAPAERTFYWTFRLYKLSQVDGGVVRVGA-----GAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP  496 (741)
T ss_pred             cCCCcccchhheecceecccccCceEEeec-----cccccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence            35554 489999998888655442222111     12223355688899999999999999999988886554443

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.47  E-value=5.1e-13  Score=85.79  Aligned_cols=66  Identities=26%  Similarity=0.467  Sum_probs=52.7

Q ss_pred             EEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        292 ILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      .|.|.+.|.|+|++.|+++|.++.... ++..         ...+|.|.+++.+|+|.|+|.|+|..........+
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV---------DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe---------CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            589999999999999999999887542 2211         24579999999999999999999986655554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.46  E-value=9.5e-13  Score=89.28  Aligned_cols=77  Identities=22%  Similarity=0.358  Sum_probs=62.6

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccCc-eeEe--------ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYR--------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~--------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      |+.+.|.|.+.|.|++.+.|++++..+..... ....        .+.|.|.++..+|+|.|+|.|.|..|.. +..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEE
Confidence            78999999999999999999999876643322 2111        2579999999999999999999999986 778888


Q ss_pred             EEEecCe
Q psy16652        269 EVEFAPV  275 (384)
Q Consensus       269 ~v~~~p~  275 (384)
                      .|..+|.
T Consensus        80 ~V~~~P~   86 (88)
T cd05735          80 TVQEPPD   86 (88)
T ss_pred             EEeCCCC
Confidence            8887663

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.46  E-value=3.9e-13  Score=88.87  Aligned_cols=73  Identities=19%  Similarity=0.449  Sum_probs=57.2

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      +.|.|.+.| .|.|.+.|+++|.++............  .......|.|..++.+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 999999999999988765443211111  1123568999999999999999999999999887765

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.46  E-value=7.7e-13  Score=91.84  Aligned_cols=80  Identities=20%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE----------eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----------RGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ....+..|+.+.|.|.+.|+|+|.+.|+|++.++........          ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            356688899999999999999999999999988765433221          1358999999999999999999999887


Q ss_pred             ceeeEEEEEEE
Q psy16652        261 GMKRNIAVEVE  271 (384)
Q Consensus       261 ~~~~~~~l~v~  271 (384)
                      . +.++.|.|.
T Consensus        91 ~-~~t~~l~V~  100 (101)
T cd05859          91 K-SYTFALQIQ  100 (101)
T ss_pred             E-EEEEEEEEE
Confidence            5 666776664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.46  E-value=7.9e-13  Score=87.28  Aligned_cols=72  Identities=28%  Similarity=0.493  Sum_probs=58.9

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      |+++.|.|.+.|.|.|.++|++++..+....   ........|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence            7899999999999999999999987665432   233456789999999999999999999998886 55555554

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=8.1e-13  Score=87.42  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=57.2

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      .|.+..+..|+.+.|.|.+.|.|.| +|.|+++|.++...  ..         ...+.|.|..+  .|.|.|.|.|+|..
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~---------~~~s~L~i~~~--~d~g~Y~C~A~N~~   70 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA---------PSPSVLNVPGL--NETSKFSCEAHNAK   70 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC---------CCCCEEEEccc--cCCeEEEEEEEecc
Confidence            4556778899999999999999999 79999999988531  11         13467888776  47899999999999


Q ss_pred             cceEE
Q psy16652        358 GSAQK  362 (384)
Q Consensus       358 g~~~~  362 (384)
                      |...+
T Consensus        71 G~~~s   75 (81)
T cd05749          71 GVTTS   75 (81)
T ss_pred             CcEEe
Confidence            97654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.46  E-value=1.4e-12  Score=89.01  Aligned_cols=92  Identities=24%  Similarity=0.405  Sum_probs=71.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCC-CeE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQ-FGQ  348 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~  348 (384)
                      ||.+ .......+.+|+.+.|.|.+.+.|+| .+.|.+++..+...  .++.+...... ....++|+|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~-~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTG-SGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccC-CCcEEEEEECCCccccCCcE
Confidence            5655 44556778899999999999888888 68999888877553  56666543322 2356789999998766 799


Q ss_pred             EEEEEEeCCcceEEEEEE
Q psy16652        349 YACKAANKYGSAQKEIEL  366 (384)
Q Consensus       349 Y~C~a~n~~g~~~~~~~l  366 (384)
                      |.|.|.|.+|+....+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999999988876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.46  E-value=4.5e-13  Score=90.42  Aligned_cols=81  Identities=12%  Similarity=0.172  Sum_probs=60.2

Q ss_pred             CCcEEEEEEEecc--CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        288 QYDAILECHVEAY--PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       288 g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+...................+.|+|.+++.+|+|.|+|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999998  78899999988765322111100000111123568999999999999999999999999999888


Q ss_pred             EEE
Q psy16652        366 LFD  368 (384)
Q Consensus       366 l~v  368 (384)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.46  E-value=9.6e-13  Score=89.67  Aligned_cols=80  Identities=26%  Similarity=0.367  Sum_probs=65.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +....+.+|+++.|.|.+.|. .|.+.|++++..+....... ..+..|.|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            345578899999999999998 89999999987765433211 1345899999999999999999999999877777777


Q ss_pred             EE
Q psy16652        269 EV  270 (384)
Q Consensus       269 ~v  270 (384)
                      .|
T Consensus        89 ~V   90 (91)
T cd05740          89 NV   90 (91)
T ss_pred             Ee
Confidence            76

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.46  E-value=3.8e-13  Score=85.10  Aligned_cols=65  Identities=25%  Similarity=0.422  Sum_probs=53.9

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.|.|.+.|.|.|.+.|+|++..+...    ...+.|.|.++..+|+|.|+|.|+|..|.. ++++.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence            479999999999999999999877522    245689999999999999999999998874 55555554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.45  E-value=1.3e-12  Score=86.81  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=61.9

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +...+.+|+.+.|.|.+.+. .+.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v   77 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSV   77 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEE
Confidence            44668899999999999885 56899999998887655555567789999999999999999999987764 444444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.44  E-value=2.2e-12  Score=89.85  Aligned_cols=96  Identities=19%  Similarity=0.281  Sum_probs=67.1

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.+.. +.+..+.+|++++|.|.+.+.|.+.+.|++.....     .+..  .....+.|+.+..  .....+|.|.++
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~-----~~~~--~~~~~~~r~~v~~--~~~~~~L~I~~v   71 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGH-----TFSE--GDKSPDGRIEVKG--QHGESSLHIKDV   71 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCc-----eecc--CCcCcCceEEEee--cCCeeEEEEeeC
Confidence            456654 66788999999999999999999999999954321     0100  0011234565543  344568999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      +.+|+|.|+|.+.|..+ ..+..+.|.
T Consensus        72 ~~~D~G~Y~C~A~N~~G-~~~~~~~l~   97 (98)
T cd05870          72 KLSDSGRYDCEAASRIG-GHQKSMYLD   97 (98)
T ss_pred             CcCCCEEEEEEEeccCC-cceeEEEEe
Confidence            99999999999986655 455555554

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.44  E-value=2.2e-12  Score=88.42  Aligned_cols=90  Identities=18%  Similarity=0.345  Sum_probs=65.2

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +.+.|....+.+|+++.|.|.+.+.|. .+.|++.+...             .....++.+.. ......+|.|.+++.+
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~-------------~~~~~~~~~~~-~~~~~~~L~I~~v~~~   67 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEK-------------LVTQQQISVVQ-NDDVRSTLTIYNANIE   67 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCE-------------eccCCCEEEEe-CCCCEEEEEEecCCcc
Confidence            455677778899999999999998865 99999854321             11123333322 1345678999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      |+|.|+|.+.|..++....++.|.|
T Consensus        68 D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          68 DAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             cCEEEEEEEEcCCCCcceeEEEEEC
Confidence            9999999999776666677776653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.44  E-value=5.2e-13  Score=91.44  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=63.1

Q ss_pred             CcccccCCcEEEEEEEec-----cCCCeEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652        282 RQGQALQYDAILECHVEA-----YPPPAIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA  354 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  354 (384)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|++++..+...  ....+..       ....|.|.+++.+|+|.|+|.++
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEc
Confidence            345678999999999998     688899999998764321  1111111       24689999999999999999999


Q ss_pred             eCCcceEEEEEEEE
Q psy16652        355 NKYGSAQKEIELFD  368 (384)
Q Consensus       355 n~~g~~~~~~~l~v  368 (384)
                      |..|..+.++.|.|
T Consensus        81 N~~g~~~~~~~L~v   94 (94)
T cd05756          81 NSTYCMKVSISLTV   94 (94)
T ss_pred             CCCccEEEEEEEEC
Confidence            99999999888865

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.43  E-value=8.4e-13  Score=86.83  Aligned_cols=73  Identities=18%  Similarity=0.335  Sum_probs=59.2

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      |.+.+.|+...+.+|+.++|.|.+.+.|.+ .+.|++||..+..               ....|.|.++ .+|+|.|+|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------------~~~~l~i~~~-~~dsG~Y~C~   64 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------------TTNSYRIRAA-NNDSGEYRCQ   64 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------------cCCeEEEeec-ccCCEEeEEE
Confidence            456677777889999999999999998764 7999999987731               2567899999 9999999999


Q ss_pred             EEeCCcceEE
Q psy16652        353 AANKYGSAQK  362 (384)
Q Consensus       353 a~n~~g~~~~  362 (384)
                      |.|..-+...
T Consensus        65 a~~~~~S~~v   74 (78)
T cd05752          65 TQGSSLSDPV   74 (78)
T ss_pred             CCCCcCCCCE
Confidence            9987444333

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.43  E-value=5e-13  Score=89.82  Aligned_cols=77  Identities=25%  Similarity=0.363  Sum_probs=57.2

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCE---Ee-cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGV---QI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+ ..........    .......|.|.+++.+|+|.|.|.|.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNV----VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCE----EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            6789999999999999999999742   11 1111100000    00124689999999999999999999999999999


Q ss_pred             EEEEE
Q psy16652        364 IELFD  368 (384)
Q Consensus       364 ~~l~v  368 (384)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            98875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.43  E-value=7.1e-13  Score=85.90  Aligned_cols=69  Identities=22%  Similarity=0.427  Sum_probs=57.0

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.+.|..|.. ...+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            4689999999999999999998876654455566789999999999999999999988874 45555544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.42  E-value=1.7e-12  Score=85.49  Aligned_cols=68  Identities=22%  Similarity=0.489  Sum_probs=50.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC----CCCeEEEEEEEeCCcceEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER----RQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      +.|.|.+.|.|.|++.|+++|.++...........     ...++|.|..+..    .|.|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-----PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-----CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            46899999999999999999998743332221110     1356788877764    37899999999999987653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.42  E-value=1.6e-12  Score=85.63  Aligned_cols=72  Identities=28%  Similarity=0.438  Sum_probs=58.3

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      |+++.|.|.+.|.|.|+++|++++..+....   .....+..|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence            6789999999999999999999988764321   123345689999999999999999999999886 55555554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.42  E-value=3.2e-12  Score=87.68  Aligned_cols=82  Identities=22%  Similarity=0.387  Sum_probs=58.7

Q ss_pred             CeEEecCCCcccc---cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEE
Q psy16652        274 PVITINRPRQGQA---LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQY  349 (384)
Q Consensus       274 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y  349 (384)
                      |.+...+....+.   .++.+.|.|.+.|.|.|.+.|++++..+..........       ....|.|.++. .+|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y   74 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------VGGNLVISNPSKAKDAGRY   74 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------ECCEEEEecCCccCCCEEE
Confidence            3444444443332   33579999999999999999999999884332222221       34678898876 4899999


Q ss_pred             EEEEEeCCcceEE
Q psy16652        350 ACKAANKYGSAQK  362 (384)
Q Consensus       350 ~C~a~n~~g~~~~  362 (384)
                      +|.|+|..|...+
T Consensus        75 ~C~a~N~~G~~~S   87 (91)
T cd04967          75 QCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEcCCCEEEe
Confidence            9999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.42  E-value=1.3e-12  Score=86.40  Aligned_cols=67  Identities=22%  Similarity=0.516  Sum_probs=50.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC----CCCeEEEEEEEeCCcceEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER----RQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  362 (384)
                      +.|.|.+.|.|.|++.|+++|..+.......+...     ...+.|.|..+..    +|+|.|.|.|+|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-----PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-----CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            46899999999999999999998854332222111     1356788888754    6899999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.41  E-value=5e-12  Score=84.88  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=59.0

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc--ceEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG--SAQKEIE  365 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~  365 (384)
                      |+.++|.|.+.+.|.+.+.|+++++......... ...........+.|.|.+++.+|+|.|.|.|+|..+  ...+++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEV-EEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEE-EEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            6889999999999999999999876432111100 011111122357899999999999999999999877  6777888


Q ss_pred             EEEe
Q psy16652        366 LFDR  369 (384)
Q Consensus       366 l~v~  369 (384)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            8775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.41  E-value=4e-12  Score=86.99  Aligned_cols=79  Identities=28%  Similarity=0.447  Sum_probs=62.7

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee----EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI----YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......    .....|.|.++..+|.|.|+|.|.|..|.. ...
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~   85 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NVS   85 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eEE
Confidence            344558899999999999999999999999997665433211    123589999999999999999999999885 555


Q ss_pred             EEEE
Q psy16652        266 IAVE  269 (384)
Q Consensus       266 ~~l~  269 (384)
                      +.|.
T Consensus        86 ~~L~   89 (90)
T cd04972          86 VQVT   89 (90)
T ss_pred             EEEe
Confidence            5554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.41  E-value=1.8e-12  Score=84.50  Aligned_cols=68  Identities=28%  Similarity=0.445  Sum_probs=53.7

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCce-eE-e-c---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-IY-R-G---NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~-~-~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +.|.|.+.|.|.|.+.|++++..+...... .. . +   .+|.|.++..+|+|.|+|.|.|..|.. +....|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence            479999999999999999999877643222 21 1 1   279999999999999999999999986 4555554

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.40  E-value=2.4e-12  Score=85.25  Aligned_cols=72  Identities=33%  Similarity=0.472  Sum_probs=59.2

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      |+.+.|.|.+.|.|.|.+.|++++..+.....   .......|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence            78999999999999999999999877654432   33456789999999999999999999998875 55566654

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.40  E-value=2.2e-12  Score=83.47  Aligned_cols=68  Identities=32%  Similarity=0.584  Sum_probs=55.2

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +.|.|.+.|.|.|.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence            4799999999999999999977665443344466789999999999999999999998875 5555554

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.40  E-value=9.7e-13  Score=87.64  Aligned_cols=69  Identities=30%  Similarity=0.550  Sum_probs=51.7

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-E
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-Q  361 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  361 (384)
                      ++|.|.+.|+|.|.+.|++++....        ...++..        ....+|.|.++..+|+|.|.|.|.|..|.. .
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--------ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            4789999999999999999753221        1122221        135789999999999999999999999977 4


Q ss_pred             EEEEEE
Q psy16652        362 KEIELF  367 (384)
Q Consensus       362 ~~~~l~  367 (384)
                      ..+.|.
T Consensus        73 ~~~~l~   78 (79)
T cd05734          73 KSMVLT   78 (79)
T ss_pred             eEEEEe
Confidence            555554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.40  E-value=8.2e-12  Score=86.72  Aligned_cols=95  Identities=21%  Similarity=0.330  Sum_probs=66.6

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.|...+....+..|+.++|.|.+.+.|.+.++|++++......       .  ....+++.+..  ......|.|.++
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~-------~--~~~~~~~~v~~--~~~~~~L~I~~v   70 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSE-------E--KTLDGHIVVRS--HARVSSLTLKYI   70 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCC-------c--cccCccEEEEc--CccEEEEEEecC
Confidence            467777776666777899999999999998999999976532110       0  01123444333  233467999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      +.+|+|.|+|.+.|..+ ..+..+.|.
T Consensus        71 ~~~D~G~Y~C~A~N~~G-~~~~~~~l~   96 (97)
T cd05869          71 QYTDAGEYLCTASNTIG-QDSQSMYLE   96 (97)
T ss_pred             ccCcCEEEEEEEecCCC-CeeEEEEEE
Confidence            99999999999986554 455555554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.40  E-value=4.1e-12  Score=88.10  Aligned_cols=81  Identities=31%  Similarity=0.541  Sum_probs=65.2

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-ee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SI--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      ....+..|+.+.|.|.+.|.|.+.+.|++++..+..... ..  ..++.|.|.++..+|+|.|+|.|.|..|.. ...+.
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~   89 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIH   89 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEE
Confidence            345688999999999999999999999999877654422 21  134579999999999999999999999985 66777


Q ss_pred             EEEEe
Q psy16652        268 VEVEF  272 (384)
Q Consensus       268 l~v~~  272 (384)
                      |.|..
T Consensus        90 L~V~~   94 (95)
T cd05730          90 LKVFA   94 (95)
T ss_pred             EEEEe
Confidence            77653

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.40  E-value=2.9e-12  Score=84.37  Aligned_cols=66  Identities=24%  Similarity=0.439  Sum_probs=49.8

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecC--CCceeeeeeeccCccccceEEEeecC----CCCCeEEEEEEEeCCcceEEE
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVITIE----RRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      +.|.|.+.|+|.|.+.|+++|..+..  +.++...       ...++|.|..+.    .+|+|.|+|.|+|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-------RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-------CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            36899999999999999999987642  3333321       135678888764    246999999999999977654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.40  E-value=8.7e-12  Score=85.32  Aligned_cols=80  Identities=25%  Similarity=0.511  Sum_probs=60.6

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ..+..+.+|+++.|.|.+.+.+.+.+.|++.+...      +..+......+.|+.+... ......|.|.+++.+|+|.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~------~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~   76 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT------LYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGE   76 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE------EEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEE
Confidence            45677899999999999999888899999987531      1222223344567765543 3356799999999999999


Q ss_pred             EEEEEEE
Q psy16652        159 YKCEVII  165 (384)
Q Consensus       159 Y~C~~~~  165 (384)
                      |+|.+..
T Consensus        77 YtC~~~t   83 (95)
T cd05882          77 YTCSIFT   83 (95)
T ss_pred             EEEEEEe
Confidence            9999975

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.40  E-value=2e-12  Score=82.93  Aligned_cols=60  Identities=25%  Similarity=0.478  Sum_probs=51.1

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.|.|.+.|.|.|.+.|++++..+... .....+..|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~   60 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE   60 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-CEEccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence            368999999999999999999887653 233345689999999999999999999998865

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.40  E-value=2.7e-12  Score=83.33  Aligned_cols=69  Identities=25%  Similarity=0.522  Sum_probs=55.8

Q ss_pred             eEEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       200 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ++.|.|.+.|.|.|.++|++++..+....... .....|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence            47899999999999999999998776544332 345678999999999999999999999885 5555554

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.39  E-value=2.7e-12  Score=83.99  Aligned_cols=71  Identities=30%  Similarity=0.531  Sum_probs=58.0

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccCceeE-eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      |+.+.|.|.+.|.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|.. +..+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence            68899999999999999999999887654433332 34689999999999999999999998875 5555554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.39  E-value=1.9e-12  Score=84.58  Aligned_cols=68  Identities=29%  Similarity=0.465  Sum_probs=53.6

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCce-eE-ecc----EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-IY-RGN----ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~-~~~----~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +.|.|.+.|.|.|.+.|++++..+...... .. ...    .|.|.++..+|+|.|+|.|.|..|.. +....|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence            479999999999999999998877543222 22 121    69999999999999999999999986 5555554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.39  E-value=5e-12  Score=86.02  Aligned_cols=80  Identities=33%  Similarity=0.521  Sum_probs=64.2

Q ss_pred             CceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCce--eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652        190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGS--IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      +....+.+|+++.|.|.+ .+.|.+.+.|++++..+......  ....+.|.|.+++.+|+|.|+|.+.|..|...+..+
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   82 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA   82 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence            455678899999999998 78899999999998776653222  223568999999999999999999999888666665


Q ss_pred             EEE
Q psy16652        267 AVE  269 (384)
Q Consensus       267 ~l~  269 (384)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05724          83 RLS   85 (86)
T ss_pred             EEE
Confidence            554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.39  E-value=5.6e-12  Score=86.39  Aligned_cols=79  Identities=24%  Similarity=0.387  Sum_probs=63.0

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE---e--ccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY---R--GNILKIPNITKTDRGTYYCVAQNGVGRGMKR  264 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  264 (384)
                      +..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+........   .  ...|.|.++..+|+|.|+|.+.|..|.. +.
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~   86 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TV   86 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-ee
Confidence            5667899999999999999999999999999877655433221   1  1379999999999999999999998875 55


Q ss_pred             EEEEE
Q psy16652        265 NIAVE  269 (384)
Q Consensus       265 ~~~l~  269 (384)
                      .+.|.
T Consensus        87 ~~~v~   91 (92)
T cd05891          87 DVTVS   91 (92)
T ss_pred             EEEEE
Confidence            55543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.39  E-value=3.8e-12  Score=86.34  Aligned_cols=77  Identities=25%  Similarity=0.429  Sum_probs=61.5

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+......   .  .....|.|.++..+|+|.|+|.+.|..|.. ...+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence            45788999999999999999999999998877544321   1  123479999999999999999999999875 55666


Q ss_pred             EEE
Q psy16652        268 VEV  270 (384)
Q Consensus       268 l~v  270 (384)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            543

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.39  E-value=4.5e-12  Score=85.28  Aligned_cols=75  Identities=27%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             ceEEEEEEecccCCC--eEEEEeCCCcccccC--cee------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        199 QTVYLYCYANGFPAP--TISWRRDNSAALSTG--GSI------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       199 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +.+.|.|.+.|.|.|  .+.|++++..+....  ...      ...+.|.|.+++.+|+|.|+|.|.|..|.. ++.+.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence            468999999998876  689999987664321  111      124689999999999999999999999876 778888


Q ss_pred             EEEecC
Q psy16652        269 EVEFAP  274 (384)
Q Consensus       269 ~v~~~p  274 (384)
                      .|..+|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            888765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.38  E-value=3.5e-12  Score=81.91  Aligned_cols=67  Identities=27%  Similarity=0.483  Sum_probs=52.9

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      |+.+.|.|.+.|.|.|.+.|++++..+............|.|.++.  |+|.|+|.|.|..|.. ..++.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~-~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMI-EATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEE-EEEEE
Confidence            6789999999999999999999998765544333345578898874  7899999999998875 44433

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.38  E-value=3.5e-12  Score=84.39  Aligned_cols=75  Identities=24%  Similarity=0.431  Sum_probs=59.6

Q ss_pred             CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +....+.+|+++.|.|.+.|.|.| .+.|++++..+...  .....+.|.|..+  .|+|.|.|.|+|..|...++...|
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            556788999999999999999999 79999999876531  1224568999887  468999999999999765555544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.38  E-value=7.7e-12  Score=84.98  Aligned_cols=81  Identities=22%  Similarity=0.383  Sum_probs=64.8

Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+..........    .......|.|..+..+|.|.|.|.|.|..|..+.+
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~   80 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT   80 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence            45678999999999999999999999998886554332211    11134579999999999999999999999999888


Q ss_pred             EEEEE
Q psy16652        364 IELFD  368 (384)
Q Consensus       364 ~~l~v  368 (384)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05729          81 YKVDV   85 (85)
T ss_pred             EEEeC
Confidence            88764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.38  E-value=2.6e-12  Score=83.41  Aligned_cols=69  Identities=28%  Similarity=0.620  Sum_probs=56.0

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.|.|.+.|.|.|.+.|++++..+..... ....+..|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            46899999999999999999876654322 22345689999999999999999999999985 66666665

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.38  E-value=3.5e-12  Score=84.30  Aligned_cols=73  Identities=19%  Similarity=0.440  Sum_probs=54.4

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCc--eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQH--YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      +.|.|.+.+ .|.+.+.|+++|..+.....  ..+...   .....+.|.|.+++.+|+|.|+|.|+|..|..+.++.+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~   76 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR---KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV   76 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE---eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence            468999875 67789999999998854321  111110   11235679999999999999999999999998887653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.37  E-value=1.3e-11  Score=85.87  Aligned_cols=94  Identities=20%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++......         .....+++.+..  ......|.|.++
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~L~I~~v   69 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEG---------DKSLDGRIVVRG--HARVSSLTLKDV   69 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCC---------CccccceEEEeC--CccEEEEEECcC
Confidence            46665 355677899999999999999998899999976431100         001123444432  344568999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      +.+|+|.|+|.+.|..+. .+..+.|.
T Consensus        70 ~~~D~G~Y~C~a~N~~G~-~~~s~~l~   95 (96)
T cd05732          70 QLTDAGRYDCEASNRIGG-DQQSMYLE   95 (96)
T ss_pred             CcCcCEEeEEEEEeCCCC-cEEEEEEe
Confidence            999999999999976654 45666554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.37  E-value=3.4e-12  Score=83.62  Aligned_cols=70  Identities=33%  Similarity=0.553  Sum_probs=56.4

Q ss_pred             EEEEEEecccCCCeEEEEeCCCccccc--Cce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALST--GGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ++|.|.+.|.|.|.+.|++++..+...  ... ...++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            479999999999999999998766522  222 2235689999999999999999999999987677777765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.36  E-value=7.1e-12  Score=86.19  Aligned_cols=72  Identities=29%  Similarity=0.500  Sum_probs=57.9

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCcccccCc--eeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +|+.+.|.|.+.|.|.|.+.|++++..+.....  ....++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            578999999999999999999999987754322  23356789998874 6999999999999999876555544

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.36  E-value=1e-11  Score=85.43  Aligned_cols=81  Identities=21%  Similarity=0.390  Sum_probs=59.2

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ++++.+.+|+++.|.|.+.+.+.+.+.|++.+..      .+...+.....++|+.+... .....+|.|.+++.+|+|.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~------~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~   76 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQ   76 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCe------EEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEE
Confidence            4567789999999999999888889999964431      11112222334567766332 3456789999999999999


Q ss_pred             EEEEEEEc
Q psy16652        159 YKCEVIIS  166 (384)
Q Consensus       159 Y~C~~~~~  166 (384)
                      |+|.+.+.
T Consensus        77 Y~C~~~t~   84 (95)
T cd07701          77 YTCSLFTM   84 (95)
T ss_pred             EEEEeEee
Confidence            99999864

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.36  E-value=7.2e-12  Score=84.44  Aligned_cols=75  Identities=29%  Similarity=0.476  Sum_probs=59.9

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ....|+++.|.|.+.+.|.|.+.|++++..+........  ....|.|.+++.+|+|.|+|.+.|..|.. +..+.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEe
Confidence            456799999999999999999999999887654433222  23579999999999999999999998874 5555554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.36  E-value=1.2e-11  Score=84.73  Aligned_cols=71  Identities=27%  Similarity=0.397  Sum_probs=57.6

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccc-cCceeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      |..+.|.|.+.|.|.|.++|++++..+.. .......++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            45799999999999999999999877643 23344557789999885 6899999999999999876666555

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.35  E-value=8.7e-12  Score=87.67  Aligned_cols=97  Identities=22%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE--e
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI--K  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i--~  149 (384)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++........         ....+.....  .+....+.+  .
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~---------~~~~~~~~~~--~~~~~~~~i~~~   69 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKD---------DPRSHRIVLP--SGSLFFLRVVHG   69 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccC---------CCCcceEEec--CCcEEEEEeecc
Confidence            47788888889999999999999999999889999998754211000         0011111111  111222222  3


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .++.+|+|.|+|.+.|..+...+..+.|.|
T Consensus        70 ~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          70 RKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            347899999999999877766777777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=2.7e-12  Score=84.40  Aligned_cols=77  Identities=21%  Similarity=0.268  Sum_probs=57.7

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      |.+++.|+...+.+|++|+|.|.+.+.+. ..+.|++++...               .           .....|.|.++
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l---------------~-----------~~~~~l~i~~~   54 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL---------------E-----------TTTNSYRIRAA   54 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe---------------e-----------ccCCeEEEeec
Confidence            46777888888999999999999988664 579999987531               0           01236899999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                       .+|+|.|+|.+.+.   ..+..+.|.|
T Consensus        55 -~~dsG~Y~C~a~~~---~~S~~v~l~V   78 (78)
T cd05752          55 -NNDSGEYRCQTQGS---SLSDPVHLEV   78 (78)
T ss_pred             -ccCCEEeEEECCCC---cCCCCEEEeC
Confidence             99999999998642   4555555543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.35  E-value=2.3e-11  Score=86.04  Aligned_cols=77  Identities=22%  Similarity=0.393  Sum_probs=61.7

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCcccccCcee---------EeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEE
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---------YRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      .|..+.|.|.+.|.|.+.+.|++++..+.......         ...+.|.|.++. .+|.|.|+|.|.|..|.. ...+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEE
Confidence            56899999999999999999999987765332211         113579999997 589999999999999986 7788


Q ss_pred             EEEEEecC
Q psy16652        267 AVEVEFAP  274 (384)
Q Consensus       267 ~l~v~~~p  274 (384)
                      .|.+...|
T Consensus       101 ~L~~~~~p  108 (109)
T cd05773         101 QLVSTSRP  108 (109)
T ss_pred             EEEecCCC
Confidence            88887665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.35  E-value=6.9e-12  Score=84.81  Aligned_cols=75  Identities=23%  Similarity=0.254  Sum_probs=59.8

Q ss_pred             ceEEEEEEecccCCC--eEEEEeCCCcccccCc-----e---eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        199 QTVYLYCYANGFPAP--TISWRRDNSAALSTGG-----S---IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       199 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-----~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +++.|.|.+.+.|.+  .+.|++++..+.....     .   ....+.|.|.+++.+|+|.|+|.|.|..+.. +....|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence            468999999988877  6799999887653321     1   1135689999999999999999999988875 778889


Q ss_pred             EEEecC
Q psy16652        269 EVEFAP  274 (384)
Q Consensus       269 ~v~~~p  274 (384)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd04970          80 IVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            888776

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.35  E-value=9.6e-12  Score=81.73  Aligned_cols=69  Identities=28%  Similarity=0.446  Sum_probs=55.5

Q ss_pred             eEEEEEEecccCCCeEEEEeCCCcccccCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       200 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ++.|.|.+.|.|.|.+.|++++..+........    ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence            378999999999999999999987744433322    24589999999999999999999998875 5555554

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.34  E-value=4.6e-12  Score=81.79  Aligned_cols=67  Identities=31%  Similarity=0.590  Sum_probs=53.9

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +.|.|.+.|.|.|.+.|++++..+....... ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            4799999999999999999987765443332 246789999999999999999999999885 444433

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.34  E-value=1e-11  Score=85.96  Aligned_cols=81  Identities=31%  Similarity=0.547  Sum_probs=62.9

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCC-----CCCCCeEEEEEEEeC-CCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNI-----TKTDRGTYYCVAQNG-VGR  260 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~  260 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+.....   ....++.+.|.++     ..+|.|.|+|.+.|. .|.
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            4456678899999999999999999999999987754432   2233456777665     688999999999999 888


Q ss_pred             ceeeEEEEEE
Q psy16652        261 GMKRNIAVEV  270 (384)
Q Consensus       261 ~~~~~~~l~v  270 (384)
                      ..++.+.|.|
T Consensus        86 ~~s~~~~l~v   95 (95)
T cd05722          86 IVSRTARLTV   95 (95)
T ss_pred             EEEeeeEEeC
Confidence            7677776653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.34  E-value=2e-11  Score=84.02  Aligned_cols=71  Identities=25%  Similarity=0.375  Sum_probs=57.2

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccC--ceeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG--GSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      |+++.|.|.+.|.|.+.++|++++..+....  .....++.|.|.++. .+|+|.|+|.|+|..|...++.+.|
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            4689999999999999999999998775332  333456789998765 6999999999999999876666554

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.34  E-value=8.5e-12  Score=82.88  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             ceEEEEEEecc--cCCCeEEEEeCCCccccc--Ccee-E-----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        199 QTVYLYCYANG--FPAPTISWRRDNSAALST--GGSI-Y-----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       199 ~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~--~~~~-~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +++.|.|.+.+  .+++.+.|++++..+...  .... .     ..+.|.|.+++.+|+|.|+|.|.|..+.. +....|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence            46899999965  456799999999888532  2222 1     24579999999999999999999998876 788889


Q ss_pred             EEEecC
Q psy16652        269 EVEFAP  274 (384)
Q Consensus       269 ~v~~~p  274 (384)
                      .|..||
T Consensus        80 ~V~~pP   85 (85)
T cd05853          80 IVRGPP   85 (85)
T ss_pred             EEecCC
Confidence            998876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.34  E-value=4.4e-12  Score=81.48  Aligned_cols=60  Identities=25%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             EEEEEEecccCCCeEEEEeCCCccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.|.|.+.|.|.|++.|++++.++... ......+.+|.|.++..+|+|.|+|.+.+....
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~   61 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYN   61 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccc
Confidence            368999999999999999999876554 223344568999999999999999999996443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.33  E-value=1.5e-11  Score=84.18  Aligned_cols=75  Identities=32%  Similarity=0.491  Sum_probs=59.3

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCccc--------ccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAAL--------STGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      |+.+.|.|.+.+.|.|.+.|++++....        ...... ..+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEE
Confidence            6889999999999999999999876431        111111 235689999999999999999999999986 667888


Q ss_pred             EEEec
Q psy16652        269 EVEFA  273 (384)
Q Consensus       269 ~v~~~  273 (384)
                      .|...
T Consensus        80 ~V~~~   84 (90)
T cd05726          80 EVTDV   84 (90)
T ss_pred             EEeec
Confidence            87654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.33  E-value=1.2e-11  Score=81.03  Aligned_cols=68  Identities=28%  Similarity=0.396  Sum_probs=53.3

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCc-eeE-ec----cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGG-SIY-RG----NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~-~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +.|.|.+.|.|.|.+.|++++..+..... ... ..    .+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence            47999999999999999999987764322 211 11    269999999999999999999999876 5555554

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.33  E-value=8.7e-12  Score=82.35  Aligned_cols=70  Identities=30%  Similarity=0.592  Sum_probs=54.7

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCce-e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v  270 (384)
                      ++|.|.+.|.|.|.+.|++++..+...... .  .....|.|.++..+|+|.|+|.+.|..|... +..++|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            479999999999999999998876544321 1  1245899999999999999999999988753 34566555

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.33  E-value=3.1e-11  Score=86.16  Aligned_cols=90  Identities=20%  Similarity=0.243  Sum_probs=66.1

Q ss_pred             eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      ..+..+.+.+|++|+|.|.+...+...+.|++.........+............+|+.+..+.....+.|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            34566778999999999999876777999999764322222222222222245678888776567889999999999999


Q ss_pred             eeEEEEEEEc
Q psy16652        157 GIYKCEVIIS  166 (384)
Q Consensus       157 G~Y~C~~~~~  166 (384)
                      |.|.|.+.+.
T Consensus        83 G~Y~C~~~~~   92 (109)
T cd04983          83 AVYFCALSES   92 (109)
T ss_pred             EEEEEEEecC
Confidence            9999999754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.32  E-value=1.5e-11  Score=84.15  Aligned_cols=78  Identities=21%  Similarity=0.304  Sum_probs=60.2

Q ss_pred             ceEEeecCceEEEEEEecc-----cCCCeEEEEeCCCccccc----CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        191 RSVIVSEGQTVYLYCYANG-----FPAPTISWRRDNSAALST----GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ....+.+|+.+.|.|.+.+     .|.+.+.|++++..+...    ......+..|.|.++..+|+|.|+|.+.|..|..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            3456789999999999988     678899999998654321    1222346789999999999999999999988775


Q ss_pred             eeeEEEEE
Q psy16652        262 MKRNIAVE  269 (384)
Q Consensus       262 ~~~~~~l~  269 (384)
                       +..+.|.
T Consensus        87 -~~~~~L~   93 (94)
T cd05756          87 -KVSISLT   93 (94)
T ss_pred             -EEEEEEE
Confidence             4455544

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.31  E-value=1.5e-11  Score=81.50  Aligned_cols=67  Identities=22%  Similarity=0.369  Sum_probs=52.0

Q ss_pred             cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEc
Q psy16652         87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS  166 (384)
Q Consensus        87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  166 (384)
                      |+++.|.|.+.+.|.+.+.|++++...              ....++.+..  ......|.|.+++.+|+|.|+|.+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~   64 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHV--------------PDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINT   64 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeEC--------------CCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEec
Confidence            789999999999999999999876431              1223444443  344568999999999999999999876


Q ss_pred             cCc
Q psy16652        167 LNN  169 (384)
Q Consensus       167 ~~~  169 (384)
                      .+.
T Consensus        65 ~G~   67 (78)
T cd05743          65 RGM   67 (78)
T ss_pred             CCE
Confidence            554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.31  E-value=1.4e-11  Score=83.32  Aligned_cols=76  Identities=17%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             CCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        280 RPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      |....+.+|+.++|.|.+.+ .|.+.+.|++++..+....           ....+.|.|.+++.+|+|.|.|.|.|..|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~-----------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g   76 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA-----------MDFNGILTIRNVQLSDAGTYVCTGSNMLD   76 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc-----------cccCCEEEECCCCHHHCEEEEEEEeccCC
Confidence            34456789999999999975 6888999999987653211           01356899999999999999999999999


Q ss_pred             ceEEEEEE
Q psy16652        359 SAQKEIEL  366 (384)
Q Consensus       359 ~~~~~~~l  366 (384)
                      ...++..|
T Consensus        77 ~~~~~~~l   84 (85)
T cd05754          77 TDEATATL   84 (85)
T ss_pred             eEeEEEEE
Confidence            99988776

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.31  E-value=2e-11  Score=81.38  Aligned_cols=68  Identities=21%  Similarity=0.388  Sum_probs=55.8

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      |....+..|+++.|.|.+.+ |.+.+.|++||.++..+. ++.+         ....|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~---------~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL---------YRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE---------ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            45567789999999999865 678999999999997653 3322         24569999999999999999999985

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.29  E-value=2.4e-11  Score=79.50  Aligned_cols=66  Identities=23%  Similarity=0.361  Sum_probs=52.5

Q ss_pred             EEEEEecccCCCeEEEEeCCCcccccCcee---------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        202 YLYCYANGFPAPTISWRRDNSAALSTGGSI---------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       202 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      -|.|.+.|.|.|+++|++++..+.......         .....|.|.++..+|+|.|+|.|+|..|.. ++++.+
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~   76 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA   76 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence            378999999999999999998886543321         123479999999999999999999999976 555544

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=2.6e-11  Score=79.65  Aligned_cols=71  Identities=28%  Similarity=0.552  Sum_probs=55.0

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcc-cccCc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAA-LSTGG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      |+.+.|.|.+.|.|.|.+.|++++... ..... .....++|.|..+..+|+|.|+|.|.|..|.. +..+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence            688999999999999999999754333 32222 22356789999999999999999999998875 5555554

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.29  E-value=2.7e-11  Score=80.37  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=52.3

Q ss_pred             EEEEEecccCCCeEEEEeCCCcccccCceeE-----------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        202 YLYCYANGFPAPTISWRRDNSAALSTGGSIY-----------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       202 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      -|.|.+.|.|.|.++|++++..+........           ....|.|.+++.+|+|.|+|.|.|..|.. +..+.+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~   78 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISA   78 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEe
Confidence            3789999999999999999988765542211           13469999999999999999999999986 454444

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.28  E-value=1.7e-11  Score=79.95  Aligned_cols=69  Identities=33%  Similarity=0.617  Sum_probs=54.4

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.|.|.+.|.|.|.+.|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            479999999999999999988765433221 1234689999999999999999999998875 56666655

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.27  E-value=2e-11  Score=81.62  Aligned_cols=77  Identities=26%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             CcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         79 SQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      ++...+.+|++|+|.|.+.. .+...+.|++++....              .          ......|.|.+++.+|+|
T Consensus         6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~--------------~----------~~~~~~l~I~~~~~~dsG   61 (83)
T cd05753           6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK--------------Y----------SHSNSNLSIPQATLSDSG   61 (83)
T ss_pred             CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc--------------c----------cCCCceEEECccCHHHCE
Confidence            44556899999999999854 4566899999764310              0          112346999999999999


Q ss_pred             eEEEEEEEccCcceeeeEEEEE
Q psy16652        158 IYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       158 ~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .|+|.+.+..+...+..+.|.|
T Consensus        62 ~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          62 SYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             EEEEEEEeCCceecCCCEEEEC
Confidence            9999999887777777777764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.27  E-value=3.8e-11  Score=80.88  Aligned_cols=83  Identities=14%  Similarity=0.206  Sum_probs=59.0

Q ss_pred             CCcEEEEEEEeccCCC--eEEEEECCEEecCCCceee-eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652        288 QYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSV-SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI  364 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  364 (384)
                      |+++.|.|.+.+.+.+  .+.|.+++........... ...........+.|.|.+++.+|+|.|+|.|+|..|......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            6789999999876544  7899988764421110000 000001122457899999999999999999999999999999


Q ss_pred             EEEEee
Q psy16652        365 ELFDRE  370 (384)
Q Consensus       365 ~l~v~~  370 (384)
                      .|.|.+
T Consensus        81 ~~~V~~   86 (86)
T cd05862          81 IVIVHE   86 (86)
T ss_pred             EEEEeC
Confidence            998864

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=2.9e-11  Score=79.60  Aligned_cols=69  Identities=29%  Similarity=0.553  Sum_probs=53.0

Q ss_pred             EEEEEEecccCCCeEEEEeCCCccccc--C-cee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALST--G-GSI--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~--~-~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.|.|.+.|.|.|.++|++++......  . ...  ..+..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence            468999999999999999988643221  1 111  234689999999999999999999998875 56666655

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.27  E-value=3.4e-11  Score=80.16  Aligned_cols=70  Identities=30%  Similarity=0.638  Sum_probs=53.6

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccc--------cCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALS--------TGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~--------~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ++|.|.+.|.|.|.+.|++++.....        .... ...+.+|.|.++..+|+|.|.|.|.|..|...++.+.|+|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            47999999999999999997542211        1111 2345789999999999999999999999987676666653

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.27  E-value=4e-11  Score=81.52  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             cccccCCcEEEEEEEec-----cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        283 QGQALQYDAILECHVEA-----YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      +.+.+|+...|.|...+     +|.|.+.|++++.++....+.. .        ....|.|.++..+|+|.|+|.|.|..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~--------~~~~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V--------KGSKLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e--------cCCEEEEeeCChhhCEEEEEEEEecC
Confidence            34678899999998754     2577999999999987554321 1        36789999999999999999999998


Q ss_pred             cceEEEEEEEEe
Q psy16652        358 GSAQKEIELFDR  369 (384)
Q Consensus       358 g~~~~~~~l~v~  369 (384)
                      |.....++..+.
T Consensus        76 ~~~~~~~t~t~~   87 (92)
T cd05757          76 NGKQYNVTRTIS   87 (92)
T ss_pred             CCEEEEEEEEEE
Confidence            887766655543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.26  E-value=3.8e-11  Score=81.98  Aligned_cols=81  Identities=15%  Similarity=0.260  Sum_probs=61.2

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCc--eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC-c
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH--YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY-G  358 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g  358 (384)
                      ...+.+|+.+.|.|.+.+ |.+.+.|++++..+.....  .....       ....|.|.+++.+|+|.|.|.|.|.. +
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   76 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-------TEDGLLIRSVSPADAGVYTCQSVEHGFK   76 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-------cCCCEEEccCCHHHCEEEEEEEecCccc
Confidence            345778999999999987 8889999999987755431  11111       23459999999999999999999754 5


Q ss_pred             ceEEEEEEEEee
Q psy16652        359 SAQKEIELFDRE  370 (384)
Q Consensus       359 ~~~~~~~l~v~~  370 (384)
                      ....++.|.|.+
T Consensus        77 ~~~~~~~l~V~~   88 (89)
T cd04979          77 QTLATYSLNVLE   88 (89)
T ss_pred             eeEeEEEEEEec
Confidence            556667777754

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.26  E-value=1.2e-10  Score=79.04  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=61.2

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      .+++.+.+|++++|+|.+.+.....+.|++.+..     +.+ ........+.||..... .+...+|.|.+++.+|+|.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~-----~i~-~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~   76 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQ-----TIY-FRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGR   76 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCc-----EEE-ecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEE
Confidence            4567789999999999998877778999976632     222 22233447788887753 4567889999999999999


Q ss_pred             EEEEEEE
Q psy16652        159 YKCEVII  165 (384)
Q Consensus       159 Y~C~~~~  165 (384)
                      |+|++..
T Consensus        77 Y~Cqv~t   83 (95)
T cd05881          77 YFCQLYT   83 (95)
T ss_pred             EEEEEEc
Confidence            9999974

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.26  E-value=9.3e-11  Score=80.06  Aligned_cols=81  Identities=19%  Similarity=0.308  Sum_probs=63.1

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      +....+.+|+++.|.|.+.+ |.+.+.|++++..+....    ........|.|.++..+|+|.|+|.+.+..+.....+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            44567889999999999977 778999999987665432    2333445799999999999999999998766555666


Q ss_pred             EEEEEE
Q psy16652        266 IAVEVE  271 (384)
Q Consensus       266 ~~l~v~  271 (384)
                      +.|.|.
T Consensus        82 ~~l~V~   87 (89)
T cd04979          82 YSLNVL   87 (89)
T ss_pred             EEEEEe
Confidence            777664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.25  E-value=9.8e-11  Score=79.15  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             CCcccccCCcEEEEEEEeccCCCe-EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ..+.+.+|+.+.|.|.+.++|+|. +.|.+++..+.+.....+...........+.|.+..+..+|.|.|+|.|.|..++
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            345688999999999999999997 9999998876544432222222122234578999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                      .+.+|.|.|+
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9999999875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.24  E-value=6.4e-11  Score=80.85  Aligned_cols=84  Identities=17%  Similarity=0.274  Sum_probs=54.0

Q ss_pred             cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEee-----CCCCceEEEEEeecCCCCCeeEEE
Q psy16652         87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTT-----DPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      |+.++|.|.+.+.|.+.+.|+|++... ...  +...+.     .......     ........|.|.+++.+|+|.|+|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~-g~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   72 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVN-GSK--YGPDGL-----PYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTC   72 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccC-Cce--eCCCCC-----ceEEEEEecCCcccccccceEEEeccccccCcEEEE
Confidence            789999999999999999999975210 000  000000     0001110     001234579999999999999999


Q ss_pred             EEEEccCcceeeeEEEEE
Q psy16652        162 EVIISLNNKVSAEVELIV  179 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~l~v  179 (384)
                      .+.|..+ .....+.|.|
T Consensus        73 ~A~N~~G-~~~~sa~L~V   89 (90)
T cd04974          73 LAGNSIG-PSHHSAWLTV   89 (90)
T ss_pred             EeecccC-cccCCEEEEe
Confidence            9986554 4566666765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.24  E-value=8.6e-11  Score=80.33  Aligned_cols=72  Identities=28%  Similarity=0.442  Sum_probs=53.6

Q ss_pred             CceEEEEEEecccCCCeEEEEeCC----CcccccCce---e-E---------eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDN----SAALSTGGS---I-Y---------RGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~---~-~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      |+.+.|.|.+.+.|.|.+.|++++    ..+......   . .         ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            688999999999999999999843    222211110   0 0         1147999999999999999999999997


Q ss_pred             ceeeEEEEEE
Q psy16652        261 GMKRNIAVEV  270 (384)
Q Consensus       261 ~~~~~~~l~v  270 (384)
                      . +.+..|.|
T Consensus        81 ~-~~~a~L~V   89 (90)
T cd05858          81 S-HHSAWLTV   89 (90)
T ss_pred             c-cceEEEEE
Confidence            6 55566654

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.23  E-value=7.1e-11  Score=77.77  Aligned_cols=68  Identities=26%  Similarity=0.471  Sum_probs=51.2

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccC--cee--EeccEEEEcCCCC----CCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTG--GSI--YRGNILKIPNITK----TDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +.|.|.+.|.|.|+++|++++..+....  ...  ..++.|.|..+..    .|+|.|+|.|.|..|...++.+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            4799999999999999999987653222  122  1356788877764    378999999999999876665554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.23  E-value=1.5e-10  Score=80.09  Aligned_cols=91  Identities=22%  Similarity=0.348  Sum_probs=60.8

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      .+.+.+.+|++++|.|.+.+.+.+.+.|++.+..     ... ........+.||.+... ......|.|.+++.+|+|.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~-----~~~-~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~   76 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQ-----TLY-FNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGR   76 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCc-----EEE-eccccccccCcEEEEcC-CCCeeEEEEccCCcccCEE
Confidence            4456689999999999998777779999964321     111 11111123467766432 3455789999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEE
Q psy16652        159 YKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      |+|.+.....  .+..+.|.
T Consensus        77 Y~C~~~~~~~--~~~~~~~~   94 (95)
T cd05717          77 YTCSLYTMPV--QTAKATVT   94 (95)
T ss_pred             EEEEEecCCC--ceEEEEEE
Confidence            9999975432  34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.23  E-value=1.5e-10  Score=77.73  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEc
Q psy16652         87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS  166 (384)
Q Consensus        87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  166 (384)
                      |++++|.|.+.+.+.+.+.|++.++....   ..       ...  ............+|.|.+++.+|+|.|+|.+.+.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~---~~-------~~~--~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~   68 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGK---GI-------PEV--EEVKVPATTLRSTLTFPHATVEDSGTYECAAHES   68 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCC---Cc-------eEE--EEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence            78999999999988899999987653110   00       000  0111111233568999999999999999999865


Q ss_pred             cC-cceeeeEEEEEe
Q psy16652        167 LN-NKVSAEVELIVR  180 (384)
Q Consensus       167 ~~-~~~~~~~~l~v~  180 (384)
                      .. ...+..+.|.|.
T Consensus        69 ~~~~~~~~sv~i~V~   83 (84)
T cd05861          69 TQDQKAFKKVNITVH   83 (84)
T ss_pred             ccCcceeEEEEEEEe
Confidence            44 345677777764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.23  E-value=1.6e-10  Score=79.02  Aligned_cols=82  Identities=11%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      .+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.        .+.++.+..    .......|.|.+++.+|+|.|+|.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK----STPTELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe----CCCceEEEEECCCCcccCEEEEEE
Confidence            45667899999999999999999999998875431        122222211    111356899999999999999999


Q ss_pred             EEeCCcceEEEEEEE
Q psy16652        353 AANKYGSAQKEIELF  367 (384)
Q Consensus       353 a~n~~g~~~~~~~l~  367 (384)
                      +... -..++..+|.
T Consensus        81 ~~t~-~~~~~~~~~~   94 (95)
T cd05882          81 IFTM-PVRTAKATVT   94 (95)
T ss_pred             EEee-ccccEEEEEE
Confidence            9983 2444454544

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.23  E-value=9.5e-11  Score=80.56  Aligned_cols=83  Identities=14%  Similarity=0.218  Sum_probs=58.9

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEE--------ecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ--------IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      .+..+.+|+.+.|.|.+.+.|.+.+.|++.+..        ...+.++....    ......+|.|.+++.+|+|.|.|.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR----ASWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE----CCCCcEEEEECcCCcccCEEEEEE
Confidence            456788999999999999999999999863322        22233433211    111356799999999999999999


Q ss_pred             EEeCCcceEEEEEEEE
Q psy16652        353 AANKYGSAQKEIELFD  368 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v  368 (384)
                      +.+..+ ...+..|.|
T Consensus        81 ~~t~~~-~~~~~~l~v   95 (95)
T cd07701          81 LFTMPV-KTSKAYLTV   95 (95)
T ss_pred             eEeecC-ccEEEEEEC
Confidence            998543 355556554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.23  E-value=5.2e-11  Score=78.62  Aligned_cols=68  Identities=28%  Similarity=0.508  Sum_probs=52.0

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccC--cee--EeccEEEEcCCCC----CCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTG--GSI--YRGNILKIPNITK----TDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +.|.|.+.|.|.|+++|++++..+....  ...  ..++.|.|.++..    +|+|.|+|.|.|..|...++.+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            4789999999999999999988764322  122  2356899988753    789999999999999876655543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.22  E-value=8.1e-11  Score=78.68  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=54.5

Q ss_pred             CCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        280 RPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ++...+.+|+.++|.|.+.+ .+.+.+.|+++|..+....             ....|.|..++.+|+|.|+|.|.|..|
T Consensus         6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence            34446789999999999854 5666899999997664211             356799999999999999999999997


Q ss_pred             ce
Q psy16652        359 SA  360 (384)
Q Consensus       359 ~~  360 (384)
                      ..
T Consensus        73 ~~   74 (83)
T cd05753          73 DY   74 (83)
T ss_pred             ee
Confidence            54

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.21  E-value=7.2e-11  Score=77.73  Aligned_cols=68  Identities=26%  Similarity=0.474  Sum_probs=51.0

Q ss_pred             EEEEEEecccCCCeEEEEeCCCccc--ccCcee--EeccEEEEcCCC----CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAAL--STGGSI--YRGNILKIPNIT----KTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~--~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +.|.|.+.|.|.|.++|++++..+.  ......  ..+++|.|..+.    .+|+|.|+|.|.|..|...+..+.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            4689999999999999999987542  222222  235689888764    2469999999999999876666554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=99.21  E-value=2e-10  Score=81.29  Aligned_cols=89  Identities=16%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      +...|....+.+|++|+|.|.+.+.. ...+.|||.........+.............|+....  ......|.|.+++.
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~   80 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEP   80 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCCh
Confidence            45556677889999999999986544 5689999977543333332221111111234666543  45677899999999


Q ss_pred             CCCeeEEEEEEE
Q psy16652        154 TDAGIYKCEVII  165 (384)
Q Consensus       154 ~d~G~Y~C~~~~  165 (384)
                      +|+|.|.|.+.+
T Consensus        81 ~Dsg~Y~Ca~~~   92 (106)
T cd04980          81 EDAAVYYCQQYG   92 (106)
T ss_pred             HHCEEEEEEEeC
Confidence            999999999853

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03376 BARF1; Provisional

Probab=99.21  E-value=4.2e-10  Score=83.28  Aligned_cols=136  Identities=17%  Similarity=0.316  Sum_probs=82.5

Q ss_pred             ceeeeccCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652         81 EQIKDIAQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ++.+..|+.+.|+|.....   ..-.|.|+|.+...  ....+...++..     .+.+++.+..  +.++.+|.|.+++
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~--~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~l~   95 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGE--EQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAAN   95 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCC--CCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEeee
Confidence            3456899999999998632   45679999965311  223333222221     2344555544  3488999999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      .+|.|.|+|.++....+. ...-.|.+..|....... .......-+...+.|.+.|+|.|.+.|..+..
T Consensus        96 lSDdGtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a-~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         96 ISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHS-ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ecCCceEEEEEEcCCCce-eeeeeeeeeecceEEEEe-ccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999999998543322 111122222221111100 00011225677899998889999999987654

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.20  E-value=1.3e-10  Score=78.02  Aligned_cols=72  Identities=28%  Similarity=0.480  Sum_probs=54.1

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCc---c-cccCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSA---A-LSTGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~---~-~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      |+.+.|.|.+.|.|.|.+.|+++...   . .....     .......|.|.++..+|+|.|+|.+.|..|.. +..+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEEE
Confidence            68899999999999999999997421   1 11111     11233589999999999999999999999875 666665


Q ss_pred             EE
Q psy16652        269 EV  270 (384)
Q Consensus       269 ~v  270 (384)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            43

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.20  E-value=7.1e-11  Score=79.89  Aligned_cols=72  Identities=17%  Similarity=0.336  Sum_probs=56.5

Q ss_pred             CcccccCCcEEEEEEE-eccCCCeEEEEECCEEe--cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        282 RQGQALQYDAILECHV-EAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++.++  ..+.+..+..       .++.|.|.+++.+|.|.|+|.|+|...
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~-------~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ-------TNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC-------CCCcEEEeecCHhhCceeEEEEEeccc
Confidence            3557889999999987 78899999999998754  2233322221       468899999999999999999999875


Q ss_pred             ce
Q psy16652        359 SA  360 (384)
Q Consensus       359 ~~  360 (384)
                      ..
T Consensus        85 ~~   86 (96)
T cd05727          85 TK   86 (96)
T ss_pred             CC
Confidence            44

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.19  E-value=3.6e-10  Score=78.64  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=59.2

Q ss_pred             CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccC--ceeEe--------ccEEEEcCCCCC-CCeEEEEEEEeC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTG--GSIYR--------GNILKIPNITKT-DRGTYYCVAQNG  257 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~--~~~~~--------~~~l~i~~~~~~-d~G~Y~C~~~~~  257 (384)
                      +....+.+|+.+.|.|.+.|.|.| .+.|++++..+....  .....        .+.|.|.++..+ |.|.|.|.|.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            345668999999999999999998 699999887665432  22111        137999999984 589999999999


Q ss_pred             CCCceeeEEEE
Q psy16652        258 VGRGMKRNIAV  268 (384)
Q Consensus       258 ~~~~~~~~~~l  268 (384)
                      .|.. ...+.|
T Consensus        88 ~G~~-~~~~~L   97 (98)
T cd05758          88 FGSG-TAIISL   97 (98)
T ss_pred             CCcc-cEEEEe
Confidence            9886 444443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.19  E-value=1.6e-10  Score=76.36  Aligned_cols=70  Identities=29%  Similarity=0.525  Sum_probs=55.7

Q ss_pred             EEEEEEecccCCCeEEEEeCCCcccccCc--ee-E-eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        201 VYLYCYANGFPAPTISWRRDNSAALSTGG--SI-Y-RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~-~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      +.|.|.+.|.|.|.+.|++++..+.....  .. . .+..|.|.++..+|.|.|+|.+.|..|.. ...+.|.|+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence            36899999999999999999887654322  11 1 23579999999999999999999998886 667777764

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.18  E-value=2.7e-10  Score=76.01  Aligned_cols=67  Identities=19%  Similarity=0.339  Sum_probs=56.1

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +....+..|+++.|.|.+.+ +.+++.|++++..+... .........|.|.+++.+|+|.|+|.+.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            45677899999999999865 56799999999887655 234455678999999999999999999986

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.18  E-value=3.5e-10  Score=80.60  Aligned_cols=87  Identities=25%  Similarity=0.374  Sum_probs=61.2

Q ss_pred             eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ..|....+.+|++|+|.|.+.+ +...+.|||......+..+.........    ...+|+..... ....++|.|.+++
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~   80 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAE   80 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCC
Confidence            4566677899999999999877 6678999998754333333322222111    12456766553 2357899999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsg~Y~Ca~~~   93 (110)
T cd05899          81 PEDSAVYLCASSL   93 (110)
T ss_pred             hhhCEEEEEEeeC
Confidence            9999999999864

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.18  E-value=1.2e-10  Score=76.79  Aligned_cols=61  Identities=25%  Similarity=0.484  Sum_probs=49.6

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCCcccccCcee---E----eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        201 VYLYCYANG-FPAPTISWRRDNSAALSTGGSI---Y----RGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~---~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.|.|.+.+ .|.+.+.|++++..+.......   .    ....|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            469999998 8999999999988775433211   1    23579999999999999999999998875

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.18  E-value=2.6e-10  Score=76.90  Aligned_cols=72  Identities=26%  Similarity=0.384  Sum_probs=54.1

Q ss_pred             CceEEEEEEeccc--CCCeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652        198 GQTVYLYCYANGF--PAPTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       198 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      |+.+.|.|.+.+.  |.+.+.|.+++........         .......|.|.+++.+|+|.|+|.+.|..+.. +.+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEEE
Confidence            7899999999987  7789999987754422111         11234589999999999999999999988775 5555


Q ss_pred             EEEE
Q psy16652        267 AVEV  270 (384)
Q Consensus       267 ~l~v  270 (384)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            5544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.18  E-value=3.1e-10  Score=81.89  Aligned_cols=105  Identities=20%  Similarity=0.351  Sum_probs=72.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccc-eecc----CceeeeCCceEEeeCCCCceEEEEE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLP-ISMS----GSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ++..+..+.+.+|++|.|.|... ......+.|++.........+. ....    .......+++.+..+......+|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            34456777899999999999998 4456689999966643323222 1111    1112245677777766778899999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .+++.+|+|.|.|.+...........+.|.|
T Consensus        84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999999998653444455555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.16  E-value=2.8e-10  Score=77.39  Aligned_cols=69  Identities=20%  Similarity=0.303  Sum_probs=56.5

Q ss_pred             EEeecCceEEEEEEecc-----cCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        193 VIVSEGQTVYLYCYANG-----FPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ..+.+|++..|.|...+     .|.+.+.|++++..+.........+..|.|.++..+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            45788999999998743     2567999999998877655444467899999999999999999999976654

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.16  E-value=2.9e-10  Score=72.09  Aligned_cols=63  Identities=30%  Similarity=0.564  Sum_probs=51.0

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      +|+.+.|.|.+.+.|.+.+.|++++..+..  .....       .....|.|.+++.+|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS-------ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe-------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999998889999999999988761  11111       1456899999999999999999999865

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.15  E-value=4.1e-10  Score=75.43  Aligned_cols=78  Identities=27%  Similarity=0.549  Sum_probs=59.2

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |.+...+  ..+.+|+.+.|.|.+.+.|.+.+.|++++..+....               ..+.+..++.+|.|.|+|.|
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---------------~~~~~~~~~~~~~g~y~C~~   64 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ---------------NGLFIPNVSPEDSGNYTCRA   64 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES---------------SEEEESSEEGGGTEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee---------------eeeeeeeeccccCEEEEEEE
Confidence            4554433  557889999999999999889999999987775221               12667788899999999999


Q ss_pred             EeCCc-ceEEEEEEEE
Q psy16652        354 ANKYG-SAQKEIELFD  368 (384)
Q Consensus       354 ~n~~g-~~~~~~~l~v  368 (384)
                      .+..+ ..+.++.|.|
T Consensus        65 ~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   65 SNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCCeEeeeEEeeC
Confidence            99665 4456666654

...

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.15  E-value=2.9e-10  Score=77.94  Aligned_cols=68  Identities=32%  Similarity=0.497  Sum_probs=53.5

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCccccc--CceeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceee
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALST--GGSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKR  264 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~  264 (384)
                      .|..+.|.|.+.|.|.+.++|++++..+...  ......+..|.|.++. .+|+|.|+|.|.|..|...++
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~   88 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR   88 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence            3467999999999999999999998776322  2333455689998876 489999999999998876443

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=99.15  E-value=4.5e-10  Score=79.60  Aligned_cols=85  Identities=25%  Similarity=0.374  Sum_probs=60.7

Q ss_pred             eeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCc---eeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         83 IKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGS---LIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      .+.+|++|+|.|.+... +...+.|++.........+.......   .....+|+.+..+......+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46899999999999875 67789999977643222222222211   123456777776544478899999999999999


Q ss_pred             EEEEEEEcc
Q psy16652        159 YKCEVIISL  167 (384)
Q Consensus       159 Y~C~~~~~~  167 (384)
                      |.|.+.+..
T Consensus        82 Y~C~v~~~~   90 (105)
T cd00099          82 YYCAVSLSG   90 (105)
T ss_pred             EEEEEecCC
Confidence            999997544

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=99.14  E-value=7.6e-10  Score=79.70  Aligned_cols=90  Identities=17%  Similarity=0.265  Sum_probs=63.4

Q ss_pred             eeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ...+..+.+.+|++|+|.|..... ....+.|++.........+............+|+.+..+......+|.|.+++.+
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            445667778999999999998653 4567999997654322222222121112335788887654566789999999999


Q ss_pred             CCeeEEEEEEE
Q psy16652        155 DAGIYKCEVII  165 (384)
Q Consensus       155 d~G~Y~C~~~~  165 (384)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.14  E-value=1.9e-10  Score=78.11  Aligned_cols=81  Identities=19%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             eeeccCcEEEEEEeecCCCccEEEEEeCCCC-CCc-ccceeccCceeeeCCceEEeeCC-CCceEEEEEeecCCCCCeeE
Q psy16652         83 IKDIAQTADLKCSVQYADDYPVIWMKMDTAK-KME-PLPISMSGSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      .+.+|++|+|.|.+.+.+.+.+.|++.+... ... ...+...  .....+|+...... ..+.+.|.|.+++.+|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~--~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKG--PSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEec--ccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            4689999999999988888899999765321 100 0111100  01234455544421 34567899999999999999


Q ss_pred             EEEEEE
Q psy16652        160 KCEVII  165 (384)
Q Consensus       160 ~C~~~~  165 (384)
                      +|.+.+
T Consensus        81 ~C~v~~   86 (94)
T cd07690          81 ICEVED   86 (94)
T ss_pred             EEEECC
Confidence            999864

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=99.13  E-value=1.4e-09  Score=77.73  Aligned_cols=90  Identities=18%  Similarity=0.175  Sum_probs=58.5

Q ss_pred             CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCC-CcccceeccCcee----eeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKK-MEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +..+.+.+|++++|.|.+...+    ...+.|++...... ...+.........    ...+|+.+..+...+..+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4556689999999999986532    24699987532211 1222222222111    2234555555555677889999


Q ss_pred             ecCCCCCeeEEEEEEEccC
Q psy16652        150 EIQETDAGIYKCEVIISLN  168 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~  168 (384)
                      +++.+|+|.|+|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999986544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.13  E-value=5.2e-10  Score=76.09  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=57.6

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCE--Ee----cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE-e
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGV--QI----MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA-N  355 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n  355 (384)
                      +...+|+.+.|.|.. +.|.|.+.|++.+.  ..    ....+...         ....|.|..++.+|+|.|+|.|. |
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~~   75 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVEH   75 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEcc
Confidence            346789999999996 47889999998432  21    11222221         34569999999999999999998 5


Q ss_pred             CCcceEEEEEEEEee
Q psy16652        356 KYGSAQKEIELFDRE  370 (384)
Q Consensus       356 ~~g~~~~~~~l~v~~  370 (384)
                      ..+....+++|.|.+
T Consensus        76 ~~~~~~~~~~l~v~~   90 (91)
T cd05871          76 SFSQTLAKYTLHVIE   90 (91)
T ss_pred             CCeEEEEEEEEEEec
Confidence            777777788888764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.13  E-value=1.9e-09  Score=76.59  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=62.7

Q ss_pred             CcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCc-ccceeccCcee-----eeCCceEEeeCCCCceEEEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKME-PLPISMSGSLI-----IHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +..+.+..|+.++|.|.++..    +...+.|.+........ .+.....+...     ...+|+.+..+...+..+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            456678999999999999663    34589996544322212 23333332222     223588887777778889999


Q ss_pred             eecCCCCCeeEEEEEEEccC
Q psy16652        149 KEIQETDAGIYKCEVIISLN  168 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~  168 (384)
                      .+++.+|+|.|+|.+.+...
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCC
Confidence            99999999999999986654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>smart00409 IG Immunoglobulin

Probab=99.12  E-value=1.6e-09  Score=73.53  Aligned_cols=82  Identities=28%  Similarity=0.500  Sum_probs=65.7

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEEC-CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+.......     ....|.|.+++.+|+|.|.|.+.+..+..
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~   77 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGSA   77 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence            34567899999999999888889999998 8777645554443211     14679999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy16652        361 QKEIELFD  368 (384)
Q Consensus       361 ~~~~~l~v  368 (384)
                      ...+.|.|
T Consensus        78 ~~~~~l~V   85 (86)
T smart00409       78 SSTTTLTV   85 (86)
T ss_pred             EEEEEEEE
Confidence            88887776

>smart00410 IG_like Immunoglobulin like

Probab=99.12  E-value=1.6e-09  Score=73.53  Aligned_cols=82  Identities=28%  Similarity=0.500  Sum_probs=65.7

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEEC-CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+.......     ....|.|.+++.+|+|.|.|.+.+..+..
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~   77 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGSA   77 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence            34567899999999999888889999998 8777645554443211     14679999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy16652        361 QKEIELFD  368 (384)
Q Consensus       361 ~~~~~l~v  368 (384)
                      ...+.|.|
T Consensus        78 ~~~~~l~V   85 (86)
T smart00410       78 SSTTTLTV   85 (86)
T ss_pred             EEEEEEEE
Confidence            88887776

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.12  E-value=3.1e-10  Score=78.23  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee----CCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----DSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      |++|+|.|.........+.|++.........+...........    .+|+.+..     +.+|.|.+++.+|+|.|+|.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-----~~sL~I~~l~~~DsG~Y~c~   75 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-----NGSLLIQNLTKEDSGTYTLQ   75 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-----CceEEEccCCchhcEEEEEE
Confidence            7899999998776677899999875432221111111122222    23444432     26899999999999999999


Q ss_pred             EEEccCcceeeeEEEE
Q psy16652        163 VIISLNNKVSAEVELI  178 (384)
Q Consensus       163 ~~~~~~~~~~~~~~l~  178 (384)
                      +....+......+.|.
T Consensus        76 v~~~~~~~~~~~~~l~   91 (92)
T cd05741          76 IISTNGVTENAKFFLR   91 (92)
T ss_pred             EEcCCCcEEEEEEEEE
Confidence            9866555555555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=99.12  E-value=1.2e-09  Score=78.85  Aligned_cols=87  Identities=18%  Similarity=0.306  Sum_probs=61.8

Q ss_pred             eCcceeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+..+.+.+|++|+|.|.+.+  .+...+.|++......+..+.........     ....|+.+..+.....+.|.|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            455667899999999999876  46678999998654333333322221111     13467877765444788999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|+|.|.|.+.
T Consensus        84 ~~~~Dsg~Y~C~~~   97 (116)
T cd04982          84 LEKEDSATYYCAYW   97 (116)
T ss_pred             CCHHHCEEEEEEEe
Confidence            99999999999985

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=99.11  E-value=9.2e-10  Score=76.60  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             eeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         83 IKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      .+.+|++|+|.|.....  ....+.||+.........+............+|+....  ......|.|.+++.+|+|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEE
Confidence            46899999999998664  45679999987654434333322221112245777655  446788999999999999999


Q ss_pred             EEEEE
Q psy16652        161 CEVII  165 (384)
Q Consensus       161 C~~~~  165 (384)
                      |.+.+
T Consensus        80 C~~~~   84 (98)
T cd04984          80 CQVWD   84 (98)
T ss_pred             EEEcc
Confidence            99863

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=99.11  E-value=2e-09  Score=77.36  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=59.8

Q ss_pred             CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCc-ccceeccCc-----eeeeCCceEEeeCCCCceEEEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKME-PLPISMSGS-----LIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      |..+.+.+|++|+|.|.+....    ...+.|++........ .+.....+.     .....+|+.+..+...+..+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            5566789999999999986532    2469999865432212 222221111     11223566666555566789999


Q ss_pred             eecCCCCCeeEEEEEEEccC
Q psy16652        149 KEIQETDAGIYKCEVIISLN  168 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~  168 (384)
                      .+++.+|+|.|.|.+.+...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999986543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.11  E-value=7.9e-10  Score=74.74  Aligned_cols=70  Identities=33%  Similarity=0.483  Sum_probs=56.6

Q ss_pred             CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +....+.+|+.++|.|.+.+ .|.+.+.|++++..+..  .....+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            45567889999999999864 67789999998865432  222345789999999999999999999988765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=99.10  E-value=1.9e-09  Score=74.96  Aligned_cols=92  Identities=23%  Similarity=0.400  Sum_probs=62.3

Q ss_pred             CcEEEEEEeecCC---CccEEEEEeCCCCCCcccce-ecc-Ccee--eeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         88 QTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPI-SMS-GSLI--IHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        88 ~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      .+|+|.|......   ...|.|++.........+.. ... +...  ...+|..+..+......+|.|.+++.+|+|.|+
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3689999987543   45899999654433323322 111 1111  123577776654556778999999999999999


Q ss_pred             EEEEEccCcceeeeEEEEE
Q psy16652        161 CEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       161 C~~~~~~~~~~~~~~~l~v  179 (384)
                      |.+.+...+..+..+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            9998766666677777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.09  E-value=7e-10  Score=72.26  Aligned_cols=68  Identities=12%  Similarity=0.202  Sum_probs=49.9

Q ss_pred             cEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        290 DAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       290 ~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      .+.|+|... +.|++.++||++++++.....   ...........++|.+...+.+|.+.|+|.|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            368999995 588889999999999964321   11111111134579999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=99.09  E-value=4.7e-10  Score=77.56  Aligned_cols=90  Identities=17%  Similarity=0.286  Sum_probs=61.1

Q ss_pred             eccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceecc----CceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         85 DIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMS----GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        85 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ..|++|+|.|.... .....+.|++...     ...+...    .......++|+.+........+|.|.+++.+|+|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~-----~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y   76 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTS-----LAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSY   76 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCE-----eEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEE
Confidence            46999999998865 4566899999732     1222221    222233444443333344567899999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEE
Q psy16652        160 KCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +|.+....+......+.|.|
T Consensus        77 ~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          77 RAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEEEcCCCCeEEEEEEEEe
Confidence            99998766666677777766

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=99.07  E-value=1.3e-09  Score=76.00  Aligned_cols=83  Identities=20%  Similarity=0.370  Sum_probs=60.5

Q ss_pred             eeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         82 QIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      +.+.+|++|+|.|.... .....+.|++.........+. ..........+|+.+..+...+...|.|.+++.+|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIV-SEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEE-CCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence            35789999999999865 346679999977654333222 2222223346788887666678899999999999999999


Q ss_pred             EEEEE
Q psy16652        161 CEVII  165 (384)
Q Consensus       161 C~~~~  165 (384)
                      |.+..
T Consensus        81 C~~~~   85 (98)
T cd05716          81 CGVGD   85 (98)
T ss_pred             EEccc
Confidence            99864

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.07  E-value=8.7e-10  Score=76.63  Aligned_cols=98  Identities=14%  Similarity=0.056  Sum_probs=61.6

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccC-ceee----eCCceEEeeCCCCceEEEEEee
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG-SLII----HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++++.+..+.+|++|.|.|.........+.|+|.........+...... ....    ..+|..+..     +.+|.|.+
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-----ngSL~I~~   76 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-----NGSLLIQN   76 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-----CCcEEEec
Confidence            3445566678999999999876555668999996443222222211111 1111    234544443     33799999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      ++.+|+|.|+|.+.+.........+.|.
T Consensus        77 v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          77 VTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            9999999999999865544444444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.07  E-value=2.2e-09  Score=72.78  Aligned_cols=76  Identities=29%  Similarity=0.470  Sum_probs=58.3

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-----EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-----YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.......     .....|.|.++..+|+|.|.|.+.|..|.. +.++.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence            446789999999999998989999999887655332221     112468999999999999999999988764 55555


Q ss_pred             EE
Q psy16652        268 VE  269 (384)
Q Consensus       268 l~  269 (384)
                      |.
T Consensus        83 l~   84 (85)
T cd05729          83 VD   84 (85)
T ss_pred             Ee
Confidence            44

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.06  E-value=8.6e-10  Score=74.94  Aligned_cols=76  Identities=11%  Similarity=0.108  Sum_probs=54.3

Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEecCC--------------CceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN--------------QHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .+.+|+.++|.|.+.+.+.+.+.|+++++....+              .++....  .........|+|.+++.+|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEEE
Confidence            3568999999999999899999999876432211              1111111  01112345699999999999999


Q ss_pred             EEEEEeCCcceE
Q psy16652        350 ACKAANKYGSAQ  361 (384)
Q Consensus       350 ~C~a~n~~g~~~  361 (384)
                      .|.+.|..+..+
T Consensus        81 ~C~v~~~~~~~~   92 (94)
T cd07690          81 ICEVEDKKEEVE   92 (94)
T ss_pred             EEEECCccceEE
Confidence            999999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.05  E-value=3.7e-09  Score=74.77  Aligned_cols=93  Identities=24%  Similarity=0.439  Sum_probs=58.9

Q ss_pred             ccCcEEEEEEeecC------CCccEEEEEeCCCCCCc-ccceeccCceee---eCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         86 IAQTADLKCSVQYA------DDYPVIWMKMDTAKKME-PLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        86 ~g~~v~l~C~~~~~------~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      .|++|+|.|.+...      ....+.|++........ .+.....+....   ...|+.+. ....+..+|.|.+++.+|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence            48999999998764      25689999985221112 222222221111   11222221 225577899999999999


Q ss_pred             CeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        156 AGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +|.|+|.+.+. .+.....+.|.|.
T Consensus        80 ~G~Y~C~v~~~-~~~~~~~v~L~V~  103 (106)
T cd05714          80 SGRYRCEVIDG-IEDEQDTVELEVR  103 (106)
T ss_pred             CEEEEEEEEcC-CCceEEEEEEEEE
Confidence            99999999854 3456777777775

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.04  E-value=4.4e-09  Score=71.53  Aligned_cols=79  Identities=18%  Similarity=0.279  Sum_probs=55.4

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCCCc--c----cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--A----LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      .....+|+++.|.|.. +.|.+.+.|++....  .    ..........+.|.|.++..+|+|.|+|.+.+.........
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~   83 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK   83 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence            3567899999999996 468889999984321  1    11223334556799999999999999999985433323445


Q ss_pred             EEEEEE
Q psy16652        266 IAVEVE  271 (384)
Q Consensus       266 ~~l~v~  271 (384)
                      +.|.|.
T Consensus        84 ~~l~v~   89 (91)
T cd05871          84 YTLHVI   89 (91)
T ss_pred             EEEEEe
Confidence            555553

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.04  E-value=1.2e-09  Score=72.00  Aligned_cols=61  Identities=18%  Similarity=0.440  Sum_probs=47.2

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCCcccccCc----eeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        201 VYLYCYANG-FPAPTISWRRDNSAALSTGG----SIY----RGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.|.|.+.+ .|.+.+.|++++..+.....    ...    ....|.|.++..+|+|.|+|.+.|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence            479999864 67789999999887753221    111    23579999999999999999999988865

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.04  E-value=3.1e-09  Score=73.48  Aligned_cols=83  Identities=12%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEe--------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI--------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      ....+.+|+.++|.|.+.+.+.+.+.|++.+..+        ..+.++....    .......|.|.+++.+|+|.|.|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN----FSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc----CCCCeeEEEEccCCcccCEEEEEE
Confidence            3456789999999999988888899998633221        1123333211    111345799999999999999999


Q ss_pred             EEeCCcceEEEEEEEE
Q psy16652        353 AANKYGSAQKEIELFD  368 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v  368 (384)
                      +.+... .+++..|.|
T Consensus        81 ~~~~~~-~~~~~~~~v   95 (95)
T cd05717          81 LYTMPV-QTAKATVTV   95 (95)
T ss_pred             EecCCC-ceEEEEEEC
Confidence            998753 455555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.04  E-value=1.4e-09  Score=68.84  Aligned_cols=63  Identities=38%  Similarity=0.683  Sum_probs=50.6

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      +|+++.|.|.+.+.+.+.+.|++++..+............|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            488999999988888889999998876652222233456899999999999999999988643

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.03  E-value=6.3e-09  Score=71.10  Aligned_cols=79  Identities=25%  Similarity=0.403  Sum_probs=58.7

Q ss_pred             CCceEEeecCceEEEEEEecccCCC-eEEEEeCCCccccc--CceeE--------eccEEEEcCCCCCC-CeEEEEEEEe
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALST--GGSIY--------RGNILKIPNITKTD-RGTYYCVAQN  256 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~--~~~~~--------~~~~l~i~~~~~~d-~G~Y~C~~~~  256 (384)
                      +.....+.+|+.+.|.|.+.+.|+| .+.|...+..+...  .+...        ..+.|.|.++...| .|.|.|.|.|
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N   86 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN   86 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence            3566788999999999999887877 67888776655432  12221        23589999998766 7999999999


Q ss_pred             CCCCceeeEEEE
Q psy16652        257 GVGRGMKRNIAV  268 (384)
Q Consensus       257 ~~~~~~~~~~~l  268 (384)
                      ..|.. ...+.|
T Consensus        87 ~~G~d-~~~i~L   97 (98)
T cd05898          87 SFGSG-TAIIQL   97 (98)
T ss_pred             CCccc-eEEEEe
Confidence            99986 444443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.02  E-value=2e-09  Score=72.86  Aligned_cols=71  Identities=24%  Similarity=0.472  Sum_probs=55.6

Q ss_pred             CceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc--ccCce-eE-eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL--STGGS-IY-RGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~-~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      .....+.+|+.+.|.|.. .+.|.+.+.|++++....  ...+. .. .++.|.|.+++.+|+|.|+|.|+|....
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            445668899999999986 778999999999986532  11222 22 3579999999999999999999996544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.01  E-value=3.1e-09  Score=71.22  Aligned_cols=75  Identities=20%  Similarity=0.418  Sum_probs=50.7

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccC-ccccceEEEeecCCCCCeEEEEEEEeCCcce--EEEEEE
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIERRQFGQYACKAANKYGSA--QKEIEL  366 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l  366 (384)
                      +.|.|.+.| +|.+.+.|+++|+.+.... ........+. ....+.|.+.....+|.|.|+|.|.|.....  +++++|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCce-eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 6888999999999885432 1111111111 1223567888777888999999999986544  444444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.01  E-value=5.4e-09  Score=73.11  Aligned_cols=89  Identities=22%  Similarity=0.343  Sum_probs=57.0

Q ss_pred             cCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCcee------eeCCceEEeeC-CCCceEEEEEeecCCCCC
Q psy16652         87 AQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLI------IHDSRFQLTTD-PETSTYILSIKEIQETDA  156 (384)
Q Consensus        87 g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~  156 (384)
                      |++|+|.|.+.+.   ....+.|++....   ..+.+...+...      ...+|+.+..+ ...+..+|.|.+++.+|+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~---~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   77 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFS---PAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDE   77 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCc---eeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhC
Confidence            7899999998643   2347999996532   122222221111      12346665432 234678999999999999


Q ss_pred             eeEEEEEEEccCcceeeeEEEEE
Q psy16652        157 GIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       157 G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      |.|+|.+.+..+ .....+.|.|
T Consensus        78 G~Y~C~v~~~~~-~~~~~i~l~v   99 (100)
T cd05713          78 GLYTCFFQSDGF-YEEATVELKV   99 (100)
T ss_pred             EEEEEEEecCCc-EEEEEEEEEE
Confidence            999999986443 3566666655

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.99  E-value=4.3e-09  Score=75.93  Aligned_cols=87  Identities=22%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             CcceeeeccCcEEEEEEeecCC------CccEEEEEeCCCCCCcccceeccC---ceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD------DYPVIWMKMDTAKKMEPLPISMSG---SLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      |+.+.+.+|++|+|.|......      ...+.|++.........+......   ......+|+.+..+...+.++|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            5566789999999999875322      346999997754321122221111   1122345888766667788999999


Q ss_pred             ecCCCCCeeEEEEEEE
Q psy16652        150 EIQETDAGIYKCEVII  165 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~  165 (384)
                      +++.+|+|.|.|.+..
T Consensus        86 ~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          86 DAQPEDSGKYFFRVEL  101 (119)
T ss_pred             cCChhhCeEEEEEEEc
Confidence            9999999999999864

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.99  E-value=2.4e-09  Score=68.06  Aligned_cols=63  Identities=29%  Similarity=0.423  Sum_probs=43.8

Q ss_pred             cCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         87 AQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        87 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      |++++|.|.+ ...+...+.|++++......              ...............|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--------------STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--------------EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc--------------ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 56678899999988763211              111111111111224999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.99  E-value=1.2e-09  Score=69.49  Aligned_cols=63  Identities=22%  Similarity=0.462  Sum_probs=45.1

Q ss_pred             CCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       288 g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |+.++|.|.+ .+.+.+.+.|++++.............   ........|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 777788999999987654333222211   00001113999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.99  E-value=1.2e-09  Score=73.81  Aligned_cols=71  Identities=17%  Similarity=0.286  Sum_probs=56.3

Q ss_pred             CCcccccCCcEEEEEE-EeccCCCeEEEEECCEE-ecCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEEEEEeCC
Q psy16652        281 PRQGQALQYDAILECH-VEAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKY  357 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~  357 (384)
                      ....+.+|+.+.|.|. ..|+|.|.+.|+.++.. +..+.|....        .++.|.|.+++.+|.| .|.|.|+|..
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEccc
Confidence            3466789999999997 59999999999987654 3334444332        3589999999999999 7999999986


Q ss_pred             cc
Q psy16652        358 GS  359 (384)
Q Consensus       358 g~  359 (384)
                      ..
T Consensus        83 ~~   84 (95)
T cd05845          83 LR   84 (95)
T ss_pred             cc
Confidence            43

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.99  E-value=9e-09  Score=72.51  Aligned_cols=93  Identities=23%  Similarity=0.320  Sum_probs=58.9

Q ss_pred             ccCcEEEEEEeecCC------------CccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeC-CCCceEEEEEe
Q psy16652         86 IAQTADLKCSVQYAD------------DYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTD-PETSTYILSIK  149 (384)
Q Consensus        86 ~g~~v~l~C~~~~~~------------~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~L~i~  149 (384)
                      .|++|+|.|.+....            ...+.|++...... ..+.....+...   ...+|+.+... ...+..+|+|.
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~-~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~   79 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKE-SVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEIT   79 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCc-cEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEe
Confidence            489999999986532            35899999753221 122222222111   22346666542 24467899999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +++.+|+|.|+|.+.. .....+..+.|.|.
T Consensus        80 nl~~sDsG~Y~C~V~~-g~~~~~~~v~l~v~  109 (112)
T cd05900          80 ELRSNDSGTYRCEVMH-GIEDNYDTVEVQVK  109 (112)
T ss_pred             ecccccCEEEEEEEec-CCCCceeEEEEEEE
Confidence            9999999999999973 22445555666554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.99  E-value=2.3e-09  Score=72.67  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             ccccCCcEEEEEEE-ec----cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        284 GQALQYDAILECHV-EA----YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       284 ~~~~g~~~~l~C~~-~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .+.+|....|.|.- .+    .+.+++.|++|+.++..........      ...+.|.|.+++.+|+|.|+|.|.+..|
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~------~~~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL------KGSTYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec------CCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            35677889999973 33    4667999999999886544221110      0245699999999999999999999976


Q ss_pred             ceE
Q psy16652        359 SAQ  361 (384)
Q Consensus       359 ~~~  361 (384)
                      ...
T Consensus        80 g~~   82 (95)
T cd05897          80 GKK   82 (95)
T ss_pred             CEE
Confidence            553

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.99  E-value=7.9e-09  Score=73.14  Aligned_cols=93  Identities=20%  Similarity=0.365  Sum_probs=60.6

Q ss_pred             cCcEEEEEEeecCC----------CccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeC-CCCceEEEEEeecC
Q psy16652         87 AQTADLKCSVQYAD----------DYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTD-PETSTYILSIKEIQ  152 (384)
Q Consensus        87 g~~v~l~C~~~~~~----------~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~L~i~~~~  152 (384)
                      |++|+|+|.+...+          ...+.|++...... ..+.....+...   ...+|+.+..+ ...+..+|.|.+++
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~-~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKE-VTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCc-EEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            89999999996543          36799999743321 222222222211   12346666432 24567889999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      .+|+|.|.|.+... .......+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~-~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHG-IEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeC-CCcceEEEEEEEEE
Confidence            99999999999753 34566777777653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.99  E-value=6e-09  Score=72.24  Aligned_cols=92  Identities=18%  Similarity=0.236  Sum_probs=60.6

Q ss_pred             cCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceecc-Ccee---eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         87 AQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMS-GSLI---IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        87 g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      |++|+|.|...... ...|.|++..... ...+..... .+..   ...+|+.+. .......+|.|.+++.+|+|.|+|
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~-~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSS-PENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCC-ceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEE
Confidence            78999999875433 3479999864331 122222211 1111   122344443 334567889999999999999999


Q ss_pred             EEEEccCcceeeeEEEEEe
Q psy16652        162 EVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~l~v~  180 (384)
                      .+.....+..+..+.|.|.
T Consensus        79 ~~~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          79 IFNTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             EEEeCCCCCeeeEEEEEEC
Confidence            9987777888888888773

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.99  E-value=5.7e-09  Score=72.78  Aligned_cols=90  Identities=20%  Similarity=0.316  Sum_probs=58.5

Q ss_pred             CcEEEEEEeecCC---CccEEEEEeCCCCCCcccceecc--Cce--eeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         88 QTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMS--GSL--IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        88 ~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      ++|+|.|.+....   ...|.|+|..... ...+.+...  +..  .....|..+... ..+..+|.|.+++.+|+|.|+
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~-~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGS-KQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCC-CEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEE
Confidence            5799999987643   4579999987542 121111111  111  112344444432 226779999999999999999


Q ss_pred             EEEEEccCcceeeeEEEEE
Q psy16652        161 CEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       161 C~~~~~~~~~~~~~~~l~v  179 (384)
                      |.+.....+.....+.|.|
T Consensus        79 C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          79 CEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEeCCCCcEEEEEEEEe
Confidence            9998666677777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.97  E-value=1.5e-08  Score=69.71  Aligned_cols=90  Identities=19%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             cEEEEEEeecC-C---CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         89 TADLKCSVQYA-D---DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        89 ~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      .|+|.|.+... +   ..+|.|.+..... ...+.+......    ....+|..+. +...+..+|.|.+++.+|+|.|+
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~-~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~   79 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGS-KQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYI   79 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCC-ceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEE
Confidence            68999999742 2   2369999864322 222333322111    1244677766 33456788999999999999999


Q ss_pred             EEEEEccCcceeeeEEEEEe
Q psy16652        161 CEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       161 C~~~~~~~~~~~~~~~l~v~  180 (384)
                      |.+.+...+..+..+.|.|.
T Consensus        80 C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          80 CEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             EEEEeCCCCCeEEEEEEEEC
Confidence            99998667778888888773

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.97  E-value=4.4e-09  Score=70.35  Aligned_cols=72  Identities=38%  Similarity=0.664  Sum_probs=56.1

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ..+.+|+.+.|.|.+.+.|...+.|++++..+...      ...+.+..+..+|+|.|+|.+.+..+...+..+.|.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            45789999999999998888899999987555422      2227788999999999999999966554556666554

...

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.97  E-value=1.2e-08  Score=69.39  Aligned_cols=90  Identities=16%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             CcEEEEEEeecC-CCccEEEEEeCCCCCCcccceecc--Cce--eeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         88 QTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMS--GSL--IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        88 ~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ++|+|+|..... ...+|.|.|...... ..+.....  +..  ....+|..+. .......+|.|.+++.+|+|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~-~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~   78 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGS-VTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICK   78 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCc-EEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEE
Confidence            478999998653 456899998654321 11211111  111  1234566665 3355678999999999999999999


Q ss_pred             EEEccCcceeeeEEEEE
Q psy16652        163 VIISLNNKVSAEVELIV  179 (384)
Q Consensus       163 ~~~~~~~~~~~~~~l~v  179 (384)
                      +.+...|..+..+.|.|
T Consensus        79 v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          79 AVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEeCCCCCeeEEEEEEE
Confidence            99888888888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.96  E-value=1.1e-08  Score=72.49  Aligned_cols=93  Identities=24%  Similarity=0.313  Sum_probs=59.9

Q ss_pred             ccCcEEEEEEeecCC------CccEEEEEeCCCCCCccc-ceeccCce---eeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         86 IAQTADLKCSVQYAD------DYPVIWMKMDTAKKMEPL-PISMSGSL---IIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        86 ~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      .|++|+|.|.+...+      ...|.|++.......... .+......   ....+|+.+... ..+..+|.|.+++.+|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence            489999999986542      457999998643222212 22211111   112356666432 3456789999999999


Q ss_pred             CeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        156 AGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +|.|+|.+.+. .+.....+.|.|.
T Consensus        80 sG~Y~C~v~~~-~~~~~~~~~l~v~  103 (106)
T cd05877          80 YGRYRCEVIDG-LEDESVVVALRLR  103 (106)
T ss_pred             CEEEEEEEEec-ccceEEEEEEEEE
Confidence            99999999743 4456677777664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.95  E-value=7.7e-09  Score=68.45  Aligned_cols=75  Identities=20%  Similarity=0.362  Sum_probs=57.1

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ...+..|+++.|.|...+. .+.+.|+++|..+..+.++...         ..-|.|..++.+|+|.|.|.+. +.|-..
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~   73 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE-EEGFQQ   73 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe-cCCCeE
Confidence            3457889999999999884 7799999999998766554432         3448899999999999999987 445444


Q ss_pred             EEEEEE
Q psy16652        362 KEIELF  367 (384)
Q Consensus       362 ~~~~l~  367 (384)
                      ....+.
T Consensus        74 ~~~~y~   79 (85)
T cd05872          74 LVASYS   79 (85)
T ss_pred             EEEEEE
Confidence            443333

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.93  E-value=1.6e-08  Score=71.47  Aligned_cols=82  Identities=20%  Similarity=0.419  Sum_probs=55.1

Q ss_pred             eeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCc---ccceeccCcee-----eeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         83 IKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKME---PLPISMSGSLI-----IHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+.+|++|+|.|..... ....+.||+......+.   .+.........     ...+++.+..........|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            47899999999998653 34579999987652211   11111111111     12357766554456678899999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999875

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA03376 BARF1; Provisional

Probab=98.93  E-value=8e-08  Score=71.46  Aligned_cols=119  Identities=18%  Similarity=0.276  Sum_probs=75.1

Q ss_pred             eEEeecCceEEEEEEecc---cCCCeEEEEeCCC----cccccC------------ce-e----EeccEEEEcCCCCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANG---FPAPTISWRRDNS----AALSTG------------GS-I----YRGNILKIPNITKTDR  247 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~----~~~~~~------------~~-~----~~~~~l~i~~~~~~d~  247 (384)
                      .+....|+.+.|+|..+.   .+...|.|+|.+.    ......            +. .    ..+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            455678999999998652   2344799999532    111000            00 0    0233799999999999


Q ss_pred             eEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC
Q psy16652        248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG  311 (384)
Q Consensus       248 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~  311 (384)
                      |+|+|.+....... .+.-.|.+..+-.+++.......+..+...+.|.+-|+|.|.++|..+.
T Consensus       100 GtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        100 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             ceEEEEEEcCCCce-eeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence            99999999755333 2223333333333333332223333567789999888999999998764

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.92  E-value=2.1e-08  Score=70.95  Aligned_cols=85  Identities=22%  Similarity=0.308  Sum_probs=59.1

Q ss_pred             cCCcEEEEEEEeccC------CCeEEEEECC-----E-Ee--cCCCc------eeeeeeeccCccccceEEEeecCCCCC
Q psy16652        287 LQYDAILECHVEAYP------PPAIVWIKDG-----V-QI--MNNQH------YSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p------~~~v~W~~~~-----~-~~--~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      .|+.++|.|.....+      ...+.|++..     . .+  ..+..      +..............+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378999999987653      4489999862     1 11  11111      111111111123568899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      |.|.|.+.+..+..+..+.|.|.+.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~~  105 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRGV  105 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEEE
Confidence            9999999999888899999999864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>smart00410 IG_like Immunoglobulin like

Probab=98.90  E-value=3.5e-08  Score=66.79  Aligned_cols=82  Identities=23%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             ceeeeccCcEEEEEEeecCCCccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ...+..|+++.|.|.+.+.+...+.|+++ +...              ....++.....  .....|.|.+++..|+|.|
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v--------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y   66 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL--------------AESGRFSVSRS--GSNSTLTISNVTPEDSGTY   66 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc--------------CCCCcEEEEEc--CCeeEEEEEeeccccCeEE
Confidence            45578999999999998877889999997 3221              12344444442  2256899999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEE
Q psy16652        160 KCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +|.+.+..+. ....+.|.|
T Consensus        67 ~C~v~~~~~~-~~~~~~l~V   85 (86)
T smart00410       67 TCAATNSSGS-ASSTTTLTV   85 (86)
T ss_pred             EEEEEcCCCe-EEEEEEEEE
Confidence            9999844433 333355554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.90  E-value=3.5e-08  Score=66.79  Aligned_cols=82  Identities=23%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             ceeeeccCcEEEEEEeecCCCccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ...+..|+++.|.|.+.+.+...+.|+++ +...              ....++.....  .....|.|.+++..|+|.|
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v--------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y   66 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL--------------AESGRFSVSRS--GSNSTLTISNVTPEDSGTY   66 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc--------------CCCCcEEEEEc--CCeeEEEEEeeccccCeEE
Confidence            45578999999999998877889999997 3221              12344444442  2256899999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEE
Q psy16652        160 KCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +|.+.+..+. ....+.|.|
T Consensus        67 ~C~v~~~~~~-~~~~~~l~V   85 (86)
T smart00409       67 TCAATNSSGS-ASSTTTLTV   85 (86)
T ss_pred             EEEEEcCCCe-EEEEEEEEE
Confidence            9999844433 333355554

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.90  E-value=8.8e-09  Score=69.62  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             CCCceEEeecCceEEEEEE-ecccCCCeEEEEeCCCcccccCcee--EeccEEEEcCCCCCCCe-EEEEEEEeCCC
Q psy16652        188 NSTRSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGSI--YRGNILKIPNITKTDRG-TYYCVAQNGVG  259 (384)
Q Consensus       188 ~~~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~  259 (384)
                      .....+.+.+|+.+.|.|. ..|+|.|.+.|+.++........+.  ..++.|.|.++..+|+| .|.|.|.+...
T Consensus         8 ~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845           8 EKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            3456678999999999997 5899999999998765544333332  23579999999999999 79999998653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.89  E-value=1.6e-08  Score=68.73  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             cccccCCcEEEEEEEe------cc-----CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        283 QGQALQYDAILECHVE------AY-----PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~------~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      ..+.+|+.+.|.|...      ++     ....+.|++++..+....+..+..  .........|.|.++..+|+|.|+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~--~Ri~~~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDG--VRMSKEEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccc--eeEEEeCCEEEEEeCChhhCeEEEE
Confidence            4567899999999961      11     233799999975554433211100  0011246789999999999999999


Q ss_pred             EEEeCCcceEEEEEEEE
Q psy16652        352 KAANKYGSAQKEIELFD  368 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v  368 (384)
                      .+.|.....+.++.|.|
T Consensus        88 ~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          88 VLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EECCCCcceEEEEEEEC
Confidence            99999888888877764

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.88  E-value=3.5e-08  Score=73.84  Aligned_cols=98  Identities=15%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeee--CCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIH--DSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      .+.|.+|++|+|.|... +....++.|+|..+.    ...+...+.....  .+|+.+.. .......|.|.+++.+|+|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~----IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeG   98 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKT----IAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCC----EEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCe
Confidence            35579999999999985 455778999996531    1222222222221  23555322 2445678999999999999


Q ss_pred             eEEEEEEEccCc-ceeeeEEEEEecCC
Q psy16652        158 IYKCEVIISLNN-KVSAEVELIVRRPP  183 (384)
Q Consensus       158 ~Y~C~~~~~~~~-~~~~~~~l~v~~~~  183 (384)
                      .|+|.+..-..+ ..+....|.|..+.
T Consensus        99 cY~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987         99 CYTCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEEEEecCCCCCceeEEEEEEEchh
Confidence            999999765555 78888899988654

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.88  E-value=3.5e-08  Score=70.78  Aligned_cols=86  Identities=23%  Similarity=0.357  Sum_probs=59.3

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      |....+.+|++|+|.|......  ...+.||+......+..+..... ...    ....+|+....+.......|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            5566789999999999876432  45799999876544333322211 111    1123677777654456678999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|+|.|.|.+.
T Consensus        84 ~~~Dsa~YyCa~~   96 (117)
T cd04981          84 TPEDTAVYYCARG   96 (117)
T ss_pred             CHHHCEEEEEEEE
Confidence            9999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.87  E-value=2.5e-08  Score=67.76  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             ceEEeecCceEEEEEEe-c-----c-----cCCCeEEEEeCCCcccccC-------ceeEeccEEEEcCCCCCCCeEEEE
Q psy16652        191 RSVIVSEGQTVYLYCYA-N-----G-----FPAPTISWRRDNSAALSTG-------GSIYRGNILKIPNITKTDRGTYYC  252 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~-~-----~-----~~~~~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C  252 (384)
                      ....+.+|+++.|.|.. .     +     .....+.|+|++.......       +....+..|.|.++..+|+|.|+|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence            34568899999999986 1     1     1234799999974443322       344567899999999999999999


Q ss_pred             EEEeCCCC
Q psy16652        253 VAQNGVGR  260 (384)
Q Consensus       253 ~~~~~~~~  260 (384)
                      .+.|....
T Consensus        88 ~~rN~t~C   95 (104)
T cd05896          88 VLRNSTYC   95 (104)
T ss_pred             EECCCCcc
Confidence            99987644

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.87  E-value=5.7e-09  Score=68.77  Aligned_cols=74  Identities=28%  Similarity=0.527  Sum_probs=48.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccC-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYP-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +.......       .........+.|.|..+..+|.|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~~~g~y~C   71 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-------NSRGSSSSNSTLTISNVTRSDNGTYTC   71 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-------EEEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-------eeeeccceeeEEEEccCCHHhCcEEEE
Confidence            35555555444333333 99999999877 7799999 11111111       111111246789999999999999999


Q ss_pred             EEEe
Q psy16652        352 KAAN  355 (384)
Q Consensus       352 ~a~n  355 (384)
                      .|+|
T Consensus        72 ~a~N   75 (75)
T PF13927_consen   72 IASN   75 (75)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9987

...

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.87  E-value=5.5e-08  Score=65.94  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=62.9

Q ss_pred             CceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCc--eeE-------eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGG--SIY-------RGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .....+.+|+.+.|.|.+..+|+|+ +.|.+++..+.....  ...       ..+.|.+.++..+++|.|+|.|.|...
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            4556799999999999999999997 999998765433222  111       235899999999999999999999877


Q ss_pred             CceeeEEEEEEE
Q psy16652        260 RGMKRNIAVEVE  271 (384)
Q Consensus       260 ~~~~~~~~l~v~  271 (384)
                      .. +.++.|.|+
T Consensus        90 ~~-s~tF~l~v~  100 (101)
T cd05860          90 SA-SVTFNVYVN  100 (101)
T ss_pred             eE-EEEEEEEEe
Confidence            65 666666653

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.87  E-value=4.8e-08  Score=66.57  Aligned_cols=89  Identities=20%  Similarity=0.347  Sum_probs=58.7

Q ss_pred             CcEEEEEEeecC-CCccEEEEEeCCCCCCcccceecc--Ccee--eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         88 QTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMS--GSLI--IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        88 ~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ++++|.|..... ...+|+|.|...... +.+.....  +...  ...+|..+... .....+|.|.+++.+|+|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~-~~iavy~~~~g~~~~~~y~~Rv~f~~~-~~~d~sI~i~nvt~~D~G~Y~C~   78 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHK-ENIAVYHPIYGMHIEDKYRGRVYFLNS-TREDMSLSFNNATEEDVGLYCCS   78 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCC-ceEEEEECCCCCEECccccCeEEEecC-CCCccEEEEcCCCcccCEEEEEE
Confidence            478999998643 466899999764321 12222211  2111  12356665543 23567899999999999999999


Q ss_pred             EEEccCcceeeeEEEE
Q psy16652        163 VIISLNNKVSAEVELI  178 (384)
Q Consensus       163 ~~~~~~~~~~~~~~l~  178 (384)
                      +.+...+..++.+.|.
T Consensus        79 ~~t~P~g~~~~~i~~~   94 (96)
T cd05889          79 LVTYPQGSWEKVIEVV   94 (96)
T ss_pred             EEeCCCCCeEEEEEEE
Confidence            9877777777776653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.87  E-value=1.3e-08  Score=68.99  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=51.6

Q ss_pred             EEeecCceEEEEEEe-cc----cCCCeEEEEeCCCcccccCceeE---eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        193 VIVSEGQTVYLYCYA-NG----FPAPTISWRRDNSAALSTGGSIY---RGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~-~~----~~~~~v~W~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ..+.+|.+..|.|.- .+    .+.+.+.|+|++..+........   ....|.|.++..+|+|.|+|++.+..+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            346789999999973 33    35568999999987654432221   2458999999999999999999997544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.85  E-value=4.8e-08  Score=66.37  Aligned_cols=72  Identities=14%  Similarity=0.279  Sum_probs=53.2

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEe--------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI--------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      .+..+.+|++++|.|.+.+.....+.|++.+..+        ..++|+......    ....+|.|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEEE
Confidence            4567889999999999988766778888765332        244555544211    1345699999999999999999


Q ss_pred             EEeC
Q psy16652        353 AANK  356 (384)
Q Consensus       353 a~n~  356 (384)
                      +...
T Consensus        81 v~t~   84 (95)
T cd05881          81 LYTD   84 (95)
T ss_pred             EEcc
Confidence            9753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.85  E-value=2.5e-08  Score=68.09  Aligned_cols=87  Identities=14%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.+...+ ..+|.+|++|+|.|... .+...+.|++++......                   ..........+.|.++
T Consensus         2 kP~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------------------~~~~~~~~~~f~i~~v   60 (91)
T cd05751           2 KPSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------------------KPPEPQNKAKFFIPSM   60 (91)
T ss_pred             CCEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------------------ccCCCceeEEEEccCC
Confidence            45666655 35788999999999875 456678899877541100                   0011233457999999


Q ss_pred             CCCCCeeEEEEEEEccC--cceeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLN--NKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v  179 (384)
                      +.+|+|.|+|++.+...  ...+..++|.|
T Consensus        61 ~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          61 KREHAGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             ChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence            99999999999975421  12344455554

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.85  E-value=5.8e-08  Score=68.11  Aligned_cols=93  Identities=22%  Similarity=0.395  Sum_probs=60.5

Q ss_pred             cCcEEEEEEeecCC-------CccEEEEEeCC--CCCCcccceeccCce---eeeCCceEEeeCC-CCceEEEEEeecCC
Q psy16652         87 AQTADLKCSVQYAD-------DYPVIWMKMDT--AKKMEPLPISMSGSL---IIHDSRFQLTTDP-ETSTYILSIKEIQE  153 (384)
Q Consensus        87 g~~v~l~C~~~~~~-------~~~v~W~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~L~i~~~~~  153 (384)
                      |++|+|+|.+...|       .+.|.|.+...  ......+....++..   ....+|..+..+. ..+..+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999976322       46899999742  111112222222221   1244566666532 35678999999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +|+|.|+|.+.. .....+..+.|.|.
T Consensus        82 ~D~G~Y~C~v~~-g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVL-GINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEE-CCcccEEEEEEEEE
Confidence            999999999975 33456667777765

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.84  E-value=3e-08  Score=64.63  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=47.8

Q ss_pred             EEEEEEe-cccCCCeEEEEeCCCcccccCc------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        201 VYLYCYA-NGFPAPTISWRRDNSAALSTGG------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       201 ~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ++|+|.. .+.|++.++||+++..+.....      .....++|.+...+.+|++.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            6899998 5588899999999987754321      12234579999999999999999999977654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.84  E-value=2.7e-08  Score=67.01  Aligned_cols=73  Identities=25%  Similarity=0.338  Sum_probs=51.1

Q ss_pred             CceEEEEEEecccC--CCeEEEEeCCCcccccC--c--------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        198 GQTVYLYCYANGFP--APTISWRRDNSAALSTG--G--------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       198 g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~--~--------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      |+++.|.|.+.+.+  ...+.|...++......  .        .....+.|.|.+++.+|+|.|+|.+.|..+.. ...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence            78999999997644  44789988775331110  0        01234689999999999999999999976654 444


Q ss_pred             EEEEEE
Q psy16652        266 IAVEVE  271 (384)
Q Consensus       266 ~~l~v~  271 (384)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            555543

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.83  E-value=3.1e-08  Score=69.48  Aligned_cols=80  Identities=20%  Similarity=0.414  Sum_probs=55.1

Q ss_pred             eeeccCcEEEEEEeecCCCccEEEEEeCCC--CCCcccceeccC-cee-----eeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         83 IKDIAQTADLKCSVQYADDYPVIWMKMDTA--KKMEPLPISMSG-SLI-----IHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      .+.+|++|+|.|.........+.|++....  .....+...... ...     ....|+....  ......|.|.+++.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~s   79 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKE   79 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHH
Confidence            368999999999986555567999998865  333333322221 111     1235666644  447788999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|.+.
T Consensus        80 DsgtY~Ca~~   89 (104)
T cd05720          80 NEGYYFCSVA   89 (104)
T ss_pred             HCEEEEEEEc
Confidence            9999999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.83  E-value=6.6e-08  Score=68.38  Aligned_cols=81  Identities=16%  Similarity=0.248  Sum_probs=57.6

Q ss_pred             cCCcEEEEEEEeccC------CCeEEEEECCEE-------e-cCC----------CceeeeeeeccCccccceEEEeecC
Q psy16652        287 LQYDAILECHVEAYP------PPAIVWIKDGVQ-------I-MNN----------QHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p------~~~v~W~~~~~~-------~-~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .|+.++|.|.....|      ...+.|++....       + ...          .++.+.    .......+|.|.+++
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~v~   76 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR----RAHDLDASLVITDLR   76 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec----CCCCCcEEEEEccCC
Confidence            378999999987653      346999985411       0 100          111110    111235679999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        343 RRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .+|+|.|.|.+.+..+..+..+.|.|.+.
T Consensus        77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~~  105 (106)
T cd05877          77 LEDYGRYRCEVIDGLEDESVVVALRLRGV  105 (106)
T ss_pred             hHHCEEEEEEEEecccceEEEEEEEEEEE
Confidence            99999999999999999999999999874

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.82  E-value=4.9e-08  Score=67.91  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             ecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEec--------CCCceee-e--eeeccCccccceEEEeecCCCCC
Q psy16652        278 INRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSV-S--HFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       278 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~-~--~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      +.+.+..+.+|+.+.|.|.........+.|++......        ....... .  ...+..-..+++|.|.+++.+|+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            34455667899999999976543444899999632110        0000000 0  00111112467899999999999


Q ss_pred             eEEEEEEEeCC-cceEEEEEEEE
Q psy16652        347 GQYACKAANKY-GSAQKEIELFD  368 (384)
Q Consensus       347 G~Y~C~a~n~~-g~~~~~~~l~v  368 (384)
                      |.|+|.+.+.. ...+..+.|.|
T Consensus        83 G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          83 GFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEEEEEEeCCccEEEEEEEEEC
Confidence            99999999987 56666677654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.81  E-value=1.3e-07  Score=66.63  Aligned_cols=83  Identities=16%  Similarity=0.278  Sum_probs=58.0

Q ss_pred             cCCcEEEEEEEeccC------------CCeEEEEECC--EE---e-cCCC----------ceeeeeeeccCccccceEEE
Q psy16652        287 LQYDAILECHVEAYP------------PPAIVWIKDG--VQ---I-MNNQ----------HYSVSHFATSDEFSDTSLRV  338 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p------------~~~v~W~~~~--~~---~-~~~~----------~~~~~~~~~~~~~~~~~l~i  338 (384)
                      .|++++|.|......            .+.|.|++-.  ..   + ....          |+.+.  .......+.+|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~--~~~~~~~~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLP--NYPAIPSDATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEec--ccCCCCCCcEEEE
Confidence            478999999986532            3589999842  11   1 0111          11111  1011235788999


Q ss_pred             eecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        339 ITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       339 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .+++.+|+|.|.|.+.+........+.|.|++.
T Consensus        79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~gv  111 (112)
T cd05900          79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKGI  111 (112)
T ss_pred             eecccccCEEEEEEEecCCCCceeEEEEEEEee
Confidence            999999999999999999889999999999875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.81  E-value=2.8e-08  Score=67.88  Aligned_cols=74  Identities=14%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+ ...+..|+.++|.|... .+...+.|+++|....... ..       .......+.|.+++.+|+|.|+|.
T Consensus         2 kP~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~-------~~~~~~~f~i~~v~~~~~G~Y~C~   71 (91)
T cd05751           2 KPSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PP-------EPQNKAKFFIPSMKREHAGRYRCY   71 (91)
T ss_pred             CCEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cC-------CCceeEEEEccCCChhHCEEEEEE
Confidence            45566544 34678999999999886 5677899999987543211 00       112356799999999999999999


Q ss_pred             EEeC
Q psy16652        353 AANK  356 (384)
Q Consensus       353 a~n~  356 (384)
                      +.|.
T Consensus        72 ~~~~   75 (91)
T cd05751          72 YRSG   75 (91)
T ss_pred             EECC
Confidence            9986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.80  E-value=5e-08  Score=64.59  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      ....+..|+++.|.|...+. .+.+.|++++..+............|.|..++.+|+|.|.|.+.-.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence            34678899999999998774 5699999999988765555556677999999999999999998743

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.79  E-value=2.4e-07  Score=65.05  Aligned_cols=93  Identities=22%  Similarity=0.406  Sum_probs=60.0

Q ss_pred             cCcEEEEEEeecCC-----------CccEEEEEeC-----CCCCCcccceeccCcee---eeCCceEEeeCC-CCceEEE
Q psy16652         87 AQTADLKCSVQYAD-----------DYPVIWMKMD-----TAKKMEPLPISMSGSLI---IHDSRFQLTTDP-ETSTYIL  146 (384)
Q Consensus        87 g~~v~l~C~~~~~~-----------~~~v~W~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~L  146 (384)
                      |++++|.|.+...|           ...|.|.+-.     +......+.+..++...   ...+|..+..+. ..+..+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78999999997432           3479999862     11112333333333222   233466665432 4567899


Q ss_pred             EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      .|.+++.+|+|.|+|.+... ....+..+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g-~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHG-IEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEEC-CcccEEEEEEEEE
Confidence            99999999999999999743 3456667777664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.76  E-value=4.8e-06  Score=71.27  Aligned_cols=211  Identities=16%  Similarity=0.233  Sum_probs=123.5

Q ss_pred             CceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc--ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec
Q psy16652        131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN  208 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  208 (384)
                      .+|.+-.....+...|.|.+++..++|.|+.++.+...+  .....+.|.+..+|.+.....   -+.+|+...-.|.+.
T Consensus       276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA  352 (566)
T PHA03269        276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVN  352 (566)
T ss_pred             ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEee
Confidence            455555444556678999999999999999887643322  345667788888886664433   367899999999996


Q ss_pred             c-cCCC--eEEEEeCCCcccccC----------ceeEeccEEEEcCCCCCC--CeEEEEEEEeCCCCce----eeEEEEE
Q psy16652        209 G-FPAP--TISWRRDNSAALSTG----------GSIYRGNILKIPNITKTD--RGTYYCVAQNGVGRGM----KRNIAVE  269 (384)
Q Consensus       209 ~-~~~~--~v~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~~----~~~~~l~  269 (384)
                      . +|..  .+.|++++..+....          +.+...++|++......|  --..+|.+........    +....-.
T Consensus       353 ~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~  432 (566)
T PHA03269        353 KYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPD  432 (566)
T ss_pred             eecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCc
Confidence            6 4433  699999987776311          112223455543322112  3457999997543321    2334445


Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCceeeeeeeccCccccceEEEee---cCCC
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT---IERR  344 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~  344 (384)
                      |..+|.+++.      .+++  ...|.+.--|.  ..+.|..++.............    ....-+-..|..   ++..
T Consensus       433 VY~~PtISm~------FedG--~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~----C~ehPGLVNLRS~~pLS~~  500 (566)
T PHA03269        433 VYPFPNVSIE------IIDG--HIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGV----CDNNKRFVNLQSSCDTSEL  500 (566)
T ss_pred             cccCCeEEEE------EeCC--EEEEecccccCCCceEEEEecCCCCCCccceeecc----CCCCCCceeeccccccccc
Confidence            5556665542      1222  34588776655  3899998876643332211111    111122233444   3344


Q ss_pred             C-CeEEEEEEEeC
Q psy16652        345 Q-FGQYACKAANK  356 (384)
Q Consensus       345 d-~G~Y~C~a~n~  356 (384)
                      | .-+|+|.+...
T Consensus       501 dgpveYTCrL~GY  513 (566)
T PHA03269        501 DGPITYSCHLDGY  513 (566)
T ss_pred             CCceeEEEEEeec
Confidence            3 24799998764

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.75  E-value=9.5e-08  Score=65.52  Aligned_cols=75  Identities=15%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.+.. +...+|.+|++|+|.|.... ....+.|+|.+.......  .         .     ..........+.|.+++
T Consensus         2 P~l~a-~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~--~---------~-----~~~~~~~~a~f~I~~~~   63 (94)
T cd05711           2 PFLSA-HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH--L---------Y-----EKHHGGFQASFPLGPVT   63 (94)
T ss_pred             CEEEe-cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee--c---------c-----cccCCeEEEEEEecCCC
Confidence            44544 34566789999999998754 455799999876521100  0         0     00002223468999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      .+|+|.|+|....
T Consensus        64 ~~~~G~Y~C~~~~   76 (94)
T cd05711          64 PAHAGTYRCYGSY   76 (94)
T ss_pred             cccCEEEEEEEEC
Confidence            9999999999763

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.75  E-value=2.3e-07  Score=65.72  Aligned_cols=83  Identities=20%  Similarity=0.368  Sum_probs=57.6

Q ss_pred             cCCcEEEEEEEeccC----------CCeEEEEECC--EEe----cCCC----------ceeeeeeeccCccccceEEEee
Q psy16652        287 LQYDAILECHVEAYP----------PPAIVWIKDG--VQI----MNNQ----------HYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p----------~~~v~W~~~~--~~~----~~~~----------~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .|+.++|.|.....+          ...+.|++..  ...    ..+.          |+.+.  .........+|+|.+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~--~~~~~~~~asL~I~~   78 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLP--NYPENRGDASLEISR   78 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEec--cCCCCCCcEEEEECC
Confidence            478999999997643          2469999852  111    0011          11110  001122457799999


Q ss_pred             cCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        341 IERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      ++.+|+|.|.|.+.......++.+.|.|.+.
T Consensus        79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g~  109 (110)
T cd05878          79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTGV  109 (110)
T ss_pred             CChhhCEEEEEEEEeCCCcceEEEEEEEEEE
Confidence            9999999999999998889999999999874

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.72  E-value=4.8e-08  Score=67.63  Aligned_cols=74  Identities=16%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             ccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        286 ALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ..|+.+.|.|.+.|+ |. +.+.|+++|..+..... ........+.....+.|.+......|.|.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999997 53 58999999999875543 2222223333333455667766677999999999998764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.71  E-value=2.1e-07  Score=65.04  Aligned_cols=79  Identities=16%  Similarity=0.244  Sum_probs=52.2

Q ss_pred             CCcEEEEEEEeccCC---CeEEEEECCE--Ee---cCC------------CceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652        288 QYDAILECHVEAYPP---PAIVWIKDGV--QI---MNN------------QHYSVSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       288 g~~~~l~C~~~~~p~---~~v~W~~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      |++++|.|.......   ..+.|++...  .+   ...            .|..+.  .........+|+|.+++.+|+|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~I~~v~~~D~G   78 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELL--KDAIAEGSVALRIHNVRASDEG   78 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEee--cccccCCcEEEEEEcCChhhCE
Confidence            678999999863222   2588887541  11   000            111110  0111123568999999999999


Q ss_pred             EEEEEEEeCCcceEEEEEEEE
Q psy16652        348 QYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       348 ~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      .|.|.+.|..+..++.+.|.|
T Consensus        79 ~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          79 LYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEecCCcEEEEEEEEEE
Confidence            999999999888888888887

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.68  E-value=3.5e-05  Score=65.30  Aligned_cols=163  Identities=15%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEe
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRR  219 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~  219 (384)
                      ..|.|..++...+|.|+....+.... .....+.|..+.+|.+......   +.+|+...-.|.+.. +|..  .+.|++
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P---vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA---VLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc---cccCCCceEEEEeeeecCCCceEEEEEe
Confidence            35999999999999999998654433 3345577788888887654333   678999999999966 4443  699999


Q ss_pred             CCCcccccCcee----------EeccEEEEcCCCC-CCCeEEEEEEEeCCCCc----eeeEEEEEEEecCeEEecCCCcc
Q psy16652        220 DNSAALSTGGSI----------YRGNILKIPNITK-TDRGTYYCVAQNGVGRG----MKRNIAVEVEFAPVITINRPRQG  284 (384)
Q Consensus       220 ~~~~~~~~~~~~----------~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~~~~~~~~~  284 (384)
                      ++..+.......          ...++|++..... ...-..+|.+.......    .+....-.|..+|.+.+.     
T Consensus       259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----  333 (466)
T PHA03270        259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----  333 (466)
T ss_pred             CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE-----
Confidence            998775322111          1223444433221 12236899999744332    233344455556665542     


Q ss_pred             cccCCcEEEEEEEeccCC-CeEEEEECCEEecCC
Q psy16652        285 QALQYDAILECHVEAYPP-PAIVWIKDGVQIMNN  317 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~  317 (384)
                       .+++  ...|.+.--|. ..+.|..++......
T Consensus       334 -F~dG--~AVCtA~CVPegV~l~W~V~D~~~pa~  364 (466)
T PHA03270        334 -FGGD--EAVCTAACVPEGVTLAWLLGADPAPAE  364 (466)
T ss_pred             -EeCC--EEEEeccccCCCCEEEEEecCCCCCCc
Confidence             2222  23577655443 389999887666444

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.68  E-value=2.3e-07  Score=64.57  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             CcEEEEEEEeccC---CCeEEEEECCEE----e---cC------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        289 YDAILECHVEAYP---PPAIVWIKDGVQ----I---MN------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       289 ~~~~l~C~~~~~p---~~~v~W~~~~~~----~---~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +.++|.|.....+   ...+.|++....    +   ..      ...+.....-........+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999997654   337999986431    0   00      000100100011111467899999999999999999


Q ss_pred             EEe-CCcceEEEEEEEE
Q psy16652        353 AAN-KYGSAQKEIELFD  368 (384)
Q Consensus       353 a~n-~~g~~~~~~~l~v  368 (384)
                      +.+ ..|+.++.+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            975 7889999998887

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.67  E-value=1.9e-07  Score=62.33  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +.|.|.+.+ +|.+.+.|+++|.++.... ........+.....+.|.+.....++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            679999976 5888999999999986433 11111111111223445665555666789999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.64  E-value=4.8e-07  Score=59.20  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=49.3

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc-eEEEEEEEE
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS-AQKEIELFD  368 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  368 (384)
                      +.|.|.+.| .|.+.|.|++++.++......  ...........++|.+..-..+|...|+|.|.|..-. .+..+.|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            679999976 677799999999999654221  1111111224566777666666777899999997532 233444443

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.64  E-value=6.4e-07  Score=61.67  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             ccceEEEeecCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy16652        332 SDTSLRVITIERRQFGQYACKAAN-KYGSAQKEIELFD  368 (384)
Q Consensus       332 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  368 (384)
                      .+.+|.|.+++.+|+|.|.|.+.+ +.|+.++.+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            568899999999999999999999 7999999999987

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.63  E-value=2.6e-07  Score=61.84  Aligned_cols=69  Identities=23%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             eEEEEEEecc-cCCCeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEE
Q psy16652        200 TVYLYCYANG-FPAPTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAV  268 (384)
Q Consensus       200 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l  268 (384)
                      ++.|.|.+.| .|.+.++|++++..+.....         .....+.|.+.....+|.|.|+|.|.|..... ....++|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            3689999976 68789999999876543211         11123468888888888999999999865432 2334444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.63  E-value=2.3e-07  Score=62.03  Aligned_cols=75  Identities=27%  Similarity=0.416  Sum_probs=50.8

Q ss_pred             cEEEEEEeecCCC--ccEEEEEeCCCCCCcccceec-cCcee---eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         89 TADLKCSVQYADD--YPVIWMKMDTAKKMEPLPISM-SGSLI---IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        89 ~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      +|+|.|.+.....  ..+.|++.........+.... .....   ...+|+.+......+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999876543  379999987532222222221 11111   23568887776557889999999999999999996


Q ss_pred             E
Q psy16652        163 V  163 (384)
Q Consensus       163 ~  163 (384)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.62  E-value=2.3e-07  Score=66.02  Aligned_cols=76  Identities=13%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEE------e--------cCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ------I--------MNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      +....+.+|++++|.|.+.+.+...+.|++....      +        ...+++.+...   .......|+|.+++.+|
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD---KSRKSSSLHISAAQLSD   81 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc---ccCCEEEEEECCCCHHH
Confidence            4456788999999999998877779999985311      0        01233332211   11245689999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16652        346 FGQYACKAANKYG  358 (384)
Q Consensus       346 ~G~Y~C~a~n~~g  358 (384)
                      +|.|.|.+.+..+
T Consensus        82 sG~Y~C~~~~~~~   94 (109)
T cd04983          82 SAVYFCALSESGG   94 (109)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999997653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.61  E-value=5.2e-07  Score=61.65  Aligned_cols=82  Identities=10%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             EEecCCCcccccCCcEEEEEEEec-cCCCe--EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        276 ITINRPRQGQALQYDAILECHVEA-YPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       276 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +.+.+....+.+|+.++|.|.+.| .|.+.  +.|++++.++..... ..  ..........+|++..-+.+|.-.|+|.
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~-~~--~~~~~~~~~stlt~~~~r~D~g~~~sC~   80 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPF-GD--NTKSPVNAPATITITVDREDHGANFSCE   80 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccccee-cc--ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence            445555566789999999999977 66665  799999999964321 11  0011112345677665544445599999


Q ss_pred             EEeCCcce
Q psy16652        353 AANKYGSA  360 (384)
Q Consensus       353 a~n~~g~~  360 (384)
                      |.+..+..
T Consensus        81 A~l~l~~~   88 (100)
T cd05755          81 TELDLRPE   88 (100)
T ss_pred             EEeccCcc
Confidence            99988754

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.59  E-value=2.7e-07  Score=61.42  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=46.5

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ++|.|.+.| +|.+.++|+++|.++.............+.....+.|.+.....++...|+|.|.+..-..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~   72 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA   72 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence            579999977 6777999999999986443222222111222234556676555667779999999976543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.59  E-value=9.2e-07  Score=62.08  Aligned_cols=83  Identities=20%  Similarity=0.286  Sum_probs=56.7

Q ss_pred             cCCcEEEEEEEeccC-------CCeEEEEECC-----EEe----cCC----------CceeeeeeeccCccccceEEEee
Q psy16652        287 LQYDAILECHVEAYP-------PPAIVWIKDG-----VQI----MNN----------QHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p-------~~~v~W~~~~-----~~~----~~~----------~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .|++++|.|...-.|       .+.+.|.+..     ...    ..+          +|..+.  .........+|.|.+
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~--~~~~~~~~asL~i~n   78 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLP--GYPKNRYNASLVLSR   78 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEee--cCCCCCceEEEEECC
Confidence            378899999975332       3579998741     111    011          111111  111122467899999


Q ss_pred             cCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        341 IERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      ++.+|+|.|.|.+.......+..+.|.|.+.
T Consensus        79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~gv  109 (110)
T cd05902          79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTGV  109 (110)
T ss_pred             CCHHHCEEEEEEEEECCcccEEEEEEEEEEE
Confidence            9999999999999998888899999999864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.59  E-value=1.2e-07  Score=62.42  Aligned_cols=74  Identities=20%  Similarity=0.328  Sum_probs=49.9

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +|.|...+.......+. ++|.|.+.+.+ ...+.|+. ...                  ...............|.|.+
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~~------------------~~~~~~~~~~~~~~~L~i~~   60 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SNP------------------SFNSNSRGSSSSNSTLTISN   60 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEET-EEE------------------EEEEEEEEEEEEEEEEEESS
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEe-cCC------------------ceeeeeeeccceeeEEEEcc
Confidence            36677766666655555 99999998765 88999991 000                  00000111123455799999


Q ss_pred             cCCCCCeeEEEEEEE
Q psy16652        151 IQETDAGIYKCEVII  165 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~  165 (384)
                      +..+|.|.|+|.+.|
T Consensus        61 v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   61 VTRSDNGTYTCIASN   75 (75)
T ss_dssp             CCGGGTEEEEEEEEE
T ss_pred             CCHHhCcEEEEEEEC
Confidence            999999999999974

...

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.59  E-value=2.2e-05  Score=67.18  Aligned_cols=158  Identities=17%  Similarity=0.239  Sum_probs=99.1

Q ss_pred             eEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEE
Q psy16652        143 TYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWR  218 (384)
Q Consensus       143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~  218 (384)
                      ...|.|..++..++|.|+..+.+..+. .....+.|....+|.+.....   .+.+|+...-.|.+.. +|+.  .+.|+
T Consensus       197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            356999999999999999887543222 234455666688888765433   3678999999999966 4443  69999


Q ss_pred             eCCCcccccCc-----------eeEeccEEEEcCC-CCCCCeEEEEEEEeCCCCce----eeEEEEEEEecCeEEecCCC
Q psy16652        219 RDNSAALSTGG-----------SIYRGNILKIPNI-TKTDRGTYYCVAQNGVGRGM----KRNIAVEVEFAPVITINRPR  282 (384)
Q Consensus       219 ~~~~~~~~~~~-----------~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~  282 (384)
                      +++..+.....           .....++|++... ..+..-..+|.+........    ++...-.|..+|.+.+.   
T Consensus       274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~---  350 (486)
T PHA03273        274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT---  350 (486)
T ss_pred             eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE---
Confidence            99987762211           1112234555443 22333468999997544321    22333445556655542   


Q ss_pred             cccccCCcEEEEEEEeccCC--CeEEEEECC
Q psy16652        283 QGQALQYDAILECHVEAYPP--PAIVWIKDG  311 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~  311 (384)
                         .+++  ...|.+.--|.  ..+.|..++
T Consensus       351 ---F~~G--~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        351 ---VEDG--DAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             ---EeCC--EEEEecccccCCCeeEEEEccC
Confidence               2222  34588877665  589999877

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.57  E-value=8.5e-07  Score=58.07  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=51.2

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCCcccccCc-------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        201 VYLYCYANG-FPAPTISWRRDNSAALSTGG-------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      +.|.|.+.| .|.+.|+|++++..+.....       .....++|.+..-..+|+..|+|.|.|..-........|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            689999865 77789999999977754322       1223457888777777777899999996544445666666654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.57  E-value=4.2e-07  Score=62.45  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=51.1

Q ss_pred             CceEEEEEEecccCCCeEEEEeCCCcccccC-----------------c--eeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG-----------------G--SIYRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~-----------------~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      |++++|.|.........+.|++.........                 +  ....+..|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            7899999988765556899998764321110                 0  01134689999999999999999999876


Q ss_pred             CCceeeEEEEE
Q psy16652        259 GRGMKRNIAVE  269 (384)
Q Consensus       259 ~~~~~~~~~l~  269 (384)
                      +......+.|.
T Consensus        81 ~~~~~~~~~l~   91 (92)
T cd05741          81 GVTENAKFFLR   91 (92)
T ss_pred             CcEEEEEEEEE
Confidence            65555555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.56  E-value=9.5e-07  Score=62.79  Aligned_cols=85  Identities=13%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             CCCcccccCCcEEEEEEEeccC----CCeEEEEE---------------CCEEecC-C----CceeeeeeeccCccccce
Q psy16652        280 RPRQGQALQYDAILECHVEAYP----PPAIVWIK---------------DGVQIMN-N----QHYSVSHFATSDEFSDTS  335 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~---------------~~~~~~~-~----~~~~~~~~~~~~~~~~~~  335 (384)
                      ++...+..|+.+.|.|......    ...+.|.+               +|..... .    +|..+..   .....+.+
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g---~~~~~daS   81 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVG---NPSRKDGS   81 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeC---CCCcCeeE
Confidence            3445678999999999996633    23799944               3333221 1    1222211   11235678


Q ss_pred             EEEeecCCCCCeEEEEEEEeCCcce--EEEEEEE
Q psy16652        336 LRVITIERRQFGQYACKAANKYGSA--QKEIELF  367 (384)
Q Consensus       336 l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~  367 (384)
                      |.|.+++.+|.|.|+|.+.|.-+-.  ...+.|.
T Consensus        82 I~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          82 IVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             EEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            9999999999999999999976533  3445554

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.56  E-value=5.1e-07  Score=64.27  Aligned_cols=75  Identities=15%  Similarity=0.266  Sum_probs=51.9

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCE--Eec----------------CCCceeeeeeeccCccccceEEEee
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV--QIM----------------NNQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .|....+.+|+.++|.|.+.+ +...+.||+...  .+.                ...++....    ......+|+|.+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~   78 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASR----PSLTRSSLTIKS   78 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEEC----cCCCccEEEECC
Confidence            344567889999999999988 677899998532  110                011221111    111356799999


Q ss_pred             cCCCCCeEEEEEEEeCCc
Q psy16652        341 IERRQFGQYACKAANKYG  358 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~g  358 (384)
                      ++.+|+|.|.|.+.+..+
T Consensus        79 ~~~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          79 AEPEDSAVYLCASSLGGG   96 (110)
T ss_pred             CChhhCEEEEEEeeCCCC
Confidence            999999999999987643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.56  E-value=8.6e-07  Score=63.37  Aligned_cols=80  Identities=15%  Similarity=0.250  Sum_probs=49.8

Q ss_pred             CCCcccccCCcEEEEEEEeccC----CCeEEEEEC----CEE--e---c------CCCceeeee-eeccCccccceEEEe
Q psy16652        280 RPRQGQALQYDAILECHVEAYP----PPAIVWIKD----GVQ--I---M------NNQHYSVSH-FATSDEFSDTSLRVI  339 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~----~~~--~---~------~~~~~~~~~-~~~~~~~~~~~l~i~  339 (384)
                      +..+.+.+|+.++|.|.....+    ...+.|++.    +.+  +   .      ...++.... ........+.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            3445678999999999986433    236999752    111  1   0      011111110 000112245679999


Q ss_pred             ecCCCCCeEEEEEEEeCCcc
Q psy16652        340 TIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      +++.+|+|.|.|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999997664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.54  E-value=9.4e-07  Score=58.92  Aligned_cols=69  Identities=16%  Similarity=0.211  Sum_probs=46.5

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeecc-CccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATS-DEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +.|.|.+.| +|.+.|.|+++|.++..... .......+ .....+.|.+.....+|...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            679999977 58889999999998865432 22221121 11123556666666677789999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.54  E-value=0.00021  Score=60.28  Aligned_cols=235  Identities=15%  Similarity=0.252  Sum_probs=130.2

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeC--------------CCCCCcccc--eeccC--------
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMD--------------TAKKMEPLP--ISMSG--------  124 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--------------~~~~~~~~~--~~~~~--------  124 (384)
                      ....|.|.-..+++.|..+++-.+.|...-.|+.+-.|..-.              +......+.  +...+        
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (490)
T PHA03271         91 AHKMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRP  170 (490)
T ss_pred             cccCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCH
Confidence            344577777777888889999999999877666555554211              000000000  00000        


Q ss_pred             -----------------ceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEEEEe-cCCcc
Q psy16652        125 -----------------SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-VSAEVELIVR-RPPII  185 (384)
Q Consensus       125 -----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~-~~~~~  185 (384)
                                       .....+.+|-+-.........|.|.++...|+|.|+-...+..... ..+.+.+.+. .+|.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsV  250 (490)
T PHA03271        171 SELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASV  250 (490)
T ss_pred             HHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCc
Confidence                             0011344666655555667789999999999996644443222222 2333444444 45555


Q ss_pred             ccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee------------EeccEEEEcCCCCCCCeEE
Q psy16652        186 SDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI------------YRGNILKIPNITKTDRGTY  250 (384)
Q Consensus       186 ~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y  250 (384)
                      .....+   +..|+...-.|.+.. +|+.  .+.|+++|..........            ..-++|.+.....+..-..
T Consensus       251 sV~a~P---VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsL  327 (490)
T PHA03271        251 DVLAPP---VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKI  327 (490)
T ss_pred             cccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCc
Confidence            543332   578999999999966 4443  699999987664432211            1112344433333333478


Q ss_pred             EEEEEeCCCCce---eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCC-CeEEEEECCEEe
Q psy16652        251 YCVAQNGVGRGM---KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP-PAIVWIKDGVQI  314 (384)
Q Consensus       251 ~C~~~~~~~~~~---~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~  314 (384)
                      +|.+........   ++...-.|..+|.+.+      ..+++  ...|.+.--|. ..+.|..++...
T Consensus       328 RCeV~W~rd~v~s~rnAaatP~VY~~P~ISv------~FedG--~AVCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        328 SCLVAWKQGDMISTTNATAIPTVYHHPRISL------AFKDG--YAICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             eEEEEEccCCceeeeecccCCccccCCeEEE------EEeCC--EEEEeccccCCCcEEEEEecCCCC
Confidence            999997544321   2222233444454443      22222  23477655443 389999887654

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.52  E-value=1.7e-06  Score=60.11  Aligned_cols=76  Identities=20%  Similarity=0.398  Sum_probs=51.2

Q ss_pred             cEEEEEEEeccC---CCeEEEEECCE-----Eec----C-C--------CceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        290 DAILECHVEAYP---PPAIVWIKDGV-----QIM----N-N--------QHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       290 ~~~l~C~~~~~p---~~~v~W~~~~~-----~~~----~-~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      .++|.|.....+   ...+.|++...     .+.    . +        +|..+.   ......+.+|+|.+++.+|+|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~---~~~~~~~~sL~I~nv~~sD~Gt   78 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFE---TPNPIADGALILRNAVQADEGK   78 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEe---CCCCCCceEEEEecCccccceE
Confidence            578999986543   23799998321     110    0 0        122221   1112246779999999999999


Q ss_pred             EEEEEEe-CCcceEEEEEEEE
Q psy16652        349 YACKAAN-KYGSAQKEIELFD  368 (384)
Q Consensus       349 Y~C~a~n-~~g~~~~~~~l~v  368 (384)
                      |.|.+.+ +.|..++.+.|.|
T Consensus        79 Y~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          79 YKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEEEeCCCCCeeeEEEEEe
Confidence            9999998 7888888888887

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.51  E-value=3.3e-06  Score=59.43  Aligned_cols=40  Identities=20%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             ccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .+.+|.|.+++.+|+|.|.|.+.+.....+..+.|.|.+.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~Gv  116 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSGV  116 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEEE
Confidence            4678999999999999999999999999999999999875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.50  E-value=5.8e-07  Score=62.11  Aligned_cols=83  Identities=17%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             ccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCc----eeeeeee-----c-cCccccceEEEeecCCCCCeEEEEEEE
Q psy16652        286 ALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQH----YSVSHFA-----T-SDEFSDTSLRVITIERRQFGQYACKAA  354 (384)
Q Consensus       286 ~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~----~~~~~~~-----~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~  354 (384)
                      .+|++++|.|.... .....+.|++....+.....    .......     . .......+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46899999998854 34447999987533321110    0000000     0 001235789999999999999999999


Q ss_pred             eCCcce-EEEEEEEE
Q psy16652        355 NKYGSA-QKEIELFD  368 (384)
Q Consensus       355 n~~g~~-~~~~~l~v  368 (384)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            987755 56677765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.48  E-value=1.9e-06  Score=61.95  Aligned_cols=88  Identities=16%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             CCCcccccCCcEEEEEEEeccC----CCeEEEEECCE------Ee-c--C-------CCceeeee-eeccCccccceEEE
Q psy16652        280 RPRQGQALQYDAILECHVEAYP----PPAIVWIKDGV------QI-M--N-------NQHYSVSH-FATSDEFSDTSLRV  338 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~~------~~-~--~-------~~~~~~~~-~~~~~~~~~~~l~i  338 (384)
                      |..+.+..|+.++|.|......    ...+.|++...      .+ .  .       ..++.... ..........+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            3445678999999999986532    23699987321      11 0  0       11111000 00111123467999


Q ss_pred             eecCCCCCeEEEEEEEeCCcce--EEEEEEE
Q psy16652        339 ITIERRQFGQYACKAANKYGSA--QKEIELF  367 (384)
Q Consensus       339 ~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~  367 (384)
                      .+++.+|+|.|.|.+.|.....  ...+.|.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            9999999999999999876542  2345554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.47  E-value=2.6e-06  Score=58.04  Aligned_cols=75  Identities=17%  Similarity=0.286  Sum_probs=51.7

Q ss_pred             cEEEEEEEeccCCC-eEEEEECCE----Eec-----CC--------CceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        290 DAILECHVEAYPPP-AIVWIKDGV----QIM-----NN--------QHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       290 ~~~l~C~~~~~p~~-~v~W~~~~~----~~~-----~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .++|.|.....+.. .|.|.+...    .+.     .+        +|..+.    .....+.+|.|.+++.+|+|.|.|
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~----~~~~~d~sl~i~nv~~~D~G~Y~C   77 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK----NYSLLDATIMLENVGFSDIGVYIC   77 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc----CCCCCccEEEEeCCCccccEEEEE
Confidence            57899998653332 799987421    111     00        122221    122347889999999999999999


Q ss_pred             EEE-eCCcceEEEEEEEE
Q psy16652        352 KAA-NKYGSAQKEIELFD  368 (384)
Q Consensus       352 ~a~-n~~g~~~~~~~l~v  368 (384)
                      .+. .+.|+.+++..|.|
T Consensus        78 ~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          78 KAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEeCCCCCeeEEEEEEE
Confidence            975 58999999999887

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.45  E-value=2.5e-06  Score=59.07  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             CCcEEEEEEEeccCCC-eEEEEECCE----Eec-----CC----CceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        288 QYDAILECHVEAYPPP-AIVWIKDGV----QIM-----NN----QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~-~v~W~~~~~----~~~-----~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |++++|.|........ .+.|++...    .+.     .+    ..+.-............+|+|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            6789999997654333 699998431    110     00    111111111122235678999999999999999998


Q ss_pred             E-eCCcceEEEEEEEE
Q psy16652        354 A-NKYGSAQKEIELFD  368 (384)
Q Consensus       354 ~-n~~g~~~~~~~l~v  368 (384)
                      . .+.|+....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 47888888888877

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=98.45  E-value=2.5e-06  Score=59.18  Aligned_cols=86  Identities=15%  Similarity=0.286  Sum_probs=61.7

Q ss_pred             eCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccce--eccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPI--SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ++....+..|+.++|.|.+.+..   ...+.|+|..... .+-...  ..+.......+++....+.......|.|.+++
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~-lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSA-VEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCC-cEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            45566788999999999997642   3689999977652 121111  11221112467778888888889999999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      .+|++.|.|...
T Consensus        83 a~DTa~Y~Ca~e   94 (115)
T cd05721          83 ANQTDIYFCKIE   94 (115)
T ss_pred             HHHCeEEEEEee
Confidence            999999999753

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.44  E-value=1.5e-06  Score=61.40  Aligned_cols=72  Identities=14%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             ccccCCcEEEEEEEecc-CCCeEEEEECCEE-----ec------------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        284 GQALQYDAILECHVEAY-PPPAIVWIKDGVQ-----IM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      .+..|+.++|.|.+.+. +...+.|++....     +.            ...++.+...   ......+|+|.+++.+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD---SSKSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe---ccCCEEEEEECCCCHHH
Confidence            36789999999999876 5668999984321     10            0122222111   11135689999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16652        346 FGQYACKAANKYG  358 (384)
Q Consensus       346 ~G~Y~C~a~n~~g  358 (384)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998876

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.43  E-value=3.9e-06  Score=54.82  Aligned_cols=78  Identities=10%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             CcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        282 RQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ...+..|++++|+|.....+.|  .+.|...+........           ....+|.+..++..|+|.++|.++-....
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~   76 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNSSE   76 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECceE
Confidence            3456789999999999654454  9999876543321110           24678999999999999999999877666


Q ss_pred             eEEEEEEEEee
Q psy16652        360 AQKEIELFDRE  370 (384)
Q Consensus       360 ~~~~~~l~v~~  370 (384)
                      .+..+.|.|.+
T Consensus        77 ~~~~~~V~Vl~   87 (88)
T cd07694          77 KTLKLDIKVLA   87 (88)
T ss_pred             EEEEeeEEEEe
Confidence            67777777754

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.41  E-value=4.6e-06  Score=58.72  Aligned_cols=77  Identities=14%  Similarity=0.251  Sum_probs=47.0

Q ss_pred             CcccccCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCceeeeeeecc-CccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        282 RQGQALQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYSVSHFATS-DEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ......|+.++|.|.+.| +|. ..+.|++||..+..... .......+ .+...+.|.+.....++.-.|+|.+.+...
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence            334556788999999988 453 48999999999864322 22111111 222334455554333333459999999764


Q ss_pred             c
Q psy16652        359 S  359 (384)
Q Consensus       359 ~  359 (384)
                      .
T Consensus        94 ~   94 (111)
T cd05772          94 Q   94 (111)
T ss_pred             C
Confidence            4

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.35  E-value=2e-06  Score=59.59  Aligned_cols=86  Identities=20%  Similarity=0.329  Sum_probs=52.4

Q ss_pred             CeEEecCCC-cccccCCcEEEEEEEec-cC-CCeEEEEECCEEecCCCceee-eeeeccCccccceEEEeecCCCCCeEE
Q psy16652        274 PVITINRPR-QGQALQYDAILECHVEA-YP-PPAIVWIKDGVQIMNNQHYSV-SHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       274 p~~~~~~~~-~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      |.+.+.++. .....++.++|.|.+.| +| ...+.|++||.++..+..... .....+.+...+.|.+......+...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            444443333 33446778999999998 45 338999999999854321111 111122233344566655555567799


Q ss_pred             EEEEEeCCcc
Q psy16652        350 ACKAANKYGS  359 (384)
Q Consensus       350 ~C~a~n~~g~  359 (384)
                      +|.+....-.
T Consensus        82 sC~V~H~~l~   91 (100)
T cd07699          82 TCEVTHEGLS   91 (100)
T ss_pred             EEEEEecCCC
Confidence            9999987643

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.33  E-value=3.5e-06  Score=57.39  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=45.3

Q ss_pred             CCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       288 g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      |+.+.|.|.+ .++|+|.+.|+.++..+.............+.....+.|.+..-..++...++|.|.+..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            6799999987 568989999999998772111111111111111123556666555556778999999987544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.33  E-value=2.6e-06  Score=60.13  Aligned_cols=73  Identities=14%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             cCCCcccccCCcEEEEEEEeccC-CCeEEEEECC--E---EecC---------CCceeeeeeeccCccccceEEEeecCC
Q psy16652        279 NRPRQGQALQYDAILECHVEAYP-PPAIVWIKDG--V---QIMN---------NQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .|....+.+|++++|.|.+.+.. ...+.|++..  .   .+..         ..++...     .......|.|.+++.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~~~~   80 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-----GSGTDFTLTISRVEP   80 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-----ccCCEEEEEECCCCh
Confidence            34456688999999999997755 5689999843  1   1110         0122111     112345699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy16652        344 RQFGQYACKAANK  356 (384)
Q Consensus       344 ~d~G~Y~C~a~n~  356 (384)
                      +|+|.|.|.+.+.
T Consensus        81 ~Dsg~Y~Ca~~~~   93 (106)
T cd04980          81 EDAAVYYCQQYGT   93 (106)
T ss_pred             HHCEEEEEEEeCC
Confidence            9999999998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.31  E-value=6.1e-06  Score=56.56  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=46.9

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC--c--eeEeccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG--G--SIYRGNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                      ...+.+|++++|.|.... ....+.|+|++.......  .  .......+.|..++.+|+|.|+|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            345789999999998755 456799999887543211  1  111234789999999999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.29  E-value=4.1e-06  Score=60.13  Aligned_cols=86  Identities=14%  Similarity=0.230  Sum_probs=55.1

Q ss_pred             CCCcccccCCcEEEEEEEe-ccCCCeEEEEECCE-----Eec---CC-----------CceeeeeeeccCccccceEEEe
Q psy16652        280 RPRQGQALQYDAILECHVE-AYPPPAIVWIKDGV-----QIM---NN-----------QHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~-----~~~---~~-----------~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      +....+.+|+.+.|.|... ......+.|++...     .+.   ..           .+..+..   .......+|.|.
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~i~   84 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSG---NGSQNNFSLTIK   84 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEE---ETTTTEEEEEES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeee---cccCCeEEEEEC
Confidence            3445678999999999998 44555899998322     111   00           0111110   011234579999


Q ss_pred             ecCCCCCeEEEEEEEeC-CcceEEEEEEEE
Q psy16652        340 TIERRQFGQYACKAANK-YGSAQKEIELFD  368 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v  368 (384)
                      +++.+|+|.|.|.+... .......+.|.|
T Consensus        85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999999997 334444555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.29  E-value=5.5e-06  Score=56.45  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             cCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        287 LQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       287 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      .++.++|.|.+.| +|. ..+.|.++|..+..+.... ......+.....+.|.+......+...|+|.+.......+.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~   91 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED   91 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence            4566899999999 454 3799999999874332111 11111222223445656655555677999999998765443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.28  E-value=1.1e-05  Score=55.02  Aligned_cols=79  Identities=23%  Similarity=0.304  Sum_probs=49.5

Q ss_pred             CcEEEEEEEecc-CCCeEEEEECCE----EecC-----C----CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652        289 YDAILECHVEAY-PPPAIVWIKDGV----QIMN-----N----QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA  354 (384)
Q Consensus       289 ~~~~l~C~~~~~-p~~~v~W~~~~~----~~~~-----~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  354 (384)
                      +.++|.|..... ....+.|.+...    .+..     +    +.+.-+..-......+.+|+|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            357899998542 233688988432    1100     0    1111111111111246889999999999999999997


Q ss_pred             e-CCcceEEEEEEE
Q psy16652        355 N-KYGSAQKEIELF  367 (384)
Q Consensus       355 n-~~g~~~~~~~l~  367 (384)
                      . +.|+.++.+.|.
T Consensus        81 t~P~g~~~~~i~~~   94 (96)
T cd05889          81 TYPQGSWEKVIEVV   94 (96)
T ss_pred             eCCCCCeEEEEEEE
Confidence            7 588888887765

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.28  E-value=1e-05  Score=55.38  Aligned_cols=81  Identities=17%  Similarity=0.380  Sum_probs=46.4

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+.+.+....   ++.++|.|.+.|+ |.+ .+.|.++|..+...... .......+.....+.|.+   ...+.+.|
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~y   75 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARY   75 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCEE
Confidence            455554433322   6789999999995 544 89999999644322211 111111111112233333   34477899


Q ss_pred             EEEEEeCCcc
Q psy16652        350 ACKAANKYGS  359 (384)
Q Consensus       350 ~C~a~n~~g~  359 (384)
                      +|.+.+....
T Consensus        76 tC~V~H~~~~   85 (93)
T cd07698          76 SCRVEHSGLK   85 (93)
T ss_pred             EEEEEeCCCC
Confidence            9999987643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.27  E-value=1.5e-05  Score=60.10  Aligned_cols=83  Identities=23%  Similarity=0.424  Sum_probs=59.4

Q ss_pred             eEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccc-----------cCcee-E-----eccEEEEcCCCCCCCeEEEEE
Q psy16652        192 SVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALS-----------TGGSI-Y-----RGNILKIPNITKTDRGTYYCV  253 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~-----------~~~~~-~-----~~~~l~i~~~~~~d~G~Y~C~  253 (384)
                      ...+.+|++++|.|... +...+++.|+|..+.+..           -.++. .     ....|+|.+++.+|+|.|+|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45688999999999984 556778999996442210           00111 1     346899999999999999999


Q ss_pred             EEe-CCCCceeeEEEEEEEecC
Q psy16652        254 AQN-GVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       254 ~~~-~~~~~~~~~~~l~v~~~p  274 (384)
                      +.. ..|...+....|.|....
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEecCCCCCceeEEEEEEEchh
Confidence            886 445345778888887543

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.26  E-value=5.1e-06  Score=57.70  Aligned_cols=77  Identities=17%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeee----ccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFA----TSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      ..+..+..++|.|.+.|+.+.  .+.|++||.++............    .+.+...+.|.+..-...+...|+|.+...
T Consensus        11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            334457889999999995444  68999999987644322211111    122223445656544445667899999987


Q ss_pred             Ccc
Q psy16652        357 YGS  359 (384)
Q Consensus       357 ~g~  359 (384)
                      ...
T Consensus        91 ~l~   93 (102)
T cd05768          91 ALP   93 (102)
T ss_pred             CCC
Confidence            543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.24  E-value=6e-06  Score=59.41  Aligned_cols=74  Identities=12%  Similarity=0.296  Sum_probs=49.6

Q ss_pred             CCCcccccCCcEEEEEEEec--cCCCeEEEEECC--EEe------c-----------CCCceeeeeeeccCccccceEEE
Q psy16652        280 RPRQGQALQYDAILECHVEA--YPPPAIVWIKDG--VQI------M-----------NNQHYSVSHFATSDEFSDTSLRV  338 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i  338 (384)
                      +....+.+|+.++|.|.+.+  .+.+.+.|++..  ..+      .           ...++.+..  . .......|+|
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I   81 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK--D-VGKSTSTLTI   81 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE--E-CCCCEEEEEE
Confidence            33456788999999999977  677789999842  111      0           012222211  0 1113567999


Q ss_pred             eecCCCCCeEEEEEEEeC
Q psy16652        339 ITIERRQFGQYACKAANK  356 (384)
Q Consensus       339 ~~~~~~d~G~Y~C~a~n~  356 (384)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          82 QNLEKEDSATYYCAYWES   99 (116)
T ss_pred             EECCHHHCEEEEEEEecC
Confidence            999999999999998753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.24  E-value=1.6e-05  Score=51.95  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             EeecCceEEEEEEecccC--CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        194 IVSEGQTVYLYCYANGFP--APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+..|++++|+|.....+  .+.+.|...+.....  .......+|.+..+...|+|.++|.++.+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            477899999999985533  459999986654321  11235668999999999999999999865

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.23  E-value=6.4e-06  Score=57.20  Aligned_cols=68  Identities=12%  Similarity=0.173  Sum_probs=46.0

Q ss_pred             ccccCCcEEEEEEEecc--CCCeEEEEECCE--Ee---c---------CCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652        284 GQALQYDAILECHVEAY--PPPAIVWIKDGV--QI---M---------NNQHYSVSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      .+.+|++++|.|...+.  ....+.|++...  .+   .         ...++...     .......|+|.+++.+|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS-----KSGNTASLTISGAQTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE-----ccCCEEEEEECCCChhhCE
Confidence            46789999999998764  455799998431  11   0         01122211     1113567999999999999


Q ss_pred             EEEEEEEeC
Q psy16652        348 QYACKAANK  356 (384)
Q Consensus       348 ~Y~C~a~n~  356 (384)
                      .|.|.+.+.
T Consensus        77 ~Y~C~~~~~   85 (98)
T cd04984          77 DYYCQVWDS   85 (98)
T ss_pred             EEEEEEccC
Confidence            999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.23  E-value=9.7e-06  Score=55.46  Aligned_cols=80  Identities=16%  Similarity=0.307  Sum_probs=48.6

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-CCcc--EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-DDYP--VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +.+.+.+..+.+|+.++|+|.+.+. |...  |.||+++........          .+    ..........+|.+..-
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~----------~~----~~~~~~~~~stlt~~~~   69 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPF----------GD----NTKSPVNAPATITITVD   69 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccccee----------cc----ccCCCceeEEEEEEecc
Confidence            4455566667999999999999874 5555  799998876422110          00    00111223345666544


Q ss_pred             CCCCCeeEEEEEEEccC
Q psy16652        152 QETDAGIYKCEVIISLN  168 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~  168 (384)
                      +.+|...|+|++.++..
T Consensus        70 r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          70 REDHGANFSCETELDLR   86 (100)
T ss_pred             hhhCCcEEEEEEEeccC
Confidence            44444499999986543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00096 Ig Immunoglobulin domain

Probab=98.22  E-value=1.1e-05  Score=51.95  Aligned_cols=68  Identities=24%  Similarity=0.503  Sum_probs=47.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      +.|.|.+.+.+.+.+.|++++......... ..............|.|..+...|.|.|.|.+.+..+.
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence            368999988777799999998776543321 11111112234567899999999999999999988743

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.21  E-value=6e-06  Score=56.53  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=47.5

Q ss_pred             cCCCcccccCCcEEEEEEEecc--CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652        279 NRPRQGQALQYDAILECHVEAY--PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~--p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                      +|+...+..++.++|.|.+.|.  |.. .+.|.+++................+.....+.|.+..-.+.+.-.|+|.+..
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444456678999999999998  333 7899999754321111011111222222234455554444455589999998


Q ss_pred             CCcce
Q psy16652        356 KYGSA  360 (384)
Q Consensus       356 ~~g~~  360 (384)
                      ..-..
T Consensus        85 ~~l~~   89 (96)
T cd07696          85 PDLPT   89 (96)
T ss_pred             CCCCC
Confidence            76443

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.17  E-value=3.3e-05  Score=52.35  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=42.4

Q ss_pred             ccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        286 ALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ..|...+|.|.+.|+.++  .+.|.+||..+. +.. ........+   +........+..++...|+|.+.....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~---tyq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDW---TFYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCC---CEEEEEEEEECCCCCCeEEEEEEECCC
Confidence            446667899999994443  789999999986 321 111222222   122222233445677789999998654

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.17  E-value=5.4e-05  Score=51.72  Aligned_cols=72  Identities=18%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             ccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        286 ALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ..++.++|.|.+.|+ |.. .+.|++||..+..... ........+.....+.|.   +..++...|+|.+.......
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~---~~~~~~~~ysC~V~H~~l~~   86 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLE---TTPSRGDTYTCVVEHSSLQE   86 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEE---EcCCCCCEEEEEEEeCCCCC
Confidence            357889999999994 444 7999999998765411 111111111122223333   33445668999999876543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.16  E-value=1.6e-05  Score=56.25  Aligned_cols=92  Identities=16%  Similarity=0.263  Sum_probs=55.4

Q ss_pred             CeEEecC-CCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCC-Ce
Q psy16652        274 PVITINR-PRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQ-FG  347 (384)
Q Consensus       274 p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d-~G  347 (384)
                      |.+.+.+ .......++.++|.|.+.|+ |.. .+.|.+||..+..+..........  +.+...+.|.+......+ ..
T Consensus         3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~   82 (115)
T cd05769           3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN   82 (115)
T ss_pred             CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence            4444433 33334456789999999984 443 899999999886543211111111  222234556666555544 56


Q ss_pred             EEEEEEEeCCcceEEEEE
Q psy16652        348 QYACKAANKYGSAQKEIE  365 (384)
Q Consensus       348 ~Y~C~a~n~~g~~~~~~~  365 (384)
                      .|+|.+..........+.
T Consensus        83 ~ytC~V~H~g~~~~~~~~  100 (115)
T cd05769          83 TFTCIVQFYGGTDTDKWQ  100 (115)
T ss_pred             eEEEEEEEeCCccceeee
Confidence            899999998766654433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.15  E-value=2.5e-05  Score=53.34  Aligned_cols=71  Identities=15%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             cCCcEEEEEEEeccCC-C-eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        287 LQYDAILECHVEAYPP-P-AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~-~-~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .++.++|.|.+.|+.+ . .|.|.+||.. ..+.. ........+.+...+.|++..........|+|.+.....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~   88 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST   88 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence            4667999999999444 3 7999999998 33211 111111123333345566665544445689999998763

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.15  E-value=2.5e-05  Score=52.06  Aligned_cols=60  Identities=20%  Similarity=0.312  Sum_probs=41.8

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCCcccccC--------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        201 VYLYCYANG-FPAPTISWRRDNSAALSTG--------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.|.|.+.+ +|.++++|++++..+....        +.....+.|.+.....++.+.|+|.+.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999965 6888999999987664321        11122335666666666778999999986554

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.14  E-value=1.7e-05  Score=51.79  Aligned_cols=67  Identities=19%  Similarity=0.426  Sum_probs=42.8

Q ss_pred             EEEEEEEecc-CC-CeEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        291 AILECHVEAY-PP-PAIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       291 ~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      ++|.|.+.|. |+ ..+.|++||.++..+.... ......+.....+.|.+......+...|+|.|.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999985 44 3899999998754332111 111122233334556666656667789999998765

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.13  E-value=2.2e-05  Score=52.48  Aligned_cols=72  Identities=18%  Similarity=0.365  Sum_probs=48.0

Q ss_pred             ccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeee-eeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        286 ALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSH-FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ..++.++|.|.+.++ |.. .|.|+++|..+.......... ...+.+...+.|.+.   ..+...|+|.+.......
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~   80 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE   80 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence            448899999999984 544 799999999987654333222 222333333445555   566668999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.12  E-value=1.1e-05  Score=55.98  Aligned_cols=71  Identities=14%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             ccccCCcEEEEEEEec-cCCCeEEEEECCEE-----ec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        284 GQALQYDAILECHVEA-YPPPAIVWIKDGVQ-----IM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .+.+|++++|.|.... .....+.|++....     +.        ...++.+..   ........|+|.+++.+|+|.|
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD---DPDNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe---cCCCCEEEEEEcCCCHHHCEEE
Confidence            4678999999999865 34557999985421     10        112222211   1112356799999999999999


Q ss_pred             EEEEEeCC
Q psy16652        350 ACKAANKY  357 (384)
Q Consensus       350 ~C~a~n~~  357 (384)
                      .|.+....
T Consensus        80 ~C~~~~~~   87 (98)
T cd05716          80 WCGVGDDG   87 (98)
T ss_pred             EEEcccCC
Confidence            99998765

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.12  E-value=8e-05  Score=50.71  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=42.9

Q ss_pred             cCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        287 LQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       287 ~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .++..+|.|.+.| +|.. .+.|.+||..+..+... .......+.....+.|.+..   ++...|+|.+.....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence            4566899999999 4543 79999999988654221 11222222222334455443   455689999988753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.10  E-value=4.1e-05  Score=51.01  Aligned_cols=60  Identities=17%  Similarity=0.308  Sum_probs=42.1

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        201 VYLYCYANG-FPAPTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.|.|.+.+ +|.+.|+|++++..+.....         .....+.|.+.....++...|+|.+.|....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999976 68889999999876543211         1112345666566677778999999996543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.09  E-value=2e-05  Score=56.70  Aligned_cols=74  Identities=19%  Similarity=0.335  Sum_probs=49.1

Q ss_pred             CCCcccccCCcEEEEEEEecc-CCCeEEEEECC--EE---e-c--------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAY-PPPAIVWIKDG--VQ---I-M--------NNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~--~~---~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +....+..|++++|.|..... ....+.|++..  ..   + .        ..+|+.+..   .......+|+|.+++.+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF---QKAQKSISLTISALQLE   82 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE---eccCCEEEEEECCCCHH
Confidence            445668899999999998753 44579999832  11   1 0        012232221   01123567999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~C~~~~~   94 (116)
T cd07706          83 DSAKYFCALSTL   94 (116)
T ss_pred             HCEEEEEEEECC
Confidence            999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.08  E-value=1.7e-05  Score=54.78  Aligned_cols=74  Identities=15%  Similarity=0.229  Sum_probs=46.8

Q ss_pred             eccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..|+.++|.|.+.+. | ...++|++++........   ........++.|....       .|.|......|.|.|+|+
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---~~~~~~~~~gt~~~~s-------~l~v~~~~~~~~~~y~C~   80 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---TTPPVPNSDGTYSVSS-------QLTVSPSDWNSGDTYTCV   80 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---ccccccCCCCCEEEEE-------EEEECHHHhCCCCCEEEE
Confidence            468999999999886 5 578999998765322111   0011111223333322       577776667799999999


Q ss_pred             EEEccC
Q psy16652        163 VIISLN  168 (384)
Q Consensus       163 ~~~~~~  168 (384)
                      +.+...
T Consensus        81 v~h~~~   86 (95)
T cd00098          81 VTHESL   86 (95)
T ss_pred             EEeCCC
Confidence            986543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.06  E-value=5.3e-05  Score=53.41  Aligned_cols=79  Identities=20%  Similarity=0.279  Sum_probs=48.5

Q ss_pred             ecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCe
Q psy16652        180 RRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRG  248 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G  248 (384)
                      ..+|..............|+.++|.|.+.+ +|. ..++|++++..+.....         .....+.|.+.....+...
T Consensus         3 ~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~   82 (111)
T cd05772           3 RAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHS   82 (111)
T ss_pred             ccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccC
Confidence            344544444344444557888999999988 454 48999999977643211         1222335655544333334


Q ss_pred             EEEEEEEeCC
Q psy16652        249 TYYCVAQNGV  258 (384)
Q Consensus       249 ~Y~C~~~~~~  258 (384)
                      .|+|.+.|..
T Consensus        83 ~ytC~V~H~~   92 (111)
T cd05772          83 QVTCEVQHRT   92 (111)
T ss_pred             ceEEEEEeCC
Confidence            5999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.99  E-value=4.8e-05  Score=50.60  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        201 VYLYCYANG-FPAPTISWRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ++|.|.+.| +|...++|++++..+....         +.....+.|.+.....++...|+|.+.|..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999976 6777999999998754321         11223346777666667777899999985443

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.95  E-value=0.0001  Score=50.27  Aligned_cols=72  Identities=14%  Similarity=0.131  Sum_probs=41.0

Q ss_pred             ccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        284 GQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      ....+..++|.|.+.| +|.. .+.|.+||..+..+..........+.+...+.|++..-.  ....|+|.+....
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            3444577899999999 4444 789999999875442111111111111122334444322  2335999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.93  E-value=3.7e-05  Score=52.47  Aligned_cols=83  Identities=16%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             CeEEec-CCCcccccCCcEEEEEEEeccC--C-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        274 PVITIN-RPRQGQALQYDAILECHVEAYP--P-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       274 p~~~~~-~~~~~~~~g~~~~l~C~~~~~p--~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      |.+.+. |.......+..++|.|.+.++.  . ..|.|.++|..  ...........++.+...+.|.+..-.+.....|
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y   81 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF   81 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence            444443 3334455678899999999944  3 27999999875  1111111111222233344565554445555679


Q ss_pred             EEEEEeCCc
Q psy16652        350 ACKAANKYG  358 (384)
Q Consensus       350 ~C~a~n~~g  358 (384)
                      +|.+.+...
T Consensus        82 tC~V~H~~l   90 (99)
T cd04986          82 ACTVTHPEG   90 (99)
T ss_pred             EEEEECCCc
Confidence            999998754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd00096 Ig Immunoglobulin domain

Probab=97.92  E-value=4.7e-05  Score=48.93  Aligned_cols=66  Identities=20%  Similarity=0.347  Sum_probs=44.5

Q ss_pred             EEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEcc
Q psy16652         90 ADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL  167 (384)
Q Consensus        90 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  167 (384)
                      +.|.|.+.+.+...+.|++.+.........            ..............|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE------------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999988778899999977543211111            011111224455689999999999999999997543

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.91  E-value=0.0001  Score=50.28  Aligned_cols=72  Identities=10%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             CcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        289 YDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       289 ~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      ....+.|.+ .|.|.+.|.|+++.   .............+.....+.|.+.....+|.-.|+|.|.|..-.....
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~   88 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR   88 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            456788999 57899999999971   1111111111111111123456665555555668999999987544433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.89  E-value=5.4e-05  Score=53.43  Aligned_cols=69  Identities=14%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             ccccCCcEEEEEEEeccC-CCeEEEEECCEE---------e--cC-----------CCceeeeeeeccCccccceEEEee
Q psy16652        284 GQALQYDAILECHVEAYP-PPAIVWIKDGVQ---------I--MN-----------NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~---------~--~~-----------~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .+.+|+.++|.|.+.+.. ...+.|++....         +  ..           ..++....   ........|+|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence            467899999999987643 447999984321         0  00           01111110   1111245699999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy16652        341 IERRQFGQYACKAAN  355 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n  355 (384)
                      ++.+|+|.|.|...+
T Consensus        79 ~~~~Dsg~YyCa~~~   93 (107)
T cd07700          79 VKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCHHHCEEEEEeEcC
Confidence            999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.87  E-value=0.039  Score=58.88  Aligned_cols=281  Identities=11%  Similarity=0.064  Sum_probs=160.4

Q ss_pred             EEeeecceEEEEEEEeeec-cchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeC
Q psy16652         32 IHEVTGEKVTSVILLFKMS-VAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMD  110 (384)
Q Consensus        32 i~~~~~~d~G~y~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~  110 (384)
                      ...++..+.|.|...++.. .-+...     .............+.+......+..|++|.|.-.........+.|..++
T Consensus      1661 ~~~vt~~~pG~Y~VtL~aSN~vG~~t-----~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864      1661 GAKLNPLEAGPCDIFLQAANLLGQAT-----ADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred             eeEEecCCCceEEEEEEEeeccccee-----eEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence            3455668889999987765 211111     0001111222233444445556778999999876666677789999866


Q ss_pred             CCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEE-ccCcceeeeEEEEEecCCccccCC
Q psy16652        111 TAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVII-SLNNKVSAEVELIVRRPPIISDNS  189 (384)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~~~~~~~~~  189 (384)
                      ....    .        .....+  .              -+....|.|...+.- +..+.....+.|.|.++..-....
T Consensus      1736 G~s~----~--------~s~p~~--t--------------Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~ 1787 (2740)
T TIGR00864      1736 GDDL----E--------TSEPFM--S--------------HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIR 1787 (2740)
T ss_pred             CCCc----c--------cCCCce--E--------------EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEe
Confidence            4310    0        000000  0              124667888887762 222344556777777665322111


Q ss_pred             ---C-ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEE--EEeCCCCcee
Q psy16652        190 ---T-RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV--AQNGVGRGMK  263 (384)
Q Consensus       190 ---~-~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~  263 (384)
                         + ....+..|..+.+.=.+.......+.|..++.....       +...   ..+..+.|.|+-.  |.|..+.. +
T Consensus      1788 ~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-------gk~v---~~Tf~~aG~ytV~L~AsN~vs~~-~ 1856 (2740)
T TIGR00864      1788 AADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-------GKHA---CMTFPDAGTFAIRLNASNAVSGK-S 1856 (2740)
T ss_pred             cCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc-------ccee---EEecCCCeEEEEEEEEEcccCcc-e
Confidence               1 111455677777766653323346778776542111       1111   1456678999764  45766554 5


Q ss_pred             eEEEEEEEecCe-EEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEE-ecCCCceeeeeeeccCccccceEEEeec
Q psy16652        264 RNIAVEVEFAPV-ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       264 ~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      .+..+.|+.+.. +.+......+..|+.++|.+.....+..++.|.+.+.. ...+.              ..  ++. =
T Consensus      1857 ~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~--------------~~--t~~-H 1919 (2740)
T TIGR00864      1857 ASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQP--------------GP--RFS-H 1919 (2740)
T ss_pred             eeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecC--------------CC--eEE-e
Confidence            667778887763 44445556778899999999997778889999887522 21111              00  111 1


Q ss_pred             CCCCCeEE--EEEEEeCCcceEEEEEEEEeeeec
Q psy16652        342 ERRQFGQY--ACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       342 ~~~d~G~Y--~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +....|.|  .-.|.|..+...+.+.+.|.++..
T Consensus      1920 sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~ 1953 (2740)
T TIGR00864      1920 SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVR 1953 (2740)
T ss_pred             ecCCCCcEEEEEEEEeccceeeeeEEEEEEEecc
Confidence            12233555  467788888888888888877743

Note: this model has been restricted to the amino half because for technical reasons.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.85  E-value=0.00011  Score=50.96  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=42.8

Q ss_pred             eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         84 KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      +..|+.++|.|.+.+. | ...++|+++++..................++.|.+..       .|.|..-...+...|+|
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s-------~L~v~~~~w~~~~~ytC   85 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYS-------KLTVSAEDWNAGDVFTC   85 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEE-------EEEEcHHHhcCCCcEEE
Confidence            3457899999999884 3 5678999998653211100000000000124444433       46664433345568999


Q ss_pred             EEEEcc
Q psy16652        162 EVIISL  167 (384)
Q Consensus       162 ~~~~~~  167 (384)
                      .+.+..
T Consensus        86 ~V~H~~   91 (102)
T cd05768          86 VVGHEA   91 (102)
T ss_pred             EeEeCC
Confidence            998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.84  E-value=0.00014  Score=50.47  Aligned_cols=85  Identities=16%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             CCeeeeCccee-eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         73 PTISYISQEQI-KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        73 p~~~~~~~~~~-v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      |.+.+.+.... ...++.++|.|.+.+. | ...|.|+++++......   .........++.|....       .|.+.
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgty~~~s-------~L~v~   71 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGV---QTSTTEQQSDNTYSLSS-------YLTLT   71 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccE---eccccEECCCCCEEEEE-------EEEEc
Confidence            34433333332 4467889999999884 4 67899999887642110   00111111244555443       46665


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                      .-..++...|+|++.+..
T Consensus        72 ~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          72 KSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HHHhCCCCeEEEEEEecC
Confidence            554445669999998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.81  E-value=0.0003  Score=48.14  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=43.5

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+.+....   |+.++|.|.+.+. | ...++|++++.......   .........++.|....       .|.| 
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~d~ty~~~s-------~l~v-   67 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDV---ESGEILPNGDGTYQLWV-------TLEV-   67 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccc---cccceEECCCCeEEEEE-------EEEE-
Confidence            455554443332   7889999999884 4 45899999874211000   00000011122232222       3444 


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                        ...|.+.|+|++.+..
T Consensus        68 --~~~~~~~ytC~V~H~~   83 (93)
T cd07698          68 --PPEDKARYSCRVEHSG   83 (93)
T ss_pred             --CCCCCCEEEEEEEeCC
Confidence              4457789999998654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.81  E-value=0.061  Score=57.57  Aligned_cols=284  Identities=12%  Similarity=0.041  Sum_probs=156.3

Q ss_pred             eecceEEEEEEEeeec--cchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCC
Q psy16652         35 VTGEKVTSVILLFKMS--VAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTA  112 (384)
Q Consensus        35 ~~~~d~G~y~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~  112 (384)
                      .+..++|.|...+...  .......      .........-.+.+......+..|+.++|.+.........+.|..++..
T Consensus      1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s------~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs 1907 (2740)
T TIGR00864      1834 MTFPDAGTFAIRLNASNAVSGKSAS------REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAA 1907 (2740)
T ss_pred             EecCCCeEEEEEEEEEcccCcceee------eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCC
Confidence            7789999999987764  2221110      0011122222344445555678999999999887766778888887643


Q ss_pred             CCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEE-ccCcceeeeEEEEEecCCccccCCCc
Q psy16652        113 KKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVII-SLNNKVSAEVELIVRRPPIISDNSTR  191 (384)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~  191 (384)
                      .    ..+       ..+..+.  +              +-...|.|...+.. +.-......+.+.|.++..-......
T Consensus      1908 ~----~~~-------t~~~t~~--H--------------sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~ 1960 (2740)
T TIGR00864      1908 P----EVL-------QPGPRFS--H--------------SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDC 1960 (2740)
T ss_pred             c----eee-------cCCCeEE--e--------------ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCC
Confidence            1    000       0111111  1              12345666665541 11223445555555554322111111


Q ss_pred             -eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEE--EeCCCCceeeEEEE
Q psy16652        192 -SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA--QNGVGRGMKRNIAV  268 (384)
Q Consensus       192 -~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~~~l  268 (384)
                       ...+..|+...+.-.+....+..+.|+..-..+.........+..++...   ...|.|.-.+  .|..+.. +.+..+
T Consensus      1961 c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~---~~~G~~~I~v~A~N~l~s~-n~t~~i 2036 (2740)
T TIGR00864      1961 CAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA---EAAGLLEIQLGAFNALGAE-NITLQL 2036 (2740)
T ss_pred             cccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc---CCCcEEEEEEEEEcccCcc-cccEEE
Confidence             11257789999998885445567999865332222222222333333322   4689887654  4666664 555666


Q ss_pred             EEEecCeEE-ecCCCcccccCCcEEEEEEEeccCC-CeEEEEECCE-EecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        269 EVEFAPVIT-INRPRQGQALQYDAILECHVEAYPP-PAIVWIKDGV-QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       269 ~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      .|+.+.... +.........+..+.+.|.....+. ..+.|.+++. .....+......                 ....
T Consensus      2037 ~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sH-----------------tY~r 2099 (2740)
T TIGR00864      2037 EAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEH-----------------EYLH 2099 (2740)
T ss_pred             EEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEE-----------------EecC
Confidence            776655322 2222344566888999999865443 4899998743 322222111111                 1223


Q ss_pred             CeEEE--EEEEeCCcceEEEEEEEEeeee
Q psy16652        346 FGQYA--CKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       346 ~G~Y~--C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .|.|.  -.|.|......+..++.|...+
T Consensus      2100 ~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~ 2128 (2740)
T TIGR00864      2100 PGDYRVQVNASNLVSFFSAHAEINVQVLA 2128 (2740)
T ss_pred             CccEEEEEEEEcceeeeeeEEEEEEEEec
Confidence            48886  5577999888888888887764

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1480|consensus

Probab=97.80  E-value=1.3e-05  Score=72.70  Aligned_cols=186  Identities=18%  Similarity=0.242  Sum_probs=106.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      .-|.+...+.+-.+..|.++.|.|.....+.    ..-.|.......       ...+.  ...+.....      ....
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~-------~~~~~--d~tsg~~~~------~~si   87 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHE-------KLEGT--DETSGLGVR------EVSI   87 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccce-------eeecc--CcccceeEE------eeee
Confidence            5577888899999999999999999865432    233455433210       00000  000000000      0123


Q ss_pred             EEeecCCCCCe---eEEEEE--EEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeC
Q psy16652        147 SIKEIQETDAG---IYKCEV--IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRD  220 (384)
Q Consensus       147 ~i~~~~~~d~G---~Y~C~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~  220 (384)
                      .|...+.++.|   .|.|+-  ....+...+....+.+..........+....|..+..+.+.|.. .+.|...+.|+++
T Consensus        88 ~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~  167 (909)
T KOG1480|consen   88 DISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN  167 (909)
T ss_pred             eeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhcccc
Confidence            34444444443   566653  32222111111111111111122233444557788899999986 6778889999999


Q ss_pred             CCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        221 NSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       221 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      +..+.+..... .....+.+..+...|.|+|+|++.|..+......+.+.+.
T Consensus       168 e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  168 EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            88776643332 2345788999999999999999999777655555555544

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.80  E-value=8e-05  Score=52.19  Aligned_cols=71  Identities=18%  Similarity=0.352  Sum_probs=44.4

Q ss_pred             cccCCcEEEEEEEeccCCCeEEEEECCEE-------ec---CCCcee-------eeeeeccCccccceEEEeecCCCCCe
Q psy16652        285 QALQYDAILECHVEAYPPPAIVWIKDGVQ-------IM---NNQHYS-------VSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~-------~~---~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      +.+|++++|.|.........+.|++....       +.   ......       ...+..........|+|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            57899999999986654557999985421       10   000000       00000001113456999999999999


Q ss_pred             EEEEEEEe
Q psy16652        348 QYACKAAN  355 (384)
Q Consensus       348 ~Y~C~a~n  355 (384)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.77  E-value=0.00012  Score=52.76  Aligned_cols=73  Identities=11%  Similarity=0.131  Sum_probs=46.6

Q ss_pred             CCcccccCCcEEEEEEEeccC------CCeEEEEECCEE------ec--CC---------CceeeeeeeccCccccceEE
Q psy16652        281 PRQGQALQYDAILECHVEAYP------PPAIVWIKDGVQ------IM--NN---------QHYSVSHFATSDEFSDTSLR  337 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p------~~~v~W~~~~~~------~~--~~---------~~~~~~~~~~~~~~~~~~l~  337 (384)
                      ..+.+.+|+.++|.|......      ...+.|++....      +.  ..         +|+...  . .......+|.
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~--~-~~~~~~~sL~   83 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLL--G-DLGKKNCSLL   83 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEe--c-CCCCCEEEEE
Confidence            335678999999999875322      236999985321      10  00         111110  0 1123456799


Q ss_pred             EeecCCCCCeEEEEEEEeC
Q psy16652        338 VITIERRQFGQYACKAANK  356 (384)
Q Consensus       338 i~~~~~~d~G~Y~C~a~n~  356 (384)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999988764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.74  E-value=0.00023  Score=46.45  Aligned_cols=58  Identities=26%  Similarity=0.516  Sum_probs=39.9

Q ss_pred             EEEEEEeccc-CC-CeEEEEeCCCccccc----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        201 VYLYCYANGF-PA-PTISWRRDNSAALST----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       201 ~~l~C~~~~~-~~-~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      ++|.|.+.|+ |. .+++|++++..+...          ++.....+.|.+.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999884 55 489999988753221          1122233467776666677789999998854

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.74  E-value=0.00021  Score=48.52  Aligned_cols=63  Identities=24%  Similarity=0.484  Sum_probs=43.6

Q ss_pred             CceEEEEEEe-cccCCCeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        198 GQTVYLYCYA-NGFPAPTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       198 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      |+.+.|.|.+ .++|.+.+.|+.++......         .+.....+.|.+..-..++...++|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999987 56899999999998776111         111122346777665556777899999986543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.71  E-value=0.00096  Score=45.22  Aligned_cols=97  Identities=20%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee-----eCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII-----HDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ..++...|.++.|.=.........+.|.+.-........++...+....     ...|+.+..    .+.+|.|+.+++.
T Consensus         6 ~~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~----enlaLlIkaAq~q   81 (108)
T PF11465_consen    6 DHVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTS----ENLALLIKAAQPQ   81 (108)
T ss_dssp             EEEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEET----TTTEEEESS-SGG
T ss_pred             cceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeec----cCceEEEeecCcc
Confidence            3445677888888833322235578888866433323333333332222     234666654    3458999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      |+|.|.-++.+..|......+.|.|.
T Consensus        82 DSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   82 DSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             G-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cCceEEEEEEcCCCcEEEEEEEEEee
Confidence            99999999998777767777777664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.70  E-value=0.00025  Score=48.32  Aligned_cols=76  Identities=11%  Similarity=0.156  Sum_probs=43.8

Q ss_pred             CcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        289 YDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       289 ~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      ....+.|.+. |.|.+.|+|+++...   ...........+.....+.|.+.....+|...|+|.|.|..-.....+.+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3467899885 688889999987211   111111111111111234566655555566689999999875555544443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.69  E-value=0.00056  Score=46.46  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             CceEEeecCceEEE-EEEe-cccCCCeEEEEeCCCcccc------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        190 TRSVIVSEGQTVYL-YCYA-NGFPAPTISWRRDNSAALS------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       190 ~~~~~~~~g~~~~l-~C~~-~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .+...+.+|+.+.+ .|.+ .+.|.++|+|+.+......      ..+...-.+.+.+...+.+|.-.++|.+.+..-
T Consensus         8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704           8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            44566788999988 9987 6788999999987433221      112222334566666666677789999998643

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.66  E-value=0.00017  Score=49.41  Aligned_cols=66  Identities=14%  Similarity=0.292  Sum_probs=42.4

Q ss_pred             EeecCceEEEEEEeccc--CCC-eEEEEeCCCccc---------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        194 IVSEGQTVYLYCYANGF--PAP-TISWRRDNSAAL---------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~--~~~-~v~W~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .+..|+.++|.|.+.|.  |.. .++|.++++...         ..++.....+.|.+..-...+.-.|+|.+.+...
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            35568999999999887  433 789999874321         1112222334566655544455679999998643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=97.65  E-value=0.0028  Score=48.49  Aligned_cols=131  Identities=15%  Similarity=0.261  Sum_probs=75.4

Q ss_pred             CcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceee---------eCCceEEeeCCCCceEEEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLII---------HDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ..++....|++|.|.|..... ......|...+.-.    +.....+....         ....|....  ....++|+|
T Consensus        31 ~~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~----la~~~~~~~~iN~~~y~~~~~kd~y~~sv--~g~~STLTI  104 (251)
T PHA02982         31 TADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFM----LAQEANGGTGINAFNYVPGPYKDKYALSV--SGNSSTFTM  104 (251)
T ss_pred             hhhhhccCCCcEEEEecCCCcchhhhheeeCCCCeE----EEeeecCcceeccccccCCccceeEEEEE--eccceeEEe
Confidence            344557789999999997543 45678999855321    11111111111         123344444  566789999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecC-ceEEEEEEecccCCCeEEEEeCCC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEG-QTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      .++..+..|-|+|++....+........+.|+..-..       ....++ ..-.+.|-+-....+-..|..+|.
T Consensus       105 kk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~-------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        105 KKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDIL-------YVVEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             ccCCcccCCceEEEEecCCCchheeheeeeEecceEE-------EEEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            9999999999999997433333443455555322111       111223 345688987543333237887664

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.64  E-value=0.00019  Score=50.80  Aligned_cols=65  Identities=20%  Similarity=0.408  Sum_probs=43.1

Q ss_pred             ecCceEEEEEEecc-cCCC-eEEEEeCCCcccccC-----------ceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652        196 SEGQTVYLYCYANG-FPAP-TISWRRDNSAALSTG-----------GSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR  260 (384)
Q Consensus       196 ~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  260 (384)
                      .+++.++|.|.+.+ +|.. .+.|++++..+....           +.....+.|.+......+ ...|+|.+.+....
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            35678999999988 4543 899999986654321           122234467766555444 56799999986444

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.64  E-value=0.00056  Score=46.63  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             ccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         86 IAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        86 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      .++.++|.|.+.+. | ...|+|++++.......  .. .......++.|....       .|.+..-...+...|+|++
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~--~~-s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V   82 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVA--AS-TAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKV   82 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCce--ee-cccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEE
Confidence            45679999999884 4 57899999876521110  00 011112233444433       4656544344556999999


Q ss_pred             EEcc
Q psy16652        164 IISL  167 (384)
Q Consensus       164 ~~~~  167 (384)
                      .+..
T Consensus        83 ~H~~   86 (94)
T cd05847          83 THQG   86 (94)
T ss_pred             EECC
Confidence            8543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.63  E-value=0.031  Score=47.49  Aligned_cols=162  Identities=15%  Similarity=0.253  Sum_probs=90.2

Q ss_pred             eEEeecCceEEEEEEec--ccC-CCeEEEEeCCCccccc-----------------Ccee----------EeccEEEEcC
Q psy16652        192 SVIVSEGQTVYLYCYAN--GFP-APTISWRRDNSAALST-----------------GGSI----------YRGNILKIPN  241 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~--~~~-~~~v~W~~~~~~~~~~-----------------~~~~----------~~~~~l~i~~  241 (384)
                      ...+..|..+.|.|...  |.. -.+..|...+-++.+.                 +...          ...++|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            34566799999999864  333 3478897655333211                 1111          1246899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccC-CcEEEEEEEecc--CCCeEEEEECCEEecCCC
Q psy16652        242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAY--PPPAIVWIKDGVQIMNNQ  318 (384)
Q Consensus       242 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~  318 (384)
                      +..+.+|-|+|++..+.... .....+.|...-.+.-      ..++ ....+.|-+-.+  -++++.|..+|.......
T Consensus       353 a~I~N~GCY~~~a~~g~~~~-ec~~Cl~V~d~V~f~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~  425 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKE-ECRHCFKVADHVFFKW------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI  425 (500)
T ss_pred             EEEEcCCceEEEEecCcchh-hhhhheEeccEEEEEE------EeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence            99999999999999764433 2223333332222211      1122 234467988543  344799999986654322


Q ss_pred             ceeee--eeeccCccccceEEEeecCCCC-CeEEEEEEEeCCcce
Q psy16652        319 HYSVS--HFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSA  360 (384)
Q Consensus       319 ~~~~~--~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  360 (384)
                      ...+.  ...-......+.+.|.+-...| --.-.|..--..|..
T Consensus       426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Ya  470 (500)
T PHA02914        426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGYA  470 (500)
T ss_pred             cCcccccccccccccceEEEEEecccCccccccceEEEecCCCce
Confidence            11111  0011112234557777766555 345678766665544

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.63  E-value=0.00032  Score=50.27  Aligned_cols=73  Identities=11%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             CCCcccccCCcEEEEEEEeccC--CCeEEEEECC--EE---e---cC-----------CCceeeeeeeccCccccceEEE
Q psy16652        280 RPRQGQALQYDAILECHVEAYP--PPAIVWIKDG--VQ---I---MN-----------NQHYSVSHFATSDEFSDTSLRV  338 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---~---~~-----------~~~~~~~~~~~~~~~~~~~l~i  338 (384)
                      +....+.+|+.++|.|...+..  ...+.||+..  +.   +   ..           .+++....  . .......|+|
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~--~-~~~~~~~L~I   80 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITR--D-TSKSTVYLQL   80 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEE--E-ccCCEEEEEE
Confidence            4455678999999999986533  4569999832  11   1   00           01111110  0 0012246999


Q ss_pred             eecCCCCCeEEEEEEEe
Q psy16652        339 ITIERRQFGQYACKAAN  355 (384)
Q Consensus       339 ~~~~~~d~G~Y~C~a~n  355 (384)
                      .+++.+|+|.|.|.+..
T Consensus        81 ~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          81 NSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCCHHHCEEEEEEEEc
Confidence            99999999999998875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.62  E-value=0.0011  Score=45.29  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             eccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..|+.++|.|.+.+. | ...++|++++......   ..........++.|.+..       .|.+   ...+...|+|+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~---~~~~~~~~~~dgTy~~~s-------~L~~---~~~~~~~ysC~   78 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG---VVSTELIPNGDWTYQILV-------MLET---TPSRGDTYTCV   78 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC---ceecceEECCCCcEEEEE-------EEEE---cCCCCCEEEEE
Confidence            468999999999884 4 5589999988763321   000111111222344433       3444   34456699999


Q ss_pred             EEEcc
Q psy16652        163 VIISL  167 (384)
Q Consensus       163 ~~~~~  167 (384)
                      +.+..
T Consensus        79 V~H~~   83 (94)
T cd05766          79 VEHSS   83 (94)
T ss_pred             EEeCC
Confidence            98654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.60  E-value=0.016  Score=49.39  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC
Q psy16652         20 WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA   99 (384)
Q Consensus        20 ~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~   99 (384)
                      |++-+.+...|.|.++...|+|.|..-+..........    ..........+|.+.+.+.+  +.+|++..-.|.+...
T Consensus       199 ~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e----~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnY  272 (490)
T PHA03271        199 WINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLD----KHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHF  272 (490)
T ss_pred             eeccccceeeEEEEEeecccceEEEEEecCCCCCcccc----ceEEEEEEecCCCccccCCc--cccCCCceEEEEeeee
Confidence            67778899999999999999995543333333333221    11223345667777665544  4789999999999663


Q ss_pred             -C--CccEEEEEeCCC
Q psy16652        100 -D--DYPVIWMKMDTA  112 (384)
Q Consensus       100 -~--~~~v~W~~~~~~  112 (384)
                       |  ...+.|++++..
T Consensus       273 YPP~SvrlrWf~nG~~  288 (490)
T PHA03271        273 YPPGSVYVSWRQNGNI  288 (490)
T ss_pred             cCCCceEEEEEeCCcc
Confidence             3  457999999865

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.60  E-value=0.00027  Score=43.63  Aligned_cols=59  Identities=25%  Similarity=0.516  Sum_probs=39.8

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .++|.|+|.+.    .+|.|++ |..+...              .+.+|.+.....+-.|.|.|.+++  -+.+..+.|.
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQVy   64 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV--------------SNTLLDLGSRINDPRGTYSCKESE--PNKEKTLQVY   64 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc--------------cccEEeccCcccCCCcceEecCcc--CCCcEEEEEE
Confidence            35789999662    5699999 5544322              245677777777788999999988  2334444444

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.54  E-value=0.0015  Score=44.36  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             eccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..|+..+|.|.+.+.  +...++|++++.... .   .....-....+..|.+..       .|.+   ...+...|+|+
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~---~~~~~~~p~~d~tyq~~s-------~l~~---~~~~~~~ysC~   78 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-K---VEQSDLSFSKDWTFYLLK-------STEF---TPTKGDEYACR   78 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-C---cEECcEEECCCCCEEEEE-------EEEE---CCCCCCeEEEE
Confidence            456778999999884  467899999887532 1   111111112233444433       3444   45677799999


Q ss_pred             EEEcc
Q psy16652        163 VIISL  167 (384)
Q Consensus       163 ~~~~~  167 (384)
                      +.+..
T Consensus        79 V~H~~   83 (93)
T cd05770          79 VRHNS   83 (93)
T ss_pred             EEECC
Confidence            98643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.53  E-value=0.0015  Score=44.45  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             eccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..|+.++|.|.+.+.  +...++|.+++...... .  .........++.|.+..       .|.+.   +.+...|+|.
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~-~--~~~~~~~~~Dgty~~~s-------~L~v~---~~~~~~ytC~   79 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG-V--SETRYYPRQDLSFQKFS-------YLNFT---PEEGDIYSCI   79 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCc-e--EEeeeEeCCCCcEEEEE-------EEEEE---CCCCCeEEEE
Confidence            346678999999884  36789999988653211 0  00111112234444433       45553   3455699999


Q ss_pred             EEEcc
Q psy16652        163 VIISL  167 (384)
Q Consensus       163 ~~~~~  167 (384)
                      +.+..
T Consensus        80 V~H~~   84 (94)
T cd05767          80 VEHWG   84 (94)
T ss_pred             EEeCC
Confidence            98543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.53  E-value=0.00042  Score=42.53  Aligned_cols=51  Identities=20%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      .|..|+|+|...+.   .+.|.+++..+...               ...+.+.+-. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~---------------~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGS---------------DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCCCC---------------CceEEeeccC-CCCceEEEEeCCC
Confidence            47889999987632   39999998655432               2233444444 8899999999644

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.50  E-value=0.00025  Score=48.41  Aligned_cols=65  Identities=15%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             eecCceEEEEEEeccc--CC-CeEEEEeCCCccc-------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        195 VSEGQTVYLYCYANGF--PA-PTISWRRDNSAAL-------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~--~~-~~v~W~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      +..+..++|.|.+.++  |. ..|.|.+++..-.       ..++.....+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            3467889999999884  33 3799999876411       1112222334666665445555679999998654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.43  E-value=0.00092  Score=41.34  Aligned_cols=50  Identities=24%  Similarity=0.578  Sum_probs=37.8

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                      ..+.+.|.|.+.    .+|.|++ |..+...     ...+|.+.....+..|.|.|.+++
T Consensus         5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence            345899999652    4699999 5544332     256788889999999999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.42  E-value=0.0006  Score=45.21  Aligned_cols=61  Identities=16%  Similarity=0.371  Sum_probs=37.7

Q ss_pred             cEEEEEEEeccCCC--eEEEEECCE-----EecC-------------CCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        290 DAILECHVEAYPPP--AIVWIKDGV-----QIMN-------------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       290 ~~~l~C~~~~~p~~--~v~W~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .+.|.|.+.....+  .+.|++...     .+..             .+++.+...   ......+|.|.+++.+|+|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~i~~~~~~D~G~Y   77 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKD---TSKNDVSLTISNLRVEDTGTY   77 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEec---CcCCEEEEEEcCCCHHHCEEE
Confidence            36799998764443  799988541     0110             112221111   112456799999999999999


Q ss_pred             EEEE
Q psy16652        350 ACKA  353 (384)
Q Consensus       350 ~C~a  353 (384)
                      .|.+
T Consensus        78 ~C~v   81 (81)
T smart00406       78 YCAV   81 (81)
T ss_pred             EEcC
Confidence            9963

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.41  E-value=0.00096  Score=45.55  Aligned_cols=62  Identities=15%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             eecCceEEEEEEecc-cCCC-eEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        195 VSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      +..+..++|.|.+.+ +|.. .++|.++|..+...         .......+.|.+..-.  ....|+|.+.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            334677999999998 4543 78999998764322         1122223455554432  2345999999843

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.38  E-value=0.0014  Score=43.77  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=42.8

Q ss_pred             eccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..++.++|.|.+.+. | ...|.|++++........   ........++.|.+..       .|.+.   ..+...|+|+
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~---~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~   72 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVE---TTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCR   72 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEE---EEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEE
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeee---ecccccccccceeeeE-------EEEec---CCCCCEEEEE
Confidence            348999999999873 4 568999998764221110   0001112344555544       46665   5555699999


Q ss_pred             EEEccC
Q psy16652        163 VIISLN  168 (384)
Q Consensus       163 ~~~~~~  168 (384)
                      +.+...
T Consensus        73 V~H~~l   78 (83)
T PF07654_consen   73 VTHESL   78 (83)
T ss_dssp             EEETTS
T ss_pred             EEECCC
Confidence            986543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.36  E-value=0.0079  Score=51.58  Aligned_cols=126  Identities=16%  Similarity=0.152  Sum_probs=82.0

Q ss_pred             eccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC---eEEEE
Q psy16652        233 RGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP---AIVWI  308 (384)
Q Consensus       233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~  308 (384)
                      ....|.|..++...+|.|+-..-+..+.. ..+.+++....+|.+.+.+.  .+..|+.....|.+..+.++   .+.|+
T Consensus       180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        180 PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            34579999999999999999977654432 34557777777888766443  46789999999999886655   69999


Q ss_pred             ECCEEecCCCceeeeeeeccCc-cccceEEEeecCCC-CCeEEEEEEEeCCcce
Q psy16652        309 KDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITIERR-QFGQYACKAANKYGSA  360 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~  360 (384)
                      .||.++................ ...++|++...... ..-..+|.+.-..+..
T Consensus       258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~v  311 (466)
T PHA03270        258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSV  311 (466)
T ss_pred             eCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCc
Confidence            9999886433333222222111 12233433332221 1236899998766554

>PHA02633 hypothetical protein; Provisional

Probab=97.34  E-value=0.00079  Score=40.46  Aligned_cols=41  Identities=15%  Similarity=0.165  Sum_probs=36.1

Q ss_pred             ccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      ....|.|.++..+|+|.|.|..+|..-..+.++.|.|....
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            35568999999999999999999999889999999887765

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.32  E-value=0.00054  Score=42.08  Aligned_cols=50  Identities=18%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEE
Q psy16652         85 DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI  164 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  164 (384)
                      ..|.+|+|+|....   ..+.|++++....               +           ....+.+.+-. +++|.|+|.+.
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~---------------g-----------~~~~~~~~~~~-e~~G~Y~C~~~   54 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQ---------------G-----------SDEKYLSLNHF-SSSGYYHCTAD   54 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCC---------------C-----------CCceEEeeccC-CCCceEEEEeC
Confidence            46999999998542   2399999875421               0           11124444444 88999999874

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.27  E-value=0.0028  Score=43.34  Aligned_cols=70  Identities=9%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             ccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         86 IAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        86 ~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      .++.++|.|.+.+.  ....|+|.+++.. ... .. . .......++.|....       .|.+..-.......|+|++
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~-~~-~-~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V   83 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSG-VK-T-YPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKV   83 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCC-cE-E-CCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEE
Confidence            46779999999884  3678999998875 211 11 0 011111145555544       4665543322345899999


Q ss_pred             EEc
Q psy16652        164 IIS  166 (384)
Q Consensus       164 ~~~  166 (384)
                      .+.
T Consensus        84 ~H~   86 (95)
T cd04985          84 EHP   86 (95)
T ss_pred             EeC
Confidence            854

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.20  E-value=0.0041  Score=42.46  Aligned_cols=62  Identities=18%  Similarity=0.315  Sum_probs=40.7

Q ss_pred             CceEEEEEEe-cccCCCeEEEEeCCCccc------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        198 GQTVYLYCYA-NGFPAPTISWRRDNSAAL------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       198 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .....+.|.+ .|+|.++|+|+++.....      ...+...-.+.|.+.....+|+-.|+|.+.|..-
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            3467899998 678999999999722111      1111122334677766666666789999998653

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.17  E-value=0.0083  Score=52.20  Aligned_cols=125  Identities=18%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCC--CceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC---eEEEEE
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVG--RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP---AIVWIK  309 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~  309 (384)
                      ..|.|..++..++|.|+-.+.+...  ......+.+.+...|.+.+.+  ..+..|+.....|.+..+.++   .+.|+.
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            4699999999999999988765332  223566777777788666543  346889999999999886655   699999


Q ss_pred             CCEEecCCCcee-eeeeeccCccccceEEEeecCCCC--CeEEEEEEEeCCcceE
Q psy16652        310 DGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQ--FGQYACKAANKYGSAQ  361 (384)
Q Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d--~G~Y~C~a~n~~g~~~  361 (384)
                      ||.++....... ......+.....++|++......|  .-..+|.+.-..+...
T Consensus       367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS  421 (566)
T PHA03269        367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVS  421 (566)
T ss_pred             CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCch
Confidence            998887422111 111111111123344442222222  3456999987665543

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.17  E-value=0.015  Score=50.46  Aligned_cols=124  Identities=14%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC---eEEEEEC
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP---AIVWIKD  310 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~  310 (384)
                      ..|.|..++...+|.|+-...+..+. .....+.+....+|.+.+.+.  .+..|+.....|.+..+.++   .+.|+.|
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            35999999999999999887654332 224555666677887766443  46789999999999886655   6999999


Q ss_pred             CEEecCCCc--eeeeeeeccCccccceEEEeecCC-CCCeEEEEEEEeCCcce
Q psy16652        311 GVQIMNNQH--YSVSHFATSDEFSDTSLRVITIER-RQFGQYACKAANKYGSA  360 (384)
Q Consensus       311 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~  360 (384)
                      |.++.....  ........+.....++|++..... +..-..+|.+.-..+..
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v  328 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV  328 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc
Confidence            998873222  111111112112234455544332 23447899998766654

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.16  E-value=0.0047  Score=42.03  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             eeeccCcEEE-EEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         83 IKDIAQTADL-KCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        83 ~v~~g~~v~l-~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      .+.+|+.+.+ .|...+ .|.++|.|+.+..... .      .......++.+.+..       .|.+...+..|.-.++
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~------~~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vt   77 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-E------SHSQEHPNGTTTVTS-------EYIWVPSRHANGHPLT   77 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-c------eeeecCCCCCEEEEE-------EEEEEeCHHHCCcEEE
Confidence            3678999999 999855 6888999997654321 0      000011122343333       5666555566666999


Q ss_pred             EEEEEccC
Q psy16652        161 CEVIISLN  168 (384)
Q Consensus       161 C~~~~~~~  168 (384)
                      |++.+...
T Consensus        78 C~V~H~al   85 (97)
T cd07704          78 CVVSHPAL   85 (97)
T ss_pred             EEEeCccc
Confidence            99986543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.04  E-value=0.0016  Score=46.49  Aligned_cols=86  Identities=16%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             ccccCCcEEEEEEEeccC-----CCeEEEEECCEEecCCC--ceee-ee-----eeccCccccceEEEeecCCCCCeEEE
Q psy16652        284 GQALQYDAILECHVEAYP-----PPAIVWIKDGVQIMNNQ--HYSV-SH-----FATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~~~~~~~~--~~~~-~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      ....++.+.|.|.+...+     ...+.|.++|..+-.-+  .... ..     .-..-..++.+|.+...+.- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            456678999999996522     22599999987763211  0000 00     00111123456777775544 79999


Q ss_pred             EEEEeCCcceEEEEEEEEee
Q psy16652        351 CKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~  370 (384)
                      |.+.......+..+.|..+.
T Consensus       102 CeVt~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYRV  121 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE--
T ss_pred             EEEEecCCCceEEEEEEEEE
Confidence            99999999999999988744

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG1480|consensus

Probab=97.01  E-value=0.0002  Score=65.33  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=96.5

Q ss_pred             CceEEeecCceEEEEEEecccCC----CeEEEEeCCCccccc-----CceeEeccEEEEcCCCCCCCe---EEEE--EEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPA----PTISWRRDNSAALST-----GGSIYRGNILKIPNITKTDRG---TYYC--VAQ  255 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G---~Y~C--~~~  255 (384)
                      +....+..|.++.|.|++...+.    ..-.|..+.......     .+.....-.+.|.....++.+   .|.|  .+.
T Consensus        31 p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQc~a~  110 (909)
T KOG1480|consen   31 PKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQCVAW  110 (909)
T ss_pred             CCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeeeeeee
Confidence            34455678899999999865332    234565543322111     111112223444444333332   3665  555


Q ss_pred             eCCCCceeeEEEEEEEecCe-EEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCcccc
Q psy16652        256 NGVGRGMKRNIAVEVEFAPV-ITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD  333 (384)
Q Consensus       256 ~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (384)
                      ...|...+....+.+.+-.. +.-.+.-..+..+..+++.|.. .+.|...+.|++++..+..+.+....        ..
T Consensus       111 ~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~--------~d  182 (909)
T KOG1480|consen  111 SDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA--------SD  182 (909)
T ss_pred             cCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh--------hc
Confidence            55552222212222222111 2223344567777888888876 77888899999999888765444332        46


Q ss_pred             ceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        334 TSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ..+.+..++..|.|+|+|+|.|-.+...
T Consensus       183 ~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  183 HNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             CCccccchhhhhcccceeeeehhhcccc
Confidence            7799999999999999999999887654

>PHA02982 hypothetical protein; Provisional

Probab=96.96  E-value=0.01  Score=45.49  Aligned_cols=172  Identities=15%  Similarity=0.230  Sum_probs=92.3

Q ss_pred             EEeecCceEEEEEEecc-cCCCeEEEEeCCCccccc--------Cc---------------eeEeccEEEEcCCCCCCCe
Q psy16652        193 VIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALST--------GG---------------SIYRGNILKIPNITKTDRG  248 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~--------~~---------------~~~~~~~l~i~~~~~~d~G  248 (384)
                      +....++++.|.|.... ..-.+..|+.++.-....        ..               .....++|+|..++.+..|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            44667999999999633 333478898855322210        00               0113468999999999999


Q ss_pred             EEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCcee--e--ee
Q psy16652        249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS--V--SH  324 (384)
Q Consensus       249 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~--~--~~  324 (384)
                      -|+|++....+....-.-.+.|+....+-.     .........+.|-+-..-.+-..|..+|.... +.+..  +  ..
T Consensus       114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~~-----W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvtt-Gg~~sg~i~~gf  187 (251)
T PHA02982        114 CFTCEAKDAEGKEETCEKCLEIQKEDILYV-----VEEHNNETIITCFVGSKHGDVPRFIVAGIVTT-GGPMSGEIPKGF  187 (251)
T ss_pred             ceEEEEecCCCchheeheeeeEecceEEEE-----EEecCCeEEEEEEEEeccCCCccEEEeeEEec-CCcccccccccc
Confidence            999999987666544455566633322211     00122345578988554333339988876422 22111  0  01


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEE-eCCcceEEEEEEEEee
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAA-NKYGSAQKEIELFDRE  370 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~  370 (384)
                      ..........++.+..--.++--.=.|..- +..+..+-.+++.-.+
T Consensus       188 n~~segy~y~~Ikin~s~~~~V~kp~CRy~~~~~yarEYpI~~~g~~  234 (251)
T PHA02982        188 NQDSEGYRYNSIKINESVTDHIEKPYCRYWIDNDHAREFKIELGGDE  234 (251)
T ss_pred             ccccCceEEEEEEEcccccccccccEEEEEcCCCceEEEeEeecccc
Confidence            111122233445544432333334456543 3444555556665433

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.96  E-value=0.0059  Score=41.29  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             cccCCcEEEEEEEec-cCC--CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEEEEEeCCc
Q psy16652        285 QALQYDAILECHVEA-YPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYG  358 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g  358 (384)
                      +.+|..+++.|.+.+ +|.  .++.|+++...+..... ...............+++... .+|.| .|+|.|.-..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f-~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSF-LEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceeccccc-ccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence            478999999999965 555  37999987766654421 110000001112355666664 66666 89999975544

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.95  E-value=0.011  Score=40.37  Aligned_cols=61  Identities=16%  Similarity=0.279  Sum_probs=39.9

Q ss_pred             ceEEEEEEe-cccCCCeEEEEeCCCccccc------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        199 QTVYLYCYA-NGFPAPTISWRRDNSAALST------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       199 ~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ....+.|.+ .+.|.++|+|+++.......      ++...-.+.|.+.....+|+..|+|.+.|..-
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            367899987 56888999999873221111      11122234677766666677789999999643

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=96.93  E-value=0.0028  Score=38.18  Aligned_cols=38  Identities=18%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      ..|+|.++..+|+|.|.|.+++ ..-....++.|.|...
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn-~t~c~~~si~l~V~~~   55 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKN-ETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcC-CCeeEEEEEEEEEeec
Confidence            3699999999999999999973 3334555667776544

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.86  E-value=0.011  Score=41.40  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             cccccCCcEEEEEEEeccCCC---eEEEEECCE-E--e---c---------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        283 QGQALQYDAILECHVEAYPPP---AIVWIKDGV-Q--I---M---------NNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~-~--~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      .-+..|+.++|+|.++|.-..   .+.|+|... .  +   .         ...++..+.   ......-.|.|.+++.+
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~---~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDG---TLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeE---eCCCCEEEEEEcCCCHH
Confidence            345678889999999774433   588987321 1  0   0         111222111   11223456999999999


Q ss_pred             CCeEEEEEEE
Q psy16652        345 QFGQYACKAA  354 (384)
Q Consensus       345 d~G~Y~C~a~  354 (384)
                      |.+.|.|..+
T Consensus        85 DTa~Y~Ca~e   94 (115)
T cd05721          85 QTDIYFCKIE   94 (115)
T ss_pred             HCeEEEEEee
Confidence            9999999764

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.69  E-value=0.003  Score=45.20  Aligned_cols=87  Identities=17%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             eccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCce-e--eeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         85 DIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSL-I--IHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      .=+++|.|+|.+..-     +...|.|..++..     +....+... .  ....+..+ .+...++.+|.+.....- .
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~-----If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~   97 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD-----IFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-E   97 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEE-----EEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeE-----EEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-c
Confidence            457899999998652     2346999997753     222222111 1  12234444 444567778998875554 8


Q ss_pred             eeEEEEEEEccCcceeeeEEEEE
Q psy16652        157 GIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       157 G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      |.|+|.+.. ........+.|..
T Consensus        98 GnYTCeVt~-~~~ege~~i~Lk~  119 (130)
T PF08204_consen   98 GNYTCEVTE-LSREGETTIELKY  119 (130)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEEEE
T ss_pred             cceEEEEEe-cCCCceEEEEEEE
Confidence            999999973 3334555555554

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.62  E-value=0.012  Score=39.79  Aligned_cols=63  Identities=17%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             eecCceEEEEEEecc-cCC--CeEEEEeCCCcccccCce--------eEeccEEEEcCCCCCCCe-EEEEEEEeCC
Q psy16652        195 VSEGQTVYLYCYANG-FPA--PTISWRRDNSAALSTGGS--------IYRGNILKIPNITKTDRG-TYYCVAQNGV  258 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~  258 (384)
                      +.+|..+++.|.+.+ +|.  ..+.|+++...+......        ......+++... ++|.| .|+|.|.-..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence            478999999999965 555  479999866543322111        112245666554 66666 7999998543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.41  E-value=0.25  Score=42.28  Aligned_cols=134  Identities=16%  Similarity=0.276  Sum_probs=79.0

Q ss_pred             eeeeccCcEEEEEEeec---CCCccEEEEEeCCCCCCcc-ccee--ccCceeeeCCceEEeeC----CCCceEEEEEeec
Q psy16652         82 QIKDIAQTADLKCSVQY---ADDYPVIWMKMDTAKKMEP-LPIS--MSGSLIIHDSRFQLTTD----PETSTYILSIKEI  151 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~~  151 (384)
                      ..+..|..|.|.|.+.-   .......|+-.+-+..+-. ....  .-.+....+..|.+...    .+...++|+|.++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            34677999999999854   3456789998776543211 0000  01112234455655543    2456779999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCc-eEEEEEEecc--cCCCeEEEEeCCCc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ-TVYLYCYANG--FPAPTISWRRDNSA  223 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~--~~~~~v~W~~~~~~  223 (384)
                      +.+.+|-|+|++... .........|.|......       ....+|. .-...|-+..  ..++.+.|..+|..
T Consensus       354 ~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f-------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~  420 (500)
T PHA02914        354 HINNAGCYEAQAFMG-KFKEECRHCFKVADHVFF-------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVS  420 (500)
T ss_pred             EEEcCCceEEEEecC-cchhhhhhheEeccEEEE-------EEEeccCceEEEEEEEEecccCCceeEEEEccEE
Confidence            999999999999632 222233333444322111       1123433 4567888744  34567999987743

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=96.30  E-value=0.39  Score=37.77  Aligned_cols=132  Identities=11%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             eEEEEeCCCcccccCc----------eeEeccEEEE-cCCCCCCCeEEEEEEEeCCCCceee----EEEEEEEecCeEEe
Q psy16652        214 TISWRRDNSAALSTGG----------SIYRGNILKI-PNITKTDRGTYYCVAQNGVGRGMKR----NIAVEVEFAPVITI  278 (384)
Q Consensus       214 ~v~W~~~~~~~~~~~~----------~~~~~~~l~i-~~~~~~d~G~Y~C~~~~~~~~~~~~----~~~l~v~~~p~~~~  278 (384)
                      .+.|+.++..+.....          .....++|.+ .+...+..-..+|.+..........    ...-.|..+|.+++
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            6889998876653211          1122345666 2333444457899999755433222    22334445565554


Q ss_pred             cCCCcccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC--CCCe--EEEEE
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER--RQFG--QYACK  352 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G--~Y~C~  352 (384)
                      .     .   +.-...|.+.--|.  ..+.|..++..............-.   ..-....|.+...  ...|  +|+|.
T Consensus        88 ~-----F---~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~---~~pglvnirs~~pls~~~~~~~YtC~  156 (211)
T PF02124_consen   88 R-----F---EDGYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCA---EHPGLVNIRSRRPLSDEDGPVEYTCR  156 (211)
T ss_pred             E-----e---cCCEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCccc---CCcceeEeecccCCCccCCceeEEEE
Confidence            1     1   22235688766553  5899998887643332222211100   0112233433331  2235  89999


Q ss_pred             EEeC
Q psy16652        353 AANK  356 (384)
Q Consensus       353 a~n~  356 (384)
                      +...
T Consensus       157 l~GY  160 (211)
T PF02124_consen  157 LIGY  160 (211)
T ss_pred             EeeC
Confidence            8753

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03042 CD47-like protein; Provisional

Probab=96.25  E-value=0.031  Score=45.01  Aligned_cols=74  Identities=20%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             ccccCCcEEEEEEEecc-----CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        284 GQALQYDAILECHVEAY-----PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ....++++.+.|.+..-     ....+.|.+++..+-..+..           ..++|.+.... .-.|+|+|.|.+...
T Consensus        27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~-~l~GNYTCEv~~l~n   94 (286)
T PHA03042         27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSK-NLSGNYTCEAINKFN   94 (286)
T ss_pred             EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccc-cCCCceeEEEeeccc
Confidence            34567889999999762     23369999999877433221           12445554433 337999999999877


Q ss_pred             ceEEEEEEEEe
Q psy16652        359 SAQKEIELFDR  369 (384)
Q Consensus       359 ~~~~~~~l~v~  369 (384)
                      ..+..++|.-.
T Consensus        95 ~gk~~IeLk~~  105 (286)
T PHA03042         95 KIKNTIELQYV  105 (286)
T ss_pred             CccEEEEEEEE
Confidence            77777776544

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.82  E-value=0.052  Score=43.69  Aligned_cols=49  Identities=18%  Similarity=0.375  Sum_probs=38.8

Q ss_pred             CCCeEEEEEC-CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        301 PPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       301 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      ..|.+.|... |..+..+....+.        ..+.|.+.+....++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT--------~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNIT--------ETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEc--------cCceEEeeccccccCCceEEEEEEEe
Confidence            4678999985 5556655566665        46779999999999999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=95.78  E-value=0.059  Score=43.47  Aligned_cols=71  Identities=23%  Similarity=0.371  Sum_probs=47.0

Q ss_pred             eecCceEEEEEEeccc-----CCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        195 VSEGQTVYLYCYANGF-----PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ..-++++.+.|.++..     ....+.|..++..+...++.  +..+|.+... ..-.|+|+|+|.+..... ...+.+.
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~g-k~~IeLk  103 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKI-KNTIELQ  103 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCc-cEEEEEE
Confidence            4568899999998652     23469999999877665554  3345665443 334799999999855543 3334443

>KOG4597|consensus

Probab=95.56  E-value=0.019  Score=49.91  Aligned_cols=87  Identities=10%  Similarity=0.049  Sum_probs=62.0

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEE---CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIK---DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      +....+..+++..++|-+.|.+.+.|.|.+   |+..+.....-.   ..+....+...|.|-+....|+|.|+|.|.|.
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~---~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg  279 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQT---VENPVVTSTCQLVICNEWQADAGWYTCSARCG  279 (560)
T ss_pred             cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccc---cCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence            344567778999999999999999999965   433332111100   01111123567899999999999999999999


Q ss_pred             CcceEEEEEEEEe
Q psy16652        357 YGSAQKEIELFDR  369 (384)
Q Consensus       357 ~g~~~~~~~l~v~  369 (384)
                      .|...+.+.+.+.
T Consensus       280 ~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  280 AGFLRRDVPCSSV  292 (560)
T ss_pred             cceeeccceeeee
Confidence            9999998887643

>PHA03189 UL14 tegument protein; Provisional

Probab=95.39  E-value=0.22  Score=40.90  Aligned_cols=96  Identities=8%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCc--cEEEEEeCCCCCCcccceeccCc-ee-------eeCCceEEeeCCCCceEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDY--PVIWMKMDTAKKMEPLPISMSGS-LI-------IHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~--~v~W~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~L  146 (384)
                      +.+..+..|+.|++.|.+...  |..  .+......  .....+.++...+ ..       ..+.++++..-......+|
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~--e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltL  136 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSP--ERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTL  136 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeecc--ccceEEEEEcccCCEeccccceecccceeeeecccceeEEEE
Confidence            556778999999999998554  332  33444331  1122333333222 22       2334555544323344556


Q ss_pred             EEeecCCCCCeeEEEEEEEccCcceeeeEEE
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNNKVSAEVEL  177 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  177 (384)
                      .+ ++..+-+|.|.|...|...+.....+.|
T Consensus       137 tF-~v~t~taG~Y~CvLrN~tHglv~~rf~i  166 (348)
T PHA03189        137 TF-RVSTSTAGMYECVLRNETHGLVLQRFVI  166 (348)
T ss_pred             EE-EEEecccceEEEEeccccceeeeEEeee
Confidence            65 4556778999999987766655444433

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=95.37  E-value=0.5  Score=31.72  Aligned_cols=86  Identities=14%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+.+.|+..+|..|+++.+.|...=..+..+.|.-.-.                    +..+..  ..+-..+.+.+++.
T Consensus         5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~--------------------k~~~~~--g~~W~~f~LsnV~~   62 (91)
T PF03921_consen    5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS--------------------KTELDS--GPQWKAFQLSNVTE   62 (91)
T ss_dssp             -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE--------------------EEEEEE--ETTEEEEEEEEE-S
T ss_pred             EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC--------------------CcccCC--CCcEEEEEEEcccc
Confidence            46778899999999999999997433333444442110                    000111  12233577888886


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPI  184 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  184 (384)
                       | ..-.|.+. -.+........|+|+.+|.
T Consensus        63 -d-s~~~C~~~-C~g~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   63 -D-SSPLCFFN-CSGEQSSASANITVYKPPE   90 (91)
T ss_dssp             -C-EEEEEEEE-ETTEEEEEEEEEEEEB--S
T ss_pred             -C-CeEEEEEE-cCCeEEEeEEeeEEeCCCC
Confidence             5 46679885 4556677888899988764

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.32  E-value=0.014  Score=46.75  Aligned_cols=49  Identities=8%  Similarity=-0.076  Sum_probs=38.5

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeec
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMS   50 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~   50 (384)
                      ++|+|.|.--.-+.+.+.....-...+.|.+.+..+.++|.|+|.+.-.
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            5789999976655555554444567788999999999999999997763

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.27  E-value=0.072  Score=36.39  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             ccceEEEeecCCCCCeEEEEEEEeCCcceEE-EEEEEE
Q psy16652        332 SDTSLRVITIERRQFGQYACKAANKYGSAQK-EIELFD  368 (384)
Q Consensus       332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v  368 (384)
                      .+..|.|+.++..|+|.|.-.+++..|.... .+.|.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            5788999999999999999999999998853 355554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG0613|consensus

Probab=94.82  E-value=0.084  Score=52.07  Aligned_cols=158  Identities=15%  Similarity=0.076  Sum_probs=93.5

Q ss_pred             EEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCc------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGG------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      +....+..+.+.|...+...+. +.|+++........+      .......+.+..+...+.+.|.|.+.|..+......
T Consensus       344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~  423 (1205)
T KOG0613|consen  344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA  423 (1205)
T ss_pred             eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence            3455677889999988887775 999987654433321      112345677888888999999999999877653333


Q ss_pred             EEEEEEec-----CeEEecCCCcccccC--CcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652        266 IAVEVEFA-----PVITINRPRQGQALQ--YDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       266 ~~l~v~~~-----p~~~~~~~~~~~~~g--~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (384)
                      ..+.....     +.+.. ........+  +.+.+.|...+.+.+  .++|++++....... ..+.      .....+|
T Consensus       424 ~~~vs~~~~gt~~~~~kk-~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s-~~l~------r~~~tsl  495 (1205)
T KOG0613|consen  424 ESTVSEEMPGTQPPKFKK-DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRS-VTLT------RDVLTSL  495 (1205)
T ss_pred             hhhcccccCCCCCccccc-cccccccccCCcccccccCCCCccccceeEeeccCCccccccc-cccc------ccchhhh
Confidence            32222221     11211 112223333  778888999887755  566666654432111 1110      0123456


Q ss_pred             EEeecCCCCCeEEEEEEEeCCc
Q psy16652        337 RVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .+......|.|.|.-......|
T Consensus       496 Llk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  496 LLKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             eeeccCCCccchhhhhhhccCC
Confidence            7777778888888544444333

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.61  E-value=0.48  Score=31.03  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             cceEEEeecCCCCCeEEEEEE-EeCCcceEEEEEEEEe
Q psy16652        333 DTSLRVITIERRQFGQYACKA-ANKYGSAQKEIELFDR  369 (384)
Q Consensus       333 ~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v~  369 (384)
                      ...+.......+|+|.+.|.| .+..-.....+.|.|.
T Consensus        42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~   79 (80)
T PF05790_consen   42 KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL   79 (80)
T ss_dssp             SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred             ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence            334556677889999999999 6666666666666653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=94.36  E-value=0.089  Score=45.94  Aligned_cols=93  Identities=19%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-CCCceEEEEEeecC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYILSIKEIQ  152 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~  152 (384)
                      .+..-+....+..|+++.++|-+.|.+...|+|.+.-..   ....+...+         ....+ .......|+|-+..
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~an---r~~vv~~~n---------q~~e~p~vtstcql~ic~ew  265 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFAN---RENVVMRPN---------QTVENPVVTSTCQLVICNEW  265 (560)
T ss_pred             ccccCcchhhcccchhhcccccccCCcCceeeeehhhcc---ccceeecCc---------cccCCcceeeeeeEEEcchh
Confidence            344445556688999999999999999999999984321   001111011         11111 13445679999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      ..|+|.|+|.+.+.. +...+.+.+.+
T Consensus       266 q~~a~w~tCs~rcg~-g~~~rdv~c~s  291 (560)
T KOG4597|consen  266 QADAGWYTCSARCGA-GFLRRDVPCSS  291 (560)
T ss_pred             hcCCCceeecccccc-ceeeccceeee
Confidence            999999999998544 33444444443

>PHA03283 envelope glycoprotein E; Provisional

Probab=93.89  E-value=4.7  Score=36.36  Aligned_cols=75  Identities=19%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE---------ecCCC------------cccccCCcEE
Q psy16652        234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT---------INRPR------------QGQALQYDAI  292 (384)
Q Consensus       234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~---------~~~~~------------~~~~~g~~~~  292 (384)
                      .+.|.|.+++.+++|.|+-...++.+ .....+.|.|+.++...         +.|..            .-..+|+++.
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            46799999999999999999988666 44566677777622211         11111            1345788888


Q ss_pred             EEEEEecc--C---CCeEEEEE
Q psy16652        293 LECHVEAY--P---PPAIVWIK  309 (384)
Q Consensus       293 l~C~~~~~--p---~~~v~W~~  309 (384)
                      +.-.....  .   ..++.|++
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEE
Confidence            87665331  1   22799987

>PHA03283 envelope glycoprotein E; Provisional

Probab=93.49  E-value=5.6  Score=35.92  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=47.6

Q ss_pred             eEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccc--------cC------------CCceEEeecCceEE
Q psy16652        143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS--------DN------------STRSVIVSEGQTVY  202 (384)
Q Consensus       143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--------~~------------~~~~~~~~~g~~~~  202 (384)
                      ...|.|.+++.+++|.|+-..+++.+ .....+.|.|..++...        ..            .-......+|+++.
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            35799999999999999999875443 44555566665521111        00            11234467899888


Q ss_pred             EEEEec--c-cC--CCeEEEEeC
Q psy16652        203 LYCYAN--G-FP--APTISWRRD  220 (384)
Q Consensus       203 l~C~~~--~-~~--~~~v~W~~~  220 (384)
                      +.-...  . .+  ...+.|+..
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEEe
Confidence            765542  2 12  236899764

>PHA03282 envelope glycoprotein E; Provisional

Probab=93.40  E-value=5.4  Score=35.43  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        236 ILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       236 ~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      .|.+.+...+++|.|.|++..+.
T Consensus       334 dL~F~nAp~saSGLYVfVl~yNG  356 (540)
T PHA03282        334 NLQLRDASEASGGLYVCVVYVNG  356 (540)
T ss_pred             ceEecCCCcccCceEEEEEEECC
Confidence            79999999999999999998643

>KOG1026|consensus

Probab=93.32  E-value=0.16  Score=48.02  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=94.2

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ...+..|..+++.|...+.+.+...|+..+...........  ......+.        .+.|.+.|..+.. ...+.+.
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--------~~~c~~E~~~~~~-~~~v~~~  271 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLE--------NDLCIAENAVARS-NPSILLV  271 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeee--------chhhHHHHhhhhc-CceeeeE
Confidence            34577899999999999999999999987765443222111  01111111        1789888877764 4556666


Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEE---eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHV---EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      +..++...........      .-.|..   .+.|.+...|..++..+........+...     ...-+.....+..+.
T Consensus       272 ~~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~-----~~~C~~~~~~~h~~~  340 (774)
T KOG1026|consen  272 VDLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSG-----KEQCLPWNDPPHSHN  340 (774)
T ss_pred             EecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEeccccccccc-----CcCCcccCcCccccc
Confidence            6655543332222111      223544   35666788999988665333222111100     001222233356678


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|+|.+.|..|.........+..-|
T Consensus       341 ~~~~~~~e~~~g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  341 GNYTLFPELPGGKNYCRNPGGFMSRP  366 (774)
T ss_pred             CcceeeecccCccccccCcCccccCC
Confidence            99999999999988777666665554

>KOG0613|consensus

Probab=93.29  E-value=0.39  Score=47.68  Aligned_cols=170  Identities=9%  Similarity=-0.053  Sum_probs=102.4

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe-
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-  272 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-  272 (384)
                      ....+....|.|...+...+.+.|+.+.......   ...+.+..+.+......+.|+|...+..+... ..+.-.+.. 
T Consensus       240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~-~~v~~~~~i~  315 (1205)
T KOG0613|consen  240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDR-FKVTEEAPIG  315 (1205)
T ss_pred             cccchhheeeeEEeecCCCchHHHHhcchhhhcc---cCCCccccccccCCccccceeeecccCCcccc-eeeeEEeecc
Confidence            4556777888888766556666665543322211   22344566667777777888888887666542 222222221 


Q ss_pred             ---------------cCeEEe---cCCCcccccCCcEEEEEEEeccCCCe-EEEEECCEEecCCCceeeeeeeccCcccc
Q psy16652        273 ---------------APVITI---NRPRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSD  333 (384)
Q Consensus       273 ---------------~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (384)
                                     +|...+   ......+..+..+++.|...+...+. +.|++++..........+...   .....
T Consensus       316 ~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~ts  392 (1205)
T KOG0613|consen  316 KGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPV---GTVTS  392 (1205)
T ss_pred             ccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeeccccccccccccccccc---ccccC
Confidence                           111100   01112334456788999999988885 999998876655443222211   11245


Q ss_pred             ceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        334 TSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      ..+.|..+...+.+.|.|.|.|..|.....-...+..
T Consensus       393 ~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~  429 (1205)
T KOG0613|consen  393 HTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSE  429 (1205)
T ss_pred             cchhhhhcCcccccccccceeccCCcccccchhhccc
Confidence            6688999999999999999999999776544333333

>PHA03286 envelope glycoprotein E; Provisional

Probab=93.07  E-value=6  Score=35.00  Aligned_cols=77  Identities=18%  Similarity=0.095  Sum_probs=47.9

Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec-----CCccc--c-----------CCCceEEeecCceEEEEE
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR-----PPIIS--D-----------NSTRSVIVSEGQTVYLYC  205 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~~~~~--~-----------~~~~~~~~~~g~~~~l~C  205 (384)
                      ..|.|.+++.+++|.|+-..+++.+......+.|.|..     +|...  .           .........+|+++.+.-
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv  206 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV  206 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence            46999999999999999998755555555566666731     11111  0           112334467899887665


Q ss_pred             Eec-----ccCCCeEEEEeC
Q psy16652        206 YAN-----GFPAPTISWRRD  220 (384)
Q Consensus       206 ~~~-----~~~~~~v~W~~~  220 (384)
                      ...     +.-...+.|+..
T Consensus       207 ~l~~~~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        207 TAHLTNWAGAFSLEFRVLFL  226 (492)
T ss_pred             EEeecccCCCceEEEEEEEe
Confidence            543     111236889763

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.06  E-value=0.51  Score=31.68  Aligned_cols=66  Identities=18%  Similarity=0.336  Sum_probs=39.3

Q ss_pred             CCCcccccCCcEEEEEEEecc-----CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        280 RPRQGQALQYDAILECHVEAY-----PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      ++...+..|+.+++.|.....     ....+.|..++..++......+..       ..+.+++.+......-.|.|.
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~-------~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIND-------TVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEEST-------TEEEEEESS--SSEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCC-------eEEEEEEccCCCCCceEEEEE
Confidence            445567889999999998432     344799999998666554333321       235566666555444456665

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.06  E-value=0.61  Score=39.66  Aligned_cols=36  Identities=17%  Similarity=0.405  Sum_probs=23.6

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEEC
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKD  310 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~  310 (384)
                      ..+|.+.+....   ..+ .++|.|.+.|..+.  .+.|.++
T Consensus       201 ~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        201 PVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence            346666553331   122 57999999995444  7899999

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.86  E-value=1.6  Score=28.62  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=27.1

Q ss_pred             CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        212 APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       212 ~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+.+.|+..+....      .....+.+.....+|+|.+.|.|...
T Consensus        26 ~~~~~l~~~~~k~~------~~~~~~~~~~~~~~d~G~w~C~a~~~   65 (80)
T PF05790_consen   26 KPSLFLENPGKKSL------ETKKLVSTFTPTTEDSGTWVCTASDN   65 (80)
T ss_dssp             CEEEEEECSSCEEE------EESSEEEEESBTCGGSEEEEEEEEEC
T ss_pred             ChhheeeccCcccc------ccceEEEEecCCCCCCEEEEEEEcCC
Confidence            34677776554332      23445677788889999999999643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=92.66  E-value=0.26  Score=44.11  Aligned_cols=96  Identities=13%  Similarity=0.059  Sum_probs=15.7

Q ss_pred             CCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhh-hc-ccCCCC-----------eee-eCcceeeec
Q psy16652         21 DPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISL-AS-SQRTPT-----------ISY-ISQEQIKDI   86 (384)
Q Consensus        21 ~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~-~~-~~~~p~-----------~~~-~~~~~~v~~   86 (384)
                      .+...+.+.|.|.+++..|+|.|+...............++..... .. ...+|.           +.+ .....+..+
T Consensus        82 ~~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~  161 (439)
T PF02480_consen   82 PRLTFNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSP  161 (439)
T ss_dssp             ----------------------------------------------------------------SEEEEEE--SEEE--T
T ss_pred             cceeecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecC
Confidence            3444566789999999999999999987543222222222221111 11 111221           111 123344668


Q ss_pred             cCcEEEEEEeecC----C--CccEEEEEeCCCCCCc
Q psy16652         87 AQTADLKCSVQYA----D--DYPVIWMKMDTAKKME  116 (384)
Q Consensus        87 g~~v~l~C~~~~~----~--~~~v~W~~~~~~~~~~  116 (384)
                      |+++.+.-.....    .  ...+.|++..-.....
T Consensus       162 Gdtf~~~v~l~~~~~d~~~f~~~i~W~~~~~~~~C~  197 (439)
T PF02480_consen  162 GDTFHLSVHLQSEAHDDPPFSLEIDWYYMPTDPSCA  197 (439)
T ss_dssp             T--EE---EEEEEESSS--EEEEEEEEEE---TT-S
T ss_pred             CCcEEEeEEEEeccCCCCCeeEEEEEEEecCCCCCc
Confidence            9988887665331    2  2368999877544333

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.58  E-value=1.1  Score=30.04  Aligned_cols=69  Identities=12%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             eeCcceeeeccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +.++..++..|++++..|.....     ....+.|..++..               .++.+|....+   ..+.+++.++
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~---------------iP~~qy~~in~---~~SsVT~~~~   69 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEK---------------IPGSQYRVIND---TVSSVTLPNL   69 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCE---------------STCGCEEEEST---TEEEEEESS-
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEE---------------CChhHcceeCC---eEEEEEEccC
Confidence            34667778999999999998643     3457889886653               34455554442   2356777777


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      ....+-.|-|..
T Consensus        70 ~~~~~~L~cC~l   81 (89)
T PF06328_consen   70 NPTGATLFCCKL   81 (89)
T ss_dssp             -SSEEEEEEEEE
T ss_pred             CCCCceEEEEEE
Confidence            666655677764

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03286 envelope glycoprotein E; Provisional

Probab=92.33  E-value=4.3  Score=35.82  Aligned_cols=76  Identities=17%  Similarity=0.135  Sum_probs=50.3

Q ss_pred             ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec-----CeEE--ecCC------------CcccccCCcEEEE
Q psy16652        234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA-----PVIT--INRP------------RQGQALQYDAILE  294 (384)
Q Consensus       234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~--~~~~------------~~~~~~g~~~~l~  294 (384)
                      .+.|.|.+++.+++|.|+-...|+.+......+.+.|...     |...  +.|+            ..-..+|+++.+.
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS  205 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS  205 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence            4579999999999999999999877766566677777422     2222  1111            1234578888777


Q ss_pred             EEEe-c----cCCCeEEEEE
Q psy16652        295 CHVE-A----YPPPAIVWIK  309 (384)
Q Consensus       295 C~~~-~----~p~~~v~W~~  309 (384)
                      -... .    ....++.|++
T Consensus       206 v~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        206 VTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEEeecccCCCceEEEEEEE
Confidence            6654 1    2233799987

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=91.91  E-value=0.87  Score=30.53  Aligned_cols=73  Identities=11%  Similarity=0.221  Sum_probs=41.7

Q ss_pred             cEEEEEEE-eccCCCeEEEEEC--CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        290 DAILECHV-EAYPPPAIVWIKD--GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       290 ~~~l~C~~-~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      -+...|.+ .|.|++.|.|.-+  |..     ........++...-.+.+.+-.....|.-..+|.+....-+....+.|
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L   96 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL   96 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence            34567995 7889999999742  211     000000111111123445556666667778999999876555555555


Q ss_pred             E
Q psy16652        367 F  367 (384)
Q Consensus       367 ~  367 (384)
                      .
T Consensus        97 ~   97 (98)
T cd05890          97 N   97 (98)
T ss_pred             c
Confidence            4

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=91.19  E-value=0.41  Score=42.92  Aligned_cols=77  Identities=25%  Similarity=0.184  Sum_probs=12.5

Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc-------------------ccCCCceEEeecCceEEEE
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII-------------------SDNSTRSVIVSEGQTVYLY  204 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~g~~~~l~  204 (384)
                      ..|.|.+++.+|+|.|+-..++..+......+.|.|..+...                   ...........+|+++.+.
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~  168 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS  168 (439)
T ss_dssp             ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred             CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence            469999999999999999987554444444555655432111                   0011233456789988776


Q ss_pred             EEec----ccCC--CeEEEEeC
Q psy16652        205 CYAN----GFPA--PTISWRRD  220 (384)
Q Consensus       205 C~~~----~~~~--~~v~W~~~  220 (384)
                      -...    ...+  ..+.|+.-
T Consensus       169 v~l~~~~~d~~~f~~~i~W~~~  190 (439)
T PF02480_consen  169 VHLQSEAHDDPPFSLEIDWYYM  190 (439)
T ss_dssp             -EEEEEESSS--EEEEEEEEEE
T ss_pred             EEEEeccCCCCCeeEEEEEEEe
Confidence            6542    2111  26899764

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03281 envelope glycoprotein E; Provisional

Probab=90.03  E-value=9.5  Score=34.67  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=48.1

Q ss_pred             ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE-----ecCCC------------cccccCCcEEEEEE
Q psy16652        234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT-----INRPR------------QGQALQYDAILECH  296 (384)
Q Consensus       234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-----~~~~~------------~~~~~g~~~~l~C~  296 (384)
                      .+.|.|.+++.+++|.|+-......|......+.|.|+..+.-.     +.+..            .-..+|+++.+.-.
T Consensus       297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~  376 (642)
T PHA03281        297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH  376 (642)
T ss_pred             CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence            45899999999999999998886656544446667776533111     11111            12356787777766


Q ss_pred             Eecc--C---CCeEEEEE
Q psy16652        297 VEAY--P---PPAIVWIK  309 (384)
Q Consensus       297 ~~~~--p---~~~v~W~~  309 (384)
                      ....  .   ..++.|++
T Consensus       377 L~s~ihD~pFsleI~Wyy  394 (642)
T PHA03281        377 LQYKIHDAPFDLLLEWLY  394 (642)
T ss_pred             EeeeccCCCceeEEEEEE
Confidence            5321  2   23799987

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=90.01  E-value=18  Score=34.45  Aligned_cols=203  Identities=14%  Similarity=0.202  Sum_probs=110.5

Q ss_pred             CCCCCeeEEEEEEEccCc-----ceeeeEEEEEecC---Cc-ccc-CCCceEEeecCceEEEEEEecccCCCeEE-EE-e
Q psy16652        152 QETDAGIYKCEVIISLNN-----KVSAEVELIVRRP---PI-ISD-NSTRSVIVSEGQTVYLYCYANGFPAPTIS-WR-R  219 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~---~~-~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~v~-W~-~  219 (384)
                      +++.+|.|.-.+......     .....+...+...   |. +.. ..+....+..|+++.+.+.+.+.....+. |. +
T Consensus       345 ~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~  424 (667)
T PRK14081        345 KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKK  424 (667)
T ss_pred             eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEE
Confidence            456789998888743221     1233445555543   21 111 11223346679999999999764444433 33 3


Q ss_pred             CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC--CCC---ceeeEEEEEEEe-cCe-EE--ecCCCcccccCCc
Q psy16652        220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG--VGR---GMKRNIAVEVEF-APV-IT--INRPRQGQALQYD  290 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~---~~~~~~~l~v~~-~p~-~~--~~~~~~~~~~g~~  290 (384)
                      +|..+..  .....+..+.+.   +.-+|.|+-.+.-.  ...   .....+.+.|.. .|. +.  +.+.......|+.
T Consensus       425 ng~~ve~--~~Y~~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~  499 (667)
T PRK14081        425 DGKEEEK--IDYGKNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDD  499 (667)
T ss_pred             CCEEEEE--eecccccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCE
Confidence            4433321  111223334443   35689999877632  211   236677888875 554 22  3455667889999


Q ss_pred             EEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE--eCCcc----eEE
Q psy16652        291 AILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA--NKYGS----AQK  362 (384)
Q Consensus       291 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~----~~~  362 (384)
                      +++.|.+.+.-..  .+.-+.||..+...+-           .....+++.   +.-+|.|+-.+.  |....    ...
T Consensus       500 i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Y-----------s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k  565 (667)
T PRK14081        500 IEIEVIIQNTKDVLIKYILKINGHKVEETDY-----------IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKK  565 (667)
T ss_pred             EEEEEEEeCCCeEEEEEEEEECCEEEEEeec-----------cccceEEEe---ecCCceEEEEEEEcccccccccccce
Confidence            9999999885444  3444556665532221           123334444   344688875544  43332    234


Q ss_pred             EEEEEEeeeec
Q psy16652        363 EIELFDRETQT  373 (384)
Q Consensus       363 ~~~l~v~~~~~  373 (384)
                      .+.+.|.++.|
T Consensus       566 ~v~~~V~e~~p  576 (667)
T PRK14081        566 EVKFYVREALP  576 (667)
T ss_pred             EEEEEEcCCCC
Confidence            56667776543

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=89.92  E-value=4.4  Score=27.27  Aligned_cols=81  Identities=6%  Similarity=0.070  Sum_probs=48.4

Q ss_pred             EecCCCcccccCCcEEEEEEEeccCCC-eEEEEEC--CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        277 TINRPRQGQALQYDAILECHVEAYPPP-AIVWIKD--GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       277 ~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      .+.|+...+..|+++.+.|..+- +.| .+.|.-.  ...+..+.             .=..+.+.+++. | ..-.|.+
T Consensus         7 ~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~-------------~W~~f~LsnV~~-d-s~~~C~~   70 (91)
T PF03921_consen    7 RVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGP-------------QWKAFQLSNVTE-D-SSPLCFF   70 (91)
T ss_dssp             EEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEET-------------TEEEEEEEEE-S-C-EEEEEEE
T ss_pred             EEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCC-------------cEEEEEEEcccc-C-CeEEEEE
Confidence            34556667889999999999864 333 4454211  11111111             112356777775 4 5778999


Q ss_pred             EeCCcceEEEEEEEEeeeec
Q psy16652        354 ANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .-...+..+++.|.|..+|.
T Consensus        71 ~C~g~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   71 NCSGEQSSASANITVYKPPE   90 (91)
T ss_dssp             EETTEEEEEEEEEEEEB--S
T ss_pred             EcCCeEEEeEEeeEEeCCCC
Confidence            87766778888999988764

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=89.89  E-value=1.6  Score=37.28  Aligned_cols=21  Identities=19%  Similarity=0.713  Sum_probs=17.0

Q ss_pred             eEEEEEEecc-cCCC-eEEEEeC
Q psy16652        200 TVYLYCYANG-FPAP-TISWRRD  220 (384)
Q Consensus       200 ~~~l~C~~~~-~~~~-~v~W~~~  220 (384)
                      .++|+|.+.| +|.. .++|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            4799999999 4443 7899998

>PHA03189 UL14 tegument protein; Provisional

Probab=89.88  E-value=4.4  Score=33.66  Aligned_cols=79  Identities=14%  Similarity=0.203  Sum_probs=41.1

Q ss_pred             CCCcccccCCcEEEEEEEec--cCCCeEE-----EEE----------CCEEecCCCceeeeee----eccCccccceEEE
Q psy16652        280 RPRQGQALQYDAILECHVEA--YPPPAIV-----WIK----------DGVQIMNNQHYSVSHF----ATSDEFSDTSLRV  338 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~--~p~~~v~-----W~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i  338 (384)
                      +....+..|+.+++.|.+..  .|.+.|.     |..          .|.++.++-...+...    .+..-....+|++
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF  138 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF  138 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence            34456788999999999843  4555432     211          3444443322222210    0000001123333


Q ss_pred             eecCCCCCeEEEEEEEeCCcc
Q psy16652        339 ITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       339 ~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      . +..+-+|.|.|+..|..-.
T Consensus       139 ~-v~t~taG~Y~CvLrN~tHg  158 (348)
T PHA03189        139 R-VSTSTAGMYECVLRNETHG  158 (348)
T ss_pred             E-EEecccceEEEEeccccce
Confidence            3 4456689999999997543

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=88.14  E-value=2.9  Score=28.17  Aligned_cols=58  Identities=12%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             eEEEEEEe-cccCCCeEEEEeCCCccc------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        200 TVYLYCYA-NGFPAPTISWRRDNSAAL------STGGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       200 ~~~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+.-.|.+ .|.|+..|+|.-+-....      ..++...-.+.+.+......|.-..+|++.+.
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~   86 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR   86 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence            45678985 789999999985322111      11111122234555566667777899999986

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=86.17  E-value=1.9  Score=39.20  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=17.9

Q ss_pred             EEEEEeecCCCCCee--EEEEEE--EccCcceeeeEEEEEecCCccccCCC-ceEEeecCceEEEEEEecccC-------
Q psy16652        144 YILSIKEIQETDAGI--YKCEVI--ISLNNKVSAEVELIVRRPPIISDNST-RSVIVSEGQTVYLYCYANGFP-------  211 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~--Y~C~~~--~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~-------  211 (384)
                      ..|.|..... -.|.  |...+.  ..........+.|.|...+....... ....+..++.+.|.....-.|       
T Consensus        38 ~~l~ip~~~L-~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~  116 (440)
T PF02010_consen   38 PQLTIPPYTL-PPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDS  116 (440)
T ss_dssp             SECEEECES---SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred             eEEEeCcccC-CCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCC
Confidence            3577777665 2344  455554  11222345566677765544333222 222333345677665432222       


Q ss_pred             CCeEEEEeCCCccc-c-------cCceeEeccEEEEcCCCCCCCeEEEEEEE--eCCCCceeeEEEEEE--EecCeEEec
Q psy16652        212 APTISWRRDNSAAL-S-------TGGSIYRGNILKIPNITKTDRGTYYCVAQ--NGVGRGMKRNIAVEV--EFAPVITIN  279 (384)
Q Consensus       212 ~~~v~W~~~~~~~~-~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~~~~~~~l~v--~~~p~~~~~  279 (384)
                      ..++.|........ .       ..........+.|..........|...+.  ...+...+....+.+  ..+|.+.+.
T Consensus       117 ~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~  196 (440)
T PF02010_consen  117 GLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSIS  196 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEc
Confidence            23678876443222 0       01112234456665443333333655554  333212223333333  234554443


Q ss_pred             CCC---cccccCCcEEEEEEEecc----CCCeEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeEEE
Q psy16652        280 RPR---QGQALQYDAILECHVEAY----PPPAIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       280 ~~~---~~~~~g~~~~l~C~~~~~----p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      ...   ..+..++.+.|.-.+.+.    ....+.|..............+.  ............|.|..-..+..+.|.
T Consensus       197 ~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~  276 (440)
T PF02010_consen  197 CVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYT  276 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccccccccccccc
Confidence            322   236667777776444332    23478898710000000000000  001111123455777765566666665


Q ss_pred             --EEEEeCCcce-EEEEEEEEeeeec
Q psy16652        351 --CKAANKYGSA-QKEIELFDRETQT  373 (384)
Q Consensus       351 --C~a~n~~g~~-~~~~~l~v~~~~~  373 (384)
                        +.|.+..+.. .+++.+.+..+|.
T Consensus       277 ~~l~v~~~~~~~~~a~~~~~~n~pP~  302 (440)
T PF02010_consen  277 FRLTVTDSSGSSGSASISFTVNAPPS  302 (440)
T ss_dssp             --------------------------
T ss_pred             cccccccccccccccccccccccccc
Confidence              5666665544 5667777755553

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=85.20  E-value=9.1  Score=25.65  Aligned_cols=56  Identities=14%  Similarity=0.150  Sum_probs=37.5

Q ss_pred             cEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       290 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ...|.+.+.+. ...+.|+.||..+.....             ...+.+.   ....|.|+-.+....|....
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-------------~~~~~~~---~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-------------GHQLFWQ---PDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCC-------------CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence            45566666665 459999999999944332             2223322   24569999999888887665

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03052 Hypothetical protein; Provisional

Probab=84.73  E-value=2.4  Score=26.32  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=26.7

Q ss_pred             CCcccccCCcEEEEEEEe-ccC--CCeEEEEECCEEec
Q psy16652        281 PRQGQALQYDAILECHVE-AYP--PPAIVWIKDGVQIM  315 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~-~~p--~~~v~W~~~~~~~~  315 (384)
                      ..+.+..|..++|.|.+. |.+  .+.+.|.-|+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            445678899999999994 332  34699999998883

>PHA03281 envelope glycoprotein E; Provisional

Probab=84.16  E-value=34  Score=31.38  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC-------ccccC---------CCceEEeecCceEEEEEEe
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP-------IISDN---------STRSVIVSEGQTVYLYCYA  207 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~---------~~~~~~~~~g~~~~l~C~~  207 (384)
                      ..|.|.+++.+++|.|+-..+...+......+.|.|...+       .+.+.         .-.+....+|+++.+.-..
T Consensus       298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L  377 (642)
T PHA03281        298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL  377 (642)
T ss_pred             CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence            4799999999999999998873333333435556665322       11100         0123345689988777664


Q ss_pred             cc----cC-CCeEEEEeC
Q psy16652        208 NG----FP-APTISWRRD  220 (384)
Q Consensus       208 ~~----~~-~~~v~W~~~  220 (384)
                      ..    .+ ...+.|+.-
T Consensus       378 ~s~ihD~pFsleI~Wyy~  395 (642)
T PHA03281        378 QYKIHDAPFDLLLEWLYV  395 (642)
T ss_pred             eeeccCCCceeEEEEEEe
Confidence            32    12 237899763

>PHA03112 IL-18 binding protein; Provisional

Probab=82.52  E-value=10  Score=27.80  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=40.5

Q ss_pred             eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC-CCeeEE
Q psy16652         84 KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET-DAGIYK  160 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~  160 (384)
                      ..+|+.+.|+|.+-+. | ..-+.|..++...-.+......-+.....+.  .....+......|.+.+++.. +.-.++
T Consensus        35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~--~~~~~~~~~~~~l~l~~vt~~~~~T~~T  112 (141)
T PHA03112         35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESE--KPRTCDNEPRTDLIVYNVTDEMKFTKLT  112 (141)
T ss_pred             cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCc--cccccCCcceeEEEEEecCCcceecceE
Confidence            3679999999998653 5 4679999776321111111111111111110  011111233446777777744 223888


Q ss_pred             EEEE
Q psy16652        161 CEVI  164 (384)
Q Consensus       161 C~~~  164 (384)
                      |...
T Consensus       113 CVL~  116 (141)
T PHA03112        113 CVLM  116 (141)
T ss_pred             EEEe
Confidence            8875

>KOG0200|consensus

Probab=82.18  E-value=29  Score=33.30  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.0

Q ss_pred             EEEEEeecCCCCCeeEEEEEEE
Q psy16652        144 YILSIKEIQETDAGIYKCEVII  165 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~  165 (384)
                      ..+.+..+..+|.|.|+|.+.+
T Consensus        13 ~~~~~~~~~~~~~~~y~~~~~~   34 (609)
T KOG0200|consen   13 WFLIIDSVVPGDKGFYTCLVSN   34 (609)
T ss_pred             ceEEEEEEEecCCccEEEEEec
Confidence            3578888889999999999975

>PHA03052 Hypothetical protein; Provisional

Probab=81.36  E-value=3.6  Score=25.53  Aligned_cols=32  Identities=16%  Similarity=0.452  Sum_probs=24.3

Q ss_pred             cceeeeccCcEEEEEEeecC---CCccEEEEEeCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYA---DDYPVIWMKMDT  111 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~  111 (384)
                      ..+.+..|+.++|.|.+.-.   ....|.|.-++.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~   39 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGM   39 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCc
Confidence            45567899999999998532   356789998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-18
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		3e-17
3kld_A	384	Ptprg Cntn4 Complex Length = 384		3e-17
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		8e-15
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		5e-14
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-13
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-10
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-10
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-13
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-05
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-13
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-13
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-05
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-13
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		4e-13
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-11
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-11
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-11
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-10
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-10
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		6e-10
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		7e-10
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-09
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-09
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-09
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-09
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-09
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		4e-09
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		3e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-09
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		4e-09
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		1e-08
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		3e-08
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		4e-08
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-07
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-07
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		5e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		5e-07
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		6e-07
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		6e-07
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		6e-07
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		7e-07
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		7e-07
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		8e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		8e-07
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		8e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-06
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		2e-06
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		3e-06
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		4e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-06
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		1e-05
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		1e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-05
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		2e-05
1cr9_L	219	Crystal Structure Of The Anti-Prion Fab 3f4 Length		4e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		6e-05
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		6e-05
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		6e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		7e-05
4frw_A	218	Crystal Structure Of Human Nectin-4 Extracellular F		5e-04
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		5e-04
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		5e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-04
2ocw_A	585	Solution Structure Of Human Secretory Component Len		6e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		7e-04
3fmg_L	211	Structure Of Rotavirus Outer Capsid Protein Vp7 Tri		7e-04

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 121/294 (41%), Gaps = 42/294 (14%)
Query: 86  IAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
           +  T  LKC V   D  P I W K    + + P+P          DSR  +       + 
Sbjct: 135 MGDTVLLKCEV-IGDPMPTIHWQK--NQQDLNPIP---------GDSRVVVLP-----SG 177
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN-----STRSVIVSEGQ 199
            L I  +Q  D+G+Y+C      + +   E E+ +   P +           +VI  EG+
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 200 TVYLYCYANGFPAPTISWRRDNSA--ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257
              L C  +G+P P+ +W R        S   S+  G+ L I N+T  D GTY CV    
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTY- 296
Query: 258 VGRGMKRNIAVEVEF---APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQ 313
                  NI+   E     P   +N P    A +  D   EC V   P P + W+K+G  
Sbjct: 297 ----KNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDV 352
Query: 314 IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
           ++ + ++ +           ++LR++ + +   G Y C A N+ G+AQ   +L 
Sbjct: 353 VIPSDYFQI--------VGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNK--VSAEVELIVRRPPIISDNSTR-------SVIVS 196
           L I +++++D G Y C V  ++ N   +     LI+R   ++ +   +       +V   
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 217
Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQ 255
           +G TV L C+A G P PTI WRR +   ++     ++ N IL+IPN  + D G+Y CVA+
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 277
Query: 256 NGVGRGM-KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI 314
           N  G+ + K  +    +   V  IN      A++     EC     P P   W+K+G  +
Sbjct: 278 NSRGKNVAKGQLTFYAQPNWVQIINDIH--VAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
           +      +            +L +  +     G Y C A NK+G
Sbjct: 336 LTRDRIQIEQ---------GTLNITIVNLSDAGMYQCVAENKHG 370

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNK--VSAEVELIVRRPPIISDNSTR-------SVIVS 196
           L I +++++D G Y C V  ++ N   +     LI+R   ++ +   +       +V   
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQ 255
           +G TV L C+A G P PTI WRR +   ++     ++ N IL+IPN  + D G+Y CVA+
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 278
Query: 256 NGVGRGM-KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI 314
           N  G+ + K  +    +   V  IN      A++     EC     P P   W+K+G  +
Sbjct: 279 NSRGKNVAKGQLTFYAQPNWVQIINDIH--VAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
           +      +            +L +  +     G Y C A NK+G
Sbjct: 337 LTRDRIQIEQ---------GTLNITIVNLSDAGMYQCVAENKHG 371

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AALSTGGSIYR 233
           E + + P I +   T   +V E  T    C    +P P ISW R+        T  SI  
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVAT--FMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 234 -GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL--QYD 290
            G +L I ++  +D G Y C A NGVG  ++   A++V+  P IT  RP     +     
Sbjct: 60  NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT--RPPINVKIIEGLK 117
Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
           A+L C     P P++ WIK    +  N   +V            SLR+  +++   GQY 
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSALRENSRIAV--------LESGSLRIHNVQKEDAGQYR 169
Query: 351 CKAANKYGSA-----QKEIELF 367
           C A N  G+A     + E+E+F
Sbjct: 170 CVAKNSLGTAYSKLVKLEVEVF 191

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 28/244 (11%)
Query: 137 TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
            D ++ST  L+I      DAGIYKC V      +  A V + + +  ++  N+       
Sbjct: 57  NDDDSST--LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-LMFKNAPTPQEFK 113
Query: 197 EGQTVYLYCYANGFPAPTISWR---RDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
           EG+   + C       PTI W+   RD          +   N L+I  I KTD GTY C 
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 254 AQNGVGRGMKRNIAVEVEFAPV-ITINRPRQGQALQ----------YDAILECHVEAYPP 302
                GR + R    E+ F  + + +N P   QA Q              L C  + +P 
Sbjct: 174 -----GRILARG---EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPE 225
Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
           P + W KDG  I N +     H   SD+ S+ ++R   +++    +Y C A NK G    
Sbjct: 226 PTMSWTKDGEPIENEEEDDEKHI-FSDDSSELTIR--NVDKNDEAEYVCIAENKAGEQDA 282
Query: 363 EIEL 366
            I L
Sbjct: 283 SIHL 286

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 145/340 (42%), Gaps = 37/340 (10%)
Query: 31  FIHEVTGEKV----TSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDI 86
           FIH V   ++     S +  +  S + P    + S  ++L+  +  P            +
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 87  AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            ++   KC V       + W K +  +++ P               +++T    T+T  L
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDN--REIRP------------GGNYKMTLVENTAT--L 255
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
           ++ ++ + DAG Y C    ++  K S   +L V+ PP        S IV + +     C 
Sbjct: 256 TVLKVTKGDAGQYTC-YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 207 ANGFPAPTISWRRDNSAALSTGGSIYRGN------ILKIPNITKTDRGTYYCVAQNGVGR 260
             G P   + W +D +    +  S +R +      +L++ N++  D G Y C A N  G 
Sbjct: 315 IGGSPEIKVLWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 372
Query: 261 GMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQH 319
               + +++V+  PV    +P   + L+  D  LEC ++  PP  + W KD  ++ + + 
Sbjct: 373 -ASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 430
Query: 320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
           Y +     S+ F  TS+ ++ ++    G+Y CKA+N  GS
Sbjct: 431 YKI----MSENFL-TSIHILNVDSADIGEYQCKASNDVGS 465

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 35/277 (12%)
Query: 93  KCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152
           +C +  + +  V+W K +T               I   S+F+++     S  +L +  + 
Sbjct: 312 ECKIGGSPEIKVLWYKDETE--------------IQESSKFRMSF--VESVAVLEMYNLS 355
Query: 153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA 212
             D+G Y CE   +     S+   L V+ PP+        V   +G  V+L C   G P 
Sbjct: 356 VEDSGDYTCEAH-NAAGSASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPP 413
Query: 213 PTISWRRDNSAALSTGGS--IYRGNIL---KIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267
             +SW +D    L +G    I   N L    I N+   D G Y C A N VG       +
Sbjct: 414 FQVSWHKDKRE-LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVG-S 471
Query: 268 VEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM---NNQHYSVSH 324
           + ++  P            +  +  L+  +E   P ++ W KD  +I+   +N   S S 
Sbjct: 472 ITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE 531
Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
              + +FS         E    G+Y C+  N+ G+ +
Sbjct: 532 NIATLQFSRA-------EPANAGKYTCQIKNEAGTQE 561

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 15/190 (7%)
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNI--LKIPNITKTDRGTYYCV 253
           G+ + L C  +G P   I+W ++++   S       ++ N+  L I  +  +D G Y C 
Sbjct: 20  GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCK 79
Query: 254 AQNGVGRGMKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG 311
           A+N VG      + V  E +  P          + L +    EC +    P  + W KDG
Sbjct: 80  AENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDG 139
Query: 312 VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371
             + ++     ++  TS   +  +L+++  ++   GQY C A+N  G+A    +L    T
Sbjct: 140 ELLKDD-----ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL----T 190
Query: 372 QTGDETFPIF 381
            +  E  P F
Sbjct: 191 LSEHEVPPFF 200

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 33/281 (11%)
Query: 86  IAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
           + ++   KC V       + W K +  +++ P               +++T    T+T  
Sbjct: 19  LGESGTFKCHVTGTAPIKITWAKDN--REIRP------------GGNYKMTLVENTAT-- 62
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC 205
           L++ ++ + DAG Y C    ++  K S   +L V+ PP        S IV + +     C
Sbjct: 63  LTVLKVTKGDAGQYTC-YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGN------ILKIPNITKTDRGTYYCVAQNGVG 259
              G P   + W +D +    +  S +R +      +L++ N++  D G Y C A N  G
Sbjct: 122 KIGGSPEIKVLWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 260 RGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQ 318
                + +++V+  PV    +P   + L+  D  LEC ++  PP  + W KD  ++ + +
Sbjct: 180 S-ASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 237
Query: 319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
            Y +     S+ F  TS+ ++ ++    G+Y CKA+N  GS
Sbjct: 238 KYKI----MSENFL-TSIHILNVDSADIGEYQCKASNDVGS 273

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNI 236
           PP   D    SV ++ G++    C+  G     I+W +DN   +  GG+     +     
Sbjct: 5   PPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTAT 62
Query: 237 LKIPNITKTDRGTYYCVAQNGVGR---GMKRNIAVEVEFAPVITINR-PRQGQALQYDAI 292
           L +  +TK D G Y C A N  G+     +  +     F   +  +R  +Q +  +Y   
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY--- 119
Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
            EC +   P   ++W KD  +I  +  + +S        S   L +  +     G Y C+
Sbjct: 120 -ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGDYTCE 173
Query: 353 AAN 355
           A N
Sbjct: 174 AHN 176

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 28/234 (11%)
Query: 146 LSIKEIQETDAGIYKC----------EVIISLNNKVSAEVELIVRRPPIISDNSTRSVIV 195
           L I + + +D G Y C          + + S  +++S   E   +  P I          
Sbjct: 160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYA 219
Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ 255
             GQ V L C+A G P P I WR+ + +   T   +    +L I N+   D GTY C A+
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAE 277
Query: 256 NGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV 312
           N  GR   +    I  + ++  VIT      G  L++     C     P PA+ W++DG 
Sbjct: 278 NIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWS----CVASGKPRPAVRWLRDGQ 333
Query: 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            + +             E S   LR   +     G Y C A NK+G+     EL
Sbjct: 334 PLASQNRI---------EVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 33/281 (11%)
Query: 86  IAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
           + ++   KC V       + W K +  +++ P               +++T    T+T  
Sbjct: 19  LGESGTFKCHVTGTAPIKITWAKDN--REIRP------------GGNYKMTLVENTAT-- 62
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC 205
           L++ ++ + DAG Y C    ++  K S   +L V+ PP        S IV + +     C
Sbjct: 63  LTVLKVTKGDAGQYTC-YASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGN------ILKIPNITKTDRGTYYCVAQNGVG 259
              G P   + W +D +    +  S +R +      +L++ N++  D G Y C A N  G
Sbjct: 122 KIGGSPEIKVLWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 260 RGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQ 318
                + +++V+  PV    +P   + L+  D  LEC ++  PP  + W KD  ++ + +
Sbjct: 180 S-ASSSTSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 237
Query: 319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
            Y +     S+ F  TS+ ++ ++    G+Y CKA+N  GS
Sbjct: 238 KYKI----MSENFL-TSIHILNVDSADIGEYQCKASNDVGS 273

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNI 236
           PP   D    SV ++ G++    C+  G     I+W +DN   +  GG+     +     
Sbjct: 5   PPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTAT 62
Query: 237 LKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEFAPVITINRPRQGQALQYD--AIL 293
           L +  +TK D G Y C A N  G+      + V+   AP   I +    + ++ D     
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---APPRFIKKLEPSRIVKQDEHTRY 119
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
           EC +   P   ++W KD  +I  +  + +S        S   L +  +     G Y C+A
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGDYTCEA 174
Query: 354 AN 355
            N
Sbjct: 175 HN 176

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 139/352 (39%), Gaps = 61/352 (17%)
Query: 30  FFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQT 89
             I +   E     + +   SV G S+   L+    L++    PT       Q  D  + 
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRP 360
Query: 90  ADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149
           A   C         V WMK               G  I H            S  +L I+
Sbjct: 361 AVFTCQYTGNPIKTVSWMK--------------DGKAIGH------------SESVLRIE 394
Query: 150 EIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN 208
            +++ D G+Y+C V     + + SAE++L  R  P +   + +   +  G +V+L C A 
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG 454
Query: 209 GFPAPTISWRRD-----NSAALSTGGSI-YRGNILKIPNITK---TDRGTYYCVAQNGVG 259
           G P P ISW  D     N+     G  +   G+++   NIT     D G Y C+A++ VG
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 260 RGMKRNIAVEVEFAPVITINRPR---QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316
              + +  + V   P I     +    G+ L    I+ C V  YP  +IVW +D   +  
Sbjct: 515 VA-EHSAKLNVYGLPYIRQMEKKAIVAGETL----IVTCPVAGYPIDSIVWERDNRALPI 569
Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERR-QFGQYACKAANKYG-SAQKEIEL 366
           N+   V        F + +L +  +ER      Y C A N+ G SA+  +E+
Sbjct: 570 NRKQKV--------FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEV 613

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 24/230 (10%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAE-VELIVR-RPPIISDNSTRSVIVSEGQTVYL 203
           L IK+    D+G Y C V    NN V  E VE ++    P+ +     +  V  G+    
Sbjct: 308 LIIKDAVVEDSGKYLCVV----NNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF 363
Query: 204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263
            C   G P  T+SW +D  A        +  ++L+I ++ K D+G Y C  +N      +
Sbjct: 364 TCQYTGNPIKTVSWMKDGKAIG------HSESVLRIESVKKEDKGMYQCFVRND-----R 412
Query: 264 RNIAVEVEFAPVITINRPRQGQALQYDAI-------LECHVEAYPPPAIVWIKDGVQIMN 316
            +     E       + P   QA Q + +       L+C     P P I W  DG +I N
Sbjct: 413 ESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472
Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           N  Y V  + T +    + L + ++     G Y C A +K G A+   +L
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257
           GQ V L C+A G P P I WR+ +  +LS   +      L+IP+++  D GTY C A+N 
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVD-GSLSPQWTTAE-PTLQIPSVSFEDEGTYECEAENS 278
Query: 258 VGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI 314
            GR   +    +  + E+  VI+      G  L++     C     P P + W+++G  +
Sbjct: 279 KGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWG----CAAAGKPRPTVRWLRNGEPL 334
Query: 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +     V   A    FS  SL          G Y C A NK+G+     EL
Sbjct: 335 ASQNRVEV--LAGDLRFSKLSL-------EDSGMYQCVAENKHGTIYASAEL 377

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG------SIYRGNI-LKIPNIT 243
           +SV+V EG T     + +GFP P +SW RD    +ST        S   G   L IP +T
Sbjct: 13  QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQ-VISTSTLPGVQISFSDGRAKLTIPAVT 71
Query: 244 KTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINR-----PRQGQALQYDAILECHV 297
           K + G Y   A NG G+      + V+ E AP   + R      RQG  ++    L+  V
Sbjct: 72  KANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVR----LQVRV 127
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
              P P + + +DG +I ++  + +S      E    SL +        G Y+  A N  
Sbjct: 128 TGIPTPVVKFYRDGAEIQSSLDFQISQ-----EGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 358 GSAQKEIELF 367
           G A    EL 
Sbjct: 183 GRATSTAELL 192

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG------SIYRGNI-LKIPNIT 243
           +SV+V EG T     + +GFP P +SW RD    +ST        S   G   L IP +T
Sbjct: 13  QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQ-VISTSTLPGVQISFSDGRAKLTIPAVT 71
Query: 244 KTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINR-----PRQGQALQYDAILECHV 297
           K + G Y   A NG G+      + V+ E AP   + R      RQG  ++    L+  V
Sbjct: 72  KANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVR----LQVRV 127
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
              P P + + +DG +I ++  + +S      E    SL +        G Y+  A N  
Sbjct: 128 TGIPTPVVKFYRDGAEIQSSLDFQISQ-----EGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 358 GSAQKEIELF 367
           G A    EL 
Sbjct: 183 GRATSTAELL 192

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNIL---KIPNITK 244
           ++V + +   L C   G P PTI W +D     +     +R     G +     +    +
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILECH-VEAYPP 302
            D G Y+CVA+N VG+ + R+ ++++          P+  +  + + A+LEC   +  P 
Sbjct: 79  QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE 138
Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
           P ++WIKDGV + + +  S    +        +L +  +E    G Y C A N  G+ +
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNIL---KIPNITK 244
           ++V + +   L C   G P PTI W +D     +     +R     G +     +    +
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILECH-VEAYPP 302
            D G Y+CVA+N VG+ + R+ ++++          P+  +  + + A+LEC   +  P 
Sbjct: 79  QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE 138
Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
           P ++WIKDGV + + +  S    +        +L +  +E    G Y C A N  G+ +
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 6/189 (3%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN--ILKI 239
           P I     + +     G+ +   C A+G P P ISW R+          I +G+   L +
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA 299
            NI  +D G Y C A N  G   K+   ++V   P I I    +         L C  E 
Sbjct: 63  RNIINSDGGPYVCRATNKAGEDEKQAF-LQVFVQPHI-IQLKNETTYENGQVTLVCDAEG 120
Query: 300 YPPPAIVWIK--DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
            P P I W +  DG                  +   +SL +  ++    G+Y C+AA++ 
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 358 GSAQKEIEL 366
           G  QK + L
Sbjct: 181 GGHQKSMYL 189

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 30/223 (13%)
Query: 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI----VSEGQTVYLYCYANGF 210
           DAGIY+C+   +      A V L      I    + R V+      +G+   + C  +  
Sbjct: 71  DAGIYRCQATDAKGQTQEATVVL-----EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS 125
Query: 211 PAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQ-NGVGRGMKRNI 266
           PAP +SW   N    +      ++   N L+I NI K+D G Y C  +    G    R+I
Sbjct: 126 PAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 185
Query: 267 AVEVEFAPVITINR------PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
            V V   P I++ +        +G+ + +     C     P PAI W ++G  I  N+ Y
Sbjct: 186 IVIVNVPPAISMPQKSFNATAERGEEMTFS----CRASGSPEPAISWFRNGKLIEENEKY 241
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
            +         S+T L V  I     G Y C+A NK G  +K+
Sbjct: 242 ILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 277

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA------------LSTGG 229
           PP I ++ +  +IVS+G+   L C A G P PTI W +                 L   G
Sbjct: 9   PPRIVEHPS-DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 230 SIYRGNILKIPNITKT--DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ-- 285
           S++    L+I +  K+  D G Y CVA+N +G  +  + ++EV     I  +  RQ    
Sbjct: 68  SLF---FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV----AILRDDFRQNPSD 120
Query: 286 ---ALQYDAILECH-VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
              A+   A++EC     +P P I W KDG   ++++   ++            L +   
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDG-SPLDDKDERIT-------IRGGKLMITYT 172
Query: 342 ERRQFGQYACKAANKYGSAQKEI 364
            +   G+Y C   N  G  + E+
Sbjct: 173 RKSDAGKYVCVGTNMVGERESEV 195

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 24/226 (10%)
Query: 157 GIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTI 215
           G Y+C         +S  + L V + P+    +   V+V EG  + L C    G P+P I
Sbjct: 90  GEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVI 149
Query: 216 SWRRDNSAALSTGGSIYRGN--ILKIPNITKTDRGT-YYCVAQNGVGRGM--KRNIAVEV 270
            W   +   ++    + +G+   L   N+   D  T Y C A+      +  K    ++V
Sbjct: 150 FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 271 EFAPVITINRPR----QGQALQ------YDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
                +    P     QG A         D +LEC     P P I W K G  + +++  
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK-- 267
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                A  + F + +LR+  +     G+Y C A+NK GS +  I +
Sbjct: 268 -----AKFENF-NKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 89/237 (37%), Gaps = 33/237 (13%)
Query: 146 LSIKEIQETDA-GIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSE----- 197
           L I+E+   D    Y+C     L    ++SA    +V   PI S       +V +     
Sbjct: 172 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 231
Query: 198 -GQTVYLYCYANGFPAPTISW-------RRDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
              T+ L C A GFPAP+  W        R  +  L+       G ++ I +    D G 
Sbjct: 232 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI-IKDAVVEDSGK 290
Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK 309
           Y CV  N VG G      + V       I+ P Q       A+  C     P   + W+K
Sbjct: 291 YLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 349
Query: 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           DG  I +               S++ LR+ ++++   G Y C   N   SA+   EL
Sbjct: 350 DGKAIGH---------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 89/237 (37%), Gaps = 33/237 (13%)
Query: 146 LSIKEIQETDA-GIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSE----- 197
           L I+E+   D    Y+C     L    ++SA    +V   PI S       +V +     
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 225
Query: 198 -GQTVYLYCYANGFPAPTISW-------RRDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
              T+ L C A GFPAP+  W        R  +  L+       G ++ I +    D G 
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI-IKDAVVEDSGK 284
Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK 309
           Y CV  N VG G      + V       I+ P Q       A+  C     P   + W+K
Sbjct: 285 YLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343
Query: 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           DG  I +               S++ LR+ ++++   G Y C   N   SA+   EL
Sbjct: 344 DGKAIGH---------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 197 EGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGNI----------LKIPNITKT 245
           E   V L C A G P P I+W+R  +    + G     G I          L I ++  +
Sbjct: 14  ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI----TINRPRQGQALQYDAILECHVEAYP 301
           D G Y C A + +G G ++++ +++E+AP      TI    +G  +     + C V++ P
Sbjct: 74  DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN----ISCDVKSNP 128
Query: 302 PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
           P +I W +D + +      ++  ++T  +     L +       FG+Y C A N  G+  
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRKM---ILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 362 KE 363
           +E
Sbjct: 186 QE 187

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 197 EGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGNI----------LKIPNITKT 245
           E   V L C A G P P I+W+R  +    + G     G I          L I ++  +
Sbjct: 14  ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI----TINRPRQGQALQYDAILECHVEAYP 301
           D G Y C A + +G G ++++ +++E+AP      TI    +G  +     + C V++ P
Sbjct: 74  DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN----ISCDVKSNP 128
Query: 302 PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
           P +I W +D + +      ++  ++T  +     L +       FG+Y C A N  G+  
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRKM---ILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 362 KE 363
           +E
Sbjct: 186 QE 187

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
           +G  +  +   ++T    TS   L  K     D G+Y CEV   +       ++L V   
Sbjct: 249 NGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
           P       + ++V +GQ V + C   G PAP + W   N+  LS G +    + L I  +
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGV 367
Query: 243 TKTDRGTYYCVAQNGVG 259
              D+G Y C A N  G
Sbjct: 368 KNGDKGYYGCRATNEHG 384

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 96/257 (37%), Gaps = 46/257 (17%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR-PPIIS 186
           + D   ++T  P+ + Y   +   +E  + IYK  V  + N  V  EV L+      +  
Sbjct: 148 VTDFDRRITAGPDGNLYFTIV--TKEDVSDIYKY-VCTAKNAAVDEEVVLVEYEIKGVTK 204
Query: 187 DNS-----------TRSVIVSEGQTVYLYCYANGFPAPTISWRRD------NSAALSTGG 229
           DNS           ++ ++   G    +YC     P    ++ ++      N     T  
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH 264
Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP--------VITINRP 281
           +   G  L        D G Y C   NGVG+  K ++ + V  AP        VI +   
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVV--- 321
Query: 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
           +QGQ    D  + C V   P P +VW           H +          +D+ L +  +
Sbjct: 322 KQGQ----DVTIPCKVTGLPAPNVVW----------SHNAKPLSGGRATVTDSGLVIKGV 367
Query: 342 ERRQFGQYACKAANKYG 358
           +    G Y C+A N++G
Sbjct: 368 KNGDKGYYGCRATNEHG 384

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 32/196 (16%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS---------AALSTGGSIY 232
           P II     + V V  G     YC A G P P+I WR++             L   G I 
Sbjct: 7   PEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI- 63
Query: 233 RGNILKI-PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA-------PVITINRPRQG 284
             +IL+I P     D   Y CVA+NGVG  +  +  + +          PVIT     + 
Sbjct: 64  --SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 285 QALQYDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIER 343
             + +  ++ C     P P I WIK+  ++ M+N  YS           D  L++     
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---------LKDGFLQIENSRE 172
Query: 344 RQFGQYACKAANKYGS 359
              G+Y C A N  G+
Sbjct: 173 EDQGKYECVAENSMGT 188

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 32/196 (16%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS---------AALSTGGSIY 232
           P II     + V V  G     YC A G P P+I WR++             L   G I 
Sbjct: 9   PEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI- 65
Query: 233 RGNILKI-PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA-------PVITINRPRQG 284
             +IL+I P     D   Y CVA+NGVG  +  +  + +          PVIT     + 
Sbjct: 66  --SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 123
Query: 285 QALQYDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIER 343
             + +  ++ C     P P I WIK+  ++ M+N  YS           D  L++     
Sbjct: 124 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---------LKDGFLQIENSRE 174
Query: 344 RQFGQYACKAANKYGS 359
              G+Y C A N  G+
Sbjct: 175 EDQGKYECVAENSMGT 190

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISW---RRDNSAALSTGGSIYRGN--ILKIPNITKTDR 247
           + V    TV   C A G P P+ISW    R+       GG   R     L + ++  +DR
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 248 GTYYCVAQNGVGRGMKRNIAVEV----EFAPVITINRP-RQGQALQYDAILECHVEAYPP 302
           G Y CV +N  G  +++   ++V       P++    P  Q   L  D    C V +   
Sbjct: 85  GNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ 143
Query: 303 PAIVWIK----DGVQIMNNQHYSVS---HFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
           P I W+K    +G ++  +    V+    + +    +D  LR+  +  R  G+Y C+A N
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 356 KYGSAQKEIEL 366
             G A+K   L
Sbjct: 204 FIGVAEKAFWL 214

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCV 253
           +G+   + C  +  PAP +SW   N    +      ++   N L+I NI K+D G Y C 
Sbjct: 16  QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Query: 254 AQ-NGVGRGMKRNIAVEVEFAPVITINR------PRQGQALQYDAILECHVEAYPPPAIV 306
            +    G    R+I V V   P I++ +        +G+ + +     C     P PAI 
Sbjct: 76  GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS----CRASGSPEPAIS 131
Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
           W ++G  I  N+ Y +         S+T L V  I     G Y C+A NK G  +K+
Sbjct: 132 WFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 174 EVELIVRRPPII-SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI- 231
           ++++IV  PP + +  ST +   +  Q+V L C A+GFP PT++W +D            
Sbjct: 3   DIQVIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEK 62
Query: 232 ----YRGNILKIPNITKTDRGTYYCVAQNGVGR 260
               Y G+ L I  + K+D   Y C+A+N  G 
Sbjct: 63  YSFNYDGSELIIKKVDKSDEAEYICIAENKAGE 95

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 27/203 (13%)
Query: 68  SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI 127
            S   P    + ++Q       A   C         + WMK    KK             
Sbjct: 3   GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMK--KGKK------------- 47
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNN-KVSAEVELIVRRP--- 182
           +   RF++    + +  +L I+ ++ + D  IY+C    SL     SA++ ++       
Sbjct: 48  VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPS 107
Query: 183 --PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD----NSAALSTGGSIYRGNI 236
             P I D   +  +V +G+T  + C A G P P ISW +D    + AA +      R   
Sbjct: 108 GFPTI-DMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGA 166
Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
           L+I +  ++D+G Y CVA N  G
Sbjct: 167 LQIESSEESDQGKYECVATNSAG 189

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISW-------RRDNSAALSTGGSIYR 233
           RP +   +  + + V    +  L C A  +P P+  W        R  +  L+       
Sbjct: 213 RPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVS 272
Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAIL 293
           G ++ I +    D G Y CV  N VG G      + V       I+ P Q       A+ 
Sbjct: 273 GTLI-IKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF 330
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
            C     P   + W+KDG  I +               S++ LR+ ++++   G Y C  
Sbjct: 331 TCQYTGNPIKTVSWMKDGKAIGH---------------SESVLRIESVKKEDKGMYQCFV 375
Query: 354 ANKYGSAQKEIEL 366
            N   SA+   EL
Sbjct: 376 RNDRESAEASAEL 388

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 112/290 (38%), Gaps = 44/290 (15%)
Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P+IS  + + ++D    A   C  +  D   + W+   +      LP+S          R
Sbjct: 113 PSISSNNSKPVEDKDAVA-FTCEPETQDATYLWWVNNQS------LPVS---------PR 156
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
            QL+    T    L++  +   D   YKCE    ++ + S  V L V   P     S  +
Sbjct: 157 LQLSNGNRT----LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLN 212
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYC 252
                G+ + L C+A   P    SW  + +   ST         L IPNIT  + G+Y C
Sbjct: 213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-------LFIPNITVNNSGSYTC 265
Query: 253 VAQN---GVGRGMKRNIAVEVE-FAPVITINRPRQGQALQYDAI-LECHVEAYPPPAIVW 307
            A N   G+ R     I V  E   P IT N          DA+ L C  E      + W
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSN--NSNPVEDEDAVALTCEPEIQNTTYLWW 323
Query: 308 IKDGVQIMNNQHYSVS-HFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
           +       NNQ   VS     S++  + +L ++++ R   G Y C   N+
Sbjct: 324 V-------NNQSLPVSPRLQLSND--NRTLTLLSVTRNDVGPYECGIQNE 364

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 43/238 (18%)
Query: 156 AGIYKCEVIISLNNKVSAEVELI---VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA 212
           + +YKCE +    NKV     +I   V R P I+      +  +E ++V L+C A+    
Sbjct: 525 SALYKCEAV----NKVGRGERVISFHVTRGPEITLQP--DMQPTEQESVSLWCTADRSTF 578
Query: 213 PTISWRRDNSAAL------------STGGSIYRGN------------ILKIPNITKTDRG 248
             ++W +     L                ++++ N            I+++ N +  D+G
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 249 TYYCVAQNGVGRGMK---RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI 305
            Y C+AQ+   +      R + V    AP IT N   Q  ++     + C     PPP I
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
           +W KD   ++ +     S     D   + ++R   + +   G Y C+A +  G A+ E
Sbjct: 699 MWFKDNETLVED-----SGIVLKDGNRNLTIR--RVRKEDEGLYTCQACSVLGCAKVE 749

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
           +G A ++D    C VE YP P ++W KD   +  ++H+ + +    DE  + SL +  + 
Sbjct: 55  EGSAARFD----CKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVC 106
Query: 343 RRQFGQYACKAANKYGSAQKEIELF 367
                +Y CKA N  G A    EL 
Sbjct: 107 GDDDAKYTCKAVNSLGEATCTAELL 131

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSI----YRGNI--LKIPNITKTDRGTYYCVAQN 256
           L C   G P P + W R     ++ G       ++G    L I ++T  D  T Y V   
Sbjct: 24  LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD-ATVYQVRAT 82
Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQG----QALQYDAI-LECHVEAYPPPAIVWIKDG 311
             G  +    ++EVE    I + +  +G     AL+ + + ++      P P I W K  
Sbjct: 83  NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 142
Query: 312 VQIMNNQHYSV--SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             I NN HY V  +   TS  F +       +ER+  G Y   A N++G  QK +EL
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNG------VERKDAGFYVVCAKNRFGIDQKTVEL 193

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
           +G A ++D    C VE YP P ++W KD   +  ++H+ + +    DE  + SL +  + 
Sbjct: 55  EGSAARFD----CKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVC 106
Query: 343 RRQFGQYACKAANKYGSAQKEIELF 367
                +Y CKA N  G A    EL 
Sbjct: 107 GDDDAKYTCKAVNSLGEATCTAELL 131

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSI----YRGNI--LKIPNITKTDRGTYYCVAQN 256
           L C   G P P + W R     ++ G       ++G    L I ++T  D  T Y V   
Sbjct: 22  LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD-ATVYQVRAT 80
Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQG----QALQYDAI-LECHVEAYPPPAIVWIKDG 311
             G  +    ++EVE    I + +  +G     AL+ + + ++      P P I W K  
Sbjct: 81  NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 140
Query: 312 VQIMNNQHYSV--SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             I NN HY V  +   TS  F +       +ER+  G Y   A N++G  QK +EL
Sbjct: 141 DLIDNNGHYQVIVTRSFTSLVFPNG------VERKDAGFYVVCAKNRFGIDQKTVEL 191

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
           L+  D + Q  ++ +     L+I  +  +D G+Y C     L  K ++    +  +P + 
Sbjct: 142 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 201
Query: 186 SDNSTRSVI-VSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK 244
             +   S++  + G+ V +     G+P P I W + N   L +  +I  G++L I  +++
Sbjct: 202 FGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSE 260
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ--------ALQYDA--ILE 294
            D G Y  +  N + +  + ++   V + P      P+ G+        + QY     L 
Sbjct: 261 RDTGNYTVILTNPISKEKQSHVVSLVVYVP------PQIGEKSLISPVDSYQYGTTQTLT 314
Query: 295 CHVEAYPPP 303
           C V A PPP
Sbjct: 315 CTVYAIPPP 323

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECH 296
           L I  +T++D+G Y C A +G+    K +  V V   P +       G     +A +   
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVHEKPFVAFG---SGMESLVEATVGER 217
Query: 297 VE------AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
           V        YPPP I W K+G+ + +N      H  T  E S+
Sbjct: 218 VRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSE 260

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISW---RRDNSAALSTGGSIYRGN--ILKIPNITKTDR 247
           + V    TV   C A G P P+ISW    R+       GG   R     L + ++  +DR
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192
Query: 248 GTYYCVAQNGVGRGMKRNIAVEV----EFAPVITINRP-RQGQALQYDAILECHVEAYPP 302
           G Y CV +N  G  +++   ++V       P++    P  Q   L  D    C V +   
Sbjct: 193 GNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ 251
Query: 303 PAIVWIK----DGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIERRQF---GQYACKAA 354
           P I W+K    +G ++  +    V+   T+    +D  L V+++    F   G+Y C A 
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Query: 355 NKYG 358
           N  G
Sbjct: 312 NSIG 315

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSI----YRGNI--LKIPNITKTDRGTYYCVAQN 256
           L C   G P P + W R     ++ G       ++G    L I ++T  D  T Y V   
Sbjct: 24  LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD-ATVYQVRAT 82
Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQG----QALQYDAI-LECHVEAYPPPAIVWIKDG 311
             G  +    ++EVE    I + +  +G     AL+ + + ++      P P I W K  
Sbjct: 83  NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 142
Query: 312 VQIMNNQHYSV--SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             I NN HY V  +   TS  F +       +ER+  G Y   A N++G  QK +EL
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNG------VERKDAGFYVVCAKNRFGIDQKTVEL 193

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNN-KVSAEVELIVRR--PP 183
           +   RF++    + +  +L I+ ++ + D  IY+C    SL     SA++ ++     PP
Sbjct: 47  VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPP 106
Query: 184 IIS--DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD---NSAALSTGG-SIYRGNIL 237
                D   +  +V + +T  + C A G P P ISW +D      A S G     R   L
Sbjct: 107 GFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGAL 166
Query: 238 KIPNITKTDRGTYYCVAQNGVG 259
           +I +  ++D+G Y CVA N  G
Sbjct: 167 QIESSEESDQGKYECVATNSAG 188

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNILKI-PNITKTDRGTYY 251
           G      C A G P P I+W +      S    +       G++L+I P   + D   Y 
Sbjct: 21  GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYE 80
Query: 252 CVAQNGVGR---GMKRNIAVEVEFAPVI-TINRPRQGQALQ--YDAILECHVEAYPPPAI 305
           C A N +G      K ++  E +  P   +I+   Q + ++    A + C     P P I
Sbjct: 81  CTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEI 140
Query: 306 VWIKDGVQIMNNQHYSVSHFATSD----EFSDTSLRVITIERRQFGQYACKAANKYGS 359
            W KD + +           ATS+    +    +L++ + E    G+Y C A N  G+
Sbjct: 141 SWFKDFLPV---------DPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 189

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNKVSAEVELIVRR----P 182
           ++  RF+     E++  +L I+ ++   D  IY+C V  + + +V+   +L V R    P
Sbjct: 47  VNSQRFETIEFDESAGAVLRIQPLRTPRDENIYEC-VAQNPHGEVTVHAKLTVLREDQLP 105
Query: 183 PIIS--DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD--NSAALSTGGSI--YRGNI 236
           P     D   +  +V   +T  + C A+G P P I+W +D       ++ G I   R   
Sbjct: 106 PGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGG 165
Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
           L+I +  +TD+G Y CVA N  G
Sbjct: 166 LQIESSEETDQGKYECVASNSAG 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 26/193 (13%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD----NSAALST------GGSI 231
           PP+        + VS G   ++ C A G P P ++W +     NS    T       G++
Sbjct: 6   PPVFIKKPVDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVGR---GMKRNIAVEVEFAPVI-TINRPRQGQAL 287
            R   L+ P     D   Y CVAQN  G      K  +  E +  P    I+   Q + +
Sbjct: 65  LRIQPLRTPR----DENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVV 120
Query: 288 Q--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
           +    A + C     P P I W KD + +      S S+     +     L++ + E   
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPV----DPSTSN-GRIKQLRSGGLQIESSEETD 175
Query: 346 FGQYACKAANKYG 358
            G+Y C A+N  G
Sbjct: 176 QGKYECVASNSAG 188

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 146 LSIKEIQETDAGIYKCEVI-ISLNNKVSAEVELIVRRPPIISDNSTRSVIVS-------E 197
           L I  ++ +D G Y C V   S+   V ++   ++  P   +      ++V         
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257
           GQ V L C+A G P P I WR+      ST      G +LKI NI   D G Y C A+N 
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 258 VGR 260
            G+
Sbjct: 188 RGK 190

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI 305
           D G Y+CV         K N  +EV+ AP IT ++  + +    DA++ C    YP P  
Sbjct: 67  DSGEYHCVYH--FVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQYACKAANKYGSA 360
           +W K    +      S   F   ++ + T L ++ ++     G+Y C A N  GSA
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA 180

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWR---RDNSAALSTGGSI---YRGNILKIP------ 240
           V + E   V L C  +GF +P + W+    D +  +     I   Y   +  +P      
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73
Query: 241 NITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILEC-HV 297
           ++T+ D GTY C V++ G     +  + + V   P   T+N P     +   A+L C   
Sbjct: 74  SVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSA-TIGNRAVLTCSEQ 132
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI--TIERRQFGQYACKAAN 355
           +  PP    W KDG+ +  N   + +   +S   + T+  ++   +     G+Y+C+A N
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 356 KYGS 359
            YG+
Sbjct: 193 GYGT 196

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
           R+GQ    D I+   V+  P P + W+++   +  +Q      FA   E     LR++  
Sbjct: 18  REGQ----DVIMSIRVQGEPKPVVSWLRNRQPVRPDQR----RFAEEAEGGLCRLRILAA 69
Query: 342 ERRQFGQYACKAANKYGSAQKEIEL 366
           ER   G Y CKA N+YG+ Q E  L
Sbjct: 70  ERGDAGFYTCKAVNEYGARQCEARL 94

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 185 ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISW---RRDNSAALSTGG-SIYRGNILKIP 240
           I D   + V V EG TV   C A+G P P I W   R+   +A S G  +++    L++ 
Sbjct: 387 IRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVR 446
Query: 241 NITKTDRGTYYCVAQNGVG 259
                D GTY C+A N  G
Sbjct: 447 YAQVQDNGTYLCIAANAGG 465

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 87  AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            Q   L CSV+  ++  + W+K               G+++ +  +  +    +     L
Sbjct: 17  GQPVKLNCSVEGXEEPDIQWVK--------------DGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
           S+K ++ +DAG Y C+V      ++S  V L V   P  +    + + V       L C 
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP-KDLAVPPNAPFQLSCE 121
Query: 207 ANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
           A G P P TI W R  +     GG     ++L +  +T++    + C A N  G    R 
Sbjct: 122 AVGPPEPVTIVWWRGTT---KIGGPAPSPSVLNVTGVTQST--XFSCEAHNLKGLASSRT 176
Query: 266 IAVEVE 271
             V ++
Sbjct: 177 ATVHLQ 182

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG-------NILKIPNITKT 245
           + VS+GQ V L C   G   P I W +D  A +     +Y           L + ++ ++
Sbjct: 12  LTVSQGQPVKLNCSVEGXEEPDIQWVKDG-AVVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-- 303
           D G Y+C  ++G    + + + + VE  P  T+  P+   A+  +A  +   EA  PP  
Sbjct: 71  DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTV-EPKD-LAVPPNAPFQLSCEAVGPPEP 128
Query: 304 -AIVWIKDGVQI 314
             IVW +   +I
Sbjct: 129 VTIVWWRGTTKI 140

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQE-TDAGIYKC-------EVIISLNNKVSAEVELIV 179
           ++  RF+     E++  +L I+ ++   D  +Y+C       E+ +     V  E +L  
Sbjct: 47  VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS 106
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD----NSAALSTGGSIYRGN 235
             P I  D   +  +V   +T  + C A+G P P I+W +D    + +A +      R  
Sbjct: 107 GFPNI--DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG 164
Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
            L+I +  +TD+G Y CVA N  G
Sbjct: 165 ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 67/186 (36%), Gaps = 43/186 (23%)
Query: 198 GQTVYLYCYANGFPAPTISWRRD----NSAALST------GGSIYRGNILKIPNITKTDR 247
           G      C A G P P ++W +     NS    T       G++ R   L+ P     D 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR----DE 76
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ----------GQALQ-----YDAI 292
             Y CVAQN VG         E+     +T+ R  Q          G  L+       A 
Sbjct: 77  NVYECVAQNSVG---------EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           + C     P P I W KD + +      S S+     +    +L++ + E    G+Y C 
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV----DPSASN-GRIKQLRSGALQIESSEETDQGKYECV 182
Query: 353 AANKYG 358
           A N  G
Sbjct: 183 ATNSAG 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQE-TDAGIYKC-------EVIISLNNKVSAEVELIV 179
           ++  RF+     E++  +L I+ ++   D  +Y+C       E+ +     V  E +L  
Sbjct: 47  VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS 106
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD----NSAALSTGGSIYRGN 235
             P I  D   +  +V   +T  + C A+G P P I+W +D    + +A +      R  
Sbjct: 107 GFPNI--DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG 164
Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
            L+I +  +TD+G Y CVA N  G
Sbjct: 165 ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 67/186 (36%), Gaps = 43/186 (23%)
Query: 198 GQTVYLYCYANGFPAPTISWRRD----NSAALST------GGSIYRGNILKIPNITKTDR 247
           G      C A G P P ++W +     NS    T       G++ R   L+ P     D 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR----DE 76
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ----------GQALQ-----YDAI 292
             Y CVAQN VG         E+     +T+ R  Q          G  L+       A 
Sbjct: 77  NVYECVAQNSVG---------EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           + C     P P I W KD + +      S S+     +    +L++ + E    G+Y C 
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV----DPSASN-GRIKQLRSGALQIESSEETDQGKYECV 182
Query: 353 AANKYG 358
           A N  G
Sbjct: 183 ATNSAG 188

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQE-TDAGIYKC-------EVIISLNNKVSAEVELIV 179
           ++  RF+     E++  +L I+ ++   D  +Y+C       E+ +     V  E +L  
Sbjct: 47  VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS 106
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD----NSAALSTGGSIYRGN 235
             P I  D   +  +V   +T  + C A+G P P I+W +D    + +A +      R  
Sbjct: 107 GFPNI--DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG 164
Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
            L+I +  +TD+G Y CVA N  G
Sbjct: 165 ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 67/186 (36%), Gaps = 43/186 (23%)
Query: 198 GQTVYLYCYANGFPAPTISWRRD----NSAALST------GGSIYRGNILKIPNITKTDR 247
           G      C A G P P ++W +     NS    T       G++ R   L+ P     D 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR----DE 76
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ----------GQALQY-----DAI 292
             Y CVAQN VG         E+     +T+ R  Q          G  L+       A 
Sbjct: 77  NVYECVAQNSVG---------EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           + C     P P I W KD + +      S S+     +    +L++ + E    G+Y C 
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV----DPSASN-GRIKQLRSGALQIESSEETDQGKYECV 182
Query: 353 AANKYG 358
           A N  G
Sbjct: 183 ATNSAG 188

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 19/188 (10%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWR--RDNSAALSTGGS----------IYRGNILKIP 240
           V V E +++ L C  +GF +P + W+  + ++ AL    S           +  + +   
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70
Query: 241 NITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILEC-HV 297
           ++T+ D G Y C V++ G     + +I + V   P   TI+ P     +   A+L C   
Sbjct: 71  SVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSS-VTIGNRAVLTCSEH 129
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD---TSLRVITIERRQFGQYACKAA 354
           +  PP    W KDG+ ++         F  S    D     L    +     G+Y C+A 
Sbjct: 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 355 NKYGSAQK 362
           N YG+A +
Sbjct: 190 NGYGTAMR 197

>pdb|1CR9|L Chain L, Crystal Structure Of The Anti-Prion Fab 3f4 Length = 219

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 14/195 (7%)
Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSAALSTGG 229
           + + + +P  IS  S++S++ S+G+T  ++ +     +P      +S R        TG 
Sbjct: 11  LSVTIGQPASISCKSSQSLLDSDGKTYLIWVFQRPGQSPKRLIFLVSKRDSGVPDRFTGS 70
Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQ----NGVGRGMKRNIAVEVEFAPVITINRPRQGQ 285
                  LKI  +   D G YYC       + VG G K  IA   + AP ++I  P   Q
Sbjct: 71  GSGTDFTLKISRVEAEDVGVYYCWQGTHFPHTVGGGTKLEIA-RADAAPTVSIFPPSSEQ 129
Query: 286 ALQYDAILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITI- 341
                A + C +  + P  I   W  DG +  N    S +   + D  +S +S   +T  
Sbjct: 130 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKD 189
Query: 342 ERRQFGQYACKAANK 356
           E  +   Y C+A +K
Sbjct: 190 EYERHNSYTCEATHK 204

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 35/200 (17%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNI 236
           PP  +        VS G   ++ C A G P P I W +      +    +       G++
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFI-CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 237 LKI-PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ----------GQ 285
           L+I P  T  D   Y CVA N VG         E+  +  +T+ R  Q          G 
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVG---------EISVSTRLTVLREDQIPRGFPTIDMGP 115
Query: 286 ALQ-----YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVI 339
            L+       A + C     P P I W KD + +  +N +  +    +    S  +L++ 
Sbjct: 116 QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE---SIGALQIE 172
Query: 340 TIERRQFGQYACKAANKYGS 359
             E    G+Y C A N  G+
Sbjct: 173 QSEESDQGKYECVATNSAGT 192

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSA---ALSTGGSIYRGNILKI--PNITKTDRGT 249
           V   +TV   C ++G P PT+ W ++          GG   R     I   ++  +D+G 
Sbjct: 28  VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 250 YYCVAQNGVG---RGMKRNIAVEVEFAPVITINRP-RQGQALQYDAILECHVEAYPPPAI 305
           Y C+ +N  G      + ++       P++    P  +  AL  +    C V + P P I
Sbjct: 88  YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 306 VWIK----DGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIERRQF---GQYACKAANKY 357
            W+K    +G +I  +    V    T+    +D  + V+ +    F   G+Y C A N  
Sbjct: 148 QWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSI 207
Query: 358 G 358
           G
Sbjct: 208 G 208

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSA---ALSTGGSIYRGNILKI--PNITKTDRGT 249
           V   +TV   C ++G P PT+ W ++          GG   R     I   ++  +D+G 
Sbjct: 29  VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 250 YYCVAQNGVG---RGMKRNIAVEVEFAPVITINRP-RQGQALQYDAILECHVEAYPPPAI 305
           Y C+ +N  G      + ++       P++    P  +  AL  +    C V + P P I
Sbjct: 89  YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 148
Query: 306 VWIK----DGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIERRQF---GQYACKAANKY 357
            W+K    +G +I  +    V    T+    +D  + V+ +    F   G+Y C A N  
Sbjct: 149 QWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSI 208
Query: 358 G 358
           G
Sbjct: 209 G 209

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSA---ALSTGGSIYRGNILKI--PNITKTDRGT 249
           V   +TV   C ++G P PT+ W ++          GG   R     I   ++  +D+G 
Sbjct: 28  VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 250 YYCVAQNGVG---RGMKRNIAVEVEFAPVITINRP-RQGQALQYDAILECHVEAYPPPAI 305
           Y C+ +N  G      + ++       P++    P  +  AL  +    C V + P P I
Sbjct: 88  YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 306 VWIK----DGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIERRQF---GQYACKAANKY 357
            W+K    +G +I  +    V    T+    +D  + V+ +    F   G+Y C A N  
Sbjct: 148 QWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSI 207
Query: 358 G 358
           G
Sbjct: 208 G 208

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA------------LSTGG 229
           PP I ++ +  +IVS+G+   L C A G P PTI W +                 L   G
Sbjct: 9   PPRIVEHPS-DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 230 SIYRGNILKIPNITKT--DRGTYYCVAQNGVGRGMKRNIAVEV 270
           S++    L+I +  K+  D G Y CVA+N +G  +  + ++EV
Sbjct: 68  SLF---FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment D1-D2 Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
           ++   + D G Y+C V         A + L V  PP+ S N   ++   +G T+   C A
Sbjct: 83  LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA 142
Query: 208 NGFPAPTISW 217
            G PAP+++W
Sbjct: 143 EGSPAPSVTW 152

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--ALSTGGSIYRGNILKI 239
           PPII        +  +G T  L C A G P P ISW ++           +I     L+I
Sbjct: 8   PPIILQGPANQTLAVDG-TALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 240 PNITKTDRGTYYCVAQNGVGR 260
            N+  +D GTY CVA +  G 
Sbjct: 67  KNLRISDTGTYTCVATSSSGE 87

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 137 TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
            D ++ST  L+I      DAGIYKC V      +  A V + + +  +  +  T      
Sbjct: 57  NDDDSST--LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF-K 113
Query: 197 EGQTVYLYCYANGFPAPTISWR---RDNSAALSTGGSIYRGNILKIPNITKTDRGTYYC 252
           EG+   + C       PTI W+   RD          +   N L+I  I KTD GTY C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 174 EVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR 233
           ++ ++ R  P I+ N   +   S G+++ + C A+G P P I W +DN   +   G + +
Sbjct: 2   QLTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 234 -GNI-LKIPNITKTDRGTYYCVAQNGVG 259
            GN  L I  + K D G Y C A + +G
Sbjct: 61  DGNRNLTIRRVRKEDEGLYTCQACSVLG 88

>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component Length = 585

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
           +  R  LT  PE  T++++I ++ + D+G YKC + I+ +  +S +V L V + P +  N
Sbjct: 60  YAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLL-N 117
Query: 189 STRSVIVSEGQTVYLYC 205
            T+   V  G+TV + C
Sbjct: 118 DTKVYTVDLGRTVTINC 134

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 42/202 (20%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRR-------DNSAALSTGGSIYRGNILKIPNIT 243
           + V    G+   L C   G P P I W R            +S+ G   R + L +    
Sbjct: 15  KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG---RTHTLTVMTEE 71
Query: 244 KTDRGTYYCVAQNGVGR---GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE-- 298
           + D G Y C+A N VG      K  +    +F P   +     G      + L  HV   
Sbjct: 72  QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV---GSTLRLHVMYI 128
Query: 299 AYPPPAIVWIK--------DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR-QFGQY 349
             P PA+ W          + + I N +HY             T L +  ++R+   G+Y
Sbjct: 129 GRPVPAMTWFHGQKLLQNSENITIENTEHY-------------THLVMKNVQRKTHAGKY 175
Query: 350 ACKAANKYGS--AQKEIELFDR 369
             + +N +G+  A  ++E+ D+
Sbjct: 176 KVQLSNVFGTVDAILDVEIQDK 197

>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In Co A Neutralizing Fab Length = 211

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 237 LKIPNITKTDRGTYYCVAQNG----VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAI 292
           LKI ++   D GTYYC   NG     G G K  +    + AP ++I  P   Q     A 
Sbjct: 73  LKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLELK-RADAAPTVSIFPPSSKQLTSGGAS 131
Query: 293 LECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITI-ERRQFGQ 348
           + C +  + P  I   W  DG +  N    S +   + D  +S +S   +T  E  +   
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 191
Query: 349 YACKAANK 356
           Y C+A +K
Sbjct: 192 YTCEATHK 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-74
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-56
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-31
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-51
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-49
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-30
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-48
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-42
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-48
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-47
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-44
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-44
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-32
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-25
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-37
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-28
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-47
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-26
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-47
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-46
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-42
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-40
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-44
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-35
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-27
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-44
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-25
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-44
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-23
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-42
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-37
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-29
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-42
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-42
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-40
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-40
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-38
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-42
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-41
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-32
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-42
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-41
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-25
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-41
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-41
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-36
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-30
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-41
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-41
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-36
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	8e-40
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-31
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-39
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-39
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-39
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-38
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-32
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-08
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-38
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-30
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-24
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-36
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-26
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-23
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-36
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-26
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-35
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-35
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-34
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-33
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-27
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-15
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-35
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-18
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-35
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-27
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-35
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-25
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-09
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-35
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-24
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-35
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-32
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-35
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-25
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-19
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-34
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-31
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-34
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-28
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-33
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-21
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-19
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-33
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-33
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-33
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-26
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-32
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-18
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-32
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-32
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-20
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-06
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-31
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-31
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-21
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-19
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-30
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-23
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-30
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-26
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	8e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-30
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-30
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-23
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-29
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-29
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-28
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-28
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-27
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-25
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-27
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-19
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-25
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-19
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-13
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-25
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-23
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-22
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-24
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-24
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-24
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-24
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-21
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-23
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-22
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-22
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-20
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-22
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-22
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-22
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-22
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-18
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-22
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-19
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-21
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-17
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-21
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-13
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-20
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-20
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-19
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-19
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-10
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-19
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-13
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-04
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-18
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-18
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-18
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	5e-18
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-18
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	8e-18
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-17
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-17
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	4e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-17
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-17
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-17
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-08
2ens_A	96	Advanced glycosylation END product-specific recept	3e-16
2ens_A	96	Advanced glycosylation END product-specific recept	2e-09
2ens_A	96	Advanced glycosylation END product-specific recept	4e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-16
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	6e-10
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-16
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-13
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-15
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-10
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-15
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-15
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	9e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-14
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-06
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-10
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	6e-15
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-14
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-14
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-12
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-04
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-14
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-12
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-05
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-13
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-13
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-12
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-05
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	7e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-13
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	9e-13
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	9e-10
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	9e-13
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-12
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-12
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-12
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-12
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-12
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-11
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	3e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	9e-11
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-08
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	1e-10
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-07
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	2e-10
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	3e-10
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	6e-05
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	4e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	9e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	8e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-08
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	5e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-09
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	7e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	2e-09
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	1e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-08
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	9e-09
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-06
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	9e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-08
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	9e-09
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	8e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-07
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	2e-08
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	6e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-07
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	2e-08
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	1e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-06
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	3e-08
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	8e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	5e-08
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	6e-08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	5e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	8e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	8e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	9e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-06
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	5e-07
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	1e-04
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	8e-07
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	9e-07
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	2e-06
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	2e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	5e-06
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	4e-06
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	4e-06
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	8e-06
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	1e-05
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	2e-05
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	2e-05
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	3e-05
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	4e-05
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	4e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	7e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	2e-04
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	9e-05
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	1e-04
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	2e-04
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	1e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-04
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	1e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	1e-04
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	1e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	1e-04
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	2e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	2e-04
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	2e-04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	2e-04
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	2e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-04
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	3e-04
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	3e-04
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	4e-04
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	4e-04
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	4e-04
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	4e-04
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	4e-04
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	5e-04
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	5e-04
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	6e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	7e-04
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	7e-04
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	7e-04
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	7e-04

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  232 bits (594), Expect = 1e-74
 Identities = 65/303 (21%), Positives = 108/303 (35%), Gaps = 24/303 (7%)

Query: 71  RTPTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
           R   +  +  +    + ++    C V   A D  + W   +  K            L  +
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK------------LSPN 48

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
             R  +  + +  +  L+I      DAGIYKC V      +  A V + + +  +   N+
Sbjct: 49  QQRISVVWNDD-DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK-NA 106

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---IYRGNILKIPNITKTD 246
                  EG+   + C       PTI W+      +        +   N L+I  I KTD
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166

Query: 247 RGTYYCVAQNGVGRGM-KRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPP 303
            GTY C  +      +  ++I V V   P +   +              L C  + +P P
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226

Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
            + W KDG  I N +     H  + D    + L +  +++    +Y C A NK G     
Sbjct: 227 TMSWTKDGEPIENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYVCIAENKAGEQDAS 283

Query: 364 IEL 366
           I L
Sbjct: 284 IHL 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  185 bits (470), Expect = 4e-56
 Identities = 67/300 (22%), Positives = 109/300 (36%), Gaps = 30/300 (10%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
             ++    +    + ++    C+    +   + W                 G  II   R
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQ-------------GEKIISTQR 50

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
             +  +   S   L+I      DAGIY+C+   +      A V L + +           
Sbjct: 51  VVVQKEGVRSR--LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSP 107

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDRGT 249
               +G+   + C  +  PAP +SW   N    +   + +     N L+I NI K+D G 
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167

Query: 250 YYCVAQN-GVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIV 306
           Y C  +    G    R+I V V   P I++ +       +   +    C     P PAI 
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227

Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           W ++G  I  N+ Y +         S+T L V  I     G Y C+A NK G  +K+  L
Sbjct: 228 WFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  118 bits (298), Expect = 5e-31
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNIL 237
              ++  S   V +S G++ +  C A G P     +       +ST   + +     + L
Sbjct: 4   LLQVT-ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
            I N    D G Y C A +  G+  +  + +E+            Q      DA + C V
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 122

Query: 298 EAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
            + P PA+ W+    ++  +++  +++         ++ +L+++ I +   G Y C+   
Sbjct: 123 SSSPAPAVSWLYHNEEVTTISDNRFAM--------LANNNLQILNINKSDEGIYRCEGRV 174

Query: 356 KYG 358
           +  
Sbjct: 175 EAR 177

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  171 bits (436), Expect = 3e-51
 Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 33/301 (10%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P            + ++   KC V        I W K                  I    
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKD--------------NREIRPGG 50

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR 191
            +++T    T+T  L++ ++ + DAG Y C    ++  K S   +L V+ PP        
Sbjct: 51  NYKMTLVENTAT--LTVLKVTKGDAGQYTC-YASNVAGKDSCSAQLGVQEPPRFIKKLEP 107

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-----LKIPNITKTD 246
           S IV + +     C   G P   + W +D +  +          +     L++ N++  D
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDET-EIQESSKFRMSFVESVAVLEMYNLSVED 166

Query: 247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAI 305
            G Y C A N  G     + +++V+  PV    +P   + L+  D  LEC ++  PP  +
Sbjct: 167 SGDYTCEAHNAAGSASS-STSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPPFQV 224

Query: 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
            W KD  ++ + + Y +       E   TS+ ++ ++    G+Y CKA+N  GS      
Sbjct: 225 SWHKDKRELRSGKKYKI-----MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279

Query: 366 L 366
           +
Sbjct: 280 I 280

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  170 bits (433), Expect = 2e-49
 Identities = 55/313 (17%), Positives = 106/313 (33%), Gaps = 40/313 (12%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
                 + E+     +   L C +  A   P+I W K  +           +  +   D 
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS-------GADPNADVTDFDR 153

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR----------R 181
           R   T  P+ + Y   + +   +D   Y C    +  ++    VE  ++           
Sbjct: 154 RI--TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GN 235
            P+     ++ ++   G    +YC     P    ++ ++                   G 
Sbjct: 212 EPVPQ-YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAIL 293
            L        D G Y C   NGVG+  K ++ + V  AP     +P +   ++   D  +
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ-KPEKVIVVKQGQDVTI 329

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
            C V   P P +VW  +   + +    +V         +D+ L +  ++    G Y C+A
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPL-SGGRATV---------TDSGLVIKGVKNGDKGYYGCRA 379

Query: 354 ANKYGSAQKEIEL 366
            N++G    E  +
Sbjct: 380 TNEHGDKYFETLV 392

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  136 bits (343), Expect = 1e-36
 Identities = 53/316 (16%), Positives = 84/316 (26%), Gaps = 44/316 (13%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLII 128
            + P +     E +        L+C ++         W K               G    
Sbjct: 4   DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK--------------DGKSYN 49

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
                      E S   L     Q +D G Y+C          S  +             
Sbjct: 50  WQEHNAALRKDEGS---LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA- 105

Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAALSTGG--------SIYRGNILKI 239
            T      EG+   L C   N +P P I+W++  S A             +      L  
Sbjct: 106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165

Query: 240 PNITKTDR---GTYYCVAQNGVGRGMKRNIAVEV---------EFAPVITINRPRQGQAL 287
             +TK D      Y C A+N         +  E+              +     +   A 
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225

Query: 288 Q-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
                ++ C   + P     + K+G  +  N    ++    +   S   L   T      
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT---SGKRLLFKTTLPEDE 282

Query: 347 GQYACKAANKYGSAQK 362
           G Y C+  N  G  QK
Sbjct: 283 GVYTCEVDNGVGKPQK 298

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  118 bits (298), Expect = 2e-30
 Identities = 37/198 (18%), Positives = 59/198 (29%), Gaps = 18/198 (9%)

Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYR-- 233
           L V + P++ D     V+  E     L C   G       SW++D   + +         
Sbjct: 1   LPVDKYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDG-KSYNWQEHNAALR 58

Query: 234 --GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ----GQAL 287
                L       +D G Y C A+   G    R I+    +          +    G+  
Sbjct: 59  KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR-- 116

Query: 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSV--SHFATSDEFSDTSLRVITIERR 344
                L+C +  AYP P I W K       N   +          + +     V   +  
Sbjct: 117 --PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS 174

Query: 345 QFGQYACKAANKYGSAQK 362
              +Y C A N     + 
Sbjct: 175 DIYKYVCTAKNAAVDEEV 192

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  113 bits (285), Expect = 2e-28
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 17/194 (8%)

Query: 67  ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGS 125
           +  +  P   Y+S++ +        + C    ++      + K               G 
Sbjct: 207 SGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKN--------------GK 251

Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
            +  +   ++T    TS   L  K     D G+Y CEV   +       ++L V   P  
Sbjct: 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT 245
                + ++V +GQ V + C   G PAP + W  +    LS G +    + L I  +   
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK-PLSGGRATVTDSGLVIKGVKNG 370

Query: 246 DRGTYYCVAQNGVG 259
           D+G Y C A N  G
Sbjct: 371 DKGYYGCRATNEHG 384

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  168 bits (427), Expect = 1e-48
 Identities = 72/303 (23%), Positives = 119/303 (39%), Gaps = 36/303 (11%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
                 ++     +  T  LKC V   D  P I W K       + L           DS
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQ-----QDLNPIPG------DS 169

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST- 190
           R  +       +  L I  +Q  D+G+Y+C      + +   E E+ +   P +      
Sbjct: 170 RVVVL-----PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF 224

Query: 191 ----RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITK 244
                +VI  EG+   L C  +G+P P+ +W R            S+  G+ L I N+T 
Sbjct: 225 LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTD 284

Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPP 303
            D GTY CV        +  +  + V   P   +N P    A +  D   EC V   P P
Sbjct: 285 DDSGTYTCVVTYKNEN-ISASAELTVLVPPWF-LNHPSNLYAYESMDIEFECAVSGKPVP 342

Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
            + W+K+G  ++ + ++ +           ++LR++ + +   G Y C A N+ G+AQ  
Sbjct: 343 TVNWMKNGDVVIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSS 394

Query: 364 IEL 366
            +L
Sbjct: 395 AQL 397

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  152 bits (386), Expect = 1e-42
 Identities = 71/312 (22%), Positives = 115/312 (36%), Gaps = 38/312 (12%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
           +R+        + +        L CS +     PVI W K         L + M      
Sbjct: 19  RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG-----LILALGM------ 67

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPII 185
            D R Q   +       +      + D G+Y+CE   SL +    +S   +++V  P   
Sbjct: 68  -DDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEA--SLGDSGSIISRTAKVMVAGPLRF 124

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN----SAALSTGGSIYRGNILKIPN 241
             + T S+    G TV L C   G P PTI W+++          +   +     L+I  
Sbjct: 125 L-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT-----INRPRQGQALQ-YDAILEC 295
           +   D G Y C A+N           V +   P +      + RP    A++  DA+LEC
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243

Query: 296 HVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
            V  YPPP+  W++    I + ++ YS+           ++L +  +     G Y C   
Sbjct: 244 CVSGYPPPSFTWLRGEEVIQLRSKKYSL--------LGGSNLLISNVTDDDSGTYTCVVT 295

Query: 355 NKYGSAQKEIEL 366
            K  +     EL
Sbjct: 296 YKNENISASAEL 307

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  171 bits (434), Expect = 3e-48
 Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 33/313 (10%)

Query: 61  SFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLP 119
           S  ++L+  +  P            + ++   KC V        I W K +       + 
Sbjct: 186 SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDN-----REIR 239

Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVEL 177
                        +++T    T+T  L++ ++ + DAG Y C      N   K S   +L
Sbjct: 240 PG---------GNYKMTLVENTAT--LTVLKVTKGDAGQYTCYAS---NVAGKDSCSAQL 285

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---- 233
            V+ PP        S IV + +     C   G P   + W +D +    +          
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345

Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAIL 293
             +L++ N++  D G Y C A N  G     + +++V+  PV              D  L
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHL 404

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
           EC ++  PP  + W KD  ++ + + Y +       E   TS+ ++ ++    G+Y CKA
Sbjct: 405 ECELQGTPPFQVSWHKDKRELRSGKKYKI-----MSENFLTSIHILNVDSADIGEYQCKA 459

Query: 354 ANKYGSAQKEIEL 366
           +N  GS      +
Sbjct: 460 SNDVGSDTCVGSI 472

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  167 bits (425), Expect = 5e-47
 Identities = 64/313 (20%), Positives = 114/313 (36%), Gaps = 30/313 (9%)

Query: 61  SFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPI 120
           S ++ +   +  P+ +   ++  + +      +C +  ++   V W K            
Sbjct: 90  SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK------------ 137

Query: 121 SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIV 179
              G L+  D+  Q +     +T  L I +  ++  G Y C     L     SA++ L  
Sbjct: 138 --DGELLKDDANLQTSFIHNVAT--LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GN 235
              P   D    SV ++ G++    C+  G     I+W +DN      G           
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAIL 293
            L +  +TK D G Y C A N  G+    +  + V+  P   I +    + ++       
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRF-IKKLEPSRIVKQDEHTRY 311

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
           EC +   P   ++W KD  +I  +  + +S        S   L +  +     G Y C+A
Sbjct: 312 ECKIGGSPEIKVLWYKDETEIQESSKFRMSF-----VESVAVLEMYNLSVEDSGDYTCEA 366

Query: 354 ANKYGSAQKEIEL 366
            N  GSA     L
Sbjct: 367 HNAAGSASSSTSL 379

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  161 bits (408), Expect = 1e-44
 Identities = 59/302 (19%), Positives = 106/302 (35%), Gaps = 39/302 (12%)

Query: 75  ISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRF 133
           I  +   +I    +    +C +        + W K                + I   S+F
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYK--------------DETEIQESSKF 338

Query: 134 QLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDNST 190
           +++     +   L +  +   D+G Y CE      N     S+   L V+ PP+      
Sbjct: 339 RMSFVESVAV--LEMYNLSVEDSGDYTCEAH----NAAGSASSSTSLKVKEPPVFRKKP- 391

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIPNITKT 245
             V   +G  V+L C   G P   +SW +D    L +G             + I N+   
Sbjct: 392 HPVETLKGADVHLECELQGTPPFQVSWHKDKRE-LRSGKKYKIMSENFLTSIHILNVDSA 450

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPA 304
           D G Y C A N VG       ++ ++  P     +      +   +  L+  +E   P +
Sbjct: 451 DIGEYQCKASNDVGSD-TCVGSITLKAPPRFVK-KLSDISTVVGEEVQLQATIEGAEPIS 508

Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
           + W KD  +I+        +   S   +  +L+    E    G+Y C+  N+ G+ +   
Sbjct: 509 VAWFKDKGEIVRESD----NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFA 564

Query: 365 EL 366
            L
Sbjct: 565 TL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  159 bits (405), Expect = 3e-44
 Identities = 60/309 (19%), Positives = 109/309 (35%), Gaps = 44/309 (14%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P      +     I +   L+C V    +  + W K                + +     
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK--------------EHTKLRSAPA 51

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR---RPPIIS 186
           +++      ++  L I ++  +D G Y C+      N    V++   L+++    PP  +
Sbjct: 52  YKMQFKNNVAS--LVINKVDHSDVGEYTCKA----ENSVGAVASSAVLVIKERKLPPSFA 105

Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-----LKIPN 241
               + V  + G  V   C  NG     +SW +D    L    ++    I     L+I  
Sbjct: 106 R-KLKDVHETLGFPVAFECRINGSEPLQVSWYKDGE-LLKDDANLQTSFIHNVATLQILQ 163

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQ-YDAILECHV 297
             ++  G Y C A N +G     +  + +   E  P   + +P             +CHV
Sbjct: 164 TDQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDL-KPVSVDLALGESGTFKCHV 221

Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
               P  I W KD  +I    +Y ++        +  +L V+ + +   GQY C A+N  
Sbjct: 222 TGTAPIKITWAKDNREIRPGGNYKMTL-----VENTATLTVLKVTKGDAGQYTCYASNVA 276

Query: 358 GSAQKEIEL 366
           G      +L
Sbjct: 277 GKDSCSAQL 285

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  126 bits (318), Expect = 4e-32
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNIL 237
           PP   +     V  + G+ + L C  +G P   I+W ++++   S      +       L
Sbjct: 5   PPYFIE-PLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
            I  +  +D G Y C A+N VG       + ++    P     + +            EC
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
            +    P  + W KDG  + ++ +   S        +  +L+++  ++   GQY C A+N
Sbjct: 124 RINGSEPLQVSWYKDGELLKDDANLQTSF-----IHNVATLQILQTDQSHVGQYNCSASN 178

Query: 356 KYGSAQKEIEL 366
             G+A    +L
Sbjct: 179 PLGTASSSAKL 189

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  107 bits (268), Expect = 2e-25
 Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 29/196 (14%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P                  L+C +Q       + W K                  +    
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQ-GTPPFQVSWHK--------------DKRELRSGK 429

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNS 189
           ++++ ++   ++  + I  +   D G Y+C+     N+    +    + ++ PP      
Sbjct: 430 KYKIMSENFLTS--IHILNVDSADIGEYQCKAS---NDVGSDTCVGSITLKAPPRFVKKL 484

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIPNITK 244
              +    G+ V L     G    +++W +D    +    +I+         L+      
Sbjct: 485 -SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543

Query: 245 TDRGTYYCVAQNGVGR 260
            + G Y C  +N  G 
Sbjct: 544 ANAGKYTCQIKNEAGT 559

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  165 bits (420), Expect = 8e-48
 Identities = 66/290 (22%), Positives = 106/290 (36%), Gaps = 39/290 (13%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           Q   L C            W+  +                   + RF   +    +   L
Sbjct: 118 QGMVLLCGPPPHSGELSYAWIFNE-------------YPSYQDNRRF--VSQETGN---L 159

Query: 147 SIKEIQETDAGIYKCEV--IISLNNKVSAEVELIVR-------RPPIISDNSTRSVIVSE 197
            I +++++D G Y C V   ++ +  +     LI+R         P I      +V   +
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQN 256
           G TV L C+A G P PTI WRR +   ++     ++ N IL+IPN  + D G+Y CVA+N
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAEN 279

Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316
             G+       +     P           A++     EC     P P   W+K+G  ++ 
Sbjct: 280 SRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT 338

Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                +            +L +  +     G Y C A NK+G      EL
Sbjct: 339 RDRIQI---------EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  138 bits (349), Expect = 2e-37
 Identities = 63/296 (21%), Positives = 94/296 (31%), Gaps = 46/296 (15%)

Query: 88  QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
           +   L C        P   + W    T        + +       D R+ +    + S  
Sbjct: 24  KKVKLSCE---VKGNPKPHIRWKLNGT-------DVDIGM-----DFRYSV---VDGSLL 65

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
           I +    +  DAG Y+C    S    VS E +L           +  +V V  GQ + L 
Sbjct: 66  INNPN--KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123

Query: 205 CYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261
           C         + +W  +   +              L I  + K+D G Y CV  N V   
Sbjct: 124 CGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNH 183

Query: 262 MK---------RNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIK-D 310
                      RN  V  E+ P I +  P    A +     LEC     P P I+W + D
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243

Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           G  I                 S+  L +   ++   G Y C A N  G    + +L
Sbjct: 244 GKPIARKARR---------HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  111 bits (280), Expect = 7e-28
 Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 16/189 (8%)

Query: 182 PPIISD--NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNIL 237
            P+     +     + SE + V L C   G P P I W+ + +         Y      L
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 238 KIPNITKT-DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
            I N  KT D GTY C+A N  G  + R   ++  +               +    +L C
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124

Query: 296 HV-EAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
                    +  WI +      +N+ +              +L +  +E+   G Y C  
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQE--------TGNLYIAKVEKSDVGNYTCVV 176

Query: 354 ANKYGSAQK 362
            N   + + 
Sbjct: 177 TNTVTNHKV 185

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  108 bits (271), Expect = 1e-26
 Identities = 49/204 (24%), Positives = 72/204 (35%), Gaps = 28/204 (13%)

Query: 60  LSFLISLASSQRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP---VIWMKMDTAKKM 115
           L         +  P I     E +      T  L+C    A   P   ++W + D     
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF---ALGNPVPTILWRRAD----- 243

Query: 116 EPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEV 175
                   G  I   +R         S  IL I   Q+ DAG Y+C    +   K  A+ 
Sbjct: 244 --------GKPIARKARRHK------SNGILEIPNFQQEDAGSYECVAE-NSRGKNVAKG 288

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
           +L     P         + V+  ++V+  C ANG P PT  W ++    L+         
Sbjct: 289 QLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG 347

Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
            L I  +  +D G Y CVA+N  G
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHG 371

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  158 bits (400), Expect = 5e-47
 Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 7/190 (3%)

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTIS--WRRDNSAALSTGGSIYRGNIL 237
           +  P I   S   +I      V L C         +   W ++    L+           
Sbjct: 1   QNEPRIV-TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG-VELTATRKNASNMEY 58

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
           +I      D G Y+CV         K N  +EV+ AP IT ++  + +    DA++ C  
Sbjct: 59  RINKPRAEDSGEYHCVYHFVSAP--KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116

Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANK 356
             YP P  +W K    +      S   F   ++ + T L ++ ++  +  G+Y C A N 
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176

Query: 357 YGSAQKEIEL 366
            GSA     L
Sbjct: 177 IGSASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  101 bits (254), Expect = 8e-26
 Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 42/205 (20%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI---WMKMDTAKKMEPLPISMSGSL 126
           Q  P I    +  I+D      L+C++  +  + ++   W K              +G  
Sbjct: 1   QNEPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTK--------------NGVE 45

Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPI 184
           +    +         S     I + +  D+G Y C      +      A   + V+  P 
Sbjct: 46  LTATRK-------NASNMEYRINKPRAEDSGEYHCVY----HFVSAPKANATIEVKAAPD 94

Query: 185 ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---------GN 235
           I+    RS   +EGQ   +YC + G+P P   WR+  +       +              
Sbjct: 95  IT-GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT 153

Query: 236 ILKIPNITKT-DRGTYYCVAQNGVG 259
            L I N+  T D G Y C A N +G
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIG 178

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  161 bits (408), Expect = 5e-47
 Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 32/298 (10%)

Query: 88  QTADLKCSVQYADD-----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP--- 139
            +  L C +Q  +        + W +   +  M     +  G       R +        
Sbjct: 16  DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT-QGPSYSESKRLEFVAARLGA 74

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
           E     L +  ++  D G Y C  +       S ++ L V   P  +      V ++   
Sbjct: 75  ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGEP 133

Query: 200 TVYLYCYA-NGFPAPTISWRRDN-------SAALSTGGSIYRGNILKIPNITKTDRGTYY 251
                C +  G P   I+W  D               G++   ++  +   ++ D     
Sbjct: 134 VPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT 193

Query: 252 CVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQAL-QYDAILECHVEAYPPPA-IVWI 308
           C  ++      +   + + V + P ++I+       L Q +A L C   + P P    W 
Sbjct: 194 CKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS 253

Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                +                     L +  +++       C   N  G+ Q E+ +
Sbjct: 254 TTMGPLPPFA-----------VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 89.8 bits (222), Expect = 2e-20
 Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 40/218 (18%)

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSA------- 223
           +++V+ P          V    G +V L CY             ++W R   +       
Sbjct: 1   DVVVQAPT--------QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH 52

Query: 224 ---------------ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268
                            +  G+  R   L++  +   D G Y C+           +I +
Sbjct: 53  QTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112

Query: 269 EVEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
            V   P  T    +     +   +  C      PP  I W  D   + N           
Sbjct: 113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF---L 169

Query: 328 SDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEI 364
           S   + TSL ++    +  G    CK  ++     + +
Sbjct: 170 SGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  156 bits (395), Expect = 3e-46
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDR 247
                 +G+   + C  +  PAP +SW   N    +   + +     N L+I NI K+D 
Sbjct: 10  SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69

Query: 248 GTYYCVAQN-GVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPA 304
           G Y C  +    G    R+I V V   P I++ +       +   +    C     P PA
Sbjct: 70  GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129

Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
           I W ++G  I  N+ Y +         S+T L V  I     G Y C+A NK G  +K+ 
Sbjct: 130 ISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 182

Query: 365 EL 366
            L
Sbjct: 183 FL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  107 bits (269), Expect = 5e-28
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 25/193 (12%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
            T   +   Q     + A++ C V  +   P + W+            ++        D+
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLY-------HNEEVTTIS-----DN 49

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPPIISD-NS 189
           RF +  +       L I  I ++D GIY+CE  + +       ++ +IV  PP IS    
Sbjct: 50  RFAMLAN-----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 104

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNILKIPNITKTD 246
           + +     G+ +   C A+G P P ISW R+    +              L + NI  +D
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFRNGK-LIEENEKYILKGSNTELTVRNIINSD 163

Query: 247 RGTYYCVAQNGVG 259
            G Y C A N  G
Sbjct: 164 GGPYVCRATNKAG 176

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  166 bits (421), Expect = 1e-45
 Identities = 75/312 (24%), Positives = 111/312 (35%), Gaps = 26/312 (8%)

Query: 61  SFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLP 119
           S  + L      P I    QE+  +   +  LKC     +  P I W             
Sbjct: 418 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEISWELDGK-------K 469

Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           I+ +    +     Q  T        L+I  +   D G+YKC    S         +L V
Sbjct: 470 IANNDRYQVG----QYVTVNGDVVSYLNITSVHANDGGLYKCIAK-SKVGVAEHSAKLNV 524

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNIL 237
              P I         +  G+T+ + C   G+P  +I W RDN  AL       ++    L
Sbjct: 525 YGLPYIR--QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN-RALPINRKQKVFPNGTL 581

Query: 238 KIPNITK-TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
            I N+ + +D+ TY CVA+N  G   + ++ V+V   P I      +G A       L C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641

Query: 296 HVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
            V     P  I W  DG  I  +   + S          + L +  +E    G + C A 
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR----RGSVLTIEAVEASHAGNFTCHAR 697

Query: 355 NKYGSAQKEIEL 366
           N  G  Q    L
Sbjct: 698 NLAGHQQFTTPL 709

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  166 bits (421), Expect = 2e-45
 Identities = 73/308 (23%), Positives = 110/308 (35%), Gaps = 36/308 (11%)

Query: 68  SSQRTPTISYISQEQIKDIA--QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSG 124
            S   P +  +++  +K  +   T  L C  Q     PV  W K       E        
Sbjct: 242 ISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFI-----EGTTR---- 291

Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRR 181
                     L    +  +  L IK+    D+G Y C V    NN     S E  L V  
Sbjct: 292 -----KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV----NNSVGGESVETVLTVTA 342

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
           P         +  V  G+     C   G P  T+SW +D  A   +         L+I +
Sbjct: 343 PLSAKI-DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV------LRIES 395

Query: 242 ITKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQY--DAILECHVE 298
           + K D+G Y C  +N          + +   F P   I +  Q + ++      L+C   
Sbjct: 396 VKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP-PVIRQAFQEETMEPGPSVFLKCVAG 454

Query: 299 AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
             P P I W  DG +I NN  Y V  + T +    + L + ++     G Y C A +K G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514

Query: 359 SAQKEIEL 366
            A+   +L
Sbjct: 515 VAEHSAKL 522

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  156 bits (396), Expect = 3e-42
 Identities = 54/286 (18%), Positives = 97/286 (33%), Gaps = 29/286 (10%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +T  + C V       ++W +                  +  + + ++  +       L 
Sbjct: 542 ETLIVTCPVAGYPIDSIVWER--------------DNRALPINRKQKVFPN-----GTLI 582

Query: 148 IKEIQ-ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
           I+ ++  +D   Y C             +E+ V   P I   +        GQ + L+C 
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642

Query: 207 ANGFPAP-TISWRRDNSAALSTGGSIYR-----GNILKIPNITKTDRGTYYCVAQNGVGR 260
             G   P  I W  D  A     G         G++L I  +  +  G + C A+N  G 
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702

Query: 261 GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
             +    + V   P   +    +  A   DA +EC  + +P P + W K          Y
Sbjct: 703 -QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT--PGEY 759

Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                + +    + +L V  I++   G Y C+A N  GS    + +
Sbjct: 760 KDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  150 bits (381), Expect = 4e-40
 Identities = 61/298 (20%), Positives = 98/298 (32%), Gaps = 49/298 (16%)

Query: 88  QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
            +A +KC +          V W   +     E            +D ++ +       + 
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDE-----EENYFP----GAEYDGKYLVL-----PSG 199

Query: 145 ILSIKEIQETDA-GIYKCEVI--ISLNNKVSAEVELIV-------RRPPIISDNSTRSVI 194
            L I+E+   D    Y+C     ++   ++SA    +V         P ++S        
Sbjct: 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259

Query: 195 VSEGQTVYLYCYANGFPAPTISWRRD------NSAALSTGGSIYRGNILKIPNITKTDRG 248
            S   T+ L C A G+P P   W +         A +           L I +    D G
Sbjct: 260 YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 319

Query: 249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI 308
            Y CV  N VG        + V       I+ P Q       A+  C     P   + W+
Sbjct: 320 KYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378

Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           KDG  I                 S++ LR+ ++++   G Y C   N   SA+   EL
Sbjct: 379 KDGKAI---------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  135 bits (342), Expect = 5e-35
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 17/242 (7%)

Query: 146 LSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
           +++   +     ++    +I+  +  ++A      ++ P+     T  +  S      + 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDR------GTYYCVAQ 255
           C A+G P P I W R +  A+     + +      L  P     D         Y C+A+
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY---PPPAIVWIKDGV 312
           N  G  + R++ V    A     +  ++       A+++C + ++       + W  D  
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180

Query: 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERR-QFGQYACKAANKYGSAQKEIELFDRET 371
           +           +          L +  +     +  Y C+  ++     +      R  
Sbjct: 181 ENYFPGAEYDGKYLV---LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 237

Query: 372 QT 373
            T
Sbjct: 238 IT 239

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  107 bits (268), Expect = 2e-25
 Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 27/204 (13%)

Query: 80  QEQIKDIAQTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTT 137
           +E    + Q   L CSV    D P  + W                 G  I  D     + 
Sbjct: 627 EEGPAQVGQYLTLHCSVP-GGDLPLNIDWTL--------------DGQAISEDLGITTSR 671

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSE 197
                + +L+I+ ++ + AG + C    +L         L V  PP      T     ++
Sbjct: 672 VGRRGS-VLTIEAVEASHAGNFTC-HARNLAGHQQFTTPLNVYVPPRWILEPT-DKAFAQ 728

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-------ILKIPNITKTDRGTY 250
           G    + C A+GFP P ++W++           + + +        L + NI KT+ G Y
Sbjct: 729 GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAP 274
            C A NG+G G+   I + V+   
Sbjct: 789 LCEAINGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 13/111 (11%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P       ++       A ++C         V W K       E   +  S ++ + +  
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
                        L +  IQ+T+ G Y CE I  + + +SA + + V+   
Sbjct: 775 -------------LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  157 bits (399), Expect = 1e-44
 Identities = 66/290 (22%), Positives = 95/290 (32%), Gaps = 39/290 (13%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
                 CS           W+  +      P  I           RF   T        L
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNE-----FPNFIPAD------GRRFVSQTTGN-----L 160

Query: 147 SIKEIQETDAGIYKCEV----------IISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
            I + + +D G Y C            + S  +++S   E   +  P I           
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220

Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQN 256
            GQ V L C+A G P P I WR+ + +   T   +    +L I N+   D GTY C A+N
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278

Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316
             GR       + +   P            +  D    C     P PA+ W++DG  + +
Sbjct: 279 IKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337

Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                V         S   LR   +     G Y C A NK+G+     EL
Sbjct: 338 QNRIEV---------SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  132 bits (334), Expect = 2e-35
 Identities = 60/298 (20%), Positives = 87/298 (29%), Gaps = 50/298 (16%)

Query: 88  QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
           +   L C    A   P     W    T      L +         DSR++L         
Sbjct: 23  EKVTLTCR---ARANPPATYRWKMNGT-----ELKMGP-------DSRYRL---VAGDLV 64

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
           I +   ++  DAG Y+C    +    VS E  L        S      V ++EG  V   
Sbjct: 65  ISNP--VKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122

Query: 205 CYAN-GFPAPTISWRRDNSAALSTGGS----IYRGNILKIPNITKTDRGTYYCVAQNGVG 259
           C     +PA +  W  +                    L I     +D G Y C A + + 
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182

Query: 260 RGMKR----------NIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWI 308
              K                 ++AP I    P    AL      LEC     P P I W 
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242

Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           K      +               S+  L +  ++    G Y C+A N  G    +  +
Sbjct: 243 KLDGSQTSKWL-----------SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  110 bits (277), Expect = 2e-27
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 12/192 (6%)

Query: 182 PPIISD--NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNI 236
            P+  +    T     S  + V L C A   P  T  W+ + +       S YR   G++
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
           +    +   D G+Y CVA N  G  + R  ++   F    +       +  +    +  C
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123

Query: 296 HVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
                YP  +  W+ +                     +  +L +   E    G Y+C A 
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFV-----SQTTGNLYIAKTEASDLGNYSCFAT 178

Query: 355 NKYGSAQKEIEL 366
           +      K +  
Sbjct: 179 SHIDFITKSVFS 190

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  101 bits (254), Expect = 3e-24
 Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 37/204 (18%)

Query: 63  LISLASSQRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP---VIWMKMDTAKKMEPL 118
           L +  + Q  P+I          +  Q   L+C    A   P   + W K+D        
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECF---AFGNPVPQIKWRKLD-------- 245

Query: 119 PISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEV 175
                GS               +S  +L I+ +   D G Y+CE      N   + + + 
Sbjct: 246 -----GSQTSKW---------LSSEPLLHIQNVDFEDEGTYECEA----ENIKGRDTYQG 287

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
            +I+   P    +         G  +   C A+G P P + W RD     S       G 
Sbjct: 288 RIIIHAQPDWL-DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG 346

Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
            L+   +   D G Y CVA+N  G
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHG 370

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  156 bits (394), Expect = 1e-44
 Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 33/321 (10%)

Query: 67  ASSQRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPIS 121
               R P+      + +         L CS            V W K     K      +
Sbjct: 8   QQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYN 67

Query: 122 MSGSLIIHDS---RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
            S  + +      R +    P  +   + +  ++  D G+Y CE          +++ L 
Sbjct: 68  PSMGVSVLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT 126

Query: 179 VRRPPIISDNSTRSVI----VSEGQTVYLYCY-ANGFPAPTISWRRDN------SAALST 227
           V   P      T++V+      + + +   C  ANG P   +SW              + 
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186

Query: 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
            G++   +  ++    +  + +  C+    + R  K ++ + V++ P +TI        L
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYL 245

Query: 288 Q-YDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
           Q  D  L C  +A PP     W      +                 + T      I    
Sbjct: 246 QRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ----------NRTLFFKGPINYSL 295

Query: 346 FGQYACKAANKYGSAQKEIEL 366
            G Y C+A N  G+   ++E+
Sbjct: 296 AGTYICEATNPIGTRSGQVEV 316

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  104 bits (260), Expect = 2e-25
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 17/197 (8%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +     C+        V+  +     + E   I      +   S                
Sbjct: 151 KVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS-------------RYR 197

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
           +   +E       C V     ++    + L V+  P ++          +   V L C A
Sbjct: 198 LVPSREAHQQSLACIVN-YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA 256

Query: 208 NGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266
           +  P  T   W   N  +L  G       +     I  +  GTY C A N +G      +
Sbjct: 257 DANPPATEYHWTTLNG-SLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQV 314

Query: 267 AVEVEFAPVITINRPRQ 283
            V +  A  +  +    
Sbjct: 315 EVNITEAAALEHHHHHH 331

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  155 bits (392), Expect = 5e-44
 Identities = 49/298 (16%), Positives = 92/298 (30%), Gaps = 37/298 (12%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYIL 146
            T +L C+          W   +  K +      ++      + R        +   + L
Sbjct: 10  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
            IK ++  D+  Y CEV     ++   EV+L+V      SD       + +GQ++ L   
Sbjct: 70  IIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSD-----THLLQGQSLTLTLE 119

Query: 207 ANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266
           +    +P++  R         G +I  G  L +  +   D GT+ C         ++  I
Sbjct: 120 SPPGSSPSVQCRSPR------GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKI 172

Query: 267 AVEV-EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV-----------------WI 308
            + V  F    +I   ++G+ +++   L   VE       +                   
Sbjct: 173 DIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLK 232

Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              V +                   T L     +    G        K G   +E+ L
Sbjct: 233 NKEVSVKRVTQDPKLQMGKKLPLHLT-LPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 99.9 bits (248), Expect = 1e-23
 Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 45/195 (23%)

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-------------------- 232
           V+  +G TV L C A+   +    W+  N   +      +                    
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 233 -RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDA 291
                L I N+   D  TY C  ++       + +   +       +    QGQ      
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEE--VQLLVFGLTANSDTHL---LQGQ----SL 114

Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
            L         P++       + +                   +L V  +E +  G + C
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWTC 159

Query: 352 KAANKYGSAQKEIEL 366
                    + +I++
Sbjct: 160 TVLQNQKKVEFKIDI 174

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 68.3 bits (166), Expect = 6e-13
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 62/241 (25%)

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTV--- 201
            LS+ +++  D+G + C V+     KV  +++++V         ++  V   EG+ V   
Sbjct: 143 TLSVSQLELQDSGTWTCTVL-QNQKKVEFKIDIVVLAFQ----KASSIVYKKEGEQVEFS 197

Query: 202 --------------YLYCYANGFPAP----TISWRRDN----SAALSTGGSIYRGNILKI 239
                          L+  A    +     T   +                + +   L +
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257

Query: 240 ----PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILEC 295
                       G      +   G+ + + + + V  A  +  N             L C
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMRATQLQKN-------------LTC 303

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
            V     P ++        + N+   VS             + + +   + G + C  ++
Sbjct: 304 EVWGPTSPKLMLSL----KLENKEAKVS----------KREKAVWVLNPEAGMWQCLLSD 349

Query: 356 K 356
            
Sbjct: 350 S 350

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 66.4 bits (161), Expect = 3e-12
 Identities = 27/207 (13%), Positives = 53/207 (25%), Gaps = 32/207 (15%)

Query: 64  ISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMS 123
           I           S+     ++ +  + +L    +        W+     K  E     ++
Sbjct: 185 IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE-RASSSKSWITF-DLKNKEVSVKRVT 242

Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
               +                 L     Q   +G     +      K+  EV L+V R  
Sbjct: 243 QDPKLQMG------KKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLHQEVNLVVMRAT 295

Query: 184 IISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPN 241
                              L C   G  +P   +S + +N                K   
Sbjct: 296 --------------QLQKNLTCEVWGPTSPKLMLSLKLENK-------EAKVSKREKAVW 334

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAV 268
           +   + G + C+  +     ++ NI V
Sbjct: 335 VLNPEAGMWQCLLSDSGQVLLESNIKV 361

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  151 bits (384), Expect = 2e-42
 Identities = 61/312 (19%), Positives = 102/312 (32%), Gaps = 45/312 (14%)

Query: 74  TISYISQEQIKDIA----QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
                 +E +  +         L+C+       PVI WM                   I 
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS-------------MEPIT 160

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDA-GIYKCEVIISLNN--KVSAEVELIV------ 179
            D R     + +     L    +   D    Y C       +  +      L V      
Sbjct: 161 QDKRVSQGHNGD-----LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215

Query: 180 --RRPPIISDNST-RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN- 235
             R P  +    T  S +V  G  + L C A+G P P I+W +      S        N 
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILE 294
            L+I N+++ D G Y+C+A N +G  ++  I+V V+ AP      P+        D  L 
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLD-EPKNLILAPGEDGRLV 333

Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
           C     P P + W+ +G  + +             E +  ++     +      Y C  +
Sbjct: 334 CRANGNPKPTVQWMVNGEPLQSAPPNPNR------EVAGDTIIFRDTQISSRAVYQCNTS 387

Query: 355 NKYGSAQKEIEL 366
           N++G       +
Sbjct: 388 NEHGYLLANAFV 399

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  137 bits (346), Expect = 7e-37
 Identities = 60/307 (19%), Positives = 106/307 (34%), Gaps = 42/307 (13%)

Query: 79  SQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQL 135
           +++ I D      ++C    A   P     W +           I+        D R  +
Sbjct: 24  AKDHIVDPRDNILIECE---AKGNPAPSFHWTRNSR-----FFNIAK-------DPRVSM 68

Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIV 195
                T           E   G Y+C         +S  + L V + P+    +   V+V
Sbjct: 69  RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128

Query: 196 SEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKTD-RGTYY 251
            EG  + L C    G P+P I W   +   ++     S      L   N+   D +  Y 
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYS 188

Query: 252 CVAQNGVGRGMKRN--IAVEVEFAPVI-----TINRPRQGQALQY-----DAILECHVEA 299
           C A+      +++     ++V     +     +   P+   + Q      D +LEC    
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG 248

Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
            P P I W K G  + +++    +         + +LR+  +     G+Y C A+NK GS
Sbjct: 249 VPTPDIAWYKKGGDLPSDKAKFEN--------FNKALRITNVSEEDSGEYFCLASNKMGS 300

Query: 360 AQKEIEL 366
            +  I +
Sbjct: 301 IRHTISV 307

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  117 bits (294), Expect = 1e-29
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 22/206 (10%)

Query: 171 VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS 230
           +   ++  + +PP I+  S +  IV     + + C A G PAP+  W R++         
Sbjct: 5   MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64

Query: 231 IYR----GNILKIPNIT----KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR 282
                     L I   +    +   G Y C A+N  G  +   I ++V  +P+       
Sbjct: 65  RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP-KENL 123

Query: 283 QGQALQY--DAILECHV-EAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRV 338
               +Q      L+C+     P P I W+   ++ I  ++  S           +  L  
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ--------GHNGDLYF 175

Query: 339 ITIERR-QFGQYACKAANKYGSAQKE 363
             +  +     Y+C A   +    ++
Sbjct: 176 SNVMLQDMQTDYSCNARFHFTHTIQQ 201

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  145 bits (367), Expect = 4e-42
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----G 234
           + + P+I+     +V     +     C    +P P ISW R+    +    + Y     G
Sbjct: 4   LPKAPVITT-PLETVDALVEEVATFMCAVESYPQPEISWTRNKIL-IKLFDTRYSIRENG 61

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILE 294
            +L I ++  +D G Y C A NGVG  ++   A++V+  P IT             A+L 
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121

Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
           C     P P++ WIK    +  N   +V            SLR+  +++   GQY C A 
Sbjct: 122 CTTMGNPKPSVSWIKGDSALRENSRIAVL--------ESGSLRIHNVQKEDAGQYRCVAK 173

Query: 355 NKYGSAQ 361
           N  G+A 
Sbjct: 174 NSLGTAY 180

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  113 bits (285), Expect = 4e-30
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 25/206 (12%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSL 126
            + P I+   +     + + A   C+    + YP   + W +         + +      
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCA---VESYPQPEISWTRNK-----ILIKLF----- 51

Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
              D+R+ +  + +     L+I  ++++D GIY C     +   V +   L V+  P I+
Sbjct: 52  ---DTRYSIRENGQL----LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104

Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKT 245
                +V + EG    L C   G P P++SW + +SA       ++     L+I N+ K 
Sbjct: 105 RP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVE 271
           D G Y CVA+N +G    + + +EVE
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLEVE 189

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  155 bits (392), Expect = 4e-42
 Identities = 51/279 (18%), Positives = 85/279 (30%), Gaps = 37/279 (13%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
               L C  +   +   +W                +   +    R QL+ D  T    L+
Sbjct: 305 DAVALTCEPE-IQNTTYLWWV--------------NNQSLPVSPRLQLSNDNRT----LT 345

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
           +  +   D G Y+C +   L+   S  V L V   P     S        G  + L C+A
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA 405

Query: 208 NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR-NI 266
              P    SW  D       G        L I NIT+ + G Y C A N      +    
Sbjct: 406 ASNPPAQYSWLID-------GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVK 458

Query: 267 AVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSH 324
            + V              + ++        C  EA      +W  +G  +  +    +S+
Sbjct: 459 TITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSN 517

Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
                   + +L +  + R     Y C   N   + + +
Sbjct: 518 -------GNRTLTLFNVTRNDARAYVCGIQNSVSANRSD 549

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  150 bits (380), Expect = 2e-40
 Identities = 55/287 (19%), Positives = 92/287 (32%), Gaps = 29/287 (10%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII-----HDSRFQLTTDPETS 142
           +   L         +   W K +       +   + G+        +  R  +  +    
Sbjct: 15  KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN---- 70

Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR-RPPIISDNSTRSVIVSEGQTV 201
              L I+ I + D G Y   VI S      A  +  V    P  S +S  S  V +   V
Sbjct: 71  -ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129

Query: 202 YLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGR 260
              C      A  + W  + S  +S    +  GN  L + N+T+ D  +Y C  QN V  
Sbjct: 130 AFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSA 189

Query: 261 GMKRNIAVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH 319
               ++ + V + P   TI+          +  L CH  + PP    W  +G    + Q 
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE 249

Query: 320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             + +   ++                 G Y C+A N      +    
Sbjct: 250 LFIPNITVNNS----------------GSYTCQAHNSDTGLNRTTVT 280

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  150 bits (380), Expect = 2e-40
 Identities = 54/295 (18%), Positives = 95/295 (32%), Gaps = 37/295 (12%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
           +        +  +  +        C  +   D   +W   +     + LP+S        
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWVNN-----QSLPVS-------- 154

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
             R QL+         L++  +   D   YKCE    ++ + S  V L V   P     S
Sbjct: 155 -PRLQLSNG----NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTIS 209

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
             +     G+ + L C+A   P    SW  + +   ST         L IPNIT  + G+
Sbjct: 210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-------ELFIPNITVNNSGS 262

Query: 250 YYCVAQNGVGRGMK-RNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIV 306
           Y C A N      +     + V   P            ++      L C  E       +
Sbjct: 263 YTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YL 321

Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
           W  +   +  +    +S+        + +L ++++ R   G Y C   N+     
Sbjct: 322 WWVNNQSLPVSPRLQLSN-------DNRTLTLLSVTRNDVGPYECGIQNELSVDH 369

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  145 bits (367), Expect = 1e-38
 Identities = 51/236 (21%), Positives = 79/236 (33%), Gaps = 28/236 (11%)

Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVR---RPPIISDNSTRS 192
            +  T  L I  I E ++G+Y C+     NN     S      +      P  S +S  S
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQA----NNSASGHSRTTVKTITVSAELPKPSISSNNS 476

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYY 251
             V +   V   C         + W    S  +S    +  GN  L + N+T+ D   Y 
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYV 536

Query: 252 CVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKD 310
           C  QN V       + ++V + P   I  P     L   +  L CH  + P P   W  +
Sbjct: 537 CGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596

Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           G+   + Q   ++    ++                 G YAC  +N        I  
Sbjct: 597 GIPQQHTQVLFIAKITPNNN----------------GTYACFVSNLATGRNNSIVK 636

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  112 bits (281), Expect = 4e-27
 Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 26/194 (13%)

Query: 66  LASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGS 125
             S++        +  +  +        C  + A +   +W                +G 
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWV--------------NGQ 505

Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
            +    R QL+         L++  +   DA  Y C +  S++   S  V L V   P  
Sbjct: 506 SLPVSPRLQLSNG----NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT 561

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT 245
              S        G  + L C++   P+P  SWR +      T        +L I  IT  
Sbjct: 562 PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ-------VLFIAKITPN 614

Query: 246 DRGTYYCVAQNGVG 259
           + GTY C   N   
Sbjct: 615 NNGTYACFVSNLAT 628

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  100 bits (249), Expect = 4e-23
 Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 30/194 (15%)

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--------------------SI 231
              V+EG+ V L  +         SW +      +                        I
Sbjct: 8   PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67

Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EFAPVITINRPRQGQALQYD 290
           Y    L I NI + D G Y            +      V    P  +I+          D
Sbjct: 68  YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKD 127

Query: 291 -AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
                C  E       +W  +   +  +    +S+        + +L +  + R     Y
Sbjct: 128 AVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQLSN-------GNRTLTLFNVTRNDTASY 179

Query: 350 ACKAANKYGSAQKE 363
            C+  N   + + +
Sbjct: 180 KCETQNPVSARRSD 193

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  156 bits (394), Expect = 5e-42
 Identities = 64/345 (18%), Positives = 114/345 (33%), Gaps = 63/345 (18%)

Query: 71  RTPTISYISQEQIKDIAQTADLKCSVQYADDYP--VIWMKMD-----------------T 111
           +    S IS         T  L C+V YA   P  + W                      
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 112 AKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV 171
             +         G   I  ++ Q       +  + ++       + +YKCE +    NKV
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAV----NKV 536

Query: 172 ---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG 228
                 +   V R P I+      +  +E ++V L+C A+      ++W +     L   
Sbjct: 537 GRGERVISFHVTRGPEIT--LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIH 594

Query: 229 GSIYRGN------------------------ILKIPNITKTDRGTYYCVAQNGVGRG--- 261
                                          I+++ N +  D+G Y C+AQ+   +    
Sbjct: 595 VGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC 654

Query: 262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
           + R + V    AP IT N   Q  ++     + C     PPP I+W KD   ++ +    
Sbjct: 655 VVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 714

Query: 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           +          + +L +  + +   G Y C+A +  G A+ E   
Sbjct: 715 LKD-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  154 bits (390), Expect = 1e-41
 Identities = 57/314 (18%), Positives = 110/314 (35%), Gaps = 43/314 (13%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +   L C+ +   +  + +     + K +         L+  D + Q  ++ +     L+
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQH------KKLVNRDLKTQSGSEMKKFLSTLT 293

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST--RSVIVSEGQTVYLYC 205
           I  +  +D G+Y C     L         + V   P ++  S     V  + G+ V +  
Sbjct: 294 IDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352

Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK-R 264
              G+P P I W ++    L +  +I  G++L I  +++ D G Y  +  N + +  +  
Sbjct: 353 KYLGYPPPEIKWYKNGI-PLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSH 411

Query: 265 NIAVEVEFAPVI---TINRPRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMNNQH- 319
            +++ V   P I   ++  P           L C V A PPP  I W     +   N+  
Sbjct: 412 VVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471

Query: 320 ---------------------------YSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
                                       + + FA  +  + T   ++         Y C+
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531

Query: 353 AANKYGSAQKEIEL 366
           A NK G  ++ I  
Sbjct: 532 AVNKVGRGERVISF 545

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  136 bits (342), Expect = 4e-35
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 49/299 (16%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +T  + C    ++    +  +    + +        G+ I  DS+   T           
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPD------GNRISWDSKKGFT----------- 186

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLY 204
           I     + AG+  CE  I+ +    + + ++V    R   +  + +  + +S G+ + L 
Sbjct: 187 IPSYMISYAGMVFCEAKIN-DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 245

Query: 205 CYANGFPAPTISWRRD--------------NSAALSTGGSIYRGNILKIPNITKTDRGTY 250
           C A       I +  +              +    S        + L I  +T++D+G Y
Sbjct: 246 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 305

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ---ALQYDAILECHVEAYPPPAIVW 307
            C A +G+    K +  V V   P +      +      +     +      YPPP I W
Sbjct: 306 TCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKW 364

Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            K+G+ + +N              +   L ++ +  R  G Y     N     ++   +
Sbjct: 365 YKNGIPLESNHTI----------KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVV 413

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  127 bits (321), Expect = 2e-32
 Identities = 45/312 (14%), Positives = 85/312 (27%), Gaps = 39/312 (12%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P +S            T  + C  Q      + W+  +                      
Sbjct: 32  PRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPN-------------NQSGSEQRV 74

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPII---- 185
                        L+I ++   D G YKC                V +   R P I    
Sbjct: 75  EVTECSDGLFCKTLTIPKVIGNDTGAYKCFY----RETDLASVIYVYVQDYRSPFIASVS 130

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGG--SIYRGNILKIPNI 242
             +    +  ++ +TV + C  +      ++  R      +  G   S        IP+ 
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY 190

Query: 243 TKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQY--DAILECHVEA 299
             +  G  +C A+           I V V +     +  P  G  L      +L C    
Sbjct: 191 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250

Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT-----SLRVITIERRQFGQYACKAA 354
                I +  +     +     V+    +   S+      +L +  + R   G Y C A+
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310

Query: 355 NKYGSAQKEIEL 366
           +   + +    +
Sbjct: 311 SGLMTKKNSTFV 322

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  102 bits (254), Expect = 1e-23
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 28/231 (12%)

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
           ++        ++ C          S  +  +    P +S      + +    T+ + C  
Sbjct: 1   MQSKVLLAVALWLCVE----TRAASVGLPSVSLDLPRLSIQKD-ILTIKANTTLQITCRG 55

Query: 208 NGFPAPTISWRRDN-----SAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262
                    W  +         ++          L IP +   D G Y C  +       
Sbjct: 56  Q--RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA-S 112

Query: 263 KRNIAVEVEFAPVITINRPRQGQALQY-----DAILECHVEAYPPPAIV--WIKDGVQIM 315
              + V+   +P I     + G            ++ C          +     +   + 
Sbjct: 113 VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172

Query: 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           +    S          S     + +      G   C+A     S Q  + +
Sbjct: 173 DGNRISWD--------SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 10/123 (8%)

Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVW 307
             + CV       G+   +++++   P ++I +            + C          +W
Sbjct: 10  ALWLCVETRAASVGLPS-VSLDL---PRLSIQKDILTIKANTTLQITC--RGQRDLDWLW 63

Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
             +          +      SD     +L +  +     G Y C       ++   + + 
Sbjct: 64  PNNQSGSEQRVEVTE----CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119

Query: 368 DRE 370
           D  
Sbjct: 120 DYR 122

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  147 bits (373), Expect = 7e-42
 Identities = 56/306 (18%), Positives = 97/306 (31%), Gaps = 37/306 (12%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII 128
           +   P I     E +     T  L+C      +  V W          P P         
Sbjct: 1   AGSIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDG-------PPSP--------- 40

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
                  T   + S+ ILS       + G Y+C          SA + L V+ P    + 
Sbjct: 41  -----HWTLYSDGSSSILSTNNATFQNTGTYRC-TEPGDPLGGSAAIHLYVKDPARPWNV 94

Query: 189 STRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKT 245
             + V+V E Q   L C   +      +S  R     L      S    +   I      
Sbjct: 95  LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFI 154

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQ-YDAILECHVEAY 300
               Y C A  G  + M  +I ++V+      P +T+  P +   ++   A + C   + 
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTL-VPAELVRIRGEAAQIVCSASSV 213

Query: 301 PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360
                V+++     +     S  H     +    +L +  ++ +  G Y+C A+N  G  
Sbjct: 214 DVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL--TLNLDQVDFQHAGNYSCVASNVQGKH 271

Query: 361 QKEIEL 366
              +  
Sbjct: 272 STSMFF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  146 bits (369), Expect = 2e-41
 Identities = 51/305 (16%), Positives = 90/305 (29%), Gaps = 35/305 (11%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII 128
           +   P I     E + +  +T  L+C      +  V W                      
Sbjct: 1   ADPAPVIEPSGPELVVEPGETVTLRCVS----NGSVEWDG-------------------- 36

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
                  T DPE+    L+ +     + G Y+C   +      S  + L V+ P    + 
Sbjct: 37  -PISPYWTLDPESPGSTLTTRNATFKNTGTYRC-TELEDPMAGSTTIHLYVKDPAHSWNL 94

Query: 189 STRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKT 245
             + V V EGQ   L C   +     ++S  R+    +               I      
Sbjct: 95  LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL 154

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP 301
           D  TY C             I ++V       P I +   +  +     A + C      
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAE 214

Query: 302 PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
               V +K G   +     S        +    +L +  ++ +  G Y+C A+N  G+  
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVR--ALSLNAVDFQDAGIYSCVASNDVGTRT 272

Query: 362 KEIEL 366
             +  
Sbjct: 273 ATMNF 277

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  151 bits (383), Expect = 2e-41
 Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 31/287 (10%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           +   ++C   + +    + W   +     + L       +  + +   +           
Sbjct: 243 EPLWIRCKAVHVNHGFGLTWELEN-----KALEEGNYFEMSTYSTNRTMIRI-----LFA 292

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS-DNSTRSVIVSEGQTVYLYC 205
            +  +   D G Y C      +   S    + +     I+  NS+    + + +      
Sbjct: 293 FVSSVARNDTGYYTCSS----SKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348

Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
               +P    +W     +       +  G  +      K   G Y   A+N       + 
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKM 407

Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY---SV 322
             + +   P +      +  A Q      C  + YP P+  W K   +  N        V
Sbjct: 408 FTLNIRRKPQVLA----EASASQ----ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGV 459

Query: 323 SHFATSDEFS---DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +   + +      +S  +   E  +     C A N  G++ + I L
Sbjct: 460 WNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILL 506

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  136 bits (343), Expect = 8e-36
 Identities = 47/317 (14%), Positives = 101/317 (31%), Gaps = 29/317 (9%)

Query: 49  MSVAGPSIIVA-LSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWM 107
           +  +    +V+     +  A   ++    Y +     D++ +  L+  V    +   +W+
Sbjct: 24  VGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV 83

Query: 108 KMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL 167
                            S +     F L      S   + I ++ ET AG Y   +    
Sbjct: 84  F--------------KHSSLNCQPHFDLQNRGVVS---MVILKMTETQAGEYLLFIQSEA 126

Query: 168 NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227
            N  +    + +R   + +          E Q   L C +   P P + W   +S   S 
Sbjct: 127 TN-YTILFTVSIRNTLLYTLRRP-YFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESC 183

Query: 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI--NRPRQGQ 285
                     +   + +       C A+N +GR   R   +++   P  T+     + G+
Sbjct: 184 KEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGE 243

Query: 286 ALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIER 343
            L     + C          + W  +   +    ++ +S ++T+          V ++ R
Sbjct: 244 PLW----IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299

Query: 344 RQFGQYACKAANKYGSA 360
              G Y C ++     +
Sbjct: 300 NDTGYYTCSSSKHPSQS 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  120 bits (302), Expect = 3e-30
 Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 32/231 (13%)

Query: 150 EIQETDAGIYKCEVIISLNNKVSAE----------------VELIVRRPPIISDNSTRSV 193
           E    D  + KC +I   NN  S                    L  +    + +    +V
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE--AAAV 58

Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNITKTDRGTY 250
            V    ++ L    +     +  W   +S+         +      + I  +T+T  G Y
Sbjct: 59  EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD 310
               Q+           V +    + T+ RP   + ++    L C  E+ P P + W+  
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLC 176

Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
             Q               +  +        +         C A N+ G   
Sbjct: 177 DSQG---------ESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 88.2 bits (218), Expect = 3e-19
 Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 50/220 (22%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
             I+  +  +  +I Q  +   SV+    YP     W         +  P    G     
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVR-FKAYPQIRCTWTFSR-----KSFPCEQKGL---- 374

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
                       + Y +S     +   G Y            +    L +RR P      
Sbjct: 375 -----------DNGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRRKP------ 416

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI------------- 236
               +++E       C+++G+P P+ +W++ +  + +    I  G               
Sbjct: 417 ---QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWV 473

Query: 237 --LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
               +            C A N +G      I +      
Sbjct: 474 SSSTLNMSEAIKGFLVKCCAYNSLGTS-CETILLNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 72.0 bits (176), Expect = 6e-14
 Identities = 18/145 (12%), Positives = 47/145 (32%), Gaps = 11/145 (7%)

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
           K  + +     +Y  V+++    G     A+  + +  +      +         L+  V
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSA-SITLQVLV 72

Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
           +A    + +W+     +    H+ + +          S+ ++ +   Q G+Y     ++ 
Sbjct: 73  DAPGNISCLWVFKHSSLNCQPHFDLQNRGVV------SMVILKMTETQAGEYLLFIQSEA 126

Query: 358 GSAQKEIELFDRETQTGDETFPIFY 382
            +      +  R T       P F 
Sbjct: 127 TNYTILFTVSIRNTLLYTLRRPYFR 151

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  151 bits (383), Expect = 2e-41
 Identities = 48/325 (14%), Positives = 94/325 (28%), Gaps = 41/325 (12%)

Query: 63  LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPI 120
           L    + +  P +S      +    +   + C+++          W + ++  K++    
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIK-DVSSSVYSTWKRENSQTKLQEKYN 260

Query: 121 SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
           S           +            L+I   +  D+G++ C    +     +    L V 
Sbjct: 261 S-----------WHHGDFNYERQATLTISSARVNDSGVFMCYAN-NTFGSANVTTTLEVV 308

Query: 181 RPPIISDNSTRS--VIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTG--------- 228
               I+     +  V V++G+ V L      FP P    W   N                
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368

Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
            +I   + L +  +  T+ GTY  +  N           V V   P I            
Sbjct: 369 SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAI-AFNVYVNTKPEILTYDRLV----- 422

Query: 289 YDAILECHVEAYPPPAIVW-------IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
            + +L+C    +P P I W        +    ++     +++              + + 
Sbjct: 423 -NGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS 481

Query: 342 ERRQFGQYACKAANKYGSAQKEIEL 366
             +  G   CKA N  G        
Sbjct: 482 AFKHNGTVECKAYNDVGKTSAYFNF 506

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  151 bits (382), Expect = 2e-41
 Identities = 55/313 (17%), Positives = 97/313 (30%), Gaps = 39/313 (12%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
             +  + +           ++C +    +     +K               G  +  D R
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGC------------QGKPLPKDLR 161

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR----RPPIISDN 188
           F    DP+    I S+K  +        C V     + +S +  L VR      P++S  
Sbjct: 162 F--IPDPKAGIMIKSVK--RAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVS-V 216

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA---------LSTGGSIYRGNILK 238
           S  S ++ EG+   + C      +    +W+R+NS                +  R   L 
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY----DAILE 294
           I +    D G + C A N  G        +EV     I I  P     +      +  L 
Sbjct: 277 ISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINI-FPMINTTVFVNDGENVDLI 334

Query: 295 CHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
              EA+P P    WI       +           S+    + L +  ++  + G Y    
Sbjct: 335 VEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLV 394

Query: 354 ANKYGSAQKEIEL 366
           +N   +A     +
Sbjct: 395 SNSDVNAAIAFNV 407

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  138 bits (349), Expect = 1e-36
 Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 49/306 (16%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P+I     + I  +     L C+        V W      +  E                
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNEN--------------- 77

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
                           ++ + T+ G Y C       + +S  + + VR P  +     RS
Sbjct: 78  ---------KQNEWITEKAEATNTGKYTCTN----KHGLSNSIYVFVRDPAKLFLVD-RS 123

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKT-DRGT 249
           +   E     + C          S +      L             + I ++ +   R  
Sbjct: 124 LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183

Query: 250 YYCVAQNGVGRGMKRNIAVEV----EFAPVITINRP----RQGQALQYDAILECHVEAYP 301
            +C         +     ++V    +  PV+++++     R+G+       + C ++   
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT----VTCTIKDVS 239

Query: 302 PPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360
                 W ++  Q    + Y+  H    +     +L + +      G + C A N +GSA
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA 299

Query: 361 QKEIEL 366
                L
Sbjct: 300 NVTTTL 305

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  105 bits (262), Expect = 7e-25
 Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 36/219 (16%)

Query: 155 DAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP 211
            A  + C +++ L  +       V      PP I    +  +IV  G  + L C   G  
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS-DLIVRVGDEIRLLCTDPG-- 62

Query: 212 APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
              + W  +     +      + N         T+ G Y C  ++G+      +I V V 
Sbjct: 63  --FVKWTFEILDETNEN----KQNEWITEKAEATNTGKYTCTNKHGLS----NSIYVFVR 112

Query: 272 FAPVITINRP----RQGQALQYDAILECHVEAYPPPAIVWIK--DGVQIMNNQHYSVSHF 325
               + +       ++      D ++ C +   P      +K   G  +  +  +     
Sbjct: 113 DPAKLFLVDRSLYGKEDN----DTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPD-- 165

Query: 326 ATSDEFSDTSLRVITIERRQF-GQYACKAANKYGSAQKE 363
                     + + +++R        C    +  S   E
Sbjct: 166 ------PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 97.4 bits (242), Expect = 2e-22
 Identities = 37/209 (17%), Positives = 58/209 (27%), Gaps = 39/209 (18%)

Query: 88  QTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
           +  DL    + A   P    W+ M+          + +     +      +     S   
Sbjct: 329 ENVDLIVEYE-AFPKPEHQQWIYMN---------RTFTDKWEDYPKSENESNIRYVSE-- 376

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC 205
           L +  ++ T+ G Y   V  S  N  +    + V   P I       +         L C
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEI-------LTYDRLVNGMLQC 428

Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGNI----------------LKIPNITKTDRGT 249
            A GFP PTI W            S+   ++                  I +      GT
Sbjct: 429 VAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGT 488

Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
             C A N VG+          +      I
Sbjct: 489 VECKAYNDVGKT-SAYFNFAFKGNNKEQI 516

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  144 bits (365), Expect = 8e-40
 Identities = 65/297 (21%), Positives = 102/297 (34%), Gaps = 48/297 (16%)

Query: 88  QTADLKCSVQ--YADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
            +A +KC +    AD   V+ W   +     E            +D ++ +    E    
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDE-----EENYFP----GAEYDGKYLVLPSGE---- 165

Query: 145 ILSIKEIQETDA-GIYKCEVIISLNN--KVSAEVELIVRRP------PIISDNSTRSVIV 195
            L I+E+   D    Y+C     L    ++SA    +V         P       + + +
Sbjct: 166 -LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224

Query: 196 SEGQTVYLYCYANGFPAPTISWRRD------NSAALSTGGSIYRGNILKIPNITKTDRGT 249
               T+ L C A GFPAP+  W +         A +           L I +    D G 
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 284

Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK 309
           Y CV  N VG        + V       I+ P Q       A+  C     P   + W+K
Sbjct: 285 YLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343

Query: 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           DG  I +               S++ LR+ ++++   G Y C   N   SA+   EL
Sbjct: 344 DGKAIGH---------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  122 bits (307), Expect = 1e-31
 Identities = 50/323 (15%), Positives = 91/323 (28%), Gaps = 47/323 (14%)

Query: 70  QRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISM--- 122
           Q+ P        +I       A+++C    A   P   +IW++ D     +   +     
Sbjct: 1   QKGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDGTAVGDVPGLRQISS 57

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
            G L+    R              +    QE  A +Y C       + +S +V +     
Sbjct: 58  DGKLVFPPFR--------------AEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGF---PAPTISWRRDNSAALSTGG------SIYR 233
                       V  G +  + C    F       +SW  D       G        +  
Sbjct: 104 QYYEA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162

Query: 234 GNILKIPNITKTD-RGTYYCVAQNGVGRGMKRNIAVEV--------EFAPVITINRPRQG 284
              L I  +   D   +Y C  ++ +    + +               AP       +  
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222

Query: 285 QALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343
           + +  +   L C  + +P P+  W K        Q   ++      +    +L +     
Sbjct: 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRV---KQVSGTLIIKDAVV 279

Query: 344 RQFGQYACKAANKYGSAQKEIEL 366
              G+Y C   N  G    E  L
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVL 302

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  139 bits (351), Expect = 1e-39
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 16/202 (7%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------- 233
              +   +S   V + E   V L C  +GF +P + W+ D            +       
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 234 -----GNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQAL 287
                   +   ++T+ D GTY C+     G    +  + + V   P            +
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121

Query: 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATS--DEFSDTSLRVITIERR 344
              A+L C   +  PP    W KDG+ +  N   + +   +S     +   L    +   
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 345 QFGQYACKAANKYGSAQKEIEL 366
             G+Y+C+A N YG+      +
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAV 203

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  100 bits (250), Expect = 5e-25
 Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 31/218 (14%)

Query: 72  TPTISYISQEQIKDIA--QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSL 126
             +++  S E    I       L C+      +    V W           L    +   
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCA---YSGFSSPRVEWKFDQ--GDTTRLVCYNNKIT 56

Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPII 185
             ++ R             ++ K +   D G Y C V     N+    +V+LIV  PP  
Sbjct: 57  ASYEDRVTFLPT------GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK 110

Query: 186 SDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS-----------AALSTGGSIYR 233
                     + G    L C   +G P    +W +D              + S+      
Sbjct: 111 P-TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 169

Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
              L    ++ +D G Y C A+NG G     + AV +E
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  138 bits (350), Expect = 2e-39
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 19/203 (9%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---------- 230
           +  + +  S   V V E +++ L C  +GF +P + W+    +  +              
Sbjct: 1   KGSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58

Query: 231 --IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQAL 287
              +  + +   ++T+ D G Y C+     G+   + +I + V   P            +
Sbjct: 59  RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118

Query: 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT---SLRVITIER 343
              A+L C   +  PP    W KDG+ ++         F  S    D     L    +  
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178

Query: 344 RQFGQYACKAANKYGSAQKEIEL 366
              G+Y C+A N YG+A +    
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  100 bits (250), Expect = 4e-25
 Identities = 42/225 (18%), Positives = 70/225 (31%), Gaps = 38/225 (16%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
            ++     +      ++  L C+      +    V W  +          +    S I  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCT---YSGFSSPRVEWKFVQ----GSTTALVCYNSQITA 54

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----SAEVELIVRRPPI 184
               ++T         ++   +   D G Y C V    + +         + L V  PP 
Sbjct: 55  PYADRVTFSSSG----ITFSSVTRKDNGEYTCMV----SEEGGQNYGEVSIHLTVLVPPS 106

Query: 185 ISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNI------- 236
               S     V+ G    L C   +G P    SW +D  + L+      R  +       
Sbjct: 107 KPTIS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 165

Query: 237 -----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
                L    +T  D G YYC AQNG G    R+ A  ++   + 
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGT-AMRSEAAHMDAVELN 209

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 18/118 (15%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P+   IS      I   A L CS           W K         +  +          
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDG-----ISMLTA-DAKKTRAFM 158

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----SAEVELIVRRPPI 184
               T DP++    L    +   D+G Y C+      N       S    +      +
Sbjct: 159 NSSFTIDPKSGD--LIFDPVTAFDSGEYYCQAQ----NGYGTAMRSEAAHMDAVELNV 210

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  140 bits (354), Expect = 4e-39
 Identities = 45/304 (14%), Positives = 82/304 (26%), Gaps = 42/304 (13%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P+I     E I +   T  L C         V W                          
Sbjct: 13  PSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKT---------------------- 46

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
                  E        ++ + T  G Y C      +N +++ + + VR P  +       
Sbjct: 47  -YFNEMVENKKNEWIQEKAEATRTGTYTCSN----SNGLTSSIYVFVRDPAKLF-LVGLP 100

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY---RGNILKIPNITKTDRGT 249
           +   E     + C          S    +  +L T  +     +  I          R  
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160

Query: 250 YYCVAQNGVGRGMKRNIAVEV----EFAPVITINRPRQGQALQYDAILECHVEAYPPPA- 304
             C AQ            ++V    +  PV+++              + C ++       
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220

Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTS--LRVITIERRQFGQYACKAANKYGSAQK 362
            +W+K   Q  +      + +   D   +    L + +      G + C A N +GSA  
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280

Query: 363 EIEL 366
              L
Sbjct: 281 TTTL 284

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  140 bits (353), Expect = 1e-38
 Identities = 58/322 (18%), Positives = 98/322 (30%), Gaps = 65/322 (20%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
              +L C            W+K               G+ ++   R  +          L
Sbjct: 24  DAVELSCPPPGGGPMGPTVWVKD--------------GTGLVPSERVLV------GPQRL 63

Query: 147 SIKEIQETDAGIYKCEV--------------------IISLNNKVSAEVELIVRRPPIIS 186
            +      D+G Y C                          + +  AE   +    P  +
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123

Query: 187 ---DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI------L 237
                  + + V    TV   C A G P P+ISW ++          I    +      L
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQWSL 182

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQ-YDAI 292
            + ++  +DRG Y CV +N  G  +++   ++V       P++    P    A+   D  
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241

Query: 293 LECHVEAYPPPAIVWIKDGVQ-----IMNNQHYSVSHFATSDEFSDTSLRVITIERRQF- 346
             C V +   P I W+K           +   Y           +D  L V+++    F 
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301

Query: 347 --GQYACKAANKYGSAQKEIEL 366
             G+Y C A N  G +     L
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  121 bits (305), Expect = 9e-32
 Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKI 239
             P         ++   G  V L C    G P     W +D +  + +   +     L++
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65

Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY---------- 289
            N +  D G Y C  +         ++ V    +     +   + +              
Sbjct: 66  LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125

Query: 290 --------------DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTS 335
                              C     P P+I W+K+G +                     S
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL----RHQQWS 181

Query: 336 LRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           L + ++     G Y C   NK+GS ++   L
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 90.8 bits (225), Expect = 1e-20
 Identities = 42/221 (19%), Positives = 70/221 (31%), Gaps = 53/221 (23%)

Query: 70  QRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISM 122
              P  +   +   K +A     T   +C    A   P   + W+K              
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCP---AAGNPTPSISWLK-------------- 159

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----SAEVEL 177
           +G     + R           + L ++ +  +D G Y C V     NK      +  +++
Sbjct: 160 NGREFRGEHRIGGIKL-RHQQWSLVMESVVPSDRGNYTCVV----ENKFGSIRQTYTLDV 214

Query: 178 IVRRP--PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA------------ 223
           + R P  PI+      +     G  V  +C       P I W +                
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274

Query: 224 --ALSTGGSIYR---GNILKIPNITKTDRGTYYCVAQNGVG 259
              L T G+        +L + N+T  D G Y C+A N +G
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 270 VEFAPVITINRPRQGQALQ-YDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
               P     +  Q          L C      P    VW+KDG  ++ ++   V     
Sbjct: 4   AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG---- 59

Query: 328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDE 376
                   L+V+       G Y+C+                    +GD+
Sbjct: 60  -----PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  138 bits (349), Expect = 3e-38
 Identities = 58/313 (18%), Positives = 104/313 (33%), Gaps = 51/313 (16%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P      ++QI      A   C     D  P + W K                   ++  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGK---------------KVNSQ 50

Query: 132 RFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNN---KVSAEVELIVRRPPIIS- 186
           RF+     E++  +L I+ ++   D  +Y+C       N   +++   +L V R   +  
Sbjct: 51  RFETIEFDESAGAVLRIQPLRTPRDENVYECVA----QNSVGEITVHAKLTVLREDQLPS 106

Query: 187 -----DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNI 236
                D   +  +V   +T  + C A+G P P I+W +D    +    S  R        
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP-VDPSASNGRIKQLRSGA 165

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQYDAIL 293
           L+I +  +TD+G Y CVA N  G        + V     AP  +I           +  +
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
            C     P P + W++    +       V               +   + +    Y C A
Sbjct: 226 TCVAVGSPMPYVKWMQGAEDLTPEDDMPVG-----------RNVLELTDVKDSANYTCVA 274

Query: 354 ANKYGSAQKEIEL 366
            +  G  +   ++
Sbjct: 275 MSSLGVIEAVAQI 287

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  117 bits (294), Expect = 2e-30
 Identities = 43/196 (21%), Positives = 64/196 (32%), Gaps = 20/196 (10%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----- 233
              PP       +  I   G      C A G P P ++W +      S            
Sbjct: 3   GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 234 GNILKIPNI-TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--- 289
           G +L+I  + T  D   Y CVAQN VG  +  +  + V     +    P      Q    
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 290 ----DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
                A + C     P P I W KD + +  +            +    +L++ + E   
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-----QLRSGALQIESSEETD 175

Query: 346 FGQYACKAANKYGSAQ 361
            G+Y C A N  G   
Sbjct: 176 QGKYECVATNSAGVRY 191

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  101 bits (253), Expect = 1e-24
 Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 25/230 (10%)

Query: 60  LSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPL 118
           L+ L         P I    Q ++ +  +TA + C+    +  P I W K          
Sbjct: 96  LTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDFL------- 147

Query: 119 PISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
           P+  S S    + R +           L I+  +ETD G Y+C    S   + S+   L 
Sbjct: 148 PVDPSAS----NGRIKQLRSGA-----LQIESSEETDQGKYECVATNSAGVRYSSPANLY 198

Query: 179 VR---RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
           VR     P  S     S  +  G  V + C A G P P + W +     L+    +  G 
Sbjct: 199 VRVQNVAPRFSILPM-SHEIMPGGNVNITCVAVGSPMPYVKWMQGAE-DLTPEDDMPVGR 256

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ 285
              +      D   Y CVA + +G  ++    + V+  P           
Sbjct: 257 -NVLELTDVKDSANYTCVAMSSLGV-IEAVAQITVKSLPKAGTKHHHHHH 304

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 13/117 (11%)

Query: 270 VEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS 328
            E  P      P+    +    A   C     P P + W K G ++ + +  ++      
Sbjct: 3   GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI------ 55

Query: 329 DEFSDTSLRVITIERRQF----GQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
            EF +++  V+ I+  +       Y C A N  G      +L           FP  
Sbjct: 56  -EFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  134 bits (338), Expect = 1e-36
 Identities = 55/317 (17%), Positives = 97/317 (30%), Gaps = 65/317 (20%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
               LKC V        I W K                  I  D +             L
Sbjct: 22  CNVLLKCKVANIKKETHIVWYK--------------DEREISVDEKHDFKDG----ICTL 63

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
            I E  + DAGIY+  +    ++  K  + ++L+      +        I      + + 
Sbjct: 64  LITEFSKKDAGIYEVILK---DDRGKDKSRLKLVDEAFKELM-MEVCKKIALSATDLKIQ 119

Query: 205 CYANGF----------PAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKTDRGT 249
             A G               ++W  + SA +     +     G    L+I   T  D+G 
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178

Query: 250 YYCVAQNGVGRGMKR-NIAVEV-----------EFAPVITINRPRQGQALQYD------- 290
           Y     +G     K  +++ +            + A +   NR R    L          
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238

Query: 291 -AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              L C+V   PPP + W+K+   + ++ H ++      +        +  +     G+Y
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL----KFEAGRTAYFTINGVSTADSGKY 294

Query: 350 ACKAANKYGSAQKEIEL 366
                NKYGS   +  +
Sbjct: 295 GLVVKNKYGSETSDFTV 311

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  105 bits (264), Expect = 5e-26
 Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 23/202 (11%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIY---RG 234
               P        S  V+    V L C          I W +D    +S           
Sbjct: 4   PFTGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDE-REISVDEKHDFKDGI 60

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILE 294
             L I   +K D G Y  + ++  G+  K  + +  E    + +   ++      D  ++
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 295 CHVEA----------YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
              E                + W  +G  I  +                  L++      
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV-----TGEQIWLQINEPTPN 174

Query: 345 QFGQYACKAANKYGSAQKEIEL 366
             G+Y  +  +     QK ++L
Sbjct: 175 DKGKYVMELFDGKTGHQKTVDL 196

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 97.7 bits (243), Expect = 3e-23
 Identities = 42/223 (18%), Positives = 66/223 (29%), Gaps = 47/223 (21%)

Query: 65  SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMS 123
            L            +  +I+  A+   L   V Y  +   V W                +
Sbjct: 100 ELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH--------------N 145

Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR--- 180
           GS I +  R +     E     L I E    D G Y    +          V+L  +   
Sbjct: 146 GSAIRYSDRVKTGVTGEQIW--LQINEPTPNDKGKYVM-ELFDGKTGHQKTVDLSGQAYD 202

Query: 181 ------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222
                             R  ++       V + EG+ + L C   G P P +SW ++  
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 261

Query: 223 AALSTGGSIY------RGNILKIPNITKTDRGTYYCVAQNGVG 259
            AL++           R     I  ++  D G Y  V +N  G
Sbjct: 262 -ALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 303

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  130 bits (328), Expect = 1e-36
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKME-PLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            T +L C+          W   +  K +         G   ++D      +  +   + L
Sbjct: 11  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
            IK ++  D+  Y CEV     ++   EV+L+V      SD       + +GQ++ L   
Sbjct: 71  IIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSD-----THLLQGQSLTLTLE 120

Query: 207 ANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266
           +    +P++  R         G +I  G  L +  +   D GT+ C       + ++  I
Sbjct: 121 SPPGSSPSVQCRSPR------GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKI 173

Query: 267 AVEV-EFAPV 275
            + V  F   
Sbjct: 174 DIVVLAFQKA 183

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  103 bits (257), Expect = 2e-26
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 45/196 (22%)

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY------------------- 232
            V+  +G TV L C A+   +    W+  N   +      +                   
Sbjct: 4   VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 63

Query: 233 --RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD 290
                 L I N+   D  TY C  ++       + +   +       +    QGQ     
Sbjct: 64  DQGNFPLIIKNLKIEDSDTYICEVEDQKEE--VQLLVFGLTANSDTHL---LQGQ----S 114

Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
             L         P++       + +                   +L V  +E +  G + 
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWT 159

Query: 351 CKAANKYGSAQKEIEL 366
           C         + +I++
Sbjct: 160 CTVLQNQKKVEFKIDI 175

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  133 bits (334), Expect = 1e-35
 Identities = 52/304 (17%), Positives = 92/304 (30%), Gaps = 41/304 (13%)

Query: 92  LKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151
              S  ++    +IW       +    PI+        ++R            +L  +  
Sbjct: 38  FNYSTAHSAGLTLIWYWTRQ-DRDLEEPINFRLP----ENRISK------EKDVLWFRPT 86

Query: 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR---SVIVSEGQTVYLYC--- 205
              D G Y C ++ +          L V +     ++  +     +  E     + C   
Sbjct: 87  LLNDTGNYTC-MLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNV 145

Query: 206 --YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ---NGVGR 260
             Y      PTI+W        +    I  G  L       ++ G Y CV     NG   
Sbjct: 146 DGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTF 205

Query: 261 GMKRNIAVEVEFAPVIT----INRPRQGQ----ALQYDAILECHV----EAYPPPAIVWI 308
            + R + V+V  +P       I+ P            + ++ C V           + W 
Sbjct: 206 HLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT 265

Query: 309 KDGVQIMNN-----QHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQK 362
            DG +  +       + S+SH  T DE     L +  +        Y C A +  G   K
Sbjct: 266 IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK 325

Query: 363 EIEL 366
             ++
Sbjct: 326 AAKV 329

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 84.2 bits (207), Expect = 3e-18
 Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 39/208 (18%)

Query: 186 SDNSTRSVIVSEGQTVYLYC-----------YANGFPAPTISWRRDNSAALSTGGSIYR- 233
             ++ R + V E +   + C                   T+ W              +R 
Sbjct: 10  GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRL 69

Query: 234 --------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ 285
                    ++L        D G Y C+ +N      K    +EV        +  +   
Sbjct: 70  PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPV 128

Query: 286 ALQYDA---------ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
              Y            ++ +  +   P I W     +I N  +               +L
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI---------PEGMNL 179

Query: 337 RVITIERRQFGQYACKAANKYGSAQKEI 364
             +       G Y C            +
Sbjct: 180 SFLIALISNNGNYTCVVTYPENGRTFHL 207

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 76.8 bits (188), Expect = 9e-16
 Identities = 28/199 (14%), Positives = 50/199 (25%), Gaps = 49/199 (24%)

Query: 91  DLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150
           ++      +    + W       +     I    +L                        
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLI-------------------- 183

Query: 151 IQETDAGIYKCEVIISLNNK---VSAEVELIV------RRPPIISD-NSTRSVIVSEGQT 200
              ++ G Y C V    N +   ++  + + V        PP+I   N         G+ 
Sbjct: 184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 243

Query: 201 VYLYCYA----NGFPAPTISWRRDNS--------------AALSTGGSIYRGNILKIPNI 242
           + + C             + W  D                 + S      R  IL I  +
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303

Query: 243 TKTDRGT-YYCVAQNGVGR 260
           T  D    Y C A++  G 
Sbjct: 304 TSEDLKRSYVCHARSAKGE 322

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  134 bits (338), Expect = 1e-35
 Identities = 35/250 (14%), Positives = 73/250 (29%), Gaps = 29/250 (11%)

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
           DS+ +   +   +      K + E      +C     L  +    +  I       +  +
Sbjct: 177 DSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELG-RECTRLFTIDLNQTPQT--T 233

Query: 190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSA----------ALSTGGSIYRGNILK 238
              + +  G+ +++ C A +      ++W  +N A            ST  ++ R     
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECH 296
           + ++ + D G Y C +     +    +  V +     I      +   +    +      
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349

Query: 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
            +AYP     W          Q             +  S+      + Q G+Y   A N 
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAEND 400

Query: 357 YGSAQKEIEL 366
                K   L
Sbjct: 401 DAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  130 bits (329), Expect = 2e-34
 Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 20/224 (8%)

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
             +     +  Y         +       L  +    + +    +V V    ++ L    
Sbjct: 19  NNDSSVGKSSSYPMVS----ESPEDLGCALRPQSSGTVYE--AAAVEVDVSASITLQVLV 72

Query: 208 NGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNITKTDRGTYYCVAQNGVGRGMKR 264
           +     +  W   +S+         +      + I  +T+T  G Y    Q+        
Sbjct: 73  DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132

Query: 265 NIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSH 324
              V +    + T+ RP   + ++    L C  E+ P P + W+    Q           
Sbjct: 133 -FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQG---------E 181

Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368
               +  +        +         C A N+ G     +   D
Sbjct: 182 SCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID 225

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  128 bits (323), Expect = 1e-33
 Identities = 42/300 (14%), Positives = 92/300 (30%), Gaps = 32/300 (10%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLI 127
             ++    Y +     D++ +  L+  V  A      +W+                 S +
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFK--------------HSSL 89

Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPI 184
                F L      S   + I ++ ET AG Y   +     ++    +    + +R   +
Sbjct: 90  NCQPHFDLQNRGVVS---MVILKMTETQAGEYLLFI----QSEATNYTILFTVSIRNTLL 142

Query: 185 ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK 244
            +          E Q   L C +   P P + W   +S   S           +   + +
Sbjct: 143 YT-LRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200

Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECH-VEAYPPP 303
                  C A+N +GR   R   +++          P+    +     + C  V      
Sbjct: 201 LFGTDIRCCARNELGRECTRLFTIDL--NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258

Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT-IERRQFGQYACKAANKYGSAQK 362
            + W  +   +    ++ +S ++T+          ++ + R   G Y C ++     +  
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  110 bits (275), Expect = 5e-27
 Identities = 24/216 (11%), Positives = 58/216 (26%), Gaps = 25/216 (11%)

Query: 65  SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMS 123
            L +     T      +    + +   ++C   + +    + W                 
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--------------E 265

Query: 124 GSLIIHDSRFQLTTDPETSTYI----LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
              +   + F+++T     T I      +  +   D G Y C      +   S    + +
Sbjct: 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSS----SKHPSQSALVTI 321

Query: 180 RRPP-IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238
                I + NS+    + + +          +P    +W     +       +  G  + 
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS 381

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
                K   G Y   A+N   +   +   + +    
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 75.9 bits (186), Expect = 3e-15
 Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 17/149 (11%)

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILE 294
           K  + +     +Y  V+++    G     A+  + +  +                   L+
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSA----SITLQ 69

Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
             V+A    + +W+     +    H+ +            S+ ++ +   Q G+Y     
Sbjct: 70  VLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQ 123

Query: 355 NKYGSAQKEIELFDRETQTGDETFPIFYA 383
           ++  +      +  R T       P F  
Sbjct: 124 SEATNYTILFTVSIRNTLLYTLRRPYFRK 152

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  132 bits (332), Expect = 1e-35
 Identities = 53/325 (16%), Positives = 94/325 (28%), Gaps = 48/325 (14%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLI 127
            +R   I  +S        +     C +   +    + W K D+       P+S   +  
Sbjct: 7   KEREEKIILVSSAN-----EIDVRPCPLNPNEHKGTITWYKDDS-----KTPVSTEQASR 56

Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPII- 185
           IH                L     +  D+G Y C V  S    ++    + +   P +  
Sbjct: 57  IH-----------QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105

Query: 186 SDNSTRSVIVSEGQTVYLYC------YANGFPAPTISWRRDNSAALSTGGSI-YRGNILK 238
           +  +     +       L C             P + W +D    L          + L 
Sbjct: 106 NAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI 165

Query: 239 IPNITKTDRGTYYCVAQN---GVGRGMKRNIAVEV-----EFAPVITINRPRQGQALQ-Y 289
           + N+ +  RG Y C A     G    + R I            PVI        +     
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGS 225

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT----SDEFSDTSLRVITIERRQ 345
              L C+V         W  +G  I  +       + +    +++   T + V+ I   +
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285

Query: 346 F----GQYACKAANKYGSAQKEIEL 366
                  + C A N +G     I+L
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 84.0 bits (207), Expect = 2e-18
 Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 53/231 (22%)

Query: 64  ISLASSQRTPTISYISQ---EQIKDIAQTADLKCSVQY---ADDYP---VIWMKMDTAKK 114
           IS    +  P + Y +Q   +Q   +A    L C        ++     + W        
Sbjct: 92  ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW-------Y 144

Query: 115 MEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---V 171
            +  P+ +                       L +  + E   G Y C    +   K   +
Sbjct: 145 KDCKPLLLDNIHFSGVKD------------RLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192

Query: 172 SAEVELIV-----RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--- 223
           +  +E I         P+I   +  ++ V  G  + L C   G  +    W+ + S    
Sbjct: 193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252

Query: 224 -------------ALSTGGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260
                          +         +L I  I     +  + C A+N  G 
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 303

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  127 bits (322), Expect = 1e-35
 Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 23/179 (12%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNIT 243
             + VS+GQ V L C   G   P I W +D  A +     +Y           L + ++ 
Sbjct: 10  VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDG-AVVQNLDQLYIPVSEQHWIGFLSLKSVE 68

Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP 303
           ++D G Y+C  ++G    + + + + VE  P  T+              L C     P P
Sbjct: 69  RSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP 128

Query: 304 A-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
             IVW +   +I                 S + L V  +   Q   ++C+A N  G A 
Sbjct: 129 VTIVWWRGTTKI------------GGPAPSPSVLNVTGVT--QSTMFSCEAHNLKGLAS 173

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  106 bits (266), Expect = 1e-27
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 21/201 (10%)

Query: 72  TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS 131
              +     +      Q   L CSV+  ++  + W+K               G+++ +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK--------------DGAVVQNLD 47

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR 191
           +  +    +     LS+K ++ +DAG Y C+V      ++S  V L V   P  +    +
Sbjct: 48  QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP-K 106

Query: 192 SVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
            + V       L C A G P P TI W R  +     GG     ++L +  +  T    +
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTT---KIGGPAPSPSVLNVTGV--TQSTMF 161

Query: 251 YCVAQNGVGRGMKRNIAVEVE 271
            C A N  G    R   V ++
Sbjct: 162 SCEAHNLKGLASSRTATVHLQ 182

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  132 bits (334), Expect = 2e-35
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 18/197 (9%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----------- 229
           +P II     ++    E   V L C A G P P I+W+R       T G           
Sbjct: 1   QPHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57

Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY 289
             +  + L I ++  +D G Y C A + +G G ++++ +++E+AP    N+         
Sbjct: 58  GQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGN 116

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              + C V++ PP +I W +D + +      ++  ++T  +     L +       FG+Y
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK---MILEIAPTSDNDFGRY 173

Query: 350 ACKAANKYGSAQKEIEL 366
            C A N  G+  +E  L
Sbjct: 174 NCTATNHIGTRFQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  103 bits (259), Expect = 6e-25
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 28/198 (14%)

Query: 88  QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
               L C    A+  P   + W +            + +      D R ++     +S+ 
Sbjct: 16  GQVTLVCD---AEGEPIPEITWKRAVD-------GFTFTEGDKSLDGRIEVKGQHGSSS- 64

Query: 145 ILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVY 202
            L IK+++ +D+G Y CE     +        + L +   P    N T      EG  + 
Sbjct: 65  -LHIKDVKLSDSGRYDCEAA---SRIGGHQKSMYLDIEYAPKFISNQT-IYYSWEGNPIN 119

Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITKTDRGTYYCVAQN 256
           + C     P  +I WRRD     +   +  +        IL+I   +  D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179

Query: 257 GVGRGMKRNIAVEVEFAP 274
            +G    +   + +   P
Sbjct: 180 HIGT-RFQEYILALADVP 196

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 29/197 (14%), Positives = 51/197 (25%), Gaps = 27/197 (13%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P                 ++ C V+      + W +         LP         + + 
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDK-----LVLPAK-------NTTN 148

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP------IIS 186
            +  +        L I    + D G Y C     +      E  L +   P       I 
Sbjct: 149 LKTYSTGRKMI--LEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYGVKII 205

Query: 187 DNSTRSVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALSTGGSIYRGNILKIPNITK 244
           + S  +  VS  +         G P     +  +   S       S     ++ + N+  
Sbjct: 206 ELSQTTAKVSFNKP----DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEP 261

Query: 245 TDRGTYYCVAQNGVGRG 261
                    A NG G+G
Sbjct: 262 NTTYEIRVAAVNGKGQG 278

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  127 bits (320), Expect = 3e-35
 Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 15/198 (7%)

Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR--- 233
           +  + P        +SV+V EG T     + +GFP P +SW RD     ++     +   
Sbjct: 1   MTTQAPTFTQ--PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF 58

Query: 234 ---GNILKIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQ- 288
                 L IP +TK + G Y   A NG G+      + V+ E AP   + R +     Q 
Sbjct: 59  SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQG 118

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
               L+  V   P P + + +DG +I ++  + +S           SL +        G 
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL-----YSLLIAEAYPEDSGT 173

Query: 349 YACKAANKYGSAQKEIEL 366
           Y+  A N  G A    EL
Sbjct: 174 YSVNATNSVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 97.9 bits (244), Expect = 2e-24
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 33/204 (16%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLI 127
           + + PT +   Q  +     TA  +  +      P + W +               G +I
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFR--------------DGQVI 46

Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRR--- 181
              +   +          L+I  + + ++G Y  +      N     ++  EL+V+    
Sbjct: 47  STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA----TNGSGQATSTAELLVKAETA 102

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI-- 236
           PP       +S+ V +G  V L     G P P + + RD +  + +         G++  
Sbjct: 103 PPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA-EIQSSLDFQISQEGDLYS 160

Query: 237 LKIPNITKTDRGTYYCVAQNGVGR 260
           L I      D GTY   A N VGR
Sbjct: 161 LLIAEAYPEDSGTYSVNATNSVGR 184

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  126 bits (319), Expect = 3e-35
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 19/196 (9%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYR------ 233
           R   +         +S G++ +  C   G      ISW   N   LS             
Sbjct: 1   RVLQVD-IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

Query: 234 -GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAI 292
             + L I N    D G Y CV     G   +  + V++    +       Q      DA+
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119

Query: 293 LECHVEAYPPPAIVWIKDGVQIM--NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
           + C V +  PP I+W   G  ++   +  + V         S+  L++  I++   G Y 
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--------LSNNYLQIRGIKKTDEGTYR 171

Query: 351 CKAANKYGSAQKEIEL 366
           C+            ++
Sbjct: 172 CEGRILARGEINFKDI 187

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  119 bits (301), Expect = 1e-32
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 19/205 (9%)

Query: 71  RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIH 129
           R   +  +  +    + ++    C V        I W   +             G  +  
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-------------GEKLSP 47

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
           + +       +  +  L+I      DAGIYKC V      +  A V + + +  +  +  
Sbjct: 48  NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTD 246
           T      EG+   + C       PTI W+      +        +   N L+I  I KTD
Sbjct: 108 T-PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166

Query: 247 RGTYYCVAQNGVGRGMK-RNIAVEV 270
            GTY C  +      +  ++I V V
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIV 191

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  129 bits (326), Expect = 9e-35
 Identities = 51/297 (17%), Positives = 84/297 (28%), Gaps = 33/297 (11%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +    KC     +D  +     D    +                + +   +       L 
Sbjct: 45  EPFSAKCPP--IEDSLLSHRYNDKDNVVNWE----------KIGKTRRPLNRRVKNGDLW 92

Query: 148 IKEIQETDAG-IYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC- 205
           I      D+   Y C V     + V   V   +R+PP      T  +   +   + LYC 
Sbjct: 93  IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI-PETYELGTHDKYGIDLYCG 151

Query: 206 YANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263
                    I+W ++N   L   G+ Y   G  L I N    D G Y C         +K
Sbjct: 152 ILYAKHYNNITWYKNNQ-ELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDV-RIK 209

Query: 264 RNIAVEV---------EFAPVITINRPRQGQALQYDAILECHVEAYP----PPAIVWIKD 310
            +I V           +      I  P+    +   A + C   +         I W   
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269

Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ-YACKAANKYGSAQKEIEL 366
              I+       S   +S   ++ +L    +     G  Y C+  N Y        +
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  102 bits (256), Expect = 5e-25
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 20/196 (10%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANG---------FPAPTISWRRDNSAALSTGGSIY 232
            P      T + + + G+     C                  ++W +           + 
Sbjct: 28  NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87

Query: 233 RGNILKIPNITKTDRGTYY-CVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDA 291
            G+ L I N T  D    Y C      G  ++  +   +   P         G   +Y  
Sbjct: 88  NGD-LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146

Query: 292 ILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
            L C +  A     I W K+  +++ +                 +L +   E    G+Y 
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--------GQNLIIHNPELEDSGRYD 198

Query: 351 CKAANKYGSAQKEIEL 366
           C         + +I +
Sbjct: 199 CYVHYDDVRIKNDIVV 214

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 87.6 bits (216), Expect = 2e-19
 Identities = 37/224 (16%), Positives = 62/224 (27%), Gaps = 42/224 (18%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
           ++ P+    + E         DL C + YA  Y  I W K +         + + G+   
Sbjct: 126 RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ-------ELIIDGTKYS 178

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-------VSAEVELIVRR 181
              +             L I   +  D+G Y C V                  + +I  +
Sbjct: 179 QSGQ------------NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ 226

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP----TISWRRDNSAALSTGGSIY----- 232
                      + V+ G+   + C A           I W   +   +     +Y     
Sbjct: 227 DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS 286

Query: 233 ----RGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEVE 271
                   L   N+T+   G TY C   N           V +E
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  124 bits (313), Expect = 5e-34
 Identities = 36/205 (17%), Positives = 56/205 (27%), Gaps = 35/205 (17%)

Query: 172 SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI 231
                 +V R   I+  +  S  V  GQ V L C A G P     W + N   +  G   
Sbjct: 8   HHHSSGLVPRGSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK-EIPNG--- 62

Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY-- 289
              + L    +   D G Y C   N       +   ++V   P             +   
Sbjct: 63  -NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQI 121

Query: 290 -------------DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
                          +L+C     P P   W K+ + + +               +    
Sbjct: 122 CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------------TKKLY 167

Query: 337 RVITIERRQFGQYACKAANKYGSAQ 361
            V  ++    G Y C   N   S  
Sbjct: 168 MVPYVDLEHQGTYWCHVYNDRDSQD 192

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  110 bits (276), Expect = 1e-28
 Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 50/225 (22%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSL 126
            R   I+   + +     Q   L C    A  +P     W KM+     + +P   +  L
Sbjct: 16  PRGSKITVNPESKAVLAGQFVKLCCR---ATGHPFVQYQWFKMN-----KEIPNGNTSEL 67

Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
           I +                     +   DAG Y C V  +   + S   +L V   P   
Sbjct: 68  IFNA--------------------VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107

Query: 187 DNST--------------RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232
             S                S  +  G T+ L C A G P P   W ++          + 
Sbjct: 108 QRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL- 166

Query: 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
                 +P +    +GTY+C   N       + + + ++    + 
Sbjct: 167 ----YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 31/128 (24%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
             I      Q      T  L+C    A   P     W K +      PL        ++ 
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNE-----LPLTHETKKLYMVP 170

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
                                +     G Y C V    +++ S +VE+I+     +    
Sbjct: 171 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210

Query: 190 TRSVIVSE 197
            +     +
Sbjct: 211 NKEQTTDQ 218

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  126 bits (317), Expect = 1e-33
 Identities = 44/330 (13%), Positives = 91/330 (27%), Gaps = 61/330 (18%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
           P    +      D   + + +C            W K                       
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDK--MTPKSEFSWSK--------------DYVSTEDSP 47

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEV-----------IISLNNKVSAEVELIVR 180
           R ++ +    +   ++ K++   D GIY C+V           I     K    +    +
Sbjct: 48  RLEVESKGNKTK--MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----- 235
            P +   +     I+ +GQ  +            +++  +              +     
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 165

Query: 236 -ILKIPNITKTDRGTYYCVAQNGVGRGM-----------KRNIAVEVEFAPVITINRPRQ 283
             + +  +   D GTY    Q+G                K     E +    I    P  
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225

Query: 284 GQALQY------DAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
            + L +      + +L+C V        IVW KD  +I  ++ +              +L
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTL 278

Query: 337 RVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +    ++  G Y     +  G  +  ++L
Sbjct: 279 LITEFSKKDAGIYEVILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 93.1 bits (231), Expect = 1e-21
 Identities = 25/208 (12%), Positives = 60/208 (28%), Gaps = 27/208 (12%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRG 234
            P   +    +V      ++   C     P    SW +D  +        + + G+  + 
Sbjct: 3   DPFTKEVV-VNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK- 59

Query: 235 NILKIPNITKTDRGTYYCVAQNGVG---------RGMKRNIAVEVEF-APVITINRPRQG 284
             +   ++   D G Y C   +  G           +KR +A+  E   P + +      
Sbjct: 60  --MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117

Query: 285 QALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
           + L+           +      + +I +  +I     Y +             + +  ++
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI---DRNTGIIEMFMEKLQ 174

Query: 343 RRQFGQYACKAANKYGSAQKEIELFDRE 370
               G Y  +  +   +    + L    
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVVLVGDV 202

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 87.7 bits (217), Expect = 1e-19
 Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 43/229 (18%)

Query: 57  IVALSFLISLASSQRTPTISYISQEQIKDIAQ-TADLKCSVQYADDYP-VIWMKMDTAKK 114
              L  L++L+   + PT+   S+  ++ + +         +       V ++       
Sbjct: 91  EEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF------ 144

Query: 115 MEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAE 174
                   +   I    ++++  D  T    + ++++Q+ D G Y  ++    + K +  
Sbjct: 145 --------NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ---DGKATNH 193

Query: 175 --VELIVRRPPIISDNST-----------------RSVIVSEGQTVYLYCYANGFPAPT- 214
             V L+      +   +                   S  V+    V L C        T 
Sbjct: 194 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETH 253

Query: 215 ISWRRDNSAALSTGGSIY---RGNILKIPNITKTDRGTYYCVAQNGVGR 260
           I W +D    +S             L I   +K D G Y  + ++  G+
Sbjct: 254 IVWYKDER-EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 301

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  122 bits (308), Expect = 2e-33
 Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNIT 243
           R++ V       L C   G P P + W R     +   G  YR        + L I ++T
Sbjct: 12  RNLNVRYQSNATLVCKVTGHPKPIVKWYRQG-KEIIADGLKYRIQEFKGGYHQLIIASVT 70

Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-------YDAILECH 296
             D   Y   A N  G  +    ++EVE      I+ P+  + +            ++  
Sbjct: 71  DDDATVYQVRATNQGGS-VSGTASLEVEVPA--KIHLPKTLEGMGAVHALRGEVVSIKIP 127

Query: 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
               P P I W K    I NN HY V           + +    +ER+  G Y   A N+
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 357 YGSAQKEIEL 366
           +G  QK +EL
Sbjct: 184 FGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.0 bits (234), Expect = 6e-23
 Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 34/202 (16%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P      +         A L C V      P++ W +               G  II D 
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYR--------------QGKEIIADG 49

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIIS-- 186
                 + +   + L I  + + DA +Y+        N+   VS    L V  P  I   
Sbjct: 50  LKYRIQEFKGGYHQLIIASVTDDDATVYQVRA----TNQGGSVSGTASLEVEVPAKIHLP 105

Query: 187 --DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGN----ILK 238
                  +V    G+ V +    +G P P I+W++     +   G   +        ++ 
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD-LIDNNGHYQVIVTRSFTSLVF 164

Query: 239 IPNITKTDRGTYYCVAQNGVGR 260
              + + D G Y   A+N  G 
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGI 186

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  122 bits (308), Expect = 3e-33
 Identities = 47/198 (23%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GN 235
              PP I     ++  V  G     YC A G P P+I WR++      T           
Sbjct: 3   GAHPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 236 ILKIPNITKT----DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ--- 288
            + I  I       D   Y CVA+NGVG  +  +  + +          P   Q      
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 289 ----YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIER 343
               +  ++ C     P P I WIK+  ++ M+N  YS+          D  L++     
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---------KDGFLQIENSRE 172

Query: 344 RQFGQYACKAANKYGSAQ 361
              G+Y C A N  G+  
Sbjct: 173 EDQGKYECVAENSMGTEH 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  107 bits (268), Expect = 1e-27
 Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 26/220 (11%)

Query: 68  SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSL 126
           +    P I    Q Q   +   A   C+ +  D  P I W K           +S +   
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGK-------KVSGT--- 50

Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNKVSAEVELIV------ 179
               SR+ +         IL I+ ++   D   Y+C     + + VSA+  L +      
Sbjct: 51  ---QSRYTVLEQ-PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT 106

Query: 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-ALSTGGSIYRGNIL 237
               P+I+     + ++  G TV + C A G P P I W ++ +   +S      +   L
Sbjct: 107 PAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL 165

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
           +I N  + D+G Y CVA+N +G    +   + V+   V T
Sbjct: 166 QIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGT 205

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  121 bits (305), Expect = 5e-33
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-----YRGNILKIPNITKT 245
           + V    G+   L C   G P P I W R     L            R + L +    + 
Sbjct: 15  KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFG-KELIQSRKYKMSSDGRTHTLTVMTEEQE 73

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY---DAILECHVEAYPP 302
           D G Y C+A N VG  ++ +  + ++  P      P + +          L       P 
Sbjct: 74  DEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV 132

Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ 361
           PA+ W      + N+++ ++ +         T L +  ++R+   G+Y  + +N +G+  
Sbjct: 133 PAMTWFHGQKLLQNSENITIENTEHY-----THLVMKNVQRKTHAGKYKVQLSNVFGTVD 187

Query: 362 KEIEL 366
             +++
Sbjct: 188 AILDV 192

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  102 bits (256), Expect = 5e-26
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 36/200 (18%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
           P I    ++    + + A L C +      P   + W +               G  +I 
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIV---GRPLPDIKWYR--------------FGKELIQ 50

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISD 187
             ++++++D  T T  L++   ++ D G+Y C      N   +V    +L+++  P    
Sbjct: 51  SRKYKMSSDGRTHT--LTVMTEEQEDEGVYTCIAT---NEVGEVETSSKLLLQATPQFHP 105

Query: 188 NST--RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIP 240
                     + G T+ L+    G P P ++W       L    +I          L + 
Sbjct: 106 GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQK-LLQNSENITIENTEHYTHLVMK 164

Query: 241 NIT-KTDRGTYYCVAQNGVG 259
           N+  KT  G Y     N  G
Sbjct: 165 NVQRKTHAGKYKVQLSNVFG 184

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  122 bits (307), Expect = 2e-32
 Identities = 38/286 (13%), Positives = 70/286 (24%), Gaps = 34/286 (11%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            T  L CS       PV+W +M      E                        T + +L+
Sbjct: 16  STFVLTCSG----SAPVVWERMSQEPPQE-----------------MAKAQDGTFSSVLT 54

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV-----RRPPIISDNSTRSVIVSEGQTVY 202
           +  +   D G Y C    S   +      L +         + +D     + ++E   + 
Sbjct: 55  LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEIT 114

Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262
           + C     P   ++               ++     I      +  +Y C    G     
Sbjct: 115 IPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGI-----FEDRSYICKTTIGDREVD 168

Query: 263 KRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
                V       I ++       ++   +  L C V         W     +       
Sbjct: 169 SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP 228

Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                        + L + + E    G Y C         Q E  +
Sbjct: 229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 82.4 bits (203), Expect = 6e-18
 Identities = 21/184 (11%), Positives = 45/184 (24%), Gaps = 28/184 (15%)

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNITKT 245
               ++++   T  L C  +      + W R +            G    +L + N+T  
Sbjct: 6   PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61

Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAP-----VITINRPRQGQALQY-DAILECHVEA 299
           D G Y+C   +  G        + +         +            +  +  + C V  
Sbjct: 62  DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD 121

Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
            P   +   +    +     Y      +     +               Y CK       
Sbjct: 122 -PQLVVTLHEKKGDVALPVPYDHQRGFSG--IFED------------RSYICKTTIGDRE 166

Query: 360 AQKE 363
              +
Sbjct: 167 VDSD 170

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  122 bits (308), Expect = 2e-32
 Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 17/197 (8%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI------YRGN 235
            P   +   R++ V       L C   G P P + W R     ++ G            +
Sbjct: 4   APHFKEEL-RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY-----D 290
            L I ++T  D   Y   A N  G       ++EVE    I + +  +G    +      
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
             ++      P P I W K    I NN HY V           + +    +ER+  G Y 
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDAGFYV 177

Query: 351 CKAANKYGSAQKEIELF 367
             A N++G  QK +EL 
Sbjct: 178 VCAKNRFGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 24/182 (13%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
             A L C V       V W +               G  II D       + +   + L 
Sbjct: 20  SNATLVCKVTGHPKPIVKWYR--------------QGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII----SDNSTRSVIVSEGQTVYL 203
           I  + + DA +Y+     +    VS    L V  P  I    +     +V    G+ V +
Sbjct: 66  IASVTDDDATVYQVRAT-NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124

Query: 204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGN-----ILKIPNITKTDRGTYYCVAQNGV 258
               +G P P I+W++      + G            ++    + + D G Y   A+N  
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184

Query: 259 GR 260
           G 
Sbjct: 185 GI 186

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  122 bits (307), Expect = 6e-32
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 10/190 (5%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN---SAALSTGGSIYRGNILK 238
                     +  V  G  V L C   G       W       SA +   G +    +  
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE 298
               +  +R    C A+N VGR  + ++ V V F   + ++   +     +   +   V+
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQLHTAVE----MHHWCIPFSVD 271

Query: 299 AYPPPAIVWIKDGVQIMNNQHY--SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
             P P++ W+ +G  +             A ++      LR+        G Y   AAN 
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331

Query: 357 YGSAQKEIEL 366
           +G A   I  
Sbjct: 332 FGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 85.2 bits (210), Expect = 1e-18
 Identities = 31/216 (14%), Positives = 54/216 (25%), Gaps = 41/216 (18%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           PT+         D+     L+C V+        W+  +                     +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTE-------------LEQSATVMK 205

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNS 189
                               + +     C       N V      V++ V  P  +    
Sbjct: 206 SGGLPSLGL----TLANVTSDLNRKNVTCWA----ENDVGRAEVSVQVNVSFPASVQL-- 255

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG-----------GSIYRGNILK 238
                  E     +    +G PAP++ W  + S    T                R   L+
Sbjct: 256 ---HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 312

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
           +   T  + G Y  +A N  G+    +I       P
Sbjct: 313 LNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  118 bits (298), Expect = 8e-32
 Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 12/199 (6%)

Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232
           A +    + P II       ++V + +   L C   G P PTI W +D     +     +
Sbjct: 1   APLAGQYQSPRIIE--HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH 58

Query: 233 RGNI--------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EFAPVITINRPRQ 283
           R             +    + D G Y+CVA+N VG+ + R+ ++++        +     
Sbjct: 59  RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118

Query: 284 GQALQYDAILECH-VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
             A    A+LEC   +  P P ++WIKDGV + + +  S    +        +L +  +E
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178

Query: 343 RRQFGQYACKAANKYGSAQ 361
               G Y C A N  G+ +
Sbjct: 179 PIDEGNYKCIAQNLVGTRE 197

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 34/228 (14%)

Query: 66  LASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISM 122
           LA   ++P I     + +    + A L C     +  P   + W K          P+S 
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCK---VEGKPEPTIEWFKDGE-------PVST 52

Query: 123 SGSLIIHDSRFQLTTDPETSTYILS-IKEIQETDAGIYKCEVIISLNNKVSAEVELIV-- 179
           +      + +       + + +    ++  +E D G Y C     +   VS    L +  
Sbjct: 53  N------EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGS-------- 230
            R         +   V++G+T  L C    G P PT+ W +D                  
Sbjct: 107 LRDDFRV--EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

Query: 231 -IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
            I  G  L I N+   D G Y C+AQN VG        + V+      
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           +TA L+C        P + W+K        PL   +        SR ++          L
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDG-----VPLD-DLKAMSFGASSRVRIVDG-----GNL 172

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
            I  ++  D G YKC     +  + S+  +LIV+       + 
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  117 bits (295), Expect = 3e-31
 Identities = 45/218 (20%), Positives = 74/218 (33%), Gaps = 24/218 (11%)

Query: 169 NKVSAEVELIVRRPPIIS---DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL 225
           + VS       +R P  +       R   V    TV   C A G P PT+ W ++     
Sbjct: 4   DFVSENSN--NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE-F 60

Query: 226 STGGSIYR------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV----EFAPV 275
                I           L + ++  +D+G Y CV +N  G  +     ++V       P+
Sbjct: 61  KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPI 119

Query: 276 ITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIM------NNQHYSVSHFATS 328
           +    P     +   D    C V +   P I WIK   +           +  V   +  
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179

Query: 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           +  +   L +  +     G+Y CK +N  G A +   L
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 90.7 bits (225), Expect = 3e-21
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 51/222 (22%)

Query: 68  SSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPI 120
           +++R P  +   + + +  A     T   +C    A   P   + W+K            
Sbjct: 11  NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP---AGGNPMPTMRWLK------------ 55

Query: 121 SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVEL 177
             +G     + R           + L ++ +  +D G Y C V     N+   ++    L
Sbjct: 56  --NGKEFKQEHRIGGYKV-RNQHWSLIMESVVPSDKGNYTCVV----ENEYGSINHTYHL 108

Query: 178 IV----RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---- 229
            V    R  PI+      +     G  V   C       P I W +      S  G    
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168

Query: 230 -----------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
                      +     +L + N+T+ D G Y C   N +G+
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 253 VAQNGVGRGMKRNIAVEVEFAPVIT--INRPRQGQALQY--DAILECHVEAYPPPAIVWI 308
           +A++ V            + AP  T      ++  A+         C     P P + W+
Sbjct: 1   MAEDFVSE------NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWL 54

Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           K+G +                     SL + ++     G Y C   N+YGS      L
Sbjct: 55  KNGKEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  118 bits (296), Expect = 5e-31
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 19/226 (8%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
           +TST    I      D+G Y+C+      +  S  ++L + R  ++   S+R  + +EG+
Sbjct: 44  QTSTPSYRITSASVNDSGEYRCQRG---LSGRSDPIQLEIHRGWLLLQVSSR--VFTEGE 98

Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
            + L C+A        + + R+  A        +  + L I     +  GTY+C      
Sbjct: 99  PLALRCHAWKDKLVYNVLYYRNGKAF----KFFHWNSNLTILKTNISHNGTYHCSGMGKH 154

Query: 259 G-RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN 317
                  ++ V+  F   +                L C  +       + +         
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF---YM 211

Query: 318 QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
              ++    TS E      +++T  R   G Y C+AA + G+  K 
Sbjct: 212 GSKTLRGRNTSSE-----YQILTARREDSGLYWCEAATEDGNVLKR 252

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 91.1 bits (226), Expect = 3e-21
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 28/187 (14%)

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPN 241
            +I+      V V + +TV L+C     P   +  W  + +A  ++  S       +I +
Sbjct: 2   AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------YRITS 54

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILECHVEA- 299
            +  D G Y C           R+  +++E      + +       + +   L CH    
Sbjct: 55  ASVNDSGEYRCQRGLS-----GRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109

Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
                +++ ++G                     +++L ++       G Y C    K+  
Sbjct: 110 KLVYNVLYYRNGKAFKFFH-------------WNSNLTILKTNISHNGTYHCSGMGKHRY 156

Query: 360 AQKEIEL 366
               I +
Sbjct: 157 TSAGISV 163

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 84.6 bits (209), Expect = 6e-19
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVI 194
                   L+I +   +  G Y C  +       SA + + V+     P+++  ++ +  
Sbjct: 125 KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYT-SAGISVTVKELFPAPVLN--ASVTSP 181

Query: 195 VSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
           + EG  V L C        P +           T       +  +I    + D G Y+C 
Sbjct: 182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCE 241

Query: 254 AQNGVGRGMKRNIAVEV 270
           A    G  +KR+  +E+
Sbjct: 242 AATEDGNVLKRSPELEL 258

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  115 bits (289), Expect = 2e-30
 Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 18/185 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNILKIPNI-TK 244
                  G      C A G P P I W +      +    +       G++L+I  + T 
Sbjct: 14  VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTP 73

Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-------YDAILECHV 297
            D   Y CVA N VG  +  +  + V     I    P      Q         A + C  
Sbjct: 74  RDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA 132

Query: 298 EAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
              P P I W KD + +  +N +  +    +       +L++   E    G+Y C A N 
Sbjct: 133 SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSES---IGALQIEQSEESDQGKYECVATNS 189

Query: 357 YGSAQ 361
            G+  
Sbjct: 190 AGTRY 194

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 94.5 bits (235), Expect = 7e-23
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 44/220 (20%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
           P  +    +Q       A   C        P   ++W K                   + 
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQA---TGDPRPKIVWNKKGKK---------------VS 48

Query: 130 DSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNK---VSAEVELIVRRPPII 185
           + RF++    + S  +L I+ ++   D  IY+C      +N    +S    L V R   I
Sbjct: 49  NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA----SNNVGEISVSTRLTVLREDQI 104

Query: 186 S------DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI--- 236
                  D   +  +V   +T  + C A+G P P I+W +D    + T  +  R      
Sbjct: 105 PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP-VDTSNNNGRIKQLRS 163

Query: 237 -----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
                L+I    ++D+G Y CVA N  G        + V 
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 269 EVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
             E  P  T   P     +    A   C     P P IVW K G ++ N +   +     
Sbjct: 2   TGETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI----- 55

Query: 328 SDEFSDTSLRVITIERRQF----GQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
             EF D S  V+ I+  +       Y C A+N  G       L           FP  
Sbjct: 56  --EFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTI 111

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
           +  PTI    Q ++ +  +TA + C+    +  P I W K        P+  S       
Sbjct: 106 RGFPTIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDF-----LPVDTS------- 152

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
            ++  ++      S   L I++ +E+D G Y+C    S   + SA   L VR   
Sbjct: 153 -NNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  117 bits (295), Expect = 3e-30
 Identities = 44/320 (13%), Positives = 84/320 (26%), Gaps = 63/320 (19%)

Query: 88  QTADLKCSVQY----ADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPE 140
           +   L+C        A   P   + W K D         +       +            
Sbjct: 34  EPVALRCPQVPYWLWASVSPRINLTWHKND-----SARTVPGEEETRMW----------- 77

Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIV-RRPPIISDNSTRSVIVS 196
                L +    + D+G Y C       N        +EL V           +   I++
Sbjct: 78  AQDGALWLLPALQEDSGTYVCTT----RNASYCDKMSIELRVFENTDAFLPFISYPQILT 133

Query: 197 EGQTVYLYC-----YANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRG 248
              +  L C     +        I W +D+           S+     L + ++   D G
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAG 193

Query: 249 TYYCVAQNGVGRG---MKRNIAVEV-----EFAPVITINRPRQGQALQY--DAILECHVE 298
            Y CV           + R+I + +     E  PVI    P +  +        + C V 
Sbjct: 194 YYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII--SPLKTISASLGSRLTIPCKVF 251

Query: 299 A---YPPPAIVWIKDGVQIMNNQHYSV--------SHFATSDEFSDTSLRVITIERRQFG 347
                P   ++W       + + +            +   ++ + +  L    + R    
Sbjct: 252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLH 311

Query: 348 -QYACKAANKYGSAQKEIEL 366
             + C   N          +
Sbjct: 312 MDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  107 bits (269), Expect = 1e-26
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 25/195 (12%)

Query: 190 TRSVIVSEGQTVYLYC-------YANGFPAPTISWRRDNSAALSTGGSIYR----GNILK 238
            +     EG+ V L C       +A+  P   ++W +++SA    G    R       L 
Sbjct: 25  YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECH 296
           +    + D GTY C  +N      K +I + V       +      Q L      +L C 
Sbjct: 85  LLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP 143

Query: 297 -----VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
                        I W KD + +  +    +S          T L V  +     G Y C
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS------VRGTTHLLVHDVALEDAGYYRC 197

Query: 352 KAANKYGSAQKEIEL 366
                +   Q  I  
Sbjct: 198 VLTFAHEGQQYNITR 212

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 12/118 (10%)

Query: 71  RTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLI 127
             P I    +     +     + C V      P   ++W   +       +  +  G  +
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN----DTHIESAYPGGRV 280

Query: 128 IHDSRFQLTTDPE-TSTYILSIKEIQETDAGI-YKCEVIISLNNKVSAEVELIVRRPP 183
               R + + + E      L    +   D  + +KC V    N      +   V+   
Sbjct: 281 TEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV---HNTLSFQTLRTTVKEHH 335

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  114 bits (287), Expect = 3e-30
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 24/194 (12%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
           PP I +     +IVS+G+   L C A G P PTI W +     + T     R + + +P+
Sbjct: 9   PPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGG-ERVETDKDDPRSHRMLLPS 66

Query: 242 ------------ITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EFAPVITINRPRQGQALQ 288
                        ++ D G Y CVA+N +G  +  + ++EV         N      A+ 
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126

Query: 289 YDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
             A++EC     +P P I W KDG  + +                   L +    +   G
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT--------IRGGKLMITYTRKSDAG 178

Query: 348 QYACKAANKYGSAQ 361
           +Y C   N  G  +
Sbjct: 179 KYVCVGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 94.9 bits (236), Expect = 5e-23
 Identities = 57/221 (25%), Positives = 73/221 (33%), Gaps = 23/221 (10%)

Query: 65  SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPIS 121
           SL      P I     + I    + A L C    A+  P   + W K           + 
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYK-------GGERVE 51

Query: 122 MSGSLIIHDSRFQLTTDPETSTYILSIK--EIQETDAGIYKCEVIISLNNKVSAEVELIV 179
                   D R      P  S + L I        D G+Y C     L   VS +  L V
Sbjct: 52  TDK----DDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

Query: 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIY-RGNI 236
                    N    V+V+ G+   + C    G P PTISW++D S        I  RG  
Sbjct: 108 AILRDDFRQNP-SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
           L I    K+D G Y CV  N VG        + V   P   
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  114 bits (287), Expect = 5e-30
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 20/214 (9%)

Query: 172 SAEVELIVRRPPIIS--DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN-----SAA 224
             +  +    P          + + V    TV   C A G P P+ISW ++         
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61

Query: 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINR 280
           +      ++   L + ++  +DRG Y CV +N  G  +++   ++V       P++    
Sbjct: 62  IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL 120

Query: 281 PRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS------- 332
           P    A+   D    C V +   P I W+K      +      + + T  +         
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180

Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           D  LR+  +  R  G+Y C+A N  G A+K   L
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 95.0 bits (236), Expect = 9e-23
 Identities = 44/255 (17%), Positives = 74/255 (29%), Gaps = 57/255 (22%)

Query: 73  PTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGS 125
           P  +   +   K +A     T   +C    A   P   + W+K              +G 
Sbjct: 12  PYWTRPERMDKKLLAVPAANTVRFRCP---AAGNPTPSISWLK--------------NGR 54

Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIV--- 179
               + R           + L ++ +  +D G Y C V     NK   +     L V   
Sbjct: 55  EFRGEHRIGGIKL-RHQQWSLVMESVVPSDRGNYTCVV----ENKFGSIRQTYTLDVLER 109

Query: 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--------- 229
               PI+      +     G  V  +C       P I W +      S  G         
Sbjct: 110 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169

Query: 230 -------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR 282
                  S+     L++ N+++ D G Y C A N +G   ++   + V            
Sbjct: 170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEEELVE 228

Query: 283 QGQALQYDAILECHV 297
             +A      +  H 
Sbjct: 229 ADEA----GSVHHHH 239

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  112 bits (281), Expect = 1e-29
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 13/186 (6%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            T  L+C +Q   + P + W++           + ++ S        +   D       L
Sbjct: 18  LTGTLRCQLQVQGEPPEVHWLRDGQ-------ILELADSTQTQVPLGEDEQDDWIVVSQL 70

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
            I  +Q +D G Y+C V +     VS    + +   P           V+      L C 
Sbjct: 71  RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL-EEPEDRTVAANTPFNLSCQ 129

Query: 207 ANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
           A G P P  + W +D    L+T         L +P +      ++ C A N  G    R 
Sbjct: 130 AQGPPEPVDLLWLQDAV-PLATAPGHGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSRT 186

Query: 266 IAVEVE 271
             + V 
Sbjct: 187 ATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  110 bits (276), Expect = 6e-29
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 31/198 (15%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDN-------------SAALS 226
             P +   +  ++  + G T  L C        P + W RD                   
Sbjct: 2   ESPFVG--NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59

Query: 227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQA 286
                   + L+I ++  +D G Y C+   G    + +   V +E  P      P     
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTV 118

Query: 287 LQY-DAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
                  L C  +  P P  ++W++D V +     +              SL V  +   
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR----------SLHVPGLN-- 166

Query: 345 QFGQYACKAANKYGSAQK 362
           +   ++C+A N  G    
Sbjct: 167 KTSSFSCEAHNAKGVTTS 184

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  109 bits (274), Expect = 1e-28
 Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 94  CSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD--PETSTYILSIKEI 151
             V    +  V W K+   ++ + L   M   +I  +  F+   D     +T+ L +   
Sbjct: 16  RRVSLGPEIEVSWFKLGPGEE-QVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 74

Query: 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP 211
             +  G Y C + +    +V+ +  L V +P  +S   +      +   + + C  N FP
Sbjct: 75  NISHDGNYLCRMKLG-ETEVTKQEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFP 132

Query: 212 APTISWRRDNSAALSTGGSIYRGN--------ILKIPNITKTDRGTYYCVAQNGVG 259
            P + W        +   +             +    ++ K       CV +N   
Sbjct: 133 HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 88.9 bits (220), Expect = 5e-21
 Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 40/201 (19%)

Query: 193 VIVSEGQTVYLYCYA---NGFPAPTISWRRDNSAA------------------LSTGGSI 231
           V    G+ V L  Y    +  P   +SW +                             I
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 232 YR---GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
           +R      L +     +  G Y C  + G    + +   + V     ++++  R      
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDF 119

Query: 289 YDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
               + C V A+P P + W+     +      N               D SL V      
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE--------KDGSLSVAVDLSL 171

Query: 345 QF---GQYACKAANKYGSAQK 362
                    C   N    A  
Sbjct: 172 PKPWHLPVTCVGKNDKEEAHG 192

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  108 bits (270), Expect = 7e-28
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 18/198 (9%)

Query: 88  QTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS-------RFQLT 136
           +TA L C             + W+   +  ++    I +     I+D+       R   T
Sbjct: 16  ETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT 75

Query: 137 TDPETST-YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIV 195
           ++   S    +++  +Q +D G Y+C+V  +     + +  L V   P  +         
Sbjct: 76  SNDVKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKFLLTVLVKPSGTRCFV-DGSE 133

Query: 196 SEGQTVYLYCYA-NGFPAPTISWRRDNSAAL--STGGSIYRGNILKIPNITKTDRGTYYC 252
             G    L C    G       W++ + +    +   +     ++ + N +    GTY C
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSC 193

Query: 253 VAQNGVGRGMKRNIAVEV 270
             QN VG   +  + ++V
Sbjct: 194 TVQNRVG-SDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 90.9 bits (225), Expect = 2e-21
 Identities = 41/223 (18%), Positives = 65/223 (29%), Gaps = 48/223 (21%)

Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT----ISWRRDNSAA-------- 224
           L +  P        + +  ++G+T YL C     P       I W    S          
Sbjct: 1   LSITTPE-------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53

Query: 225 LSTGGSIYRGNI--------------------LKIPNITKTDRGTYYCVAQNGVGRGMKR 264
           L +G  IY                        + + N+  +D GTY C  +   G    +
Sbjct: 54  LYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NK 112

Query: 265 NIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVS 323
              + V   P  T       + +  D  L+C  +    P    W K          +   
Sbjct: 113 KFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA- 171

Query: 324 HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                 E +   + V        G Y+C   N+ GS Q  + L
Sbjct: 172 ------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 26/114 (22%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P+ +    +  ++I     LKC  +         W K+               S  +   
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS-------------DSQTMPTP 168

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRP 182
                T P     ++S+K      +G Y C V     N+V      + L V  P
Sbjct: 169 WLAEMTSP-----VISVKNASSEYSGTYSCTV----QNRVGSDQCMLRLDVVPP 213

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  108 bits (271), Expect = 1e-27
 Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 55/303 (18%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
            T   +   ++ ++     + CS+       +  V     D  +++ P     + S    
Sbjct: 4   ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD--QRLNPTVTYGNDSF--- 58

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
                      ++   +S+    E       C VI+  N        + +   P  +   
Sbjct: 59  -----------SAKASVSVTAEDE-GTQRLTCAVILG-NQSQETLQTVTIYSFPAPN-VI 104

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRG- 248
                VSEG  V + C A+  P   ++     +  L             +   T  D G 
Sbjct: 105 LTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLG-------PRAQLLLKATPEDNGR 155

Query: 249 TYYCVAQNGV-GRGMKRN--IAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPP 303
           ++ C A   V G+ + +N    + V + P +                    C     P P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 215

Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
            +  +KDG   +                       +T+ R   G Y C+A +  G   +E
Sbjct: 216 ELKCLKDGTFPLP------------------IGESVTVTRDLEGTYLCRARSTQGEVTRE 257

Query: 364 IEL 366
           + +
Sbjct: 258 VTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 96.3 bits (239), Expect = 5e-23
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 14/139 (10%)

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNST-RSV 193
            P      L +K   E +   + C   + +  ++   +   EL V   P + +     + 
Sbjct: 136 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 195

Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
              E       C A G P P +   +D +  L  G         +   +T+   GTY C 
Sbjct: 196 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCR 246

Query: 254 AQNGVGRGMKRNIAVEVEF 272
           A++  G   +  + V V  
Sbjct: 247 ARSTQGEVTR-EVTVNVLS 264

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  106 bits (267), Expect = 2e-27
 Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 24/190 (12%)

Query: 192 SVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGS----IYRGNILKIPNITKT 245
            V V EG+ + L C          +  W  +      T             L I N+  +
Sbjct: 17  EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76

Query: 246 DRGTYYCVAQNGVGRGMK---------RNIAVEVEFAPVITINRPRQGQALQYDAILECH 296
           D+G Y C   +                        +   I +        +  +  LEC 
Sbjct: 77  DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF 136

Query: 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
               P P I W K    + +    S          S   L++  I+    G Y C+A N 
Sbjct: 137 ALGNPVPDIRWRKVLEPMPSTAEIST---------SGAVLKIFNIQLEDEGIYECEAENI 187

Query: 357 YGSAQKEIEL 366
            G  + +  +
Sbjct: 188 RGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  101 bits (254), Expect = 1e-25
 Identities = 43/182 (23%), Positives = 61/182 (33%), Gaps = 24/182 (13%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +   L C   Y     + +  +       P+ I+M     +  +              L 
Sbjct: 24  KGMVLLCDPPYHFPDDLSYRWL---LNEFPVFITMDKRRFVSQT-----------NGNLY 69

Query: 148 IKEIQETDAGIYKC---------EVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEG 198
           I  ++ +D G Y C          V       +          P  I     + V    G
Sbjct: 70  IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV-VQFKDVYALMG 128

Query: 199 QTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
           Q V L C+A G P P I WR+      ST      G +LKI NI   D G Y C A+N  
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIR 188

Query: 259 GR 260
           G+
Sbjct: 189 GK 190

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 290 DAILECHVEAYPPPAIV--WIKDGVQIM--NNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
             +L C    + P  +   W+ +   +    ++   VS        ++ +L +  +E   
Sbjct: 25  GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ-------TNGNLYIANVEASD 77

Query: 346 FGQYACKAANKYGSAQKEIELF 367
            G Y+C  ++   +     +  
Sbjct: 78  KGNYSCFVSSPSITKSVFSKFI 99

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  106 bits (265), Expect = 2e-27
 Identities = 33/178 (18%), Positives = 51/178 (28%), Gaps = 12/178 (6%)

Query: 194 IVSEGQTVYLYCYANGFPAPTIS--WRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYY 251
           +   G  + L C  N          W +              G   +    +    G Y 
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDSDDQWGEYS 65

Query: 252 CVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA-IVWIKD 310
           CV              +++   P +   +  +       A+L C  E+ PP     W K 
Sbjct: 66  CVFLPEPM----GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121

Query: 311 GVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQKEIEL 366
                    + S S F  S     + L +  +      GQY C   +  GS Q  I L
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 84.7 bits (209), Expect = 1e-19
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 44/193 (22%)

Query: 82  QIKDIAQTADLKCSVQYADDYPVI---WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD 138
            ++D+     L CS+       V    W+K               G ++  D+       
Sbjct: 8   TVEDLGSKILLTCSLN-DSATEVTGHRWLK--------------GGVVLKEDA------- 45

Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEG 198
                     K   +   G Y C        +      + +  PP +      S  ++EG
Sbjct: 46  --LPGQKTEFKVDSDDQWGEYSCVF----LPEPMGTANIQLHGPPRVKAVK-SSEHINEG 98

Query: 199 QTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYRG----------NILKIPNIT-KTD 246
           +T  L C +   P     +W +   +      +              + L I N+  + D
Sbjct: 99  ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158

Query: 247 RGTYYCVAQNGVG 259
            G Y C   +  G
Sbjct: 159 PGQYRCNGTSSKG 171

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 25/116 (21%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISMSGSLII 128
           P +  +   +  +  +TA L C    ++  P      W K+  ++    +  S       
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCK---SESVPPVTDWAWYKITDSEDKALMNGS------- 133

Query: 129 HDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNKV---SAEVELIVR 180
            +SRF +++    S   L I+ +  E D G Y+C       +      A + L VR
Sbjct: 134 -ESRFFVSSSQGRSE--LHIENLNMEADPGQYRCNG----TSSKGSDQAIITLRVR 182

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  106 bits (265), Expect = 1e-25
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%)

Query: 142 STYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQT 200
           S    +   +   D G  +    + L N        + +   P  +   T+   VSEG  
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE-VSEGTE 300

Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV-G 259
           V + C A+     T++              +     L +    + +  ++ C A   V G
Sbjct: 301 VTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAG 352

Query: 260 RGMKRNIAVE--VEFAPVITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIM 315
           + + +N   E  V + P +                    C     P P +  +KDG   +
Sbjct: 353 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412

Query: 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                                  +T+ R   G Y C+A +  G   +E+ +
Sbjct: 413 ------------------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 445

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 89.2 bits (220), Expect = 1e-19
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 14/139 (10%)

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNST-RSV 193
            P      L +K   E +   + C   + +  ++   +   EL V   P + +     + 
Sbjct: 321 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 380

Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
              E       C A G P P +   +D +  L  G         +   +T+   GTY C 
Sbjct: 381 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCR 431

Query: 254 AQNGVGRGMKRNIAVEVEF 272
           A++  G   +  + V V  
Sbjct: 432 ARSTQGEVTR-EVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 85.3 bits (210), Expect = 2e-18
 Identities = 35/294 (11%), Positives = 67/294 (22%), Gaps = 45/294 (15%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            +  + CS        +            PLP            +  L        Y LS
Sbjct: 15  GSVLVTCSTSCDQPMLLGIET--------PLP-----------KKELLLPGNNRKVYELS 55

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
                  +     C      + + +A+  L V   P   + +        G+ + L C  
Sbjct: 56  ----NVQEDSQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110

Query: 208 -NGFPAP--TISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMK 263
             G P    T+   R                    +          + C  +  +     
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170

Query: 264 RNIAVEVEFAPVITINRPRQGQALQY--------DAILECHVEAYPPPA---IVWIKDGV 312
                      + T   P     L             + C ++   P +   +       
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230

Query: 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           ++     Y       +D FS  +   +T E     +  C       S +    +
Sbjct: 231 RLNPTVTYG------NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 71.4 bits (174), Expect = 1e-13
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK-TDR 247
           S   VI+  G +V + C  +      +         L     +  GN  K+  ++   + 
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPMLLGIE----TPLPKKELLLPGNNRKVYELSNVQED 60

Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPA-- 304
               C +    G+   +   + V + P  + +      Q +  +  L C VE   P A  
Sbjct: 61  SQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119

Query: 305 -IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQK 362
            +V ++   ++            T+          + + R   G  ++C+          
Sbjct: 120 TVVLLRGEKELKREPAVGEPAEVTT---------TVLVRRDHHGANFSCRTELDLRPQGL 170

Query: 363 EI 364
           E+
Sbjct: 171 EL 172

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  107 bits (266), Expect = 2e-25
 Identities = 38/313 (12%), Positives = 89/313 (28%), Gaps = 32/313 (10%)

Query: 80  QEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD 138
           +   +D+  +    C++     +      +  + +  + +  ++       + R  L   
Sbjct: 225 ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ 284

Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVS 196
            +  ++ + I  +++ DAG Y C        +  + ++              S   V   
Sbjct: 285 DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGV 344

Query: 197 EGQTVYLYCYANGFPAPTIS-WRRDNSAALSTGGSIYRGN-------------------- 235
            G +V + C  N   + +I  W     A       +                        
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404

Query: 236 --ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR--QGQALQYDA 291
              + +  +T  D G Y+C+            I +      +          G+ L+   
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPC 464

Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ---FGQ 348
              C   +Y      W   G Q + +Q    S    + + +   + + T+        G 
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL-TLNLVTRADEGW 523

Query: 349 YACKAANKYGSAQ 361
           Y C     +   +
Sbjct: 524 YWCGVKQGHFYGE 536

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  101 bits (253), Expect = 1e-23
 Identities = 41/324 (12%), Positives = 86/324 (26%), Gaps = 32/324 (9%)

Query: 68  SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI 127
              + P +   ++    D+ +T  + C  +  +      +          +  S      
Sbjct: 108 EVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP 167

Query: 128 IHDSRFQLTTD-PETSTYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPPII 185
            +  R +L         + + I +++ +DAG Y C+    S +NK +A+++++   P ++
Sbjct: 168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELV 227

Query: 186 SDNSTRSVIVSE------GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-------Y 232
            ++   SV                 C  +      +        A +  G I        
Sbjct: 228 YEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKD 287

Query: 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ---ALQY 289
               + I  + K D G Y C A +         I     F    +               
Sbjct: 288 GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS 347

Query: 290 DAILECHVEAYPPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV---------- 338
              + C        +I  W              V          +  L +          
Sbjct: 348 SVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407

Query: 339 ITIERRQF---GQYACKAANKYGS 359
           + + +      G Y C        
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLW 431

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 98.5 bits (244), Expect = 1e-22
 Identities = 50/327 (15%), Positives = 96/327 (29%), Gaps = 42/327 (12%)

Query: 88  QTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
            +  + C              W +         L  S       +  R  LT  PE  T+
Sbjct: 16  NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTF 75

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
           +++I ++ + D+G YKC + I+ +  +S +V L V + P + ++ T+   V  G+TV + 
Sbjct: 76  VVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTIN 133

Query: 205 CYANGFPAPTISW---------------------RRDNSAALSTGGSIYRGNILKIPNIT 243
           C      A                                 L   G+      + I  + 
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193

Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL----QYDA------IL 293
            +D G Y C A +       +  A      P   +       ++                
Sbjct: 194 LSDAGQYLCQAGDDSNS--NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251

Query: 294 ECHVEAYPPPAIVWIKDG-VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
            C   +     +V    G           ++       F   S+ +  + +   G+Y C 
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF---SVVITGLRKEDAGRYLCG 308

Query: 353 AANKYGSAQKEIELFDRETQTGDETFP 379
           A +     +       +     + T P
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEESTIP 335

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 80.8 bits (198), Expect = 1e-16
 Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 28/256 (10%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIW---MKMDTAKKMEPLPISMSGSLIIH 129
            TI             +  + C     +   + +    +     +   L  S       +
Sbjct: 332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391

Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
           + R  L  +P   T+ + + ++   DAG Y C        + + E+++I   P +     
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP-- 449

Query: 190 TRSVIVSEGQTVYLYCY----ANGFPAPTISWRRDNSAAL-STGGSIYRGNI-------- 236
             +V    G+T+ + C+     + +      W      AL S      +  +        
Sbjct: 450 -GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508

Query: 237 --LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN-------RPRQGQAL 287
             L +  +T+ D G Y+C  + G   G    + V VE                    + +
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKV 568

Query: 288 QYDAILECHVEAYPPP 303
                 E   +A   P
Sbjct: 569 LDSGFREIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.4 bits (158), Expect = 1e-11
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 36/210 (17%)

Query: 191 RSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNS-----AALSTGGSIYRGN------- 235
             V   EG +V + CY    +        W R  +       +S+ G +           
Sbjct: 8   EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67

Query: 236 --------ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
                   ++ I  +++ D G Y C       RG+  ++++EV   P +  +       L
Sbjct: 68  NFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126

Query: 288 QYDAILECHVEAYPPP--AIVWIKDGVQ-------IMNNQHYSVSHFATSDEFSDTSLRV 338
                + C  +         ++ + G+                        + +   L  
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186

Query: 339 ITIERRQF---GQYACKAANKYGSAQKEIE 365
           + I + +    GQY C+A +   S +K  +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  101 bits (252), Expect = 2e-25
 Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 31/200 (15%)

Query: 193 VIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKTD 246
            I S  + + LY +         ++W  + SA +     +     G    L+I   T  D
Sbjct: 12  KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPND 70

Query: 247 RGTYYCVAQNGVGR-------------------GMKRNIAVEVEFAPVITINRPRQGQAL 287
           +G Y     +G                         +  A+  +    +    P      
Sbjct: 71  KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 130

Query: 288 Q-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
           +     L C+V   PPP + W+K+   +    H ++      +        +  +     
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL----KFEAGRTAYFTINGVSTADS 186

Query: 347 GQYACKAANKYGSAQKEIEL 366
           G+Y     NKYGS   +  +
Sbjct: 187 GKYGLVVKNKYGSETSDFTV 206

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 96.9 bits (241), Expect = 8e-24
 Identities = 42/206 (20%), Positives = 64/206 (31%), Gaps = 47/206 (22%)

Query: 82  QIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPE 140
           +I+  A+   L   V Y  +   V W                +GS I +  R +     E
Sbjct: 12  KIQSTAEGIQLYSFVTYYVEDLKVNWSH--------------NGSAIRYSDRVKTGVTGE 57

Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR-------------------- 180
                L I E    D G Y  E+           V+L  +                    
Sbjct: 58  QIW--LQINEPTPNDKGKYVMELF-DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114

Query: 181 -RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY------R 233
            R  ++       V + EG+ + L C   G P P +SW ++   AL+            R
Sbjct: 115 NRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK-ALAQTDHCNLKFEAGR 172

Query: 234 GNILKIPNITKTDRGTYYCVAQNGVG 259
                I  ++  D G Y  V +N  G
Sbjct: 173 TAYFTINGVSTADSGKYGLVVKNKYG 198

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 6/91 (6%)

Query: 290 DAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
              L   V  Y     + W  +G  I  +                  L++        G+
Sbjct: 19  GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV-----TGEQIWLQINEPTPNDKGK 73

Query: 349 YACKAANKYGSAQKEIELFDRETQTGDETFP 379
           Y  +  +     QK ++L  +        F 
Sbjct: 74  YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 104

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score =  101 bits (251), Expect = 1e-24
 Identities = 43/251 (17%), Positives = 84/251 (33%), Gaps = 44/251 (17%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGS 125
           SQ  P ++  S +    + ++  + C VQ  ++     V W+            +    +
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 126 LIIHDSRFQ----LTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR 181
           L +   RFQ    L  D   +   L ++++Q+ D GIY CE+ +  N  +  +  + +  
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK-NESMVMKKPVELWV 120

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP---TISWRRDN----------------- 221
            P       R + V  G T  + C            ++W   +                 
Sbjct: 121 LP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176

Query: 222 ----------SAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
                        +   G I R +  +K+  + ++D+G Y C    G     ++ I + V
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHV 235

Query: 271 EFAPVITINRP 281
                     P
Sbjct: 236 VQDEFQRTISP 246

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 76.8 bits (188), Expect = 4e-16
 Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 53/227 (23%)

Query: 189 STRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAA--------LSTGGSIYRGNI- 236
           S+  + V  G++V + C            + W                 +  S+  G   
Sbjct: 11  SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQ 70

Query: 237 ---------------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281
                          L + ++ K D G Y C  +            VE+    V+     
Sbjct: 71  NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM-VMKKPVELW---VLPEEPR 126

Query: 282 RQGQALQYDAILECHVEAYPPP---AIVWIKDGVQ-------IMNNQHYSVSHFATSDEF 331
                +     + C +++        + W+            +  + +     F +   F
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186

Query: 332 SDTSLRVITIERRQF------------GQYACKAANKYGSAQKEIEL 366
            +       I R               G Y C        ++K I L
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 95.6 bits (238), Expect = 1e-24
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNI 236
              +P +++    RS  V  G  V   C A +  PA T+ W R ++  L +    + G I
Sbjct: 5   APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-I 63

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEV 270
           L I N+  +D GTY C   N          + V+V
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 274 PVITINRPRQGQALQ-YDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
            ++T+   R        D    C  ++  P   +VW +     + ++             
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------D 59

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +  L +  ++    G Y C  +N +   Q    L
Sbjct: 60  FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 29/118 (24%)

Query: 68  SSQRTPTISYISQEQIKDIA--QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSG 124
           ++   P +  + +++ + +         C+ +       + W ++        LP     
Sbjct: 4   AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG----KLP----- 54

Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVR 180
                 SR            IL+I+ +Q +DAG Y C      N          L V+
Sbjct: 55  ------SRAMDFNG------ILTIRNVQPSDAGTYVCTGS---NMFAMDQGTATLHVQ 97

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 99.0 bits (246), Expect = 2e-24
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 9/192 (4%)

Query: 88  QTADLKCSVQYADDYPVIWMK---MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
               L             W K       K++     + + +        +       S  
Sbjct: 15  NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS-- 72

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
            L  + I   D G+Y  ++      +  A V   V +P         +  V E  +V L 
Sbjct: 73  -LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLT 131

Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGM 262
           C +N      I W  ++ +   T         +IL+I  I + D G Y C   N V    
Sbjct: 132 CLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190

Query: 263 KRNIAVEVEFAP 274
             +I +++ F P
Sbjct: 191 SNSIKLDIIFDP 202

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 89.0 bits (220), Expect = 6e-21
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 29/188 (15%)

Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSA--------------------ALSTGGSIYRG 234
           V+E   V L  +         +W + N+                     A S    IY  
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AIL 293
             L    IT  D G Y     +   R  +  +   V         +       + D   L
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
            C         I W+ +   +   +  ++S        +++ LR+  I+R   G+Y C+ 
Sbjct: 131 TCLSND-IGANIQWLFNSQSLQLTERMTLSQ-------NNSILRIDPIKREDAGEYQCEI 182

Query: 354 ANKYGSAQ 361
           +N     +
Sbjct: 183 SNPVSVRR 190

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 95.7 bits (237), Expect = 6e-23
 Identities = 34/235 (14%), Positives = 62/235 (26%), Gaps = 48/235 (20%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPL-----PISMSG 124
            T+     E       T +L CS Q A+D     + W+K  +  +   +          G
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 125 SLIIHDSRFQLT--------TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVE 176
              +    ++ +        +    +   L +  +   D G Y C+V             
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 177 LIVRR-------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
             V            +  ++   V V EG  + + C         ++W    +   +   
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182

Query: 230 SIYR-------------------------GNILKIPNITKTDRGTYYCVAQNGVG 259
             Y+                            L I     TD G  +C    G G
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG 237

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 85.0 bits (209), Expect = 4e-19
 Identities = 37/236 (15%), Positives = 58/236 (24%), Gaps = 60/236 (25%)

Query: 191 RSVIVSEGQTVYLYC---YANGFPAPTISWRRDNSA-----------ALSTGGSIYR--- 233
             V V  G TV L C    AN    P ISW +  S                 G  +    
Sbjct: 10  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69

Query: 234 -------------------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-- 272
                                 L++ ++   D G Y+C       R      A  V    
Sbjct: 70  SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 273 -----APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326
                +  + ++     Q  +  D  + C         + W        N +  +    A
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189

Query: 327 TSDEFSDTSLRVITIERRQF----------------GQYACKAANKYGSAQKEIEL 366
             ++F  T        R  F                G+  C+ A   G    +   
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
           E +   L+I   +  D+G YKC+         S  V L V    ++   S  + +V EGQ
Sbjct: 47  EETNSSLNIVNAKFEDSGEYKCQHQ---QVNESEPVYLEVFSDWLLLQAS--AEVVMEGQ 101

Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
            ++L C+    +    + + +D  A        Y  + + I N T  D GTYYC  +   
Sbjct: 102 PLFLRCHGWRNWDVYKVIYYKDGEAL----KYWYENHNISITNATVEDSGTYYCTGKVWQ 157

Query: 259 GRGMKRNIAVEVEFAP 274
                  + + V  AP
Sbjct: 158 LDYESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 28/186 (15%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNIL 237
           V + P +S N      + +G+ V L C  N F    +  W  + S +  T  S      L
Sbjct: 1   VPQKPKVSLNP-PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------L 53

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECH 296
            I N    D G Y C  Q         +  V +E      + +      ++     L CH
Sbjct: 54  NIVNAKFEDSGEYKCQHQQVN-----ESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108

Query: 297 VEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
               +    +++ KDG  +                  + ++ +        G Y C    
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWY-------------ENHNISITNATVEDSGTYYCTGKV 155

Query: 356 KYGSAQ 361
                +
Sbjct: 156 WQLDYE 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
                + +SI      D+G Y C   +   +  S  + + V + P
Sbjct: 129 YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 274 PVITINRPRQGQALQYDAI-LECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEF 331
           P +++N P   +  + + + L C+   +   +   W  +G                  E 
Sbjct: 5   PKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS---------------EE 48

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
           +++SL ++  +    G+Y C+      S    +E+F
Sbjct: 49  TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 92.2 bits (229), Expect = 2e-22
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
            T T      +    D+G Y C+        +S  V L V    ++    T  +   EG+
Sbjct: 47  PTHTQPSYRFKANNNDSGEYTCQTG---QTSLSDPVHLTVLFEWLVL--QTPHLEFQEGE 101

Query: 200 TVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
           T+ L C++    P   +++ ++  +        +      IP    +  G Y+C    G 
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKS----QKFSHLDPTFSIPQANHSHSGDYHCTGNIGY 157

Query: 259 GRGMKRNIAVEV 270
                + + + V
Sbjct: 158 TLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 86.8 bits (215), Expect = 1e-20
 Identities = 24/184 (13%), Positives = 47/184 (25%), Gaps = 32/184 (17%)

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPN 241
            ++       + V +  +V L C     P   +I W  + +   +               
Sbjct: 5   AVLKLEP-PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------SYRFK 57

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ---GQALQYDAILECHVE 298
               D G Y C             + + V F  ++      +   G+      +L CH  
Sbjct: 58  ANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLEFQEGE----TIMLRCHSW 110

Query: 299 A-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
              P   + + ++G     +               D +  +        G Y C     Y
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSH-------------LDPTFSIPQANHSHSGDYHCTGNIGY 157

Query: 358 GSAQ 361
               
Sbjct: 158 TLFS 161

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 93.0 bits (231), Expect = 2e-22
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
            +      I      D+G Y+C+      + +S  V+L V    ++        +  E  
Sbjct: 50  SSQASSYFIDAATVDDSGEYRCQTQ---LSTLSDPVQLEVHIGWLLL--QAPRWVFKEED 104

Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
            ++L C++        +++ ++           +  +   IP  T  D G+Y+C    G 
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGR----KYFHHNSDFYIPKATLKDSGSYFCRGLVGS 160

Query: 259 GRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
                  + + +     ++          Q
Sbjct: 161 KNVSSETVQITITQGLAVSTISSFFPPGYQ 190

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 32/182 (17%)

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPN 241
            ++         V E  +V L C     P   +  W  + S   S   S        I  
Sbjct: 8   AVVFLEPQWYR-VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------YFIDA 60

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVE 298
            T  D G Y C  Q      +   + +EV    ++        ++   +     L CH  
Sbjct: 61  ATVDDSGEYRCQTQLST---LSDPVQLEVHIGWLLLQAPRWVFKEEDPIH----LRCHSW 113

Query: 299 AYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
                  + ++++G                     ++   +     +  G Y C+     
Sbjct: 114 KNTALHKVTYLQNGKGRKYFH-------------HNSDFYIPKATLKDSGSYFCRGLVGS 160

Query: 358 GS 359
            +
Sbjct: 161 KN 162

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 92.4 bits (229), Expect = 3e-22
 Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 26/189 (13%)

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-------------LKI 239
             V  G +V L C  +      +   R +   +    S+                    I
Sbjct: 12  YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71

Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAI-LECHVE 298
           P++   D G Y C+   G     K    + V+          R  +      + L C   
Sbjct: 72  PSVQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGTGEVQLTCQAR 128

Query: 299 AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITIERRQFGQYACKAANKY 357
            YP   + W    V        + SH  T +  +  TS  V+ ++ +    ++C   N +
Sbjct: 129 GYPLAEVSWQNVSVPA------NTSHIRTPEGLYQVTS--VLRLKPQPSRNFSCMFWNAH 180

Query: 358 GSAQKEIEL 366
                   +
Sbjct: 181 MKELTSAII 189

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 91.5 bits (227), Expect = 4e-22
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
            +      I      D+G Y+C+      + +S  V+L V    ++        +  E  
Sbjct: 50  SSQASSYFIDAATVNDSGEYRCQTN---LSTLSDPVQLEVHIGWLLL--QAPRWVFKEED 104

Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
            ++L C++        +++ ++           +  +   IP  T  D G+Y+C    G 
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDR----KYFHHNSDFHIPKATLKDSGSYFCRGLVGS 160

Query: 259 GRGMKRNIAVEV 270
                  + + +
Sbjct: 161 KNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 79.9 bits (197), Expect = 5e-18
 Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 32/187 (17%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIP 240
             ++         V E  +V L C     P   +  W  + S   S   S        I 
Sbjct: 7   KAVVFLEPQWYS-VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS------YFID 59

Query: 241 NITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHV 297
             T  D G Y C             + +EV    ++        ++   +     L CH 
Sbjct: 60  AATVNDSGEYRCQTNLSTLS---DPVQLEVHIGWLLLQAPRWVFKEEDPIH----LRCHS 112

Query: 298 EA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
                   + ++++G                     ++   +     +  G Y C+    
Sbjct: 113 WKNTALHKVTYLQNGKDRKYFH-------------HNSDFHIPKATLKDSGSYFCRGLVG 159

Query: 357 YGSAQKE 363
             +   E
Sbjct: 160 SKNVSSE 166

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 91.8 bits (227), Expect = 6e-22
 Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 6/174 (3%)

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGNILKIPNITKTDRGTY 250
             +   G +V L C   G  +P  SWR    + L+    +    + L +  ++  +  +Y
Sbjct: 10  RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA---IVW 307
            C A     + +++ I VE+   P                  ++C V    P     I  
Sbjct: 70  LCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128

Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
           +K    +M +Q +       S E     +    +         C+A        
Sbjct: 129 LKGD-HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 19/155 (12%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
           E +T  L++  +   +   Y C      + K+   +++ +   P   +    S  +  G+
Sbjct: 50  EGTTSTLTMNPVSFGNEHSYLC-TATCESRKLEKGIQVEIYSFPKDPE-IHLSGPLEAGK 107

Query: 200 TVYLYCYANG---FPAPTISWRRDN-------SAALSTGGSIYRGNILKIPNITKTDRG- 248
            + + C       F    I   + +           +   S+   ++         D G 
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167

Query: 249 TYYCVAQNGVG------RGMKRNIAVEVEFAPVIT 277
              C A+  +          +    ++V  +P  T
Sbjct: 168 VLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 91.5 bits (227), Expect = 7e-22
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 38/206 (18%)

Query: 191 RSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSA---------ALSTGGSIYRGNILKIP 240
            +V + E   V  +  A        +++  +             +     I     + + 
Sbjct: 10  LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE---MFME 66

Query: 241 NITKTDRGTYYCVAQNGVGRGM-----------KRNIAVEVEFAPVITINRPRQGQALQ- 288
            +   D GTY    Q+G                K     E +    I    P   + L  
Sbjct: 67  KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 126

Query: 289 -----YDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
                 + +L+C V        IVW KD  +I  ++ +              +L +    
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTLLITEFS 179

Query: 343 RRQFGQYACKAANKYGSAQKEIELFD 368
           ++  G Y     +  G  +  ++L D
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 85.0 bits (210), Expect = 2e-19
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 25/159 (15%)

Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV-------------IISLNNK 170
              I    ++++  D  T    + ++++Q+ D G Y  ++             +  +  K
Sbjct: 41  EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100

Query: 171 VSAEVEL-----IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA 224
           +  E E      I ++ P   +    S  V+    V L C        T I W +D    
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVE--YLSWEVTGECNVLLKCKVANIKKETHIVWYKDE-RE 157

Query: 225 LSTGGSIYRGN---ILKIPNITKTDRGTYYCVAQNGVGR 260
           +S        +    L I   +K D G Y  + ++  G+
Sbjct: 158 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 196

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 88.4 bits (219), Expect = 6e-21
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 23/176 (13%)

Query: 88  QTADLKCS-VQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
           Q  +L     Q +DD   I W K    KK+                 ++L  +       
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKE--KETFKEKDTYKLFKN-----GT 67

Query: 146 LSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
           L IK ++  D  IYK  +  +   N +    +L ++         ++  I        L 
Sbjct: 68  LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV------SKPKISWTCINTTLT 121

Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
           C       P ++  +D    L     +           T +    + C A N V +
Sbjct: 122 CEVMNGTDPELNLYQDGK-HLKLSQRVI------THKWTTSLSAKFKCTAGNKVSK 170

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 43/200 (21%)

Query: 186 SDNSTRSVIVSEGQTVYLYC--YANGFPAPTISWRRDNS----AALSTGGSIYRGN---- 235
              +      + GQ + L    +        I W + +     A        ++      
Sbjct: 2   EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61

Query: 236 -----ILKIPNITKTDRGTYYCVAQNGVGRGMKR---NIAVEVEFA-PVITINRPRQGQA 286
                 LKI ++   D+  Y     +  G+ +     ++ ++   + P I+         
Sbjct: 62  LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWT------- 114

Query: 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
              +  L C V     P +   +DG  +  +Q      + TS                  
Sbjct: 115 -CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLS---------------- 157

Query: 347 GQYACKAANKYGSAQKEIEL 366
            ++ C A NK         +
Sbjct: 158 AKFKCTAGNKVSKESSVEPV 177

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 89.5 bits (221), Expect = 7e-21
 Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 26/205 (12%)

Query: 88  QTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGS----LIIHDSRFQLTTDPETS 142
           ++  L C+     D Y + W   D +     L  +        + +HD+R +       S
Sbjct: 16  KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS 75

Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP---IISDNSTRSVIVSEGQ 199
              L + E Q  D   Y C V         A   L V   P    +S N     ++ +  
Sbjct: 76  QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135

Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNI-----------------LKIPN 241
                C + NG PAP I+W R+             G +                 L +  
Sbjct: 136 QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNI 266
                  +++C A   +  G    +
Sbjct: 196 RKDDRDASFHCAAHYSLPEGRHGRL 220

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 67.9 bits (165), Expect = 3e-13
 Identities = 36/245 (14%), Positives = 65/245 (26%), Gaps = 52/245 (21%)

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISW----------------- 217
           E+ +  PP         V V  G++V L C   G      + W                 
Sbjct: 1   EVRLSVPP--------LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEM 52

Query: 218 -------RRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
                     ++   S    +     L +      D   Y CV + G     +    + V
Sbjct: 53  QGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112

Query: 271 EFAP---VITINRPRQGQAL-QYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHF 325
              P    ++ N+            I  C+     P P I W ++G ++      +   +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172

Query: 326 ATSDE-------FSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIELFDRETQTGDET 377
            TS          S TS   + + +      + C A       +           +    
Sbjct: 173 MTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGR------HGRLDSPTFH 226

Query: 378 FPIFY 382
             + Y
Sbjct: 227 LTLHY 231

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 87.4 bits (216), Expect = 3e-20
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 26/208 (12%)

Query: 88  QTADLKCSVQYADDYP-----VIWMKMDTA-----KKMEPLPISMSGSLIIHDSRFQLTT 137
               ++C              V W   D          E L +  S     +  R +L  
Sbjct: 17  SNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS----YRQRARLLK 72

Query: 138 DPETS-TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
           D  +     L I +++  DAG+Y+C  +IS        + + V  P    +     V+  
Sbjct: 73  DQLSLGNAALQITDVKLQDAGVYRC--MISYGGADYKRITVKVNAPYNKINQRI-LVVDP 129

Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG-------NILKIPNITKTDRGT 249
                 L C A G+P   + W   +   LS   +           N+     I  T    
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189

Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
           +YC  +            + +   P+  
Sbjct: 190 FYCTFRRLDP-EENHTAELVIPELPLAH 216

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 34/203 (16%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 192 SVIVSEGQTVYLYCYANGFPAP-----TISWRRDNSAALS-------------------- 226
             +V  G  + + C              + W  ++   +                     
Sbjct: 10  LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR 69

Query: 227 -TGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG 284
                +  GN  L+I ++   D G Y C+   G G   KR I V+V         R    
Sbjct: 70  LLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKR-ITVKVNAPYNKINQRILVV 127

Query: 285 QALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
             +  +  L C  E YP   ++W     Q+++ +  + +       F+ TS   + I   
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS--TLRINTT 185

Query: 345 QFGQYACKAANKYGSAQKEIELF 367
               + C             EL 
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELV 208

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 82.6 bits (204), Expect = 2e-19
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTG 228
              +   L V  PPIIS  ST++     G+   + C+    P P  I+W    +   S  
Sbjct: 2   SSGSSGTLTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59

Query: 229 GSIYRG----------NILKIPNITKTDRGTYY-CVAQNGVGRGMKRNIAVEVEFAPV 275
              Y            + L I NI + D  T Y C A N  G      I ++ + + +
Sbjct: 60  SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSEM 116

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 68.0 bits (166), Expect = 3e-14
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 263 KRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIM--N 316
             +  + V   P+I+  +      G+       ++C + + PPP  I W      +    
Sbjct: 4   GSSGTLTVNGPPIISSTQTQHALHGE----KGQIKCFIRSTPPPDRIAWSWKENVLESGT 59

Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIEL 366
           +  Y+V   +T +    ++L +  I R  F   Y C A N +GS  + I L
Sbjct: 60  SGRYTVETISTEEGVI-STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 83.1 bits (205), Expect = 7e-19
 Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 88  QTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           ++  L            + W+  +T+        + S  + + + +     +  T +Y L
Sbjct: 14  ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF-TQSYSL 72

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
            +  ++  D G Y+ ++    + K+S+    I+R+   I   +   +  +    ++L C 
Sbjct: 73  QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132

Query: 207 A-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDR-GTYYCVAQNGVGR 260
             +     +  W          G ++     L +    +      Y C+A+N V  
Sbjct: 133 VEDADDNVSFRWEAL-------GNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSN 181

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 37/200 (18%)

Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAAL-------------------STG 228
           +   V    G++V L   +  G     I+W  + ++                        
Sbjct: 4   TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63

Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
            +  +   L++ N+   D G+Y           +       +     I +    Q     
Sbjct: 64  LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123

Query: 289 YDAI-LECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
              + L C VE A    +  W   G  + +  + +VS                       
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS---------------SE 168

Query: 347 GQYACKAANKYGSAQKEIEL 366
             Y C A N   +    +  
Sbjct: 169 QDYTCIAENAVSNLSFSVSA 188

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 80.6 bits (199), Expect = 8e-19
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238
              PP I +     +IVS+G+   L C A G P PTI W +     + T     R + + 
Sbjct: 6   EDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGE-RVETDKDDPRSHRML 63

Query: 239 IPN------------ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
           +P+             ++ D G Y CVA+N +G  +  + ++EV  A     
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 269 EVEFAPVITINRP-----RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVS 323
           + +F P I    P      +G+     A L C  E  P P I W K G ++  ++    S
Sbjct: 5   QEDFPPRIVE-HPSDLIVSKGE----PATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS 59

Query: 324 HFATSDEFSDTSLRVITIERRQF-----GQYACKAANKYGSA 360
           H          SL  + I   +      G Y C A N  G A
Sbjct: 60  HRML---LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 27/124 (21%), Positives = 35/124 (28%), Gaps = 19/124 (15%)

Query: 65  SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPIS 121
           SL      P I     + I    + A L C    A+  P   + W K           + 
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYKGGE-------RVE 51

Query: 122 MSGSLIIHDSRFQLTTDPETSTYILSIKEI--QETDAGIYKCEVIISLNNKVSAEVELIV 179
                   D R      P  S + L I        D G+Y C     L   VS +  L V
Sbjct: 52  TDKD----DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

Query: 180 RRPP 183
               
Sbjct: 108 AAAA 111

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 82.6 bits (203), Expect = 1e-18
 Identities = 32/207 (15%), Positives = 51/207 (24%), Gaps = 42/207 (20%)

Query: 184 IISDNSTRSVIVS-EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
            I  N    V    E  +V L C      A  I+W +D                  + + 
Sbjct: 3   SIKGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE---DKKKWNLGSN 56

Query: 243 TKTDRGTYYCVAQNGVGRGMK-----------RNIAVEVEFAPVITINRPRQGQALQYD- 290
            K  RG Y C       + ++           +  A + + A      +       +   
Sbjct: 57  AKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGG 116

Query: 291 --------------AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
                          IL C    YP   I+W  +   I  ++              +  L
Sbjct: 117 ITQTPYKVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNI------GSDEDHL 168

Query: 337 RVITI-ERRQFGQYACKAANKYGSAQK 362
            +    E  Q G Y C           
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.2 bits (137), Expect = 7e-10
 Identities = 17/149 (11%), Positives = 36/149 (24%), Gaps = 31/149 (20%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----------SAEVELIVRRPPIISDN 188
                  ++    +   G+Y+C+   + +  +           + +              
Sbjct: 45  TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAK 104

Query: 189 STRSVIVSE--------------GQTVYLYCYANGFPAPTISWRRDN---SAALSTGGSI 231
              S    E              G TV L C     P   I W+ ++             
Sbjct: 105 KDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIG 162

Query: 232 YRGNILKIPNITKT-DRGTYYCVAQNGVG 259
              + L +   ++    G Y C  +    
Sbjct: 163 SDEDHLSLKEFSELEQSGYYVCYPRGSKP 191

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 81.8 bits (201), Expect = 3e-18
 Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 13/197 (6%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAALSTGGSIYRGNI---L 237
             +   +    +  ++ +TV + C  +      +S   R         G+    +     
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV--ITINRPRQGQALQYDAI-LE 294
            IP+   +  G  +C A+            V V    +  + ++     +    + + L 
Sbjct: 67  TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126

Query: 295 CHVEAYP--PPAIVWIKDGVQIMNN---QHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           C             W     +  +         +   +  +   ++L +  + R   G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186

Query: 350 ACKAANKYGSAQKEIEL 366
            C A++   + +    +
Sbjct: 187 TCAASSGLMTKKNSTFV 203

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 80.6 bits (198), Expect = 7e-18
 Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +T  + C    ++   V         +         G+ I  DS+   T           
Sbjct: 25  KTVVIPCLGSISN-LNVSLCA-----RYPEKRFVPDGNRISWDSKKGFT----------- 67

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI--ISDNSTRSVIVSEGQTVYLYC 205
           I     + AG+  CE  I+  +  S    ++V    I  +  + +  + +S G+ + L C
Sbjct: 68  IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 127

Query: 206 YANGFP--APTISWRRDNSAALSTGGSIYR------------GNILKIPNITKTDRGTYY 251
            A          +W   +S                        + L I  +T++D+G Y 
Sbjct: 128 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 187

Query: 252 CVAQNGVGRGMKRNIAVEVEFAPVI 276
           C A +G+    K +  V V   P+ 
Sbjct: 188 CAASSGLMT-KKNSTFVRVHEDPIE 211

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 77.9 bits (192), Expect = 5e-18
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 270 VEFAPVIT-INRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS 328
           V FAP IT +  P           +   V+  P PA+ W  +G  +  +++       T+
Sbjct: 1   VHFAPTITFLESPTSDH----HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                  L++        G Y   A N+YG  +K+I  
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA---------ALSTGG 229
           V   P I+   +     +      +     G P P + W  + +           +    
Sbjct: 1   VHFAPTITFLES----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
                  L++ N T  + G Y  +A+N  G+  ++ I+      P I
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 27/119 (22%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
           PTI+++ +    D      +  +V+     P   + W                +G+++  
Sbjct: 5   PTITFL-ESPTSD--HHWCIPFTVK---GNPKPALQWFY--------------NGAILNE 44

Query: 130 DSRFQLTTDPETSTY---ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
                        T     L +      + G Y          K   ++       P I
Sbjct: 45  SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEY-GKDEKQISAHFMGWPGI 102

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 78.3 bits (193), Expect = 5e-18
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKI 239
           PP+I      +  V+   T  L C A G P PTI WR+D     +           +L+I
Sbjct: 8   PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66

Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
                 D G Y C+A    G     +  +EV+   V   
Sbjct: 67  RYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVPVQ 104

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEF 331
            PVI      Q  A+    +L C     P P I+W KDGV +   +              
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ--------L 59

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +  L++   +    G+Y C A+   G A     +
Sbjct: 60  ENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 21/115 (18%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P I      Q   +  T  L C        P I W K                 +   DS
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVL-------------VSTQDS 54

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
           R +     E     L I+  +  D G Y C +  + + + +    + V+   +  
Sbjct: 55  RIKQL---ENGV--LQIRYAKLGDTGRYTC-IASTPSGEATWSAYIEVQEFGVPV 103

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 77.0 bits (190), Expect = 8e-18
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKI 239
           PPII      +  ++   T  L C A G P P ISW ++           +I     L+I
Sbjct: 8   PPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66

Query: 240 PNITKTDRGTYYCVAQNGVG 259
            N+  +D GTY CVA +  G
Sbjct: 67  KNLRISDTGTYTCVATSSSG 86

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEF 331
            P+I      Q  A+   A+L+C     P P I W+K+G      +   ++         
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--------Q 59

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              +L++  +     G Y C A +  G       L
Sbjct: 60  EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 21/108 (19%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P I      Q   +  TA LKC     D  PVI W+K                +    D 
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKAT-GDPLPVISWLKEG-------------FTFPGRDP 54

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           R  +    E  T  L IK ++ +D G Y C V  S + + S    L V
Sbjct: 55  RATIQ---EQGT--LQIKNLRISDTGTYTC-VATSSSGETSWSAVLDV 96

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
            S  +  G T+ L C A G P P   W ++    L+         +  +P +    +GTY
Sbjct: 11  TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL-PLTHETK----KLYMVPYVDLEHQGTY 65

Query: 251 YCVAQNGVGRGMKRNIAVEVE 271
           +C   N       + + + ++
Sbjct: 66  WCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 18/74 (24%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
             +L+C     P P   W K+ + +     + Y V +     +                G
Sbjct: 20  TLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQ----------------G 63

Query: 348 QYACKAANKYGSAQ 361
            Y C   N   S  
Sbjct: 64  TYWCHVYNDRDSQD 77

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 174 EVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR 233
           ++ ++ R  P I+ N   +   S G+++ + C A+G P P I W +DN   +   G + +
Sbjct: 2   QLTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60

Query: 234 GNI--LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
                L I  + K D G Y C A + +G   K      +E A   T
Sbjct: 61  DGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 264 RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVS 323
           R + V    AP IT N   Q  ++     + C     PPP I+W KD   ++ +    + 
Sbjct: 1   RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60

Query: 324 HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                    + +L +  + +   G Y C+A +  G A+ E   
Sbjct: 61  D-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 25/121 (20%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
           +  PTI+   + Q   I ++ ++ C+    +  P I W K                  ++
Sbjct: 8   RVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFK--------------DNETLV 52

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIIS 186
            DS   L          L+I+ +++ D G+Y C+     +       E   I+      +
Sbjct: 53  EDSGIVLKDGNRN----LTIRRVRKEDEGLYTCQAC---SVLGCAKVEAFFIIEGAQEKT 105

Query: 187 D 187
           +
Sbjct: 106 N 106

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 79.1 bits (194), Expect = 2e-17
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 21/201 (10%)

Query: 88  QTADLKCSVQY-------ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTT 137
               + CS  Y       +    V W +         +  + +    +      RF+L  
Sbjct: 16  LCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLG 75

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDNSTRSVI 194
           D +     LSI + +  D G Y   V    + K      ++ L V       D       
Sbjct: 76  DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LEP 134

Query: 195 VSEGQTVYLYC----YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
           +  G+   L C         P  T SW  +  +         R + L +    +      
Sbjct: 135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS--PLDPETTRSSELTLTPRPEDHGTNL 192

Query: 251 YCVAQNGVGRG-MKRNIAVEV 270
            C  +    +   +R + + V
Sbjct: 193 TCQMKRQGAQVTTERTVQLNV 213

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 48/213 (22%)

Query: 191 RSVIVSEGQTVYLYCY-------ANGFPAPTISWRRDNSAALSTG--------------- 228
           +SV V EG  V + C            P   + W RD                       
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67

Query: 229 -------GSIYRGNI-LKIPNITKTDRGTYYCVAQNGVGR-------GMKRNIAVEVEFA 273
                  G + + N  L I +    D G+Y+   + G           +   +   +E  
Sbjct: 68  QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
            +  +     G+  +    L    EA PP    W  + +  ++ +    S          
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSE--------- 178

Query: 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             L +            C+   +      E  +
Sbjct: 179 --LTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVEAYPPPA 304
            TY   +   V R           +AP +         +G        + C V AYP   
Sbjct: 1   ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGN----QVNITCEVFAYPSAT 49

Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
           I W +DG  + ++ + ++  + T      + L V       FG Y C A N+ G    E 
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPS---ASYLEVTPDSENDFGNYNCTAVNRIGQESLEF 106

Query: 365 EL 366
            L
Sbjct: 107 IL 108

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-- 233
                  P +       V   EG  V + C    +P+ TISW RD     S+  S  +  
Sbjct: 13  RGSHMYAPKLQGPVA--VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIY 70

Query: 234 ----GNILKIPNITKTDRGTYYCVAQNGVG 259
                + L++   ++ D G Y C A N +G
Sbjct: 71  NTPSASYLEVTPDSENDFGNYNCTAVNRIG 100

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
              ++ C V  A     I W +       + LP S       + S  ++   P  S   L
Sbjct: 34  NQVNITCEVF-AYPSATISWFRDG-----QLLPSS-------NYSNIKIYNTPSASY--L 78

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP-----IISDNSTRSVIVS 196
            +    E D G Y C  +  +    S E  L+    P        +  + +  V 
Sbjct: 79  EVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQVEPYSSTAQVQ 132

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 77.6 bits (191), Expect = 4e-17
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 19/169 (11%)

Query: 92  LKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150
           L         Y  + W+     K +E  P   +G   + +S F+   D + +   L I  
Sbjct: 19  LTILKHPLASYQRLTWLHTTNQKILEYFP---NGKKTVFESVFKDRVDLDKTNGALRIYN 75

Query: 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF 210
           + + D G Y   ++     +   ++ + V          ++ +I  E     L C     
Sbjct: 76  VSKEDRGDYYMRML--HETEDQWKITMEVYEMV------SKPMIYWECSNATLTCEVLEG 127

Query: 211 PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
               +   +      S            +       R  + C A N V 
Sbjct: 128 TDVELKLYQGKEHLRSLRQKT-------MSYQWTNLRAPFKCKAVNRVS 169

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 43/192 (22%)

Query: 187 DNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRR---------DNSAALSTGGSIYRGNI 236
           D S  +V    G  V L    +       ++W             +   +   S+++  +
Sbjct: 3   DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62

Query: 237 --------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-APVITINRPRQGQAL 287
                   L+I N++K DRG YY    +      K  + V      P+I           
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWE-------- 114

Query: 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
             +A L C V       +   +    + + +  ++S+  T+                   
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR----------------A 158

Query: 348 QYACKAANKYGS 359
            + CKA N+   
Sbjct: 159 PFKCKAVNRVSQ 170

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 75.2 bits (185), Expect = 6e-17
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF 325
           +A+ V + P +      +   L+ +  +E  V   PPP + W+ +G  +  ++   V  +
Sbjct: 1   VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHV-EY 56

Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
               E S+  L          G Y   A N  G+A + I  
Sbjct: 57  YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 22/116 (18%), Positives = 31/116 (26%), Gaps = 15/116 (12%)

Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN---------SAAL 225
           V L V  PP +                 +     G P PT+ W  +              
Sbjct: 1   VALTVYYPPRV----VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56

Query: 226 STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281
              G I  G  L     T  + G Y  +A+N +G    + I       P       
Sbjct: 57  YQEGEISEGC-LLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 8/71 (11%), Positives = 15/71 (21%), Gaps = 9/71 (12%)

Query: 124 GSLIIHDSRFQLTTDPETSTY--ILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELI 178
           G  +       +    E       L   +    + G Y         N     +  +   
Sbjct: 43  GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA----KNPLGTANQTINGH 98

Query: 179 VRRPPIISDNS 189
             + P   D  
Sbjct: 99  FLKEPFPVDEV 109

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----SIYRGNI 236
           R   I D   + V V EG TV   C A+G P P I W       +S       +++    
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442

Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
           L++      D GTY C+A N  G
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGG 465

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNN---QHYSVSHFATS 328
              I   + +Q    + +     C  +  PPPAI+W+     +++       +V      
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV------ 437

Query: 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             F D +L V   + +  G Y C AAN  G+      L
Sbjct: 438 --FPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-ALSTGGSI 231
                       +         V+ G TV L C     P+P I W +D     L      
Sbjct: 1   GSSGSSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV- 58

Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVG 259
                L +P I   D+GTY CVA +   
Sbjct: 59  -----LILPEIGPQDQGTYSCVATHSSH 81

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 16/90 (17%)

Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
              + +  P  G         L C V A P P I W+KDGV +                 
Sbjct: 10  EVQLVV-EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------------- 54

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQ 361
               L +  I  +  G Y+C A +     Q
Sbjct: 55  PSPVLILPEIGPQDQGTYSCVATHSSHGPQ 84

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 27/120 (22%), Positives = 36/120 (30%), Gaps = 28/120 (23%)

Query: 65  SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMS 123
           S +S      +    +        T  L C V  A   P I WMK        PLP+  S
Sbjct: 3   SGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGV-----PLPLPPS 56

Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI-ISLNNKVSAEVELIVRRP 182
             LI+ +                    I   D G Y C     S   + S  V + +  P
Sbjct: 57  PVLILPE--------------------IGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 74.1 bits (182), Expect = 4e-16
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 239 IPNITKTDRGTYYCVAQNGVGRG---MKRNIAVEVEFAPVITINRPRQGQALQ-YDAILE 294
           +     +       +  N V      ++     +    P  T       + ++   A  +
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFD 62

Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
           C VE YP P ++W KD   +  ++H+ + +    DE  + SL +  +      +Y CKA 
Sbjct: 63  CKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCKAV 118

Query: 355 NKYGSAQ 361
           N  G A 
Sbjct: 119 NSLGEAT 125

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 11/125 (8%)

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDNSTRSVIVSEGQTV 201
           I  +   + + +          + N+   +    E      P  +  +   + V EG   
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFT-KTILDMEVVEGSAA 59

Query: 202 YLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGN---ILKIPNITKTDRGTYYCVAQ 255
              C   G+P P + W +D+   +         Y       L I  +   D   Y C A 
Sbjct: 60  RFDCKVEGYPDPEVMWFKDD-NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118

Query: 256 NGVGR 260
           N +G 
Sbjct: 119 NSLGE 123

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 22/113 (19%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
             A   C V+     P V+W K                + +     FQ+  D E     L
Sbjct: 57  SAARFDCKVE-GYPDPEVMWFK--------------DDNPVKESRHFQIDYD-EEGNCSL 100

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSE 197
           +I E+   D   Y C+ +   N+  + +   EL+V       +         E
Sbjct: 101 TISEVCGDDDAKYTCKAV---NSLGEATCTAELLVETMGKEGEGEGEGEEDEE 150

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
            P        S++V  G  + L C        +I+W RD    + +  +   G  +++ +
Sbjct: 8   QPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRD 66

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
               D G Y CV  +  G       +V V
Sbjct: 67  SIPADSGLYACVTSSPSGSDT-TYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 19/104 (18%)

Query: 268 VEVEFAPVITINRPR-----QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSV 322
           +  +  P              G  LQ    L C +      +I W++DGVQ++ +    +
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQ----LRCRLRD-DVQSINWLRDGVQLVESNRTRI 57

Query: 323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                    +   + V        G YAC  ++  GS      +
Sbjct: 58  ---------TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 74.2 bits (182), Expect = 6e-16
 Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 21/157 (13%)

Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
           V W +                   +    F++      +   L IK +   D+G Y    
Sbjct: 30  VRWER----GSTLVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNVT- 79

Query: 164 IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223
           + S N        L +R   ++S    + +I  E     L C         +   +    
Sbjct: 80  VYSTNGTRILNKALDLRILEMVS----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEH 135

Query: 224 ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
             S            +       R  + C A N V +
Sbjct: 136 LRSLRQKT-------MSYQWTNLRAPFKCKAVNRVSQ 165

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 41/185 (22%)

Query: 193 VIVSEGQTVYLYC--YANGFPAPTISWRRDNSAALSTGGSIYRGNI-----------LKI 239
           V  + G  + L    +        + W R ++        +                LKI
Sbjct: 6   VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65

Query: 240 PNITKTDRGTYYCVAQNGVG-RGMKRNIAVEVE---FAPVITINRPRQGQALQYDAILEC 295
            N+T+ D GTY     +  G R + + + + +      P+I             +A L C
Sbjct: 66  KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECS--------NATLTC 117

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
            V       +   +    + + +  ++S+  T+                    + CKA N
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR----------------APFKCKAVN 161

Query: 356 KYGSA 360
           +    
Sbjct: 162 RVSQE 166

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 44/322 (13%), Positives = 85/322 (26%), Gaps = 62/322 (19%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISMSGSLII 128
            T+S  S ++         L  +V   +  P      W K D        P         
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQ-------PHE------- 48

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
                        +T  L++ +    +AG YK  V  +           ++    +I + 
Sbjct: 49  ------------NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNI 96

Query: 189 S-TRSVIVSEGQTVYLYC---YANGFPAP-----TISWRRDNSAALSTGGSIYRGNILKI 239
           +  +   VS    V L+    ++ G           SW +      +T         + I
Sbjct: 97  TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-------DITI 149

Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ--ALQYDAILECHV 297
              T    G Y              + + ++  A +       + +  AL  +  L   V
Sbjct: 150 QEFTADKNGVYTVKVWGESEDS-AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208

Query: 298 EA--------YPPPAIVWI----KDGVQIMNNQHYSVSHFATSDEFS-DTSLRVITIERR 344
                      P   I +     ++G          V         + D  L   +    
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268

Query: 345 QFGQYACKAANKYGSAQKEIEL 366
              ++ C A        + +E+
Sbjct: 269 DTAKFWCVAKLYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 69.9 bits (170), Expect = 1e-13
 Identities = 30/199 (15%), Positives = 51/199 (25%), Gaps = 37/199 (18%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP---TISWRRDNSAALSTGGSIYRGNIL 237
              +S  S        G    L     G  P P   T +W +D+    +   ++      
Sbjct: 2   AFTVSIQSN-KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLT----- 55

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILEC 295
            + + T  + G+Y    Q+        +    +E A +I      Q   +    D  L  
Sbjct: 56  -VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114

Query: 296 HVEAY---PPPAIV-----WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
            V+      P         W K    I   Q  ++  F                     G
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKN----------------G 158

Query: 348 QYACKAANKYGSAQKEIEL 366
            Y  K   +   +      
Sbjct: 159 VYTVKVWGESEDSAASAST 177

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 70.7 bits (173), Expect = 2e-15
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            TA L C V   D+  + W             +       + D+R +L          +S
Sbjct: 22  GTAILTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRA-SWHELSIS 74

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           + ++  +D G Y C +        +++  L V   P
Sbjct: 75  VSDVSLSDEGQYTCSL--FTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 13/79 (16%)

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-------------I 236
           T++V V EG T  L C  +     ++ W       L         +              
Sbjct: 13  TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72

Query: 237 LKIPNITKTDRGTYYCVAQ 255
           + + +++ +D G Y C   
Sbjct: 73  ISVSDVSLSDEGQYTCSLF 91

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 16/78 (20%)

Query: 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSD 333
            +G      AIL C V+     ++ W     Q +         +    +   +  +    
Sbjct: 19  VEGG----TAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL--- 71

Query: 334 TSLRVITIERRQFGQYAC 351
            S+ V  +     GQY C
Sbjct: 72  -SISVSDVSLSDEGQYTC 88

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 171 VSAEVELIVRRPPIISDNSTRS-VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
               +  I   P I      R   I   G+ + L     G P P + W +  +   ++  
Sbjct: 11  QPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV 70

Query: 230 SIYRGN---ILKIPNITKTDRGTYYCVAQNGVG 259
            +   +   +  +    ++D G Y    Q    
Sbjct: 71  HVRTSDFDTVFFVRQAARSDSGEYELSVQIENM 103

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 63.6 bits (155), Expect = 9e-13
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 266 IAVEVEFAPVITINRP-------RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ 318
              E+   P I + R        + G+ L     L    +  P P +VW K G  +  ++
Sbjct: 14  TIREIAEPPKIRLPRHLRQTYIRKVGEQLN----LVVPFQGKPRPQVVWTKGGAPLDTSR 69

Query: 319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                H  TSD   DT   V    R   G+Y      +       I +
Sbjct: 70  V----HVRTSDF--DTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 27/137 (19%)

Query: 53  GPSIIVALSFLISLASSQRTPTISY---ISQEQIKDIAQTADLKCSVQYADDYP---VIW 106
                  L+  +++      P I     + Q  I+ + +  +L    Q     P   V+W
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ---GKPRPQVVW 58

Query: 107 MKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS 166
            K        PL            SR  + T    +     +++   +D+G Y+  V I 
Sbjct: 59  TKGG-----APLD----------TSRVHVRTSDFDTV--FFVRQAARSDSGEYELSVQIE 101

Query: 167 LNNKVSAEVELIVRRPP 183
              K +A + + V    
Sbjct: 102 N-MKDTATIRIRVVEKA 117

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 70.8 bits (173), Expect = 4e-15
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 17/88 (19%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-------------- 236
            S     G +V L+C A G P P I W  +          ++ G                
Sbjct: 29  LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88

Query: 237 ---LKIPNITKTDRGTYYCVAQNGVGRG 261
              + I  + + D GTY C A N   R 
Sbjct: 89  ASTISIDTLVEEDTGTYECRASNDPDRN 116

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 56.6 bits (136), Expect = 4e-10
 Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 16/123 (13%)

Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIV 306
           G+ +    +  G      +              P   Q        L C     P P I 
Sbjct: 2   GSSHHHHHHSSG------LVPRGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQ 54

Query: 307 WIKDGVQIMNNQHY--------SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
           W  +G    +             V   AT  + + +++ + T+     G Y C+A+N   
Sbjct: 55  WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114

Query: 359 SAQ 361
              
Sbjct: 115 RNH 117

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLI 127
                        Q + +  + +L C        P I W             +     L 
Sbjct: 18  GSHMAGFVQAPLSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARL- 75

Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162
             D      T  + +   +SI  + E D G Y+C 
Sbjct: 76  --DRVHIHATYHQHAASTISIDTLVEEDTGTYECR 108

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 69.7 bits (171), Expect = 4e-15
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNILKIPNITKT 245
           RS+ V EG++    C  +G P PT++W R     LST            +  +I ++  +
Sbjct: 22  RSMTVYEGESARFSCDTDGEPVPTVTWLRKG-QVLSTSARHQVTTTKYKSTFEISSVQAS 80

Query: 246 DRGTYYCVAQNGVGR 260
           D G Y  V +N  G+
Sbjct: 81  DEGNYSVVVENSEGK 95

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 262 MKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
              + + +   A  I   +PR     +   A   C  +  P P + W++ G  +  +  +
Sbjct: 3   HHHHHSSKTTLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61

Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            V+          ++  + +++    G Y+    N  G  + E  L
Sbjct: 62  QVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 23/97 (23%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           ++A   C     +  P + W++               G ++   +R Q+TT    ST   
Sbjct: 30  ESARFSCDTD-GEPVPTVTWLR--------------KGQVLSTSARHQVTTTKYKST--F 72

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRR 181
            I  +Q +D G Y   V    N+  K  AE  L +++
Sbjct: 73  EISSVQASDEGNYSVVVE---NSEGKQEAEFTLTIQK 106

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232
           +     +   P  S    +   V EGQ   L C   G P P I+W  +    +    S  
Sbjct: 2   SSGSSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ-PIQYARSTC 59

Query: 233 RGNI--LKIPNITKTDRGTYYCVAQNGVGR 260
              +  L I +    D GTY C+A+N +G+
Sbjct: 60  EAGVAELHIQDALPEDHGTYTCLAENALGQ 89

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 267 AVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF 325
           +  +E AP  +    +    ++  D +L+C V   P P I W+ +G  I   +       
Sbjct: 5   SSGMEVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---- 59

Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
               E     L +        G Y C A N  G   
Sbjct: 60  ----EAGVAELHIQDALPEDHGTYTCLAENALGQVS 91

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.0 bits (169), Expect = 6e-15
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
            S +V  G  + L C        +I+W RD      +  +   G  +++ +    D G Y
Sbjct: 11  ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLY 69

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAP 274
            CV  +  G       +V V  A 
Sbjct: 70  ACVTSSPSGS-DTTYFSVNVSDAL 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
             G  LQ    L C +      +I W++DGVQ+  +    +         +   + V   
Sbjct: 16  HPGDLLQ----LRCRLRD-DVQSINWLRDGVQLAESNRTRI---------TGEEVEVQDS 61

Query: 342 ERRQFGQYACKAANKYGSAQKEIEL 366
                G YAC  ++  GS      +
Sbjct: 62  VPADSGLYACVTSSPSGSDTTYFSV 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 24/113 (21%)

Query: 72  TPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHD 130
           + +     +  +        L+C ++  DD   I W++         L  S         
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLR--DDVQSINWLRDG-----VQLAES--------- 46

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           +R ++T +       + +++    D+G+Y C    S +   +    + V    
Sbjct: 47  NRTRITGE------EVEVQDSVPADSGLYACVT-SSPSGSDTTYFSVNVSDAL 92

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 71.9 bits (176), Expect = 6e-15
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 28/188 (14%)

Query: 88  QTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPE 140
           + A L C             + W K       + +   MSG + I      R        
Sbjct: 10  EVATLSCGHNVSVEELAQTRIYWQKEK-----KMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNKVS----AEVELIVRRPPIISDNSTRSVIVS 196
            S   + I  ++ +D G Y+C V+    +       AEV L V+        S     + 
Sbjct: 65  LS---IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF--PTPSISDFEIP 119

Query: 197 EGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNIT------KTDRGT 249
                 + C    GFP P +SW  +     +   ++ +    ++  ++       T   +
Sbjct: 120 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS 179

Query: 250 YYCVAQNG 257
           + C+ + G
Sbjct: 180 FMCLIKYG 187

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 34/198 (17%)

Query: 193 VIVSEGQTVYLYCYANG----FPAPTISWRRDNSAALSTGGS--------------IYRG 234
           V     +   L C  N          I W+++    L+                      
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63

Query: 235 NI-LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-------APVITINRPRQGQA 286
           N+ + I  +  +D GTY CV         KR    EV          P I+         
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123

Query: 287 LQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
            +    + C     +P P + W+++G ++      +VS    ++ ++ +S   +      
Sbjct: 124 RR----IICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSS--KLDFNMTT 176

Query: 346 FGQYACKAANKYGSAQKE 363
              + C     +    + 
Sbjct: 177 NHSFMCLIKYGHLRVNQT 194

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 69.3 bits (170), Expect = 8e-15
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 263 KRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHY 320
             + + E + AP+    +P+  + L+     LEC + A PPP + W ++   +  N    
Sbjct: 5   HHHHSHEHKRAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRI 63

Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           S+      D     +L +  + ++  G Y   A N+ G       L
Sbjct: 64  SLY----QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
                     +R P+      +S  V EG +V L C  +  P P + W+R+N        
Sbjct: 3   HHHHHHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61

Query: 230 --SIYRGNI----LKIPNITKTDRGTYYCVAQNGVGR 260
             S+Y+ N     L I ++ K D G Y   A N  G 
Sbjct: 62  RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV 98

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 21/99 (21%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            +  L+C +  A   P + W +              +  ++  ++         T    L
Sbjct: 31  DSVKLECQIS-AIPPPKLFWKR--------------NNEMVQFNTDRISLYQDNTGRVTL 75

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
            IK++ + DAG Y    +   N     +    L V   P
Sbjct: 76  LIKDVNKKDAGWYTVSAV---NEAGVTTCNTRLDVTARP 111

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 71.1 bits (173), Expect = 2e-14
 Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 19/190 (10%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNIL 237
           ++  P+  +     V V+ G +  L C         ++ WR  +++ L    S    ++L
Sbjct: 3   LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-LGAVQSDTGRSVL 61

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
            + N + +  GT  CV   G GR  +  + + V   P      P     +  D  + C  
Sbjct: 62  TVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPEVACTA 118

Query: 298 EAYPPPAIVWIK----DGVQIMNNQHYSVSHFATSDE---------FSDTSLRVITIERR 344
               P     +      G Q +             +E         F  T    +     
Sbjct: 119 HKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGT 178

Query: 345 QFGQ-YACKA 353
                  C+A
Sbjct: 179 PVPPALYCQA 188

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 88  QTADLKCSV---QYADDYPVIWMKMDTAKKMEPLPISMSGSLII------HDSRFQLTTD 138
           + ADL C +     A+   + W+        + + +   G  +       +  R  +  D
Sbjct: 20  EDADLPCHLFPTMSAETMELKWVSSSL---RQVVNVYADGKEVEDRQSAPYRGRTSILRD 76

Query: 139 P-ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSE 197
                   L I  +  +D+G Y C      +     +  + ++   + SD     V   +
Sbjct: 77  GITAGKAALRIHNVTASDSGKYLCYFQ---DGDFYEKALVELKVAALGSDLHV-DVKGYK 132

Query: 198 GQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNIT------KTDRGTY 250
              ++L C +   +P P I W  +    + T  +    + + +  +        +     
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGV 192

Query: 251 YCVAQNGVGRGMKR-NIAVEVEFAP 274
            C  ++ +    K  +I++   F  
Sbjct: 193 SCTIRSSLLGLEKTASISIADPFFR 217

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 65.9 bits (160), Expect = 1e-12
 Identities = 33/223 (14%), Positives = 61/223 (27%), Gaps = 41/223 (18%)

Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSA------ 223
           A+++  V  P       +  ++   G+   L C+           + W   +        
Sbjct: 1   ADLQFSVLGP-------SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVY 53

Query: 224 -----------------ALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
                                   I  G   L+I N+T +D G Y C  Q+G        
Sbjct: 54  ADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKAL- 112

Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSH 324
             VE++ A + +               LEC     YP P I W  +  + +         
Sbjct: 113 --VELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV--EAPV 168

Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
            A        +   + +        +C   +     +K   + 
Sbjct: 169 VADGVGLYAVA-ASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 67.1 bits (164), Expect = 3e-14
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 180 RRPPIISDNST---RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI 236
           +R P  ++      R   V    TV   C A G P PT+ W ++          I    +
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFKQEHRIGGYKV 60

Query: 237 ------LKIPNITKTDRGTYYCVAQNGVGR 260
                 L + ++  +D+G Y CV +N  G 
Sbjct: 61  RNQHWSLIMESVVPSDKGNYTCVVENEYGS 90

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
               C     P P + W+K+G +                     SL + ++     G Y 
Sbjct: 26  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYT 81

Query: 351 CKAANKYGSAQKEIEL 366
           C   N+YGS      L
Sbjct: 82  CVVENEYGSINHTYHL 97

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 32/121 (26%)

Query: 69  SQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPIS 121
           ++R P  +   + + +  A     T   +C        P   + W+K             
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPMPTMRWLK------------- 44

Query: 122 MSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELI 178
            +G     + R           + L ++ +  +D G Y C V     N+   ++    L 
Sbjct: 45  -NGKEFKQEHRIGGYKV-RNQHWSLIMESVVPSDKGNYTCVVE----NEYGSINHTYHLD 98

Query: 179 V 179
           V
Sbjct: 99  V 99

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI---- 236
             P I D + R + +SEG+   L C     P  ++ W   N   LS      R ++    
Sbjct: 351 SAPFIMD-APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG 407

Query: 237 -LKIPNITKTDRGTYYCVAQNGVG 259
            L   ++  +D G Y C+  N  G
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG 431

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
           AP I  + PR     +   A L+C     P  ++ W+     ++++              
Sbjct: 352 APFIM-DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISV----L 404

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           +D +L    +     G Y C   N  G++     L
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 24/114 (21%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
           P I    ++      + A+LKC          + W+          LP   +G+++ H S
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCR---TPPMSSVKWL----------LP---NGTVLSHAS 396

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
           R    +     T  L+   +  +D G+Y C   +  N     +A   L V    
Sbjct: 397 RHPRISVLNDGT--LNFSHVLLSDTGVYTC---MVTNVAGNSNASAYLNVSTAG 445

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI---- 236
             P+I +     + V+EG    L C A+     ++SW   N   ++ G    R  +    
Sbjct: 340 YAPVIVE-PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397

Query: 237 -LKIPNITKTDRGTYYCVAQNGVGR 260
            L   N+T  D G Y C+  N VG 
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGN 422

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 274 PVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332
           PVI    P      +   A L+C        ++ WI     +M +  Y V         S
Sbjct: 342 PVIV-EPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAV----LS 395

Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           D +L    +  +  G Y C  +N  G+      L
Sbjct: 396 DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 23/114 (20%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
           P I     +        A+LKC    +     V W             I+ +G+++ H +
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA--STSLTSVSW-------------ITPNGTVMTHGA 386

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
                      T  L+   +   D G+Y C  ++S N+    +A   L V    
Sbjct: 387 YKVRIAVLSDGT--LNFTNVTVQDTGMYTC--MVS-NSVGNTTASATLNVTGTH 435

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 66.5 bits (163), Expect = 5e-14
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
            D I+   V+  P P + W+++   +  +Q      FA   E     LR++  ER   G 
Sbjct: 21  QDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR----RFAEEAEGGLCRLRILAAERGDAGF 76

Query: 349 YACKAANKYGSAQKEIEL 366
           Y CKA N+YG+ Q E  L
Sbjct: 77  YTCKAVNEYGARQCEARL 94

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNI--LKIPNITK 244
               V EGQ V +     G P P +SW R+    +      +     G +  L+I    +
Sbjct: 13  MDQSVREGQDVIMSIRVQGEPKPVVSWLRNR-QPVRPDQRRFAEEAEGGLCRLRILAAER 71

Query: 245 TDRGTYYCVAQNGVG 259
            D G Y C A N  G
Sbjct: 72  GDAGFYTCKAVNEYG 86

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 24/97 (24%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           Q   +   VQ  +  P V W++                  +  D R       E     L
Sbjct: 21  QDVIMSIRVQ-GEPKPVVSWLRN--------------RQPVRPDQRRFAEEA-EGGLCRL 64

Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR 180
            I   +  DAG Y C+ +    N+      E  L VR
Sbjct: 65  RILAAERGDAGFYTCKAV----NEYGARQCEARLEVR 97

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITK 244
             + V EG+   + C  +G P P +SW+ D    +    +          + L I  +T 
Sbjct: 17  GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDG-KPVRPDSAHKMLVRENGVHSLIIEPVTS 75

Query: 245 TDRGTYYCVAQNGVG 259
            D G Y C+A N  G
Sbjct: 76  RDAGIYTCIATNRAG 90

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              ++C V   P P + W  DG  +  +  + +       E    SL +  +  R  G Y
Sbjct: 26  LCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV----RENGVHSLIIEPVTSRDAGIY 81

Query: 350 ACKAANKYGSAQKEIEL 366
            C A N+ G     +EL
Sbjct: 82  TCIATNRAGQNSFSLEL 98

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 24/115 (20%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
           P       +      +   + C V      P + W                 G  +  DS
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQLD--------------GKPVRPDS 54

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPP 183
             ++    E   + L I+ +   DAGIY C       N+    S  +EL+V    
Sbjct: 55  AHKMLVR-ENGVHSLIIEPVTSRDAGIYTCIAT----NRAGQNSFSLELVVAAKE 104

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----IL 237
            P I   S R + +  G T  L     G P PT +W   +S A      +         +
Sbjct: 2   KPKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 238 KIPNITKTDRGTYYCVAQNGVG 259
             P+  + D G Y    +N +G
Sbjct: 61  FFPSAKRADSGNYKLKVKNELG 82

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              LE      P P   W              V   +++     TS+   + +R   G Y
Sbjct: 19  THNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST-----TSIFFPSAKRADSGNY 73

Query: 350 ACKAANKYGSAQKEIEL 366
             K  N+ G  +   E+
Sbjct: 74  KLKVKNELGEDEAIFEV 90

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 19/109 (17%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
           P I   S++       T +L+         P   W                  S      
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTV--------------GDSGAALAP 47

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
              +     T++  +     +  D+G YK +V   L  +  A  E+IV+
Sbjct: 48  ELLVDAKSSTTS--IFFPSAKRADSGNYKLKVKNEL-GEDEAIFEVIVQ 93

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN---SAALSTGGSIYRGNILKIPNIT 243
           +    +     G T+ + C         +     N    +  S G    R   L    + 
Sbjct: 250 EYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309

Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEV 270
             D G Y C A          ++ ++V
Sbjct: 310 VEDGGVYTCYAMGETFN-ETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 13/106 (12%)

Query: 264 RNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
            NI     F       +      G  L     + C  +      +       Q+++    
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTL----TIRCDTKQQGMTKVWVSPSNEQVLSQGSN 293

Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                          L    ++    G Y C A  +  +    +EL
Sbjct: 294 GSVSVRNG------DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            T  ++C  +       +W+        + L    +GS+ + +               L 
Sbjct: 262 DTLTIRCDTK-QQGMTKVWVSPS---NEQVLSQGSNGSVSVRNG-------------DLF 304

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST 190
            K++Q  D G+Y C   +      +  VEL V    +   + T
Sbjct: 305 FKKVQVEDGGVYTC-YAMGETFNETLSVELKVYNFTLHGHHDT 346

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
           +   VS          A G P PT  W +D   A++ GG            L+I     +
Sbjct: 14  QDTTVSSDSVAKFAVKATGEPRPTAIWTKDG-KAITQGGKYKLSEDKGGFFLEIHKTDTS 72

Query: 246 DRGTYYCVAQNGVG 259
           D G Y C  +N  G
Sbjct: 73  DSGLYTCTVKNSAG 86

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
             A         P P  +W KDG  I     Y +S      +     L +   +    G 
Sbjct: 22  SVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSGL 76

Query: 349 YACKAANKYGSAQKEIEL 366
           Y C   N  GS     +L
Sbjct: 77  YTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 25/97 (25%)

Query: 88  QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
             A         +  P   W K               G  I    +++L+ D       L
Sbjct: 22  SVAKFAVKAT-GEPRPTAIWTK--------------DGKAITQGGKYKLSEDKGGFF--L 64

Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR 180
            I +   +D+G+Y C V     N    VS+  +L ++
Sbjct: 65  EIHKTDTSDSGLYTCTVK----NSAGSVSSSCKLTIK 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 273 APVITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE 330
            P I   +  + Q ++      L   V    P    W+K   QI  ++H  V +      
Sbjct: 7   GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-- 62

Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              + L ++   +   G Y     NK GS Q ++ L
Sbjct: 63  ---SKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNI 236
            P I         V  G++V L+    G    T +W +     +     +       G+ 
Sbjct: 7   GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFR-KQIQESEHMKVENSENGSK 64

Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
           L I    +   G Y  + +N +G
Sbjct: 65  LTILAARQEHCGCYTLLVENKLG 87

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 19/118 (16%)

Query: 67  ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGS 125
           +S    P I    ++Q     ++ +L   V          WMK                 
Sbjct: 2   SSGSSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMK--------------FRK 46

Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
            I      ++      S   L+I   ++   G Y   V   L     A+V L V   P
Sbjct: 47  QIQESEHMKVENSENGSK--LTILAARQEHCGCYTLLVENKL-GSRQAQVNLTVVDKP 101

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNI----LKIPNITK 244
           +   + EG  V   C   G P P I W +D           +I R       L     T 
Sbjct: 16  KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75

Query: 245 TDRGTYYCVAQNGVGR 260
            D G Y  +A N  GR
Sbjct: 76  DDDGNYTIMAANPQGR 91

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDE 330
           AP   + + +  +  +       C V   P P I W KDG QI   + HY++      D 
Sbjct: 8   APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQ----RDL 62

Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
               SL          G Y   AAN  G   
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 17/99 (17%), Positives = 23/99 (23%), Gaps = 21/99 (21%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
                 C V   +  P + W K               G  I   S           T  L
Sbjct: 24  MPVTFTCRVA-GNPKPKIYWFK--------------DGKQISPKSDHYTIQRDLDGTCSL 68

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
                   D G Y        N   ++S    L+V+   
Sbjct: 69  HTTASTLDDDGNYTIMAA---NPQGRISCTGRLMVQAVN 104

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
               ++  V   P P + W  +G  + ++  + +       E    SL    +     G 
Sbjct: 21  RFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKM----IVSEKGLHSLIFEVVRASDAGA 76

Query: 349 YACKAANKYGSAQKEIEL 366
           YAC A N+ G A   ++L
Sbjct: 77  YACVAKNRAGEATFTVQL 94

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITK 244
            ++ + EG+   +    +G PAP +SW  +    + +             + L    +  
Sbjct: 13  ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNG-RTVQSDDLHKMIVSEKGLHSLIFEVVRA 71

Query: 245 TDRGTYYCVAQNGVG 259
           +D G Y CVA+N  G
Sbjct: 72  SDAGAYACVAKNRAG 86

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 24/96 (25%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           +   +   V      P V W                 G  +  D   ++    E   + L
Sbjct: 21  RFCRMDFKVS-GLPAPDVSWYLN--------------GRTVQSDDLHKMIVS-EKGLHSL 64

Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIV 179
             + ++ +DAG Y C       N+    +  V+L V
Sbjct: 65  IFEVVRASDAGAYACVAK----NRAGEATFTVQLDV 96

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 64.0 bits (155), Expect = 8e-13
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 188 NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------------- 233
           + +  + +S G+ + L C A       I +  +  ++      +                
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72

Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
            + L I  +T++D+G Y C A +G+    K +  V V   P +  
Sbjct: 73  LSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAF 116

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +   L C+ +   +  + +          P        L+  D + Q  ++ +     L+
Sbjct: 24  EKLVLNCTARTELNVGIDFNWEY------PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 77

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
           I  +  +D G+Y C    S          + V   P ++
Sbjct: 78  IDGVTRSDQGLYTCAA-SSGLMTKKNSTFVRVHEKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 276 ITINRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEFS 332
           + ++     +    +  +L C         I   W     +  + +  +      S    
Sbjct: 10  VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69

Query: 333 DTSLRVITIERRQF---GQYACKAANKYGSAQKEIEL 366
              L  +TI+       G Y C A++   + +    +
Sbjct: 70  KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 289 YDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
                 C +E Y     + W     Q+ N++ Y +++     E     L V  I +   G
Sbjct: 17  GHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----EDGVAILYVKDITKLDDG 71

Query: 348 QYACKAANKYGSAQKEIELF 367
            Y CK  N YG      ELF
Sbjct: 72  TYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSI---YRGNI--LKIPNITK 244
              +  EG  V   C    +   T ++W       L         Y   +  L + +ITK
Sbjct: 9   MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGV-RQLENSEKYEITYEDGVAILYVKDITK 67

Query: 245 TDRGTYYCVAQNGVGR 260
            D GTY C   N  G 
Sbjct: 68  LDDGTYRCKVVNDYGE 83

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 81  EQIKDIA----QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQL 135
            QI              C ++  D    V W                    + +  ++++
Sbjct: 6   GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF--------------GVRQLENSEKYEI 51

Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
           T +   +   L +K+I + D G Y+C+V+   N+  + S+  EL V+   
Sbjct: 52  TYEDGVAI--LYVKDITKLDDGTYRCKVV---NDYGEDSSYAELFVKGVR 96

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 67.2 bits (163), Expect = 9e-13
 Identities = 29/242 (11%), Positives = 62/242 (25%), Gaps = 18/242 (7%)

Query: 137 TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
             P  +  +  +  +   +     C      + + +A+  L V   P   + +       
Sbjct: 43  LLPGNNRKVYELSNV--QEDSQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99

Query: 197 EGQTVYLYCYA-NGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYY-C 252
            G+ + L C    G P    T+   R                +     + +   G  + C
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159

Query: 253 VAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILE--------CHVEAYPPPA 304
             +  +                + T   P     L    +LE        C ++   P +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219

Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
              +   +               +D FS  +   +T E     +  C       S +   
Sbjct: 220 EAQVHLALGDQRLNPTVTYG---NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 276

Query: 365 EL 366
            +
Sbjct: 277 TV 278

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 16/162 (9%)

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-------VSAEVELIVRRPP 183
            R     +P   T  + ++  ++     + C   + L  +        SA  +L     P
Sbjct: 131 KREPAVGEPAEVTTTVLVR--RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188

Query: 184 IISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSIYRGNILKIP-- 240
                     ++       + C  +G FP                    Y  +       
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 248

Query: 241 -NITKTDRGTYYCVAQNGVGRG---MKRNIAVEVEFAPVITI 278
            ++T  D GT        +G       + + +    AP + +
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 57.9 bits (139), Expect = 9e-10
 Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 18/179 (10%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK-TDRGT 249
             VI+  G +V + C  +      +         L     +  GN  K+  ++   +   
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQPKLLGIET----PLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA---IV 306
             C +    G+   +           + +      Q +  +  L C VE   P A   +V
Sbjct: 63  PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122

Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEI 364
            ++   ++             +          + + R   G  ++C+          E+
Sbjct: 123 LLRGEKEL---------KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 268 VEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326
             ++ AP IT+ R R  +     +     +V++ P   + W  +GV++  +     ++  
Sbjct: 3   FTLDHAPRITL-RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-- 59

Query: 327 TSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                   +L ++       G Y     N  G A     L
Sbjct: 60  ---TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
           RS  V  GQ           P   + W  +    L     I       +  L+I +    
Sbjct: 16  RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGV-ELQESSKIHYTNTSGVLTLEILDCHTD 74

Query: 246 DRGTYYCVAQNGVG 259
           D GTY  V  N  G
Sbjct: 75  DSGTYRAVCTNYKG 88

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 23/96 (23%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           Q      +VQ +     V W                +G  +   S+   T      T  L
Sbjct: 24  QNTRFILNVQ-SKPTAEVKWYH--------------NGVELQESSKIHYTNTSGVLT--L 66

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVR 180
            I +    D+G Y+       N   + S    L V 
Sbjct: 67  EILDCHTDDSGTYRAVCT---NYKGEASDYATLDVT 99

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
            +++  ++    +  QT  LKC      +  + W+            I ++   ++ +S+
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSG------FTIFLNEYPVLKNSK 55

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           +QL      +   +++  +   D G+YKC  +   ++  + EV++IV    
Sbjct: 56  YQLLHH-SANQLSITVPNVTLQDEGVYKC--LHYSDSVSTKEVKVIVLATM 103

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 188 NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN------------ 235
           N T ++ V EGQT+ L C  +     ++ W   +   +         N            
Sbjct: 6   NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65

Query: 236 -ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281
             + +PN+T  D G Y C+  +       + + V V         R 
Sbjct: 66  LSITVPNVTLQDEGVYKCLHYSDSVS--TKEVKVIVLATMKGEFCRY 110

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 12/74 (16%)

Query: 290 DAILECHVEAYPPPAIVWIK--------DGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
              L+C        ++ W+         +   ++ N  Y + H       +  S+ V  +
Sbjct: 18  TLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH----SANQLSITVPNV 73

Query: 342 ERRQFGQYACKAAN 355
             +  G Y C   +
Sbjct: 74  TLQDEGVYKCLHYS 87

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 53/291 (18%), Positives = 93/291 (31%), Gaps = 26/291 (8%)

Query: 88  QTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           ++A L C+V       P+ W +   A     L  +         +    +T  E   + +
Sbjct: 19  ESAILHCTVTSLIPVGPIQWFR--GAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76

Query: 147 SIKEIQETDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTVY 202
           SI  I   DAG Y C      +        A  EL VR  P     S  +   +   TV 
Sbjct: 77  SISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVS 136

Query: 203 LYCYANGF-PAP-TISWRRDNSAALSTG---------GSIYRGN-ILKIPNITKTDRGTY 250
             C ++GF P   T+ W + N   LS              Y  +   K+    +      
Sbjct: 137 FTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQV 195

Query: 251 YCVAQN--GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI--V 306
            C   +    G  ++    +        T+   +Q    +    + C V  + P  +   
Sbjct: 196 ICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLT 255

Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKAANK 356
           W+++G         +V+       ++  S L V     R   +  C+  + 
Sbjct: 256 WLENGNVSRTETASTVTE-NKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 42/221 (19%), Positives = 68/221 (30%), Gaps = 30/221 (13%)

Query: 189 STRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNI----------- 236
             +SV V+ G++  L+C      P   I W R    A     +   G+            
Sbjct: 9   PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK 68

Query: 237 -------LKIPNITKTDRGTYYCVAQNG------VGRGMKRNIAVEVEFAPVITINRPRQ 283
                  + I NIT  D GTYYCV             G    ++V  + +  +    P  
Sbjct: 69  RENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAA 127

Query: 284 GQALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVIT 340
               Q+     C    + P  I   W K+G ++ + Q  +V     S  +S  S  +V+ 
Sbjct: 128 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT-NVDPVGESVSYSIHSTAKVVL 186

Query: 341 IERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
                  Q  C+ A+            +             
Sbjct: 187 TREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV 227

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGNI--LKIPNITK 244
           +S  V +G   +      G P P   W ++    +     IY      N+  L I ++T 
Sbjct: 13  QSQTVGQGSDAHFRVRVVGKPDPECEWYKNG-VKIERSDRIYWYWPEDNVCELVIRDVTG 71

Query: 245 TDRGTYYCVAQNGVG 259
            D  +    A N  G
Sbjct: 72  EDSASIMVKAINIAG 86

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
            DA     V   P P   W K+GV+I  +            E +   L +  +       
Sbjct: 21  SDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWY----WPEDNVCELVIRDVTGEDSAS 76

Query: 349 YACKAANKYGSA 360
              KA N  G  
Sbjct: 77  IMVKAINIAGET 88

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 22/96 (22%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
             A  +  V      P   W K              +G  I    R       E +   L
Sbjct: 21  SDAHFRVRVV-GKPDPECEWYK--------------NGVKIERSDRIYWYWP-EDNVCEL 64

Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVR 180
            I+++   D+     + I   N   + S+   L+V+
Sbjct: 65  VIRDVTGEDSASIMVKAI---NIAGETSSHAFLLVQ 97

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 63.0 bits (153), Expect = 4e-12
 Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 22/157 (14%)

Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
           V+W K             +  S     S F+     +T +  L+I  +  +D   Y+ E 
Sbjct: 26  VLWKKQKD------KVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79

Query: 164 IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223
               N   + +  L V          ++ +I  E     L C         +   +    
Sbjct: 80  P---NITDTMKFFLYVLEMV------SKPMIYWECSNATLTCEVLEGTDVELKLYQGKE- 129

Query: 224 ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
                  +       +       R  + C A N V +
Sbjct: 130 ------HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 41/186 (22%)

Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI------YRGNI------- 236
           ++ +       V  +   +  P   + W++          S       ++  +       
Sbjct: 2   SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 237 -LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV-EVEFAPVITINRPRQGQALQYDAILE 294
            L I N+T +D   Y   + N     MK  + V E+   P+I             +A L 
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDT-MKFFLYVLEMVSKPMIYWE--------CSNATLT 111

Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
           C V       +   +    + + +  ++S+  T+                    + CKA 
Sbjct: 112 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR----------------APFKCKAV 155

Query: 355 NKYGSA 360
           N+    
Sbjct: 156 NRVSQE 161

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 61.9 bits (150), Expect = 5e-12
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
             P     +      + +  I    V+  P P++ W+ +G  +             +   
Sbjct: 2   HMPASV--QLHTAVEMHHWCI-PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 332 S--DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           +     LR+        G Y   AAN +G A   I  
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 14/84 (16%)

Query: 191 RSVIVSEGQTVYLYC---YANGFPAPTISWRRDN-----------SAALSTGGSIYRGNI 236
            SV +     ++ +C     +G PAP++ W  +                       R   
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 237 LKIPNITKTDRGTYYCVAQNGVGR 260
           L++   T  + G Y  +A N  G+
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQ 88

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 146 LSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTV 201
             I  +    AG Y+C+  I     + S  +EL+V      P +S  + R +++  G+ +
Sbjct: 66  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS--ADRGLVLMPGENI 123

Query: 202 YLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
            L C +   P    S  ++   +L    S        +  +     G Y C  
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 29/186 (15%), Positives = 47/186 (25%), Gaps = 18/186 (9%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----I 236
             P IS  S  S ++    +V + C A      T      NS     G  +   N     
Sbjct: 8   PMPFISAKS--SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAIL 293
             I ++     G Y C  + G  R    +   + V   +                 +  L
Sbjct: 66  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL 125

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
            C     P       K+G          +S           +  +  ++    G Y C  
Sbjct: 126 TCSSAHIPFDRFSLAKEG---------ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176

Query: 354 ANKYGS 359
                 
Sbjct: 177 WYNRSP 182

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 40/314 (12%), Positives = 85/314 (27%), Gaps = 37/314 (11%)

Query: 67  ASSQRTPTIS--YISQEQIKDIAQTADLKCSVQ--YADDYPVIWMKMDTAKKMEPLPISM 122
           +     PT+     S +       T  L C V         + W++      ++    S 
Sbjct: 2   SRDFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST 61

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI--ISLNNKVSAEVELIVR 180
           +                 ++   L++ +        Y C+V          + +      
Sbjct: 62  TQE----GELA-------STQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNP 110

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTISWRRDNSAALSTG-------- 228
           R      +      +   ++  + C             ++W R +   ++          
Sbjct: 111 RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQR 170

Query: 229 GSIYRGN-ILKIPNITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQG 284
                    L +      +  TY C   +                   AP +      + 
Sbjct: 171 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEW 230

Query: 285 QALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDE-FSDTS-LRVIT 340
              +    L C ++ + P  I   W+ + VQ+ + +H +     T    F   S L V  
Sbjct: 231 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTR 290

Query: 341 IERRQFGQYACKAA 354
            E  Q  ++ C+A 
Sbjct: 291 AEWEQKDEFICRAV 304

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 63.3 bits (153), Expect = 5e-11
 Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 14/171 (8%)

Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ 255
           S    + +Y   N  P     W              +    L I           + V  
Sbjct: 89  SPPGLLNVYVKVNNGPLGNPIWNIS-----GDPTRTWNRAELAISTFWPNFYQVIFEVIT 143

Query: 256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ----YDAILECHVEAYPPPAIVWIKDG 311
           +G  +G      V+V   P        + Q ++      A  +C               G
Sbjct: 144 SG-HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202

Query: 312 VQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKAANKYGSAQ 361
              ++ +   +     +      +   V+   +R  G+Y C    + G   
Sbjct: 203 ---IDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI 250

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 18/163 (11%)

Query: 121 SMSGSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           ++SG      +R +L       + Y +  + I     G    + +  L +          
Sbjct: 111 NISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP--------- 161

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---- 235
                      ++V V+ GQ     C A G                       +      
Sbjct: 162 -CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220

Query: 236 ---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
                 + N TK D G Y C+ +   G G+     + V+  PV
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 19/115 (16%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           Q A  +CS                  +  PL                  T         +
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-------------VTSSRRFIASFN 226

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI------ISDNSTRSVIVS 196
           +    + DAG Y+C +       +S   EL+V+ PP+      ++      + + 
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQ 281

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.5 bits (141), Expect = 8e-11
 Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 16/86 (18%)

Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALSTGGSIY-------------RG 234
           +   V  G+ +              PTI W +     L++    +               
Sbjct: 15  QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGR 260
             ++I        G Y C        
Sbjct: 75  FEMQIIKAKDNFAGNYRCEVTYKDKF 100

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 278 INRPRQGQALQ-YDAILECHVEAYP---PPAIVWIKDGVQIMNN---QHYSVSH-FATSD 329
           I +P+ G      D      V+A      P I W K     + +   +H  +   F    
Sbjct: 11  IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70

Query: 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                 +++I  +    G Y C+   K        +L
Sbjct: 71  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 88  QTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETST 143
           +       V+ A+D      + W K     K   L       L + ++           T
Sbjct: 23  EDITFIAKVK-AEDLLRKPTIKWFK----GKWMDLASKAGKHLQLKETF---ERHSRVYT 74

Query: 144 YILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDN 188
           + + I + ++  AG Y+CEV      K    S   +L V      + N
Sbjct: 75  FEMQIIKAKDNFAGNYRCEVT----YKDKFDSCSFDLEVHESTGTTPN 118

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 58.6 bits (141), Expect = 9e-11
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            T  LKC V+  +D  + W             +       + D+R QL T        +S
Sbjct: 54  GTVVLKCQVKDHEDSSLQWSNPAQQ------TLYFGEKRALRDNRIQLVTSTPH-ELSIS 106

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           I  +   D G Y C +        +A+  + V   P
Sbjct: 107 ISNVALADEGEYTCSI--FTMPVRTAKSLVTVLGIP 140

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 14/105 (13%)

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---------- 235
           S   T    V  G TV L C        ++ W       L  G      +          
Sbjct: 41  SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100

Query: 236 ---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE-FAPVI 276
               + I N+   D G Y C       R  K  + V      P+I
Sbjct: 101 HELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPII 145

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 48/221 (21%)

Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-----TISWRR-------- 219
           A++++ +            + I      V ++C              I+W          
Sbjct: 1   ADLKVEMMAGG--------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE 52

Query: 220 -------------DNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
                            A+ +   +  G+  L++P I   + G Y C       +     
Sbjct: 53  VKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGT- 111

Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVS 323
           + +EV  +P   +    Q    + +    C    + P AI   W K   Q   +      
Sbjct: 112 VQLEVVASPASRLL-LDQVGMKENEDKYMCESSGFYPEAINITWEKQT-QKFPHPIEISE 169

Query: 324 HFATSDE-------FSDTS-LRVITIERRQFGQYACKAANK 356
              T          F+ TS L++ + +      Y C   + 
Sbjct: 170 DVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 14/145 (9%)

Query: 88  QTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
               + C++ Y+         + W         E       G       R      P   
Sbjct: 19  DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQE-AFRPGAIVSPWRL 77

Query: 143 T---YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
                 L +  IQ  +AG Y+CEV+++   K    V+L V   P       +  +     
Sbjct: 78  KSGDASLRLPGIQLEEAGEYRCEVVVT-PLKAQGTVQLEVVASPASRLLLDQVGMKENED 136

Query: 200 TVYLYCYANGF--PAPTISWRRDNS 222
                C ++GF   A  I+W +   
Sbjct: 137 K--YMCESSGFYPEAINITWEKQTQ 159

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 88  QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
           QT  ++C      +      W K  +A     L  S     +   SRF +  DP+   + 
Sbjct: 26  QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFT 85

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVEL 177
           +++ +++E D+G Y C +    +N VS  V  
Sbjct: 86  VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRF 117

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 13/176 (7%)

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRG 248
             R   V  G +++L C  N                 +  G   R    ++ +I + +  
Sbjct: 8   QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--RWLARQLVDIREPE-T 64

Query: 249 TYYCVAQNGVGRGMKRNIAVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPA--- 304
              C  +    R ++    +     P  + +      Q +  +  L C V    P A   
Sbjct: 65  QPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLT 123

Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGS 359
           +  ++   +++                       +   R   G  ++C+A      
Sbjct: 124 LTLLRGAQELIRRSFAGE----PPRARGAVLTATVLARREDHGANFSCRAELDLRP 175

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%)

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
              + +I+E       C         + A   +   + P   +          G+   L 
Sbjct: 53  ARQLVDIRE-PETQPVCFFR-CARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLS 110

Query: 205 CYA-NGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
           C      P    T++  R           + R +    P   +    T   +A
Sbjct: 111 CRVPGAGPRASLTLTLLRGAQ-------ELIRRSFAGEPPRARGAVLTATVLA 156

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} Length = 124

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 15/107 (14%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 88  QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
            +  ++C     +   Y   W +    +  + L  +      +   R  +  + +  T+ 
Sbjct: 18  GSLTVQCVYRSGWET-YLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFT 76

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
           ++++++ +TDA  Y C +  +  N +   V++ +   P+  + ++ S
Sbjct: 77  VTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEETSSS 122

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 55.4 bits (133), Expect = 5e-10
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 16/85 (18%)

Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALSTG-------------GSIYRG 234
           +   V+ G ++       G      P + W +     LS+               S    
Sbjct: 12  QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71

Query: 235 NILKIPNITKTDRGTYYCVAQNGVG 259
             L I +      G+Y C       
Sbjct: 72  FELHITDAQPAFTGSYRCEVSTKDK 96

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 7/84 (8%)

Query: 290 DAILECHVEAYP---PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT----SLRVITIE 342
                  V       PP + W K     ++++         S + +       L +   +
Sbjct: 21  SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80

Query: 343 RRQFGQYACKAANKYGSAQKEIEL 366
               G Y C+ + K         L
Sbjct: 81  PAFTGSYRCEVSTKDKFDCSNFNL 104

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 88  QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
            +      V  A       V W K     K   L   +   L +HDS        +   +
Sbjct: 20  GSITFSARVAGASLLKPPVVKWFK----GKWVDLSSKVGQHLQLHDS---YDRASKVYLF 72

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
            L I + Q    G Y+CEV  + +    +   L V
Sbjct: 73  ELHITDAQPAFTGSYRCEV-STKDKFDCSNFNLTV 106

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 172 SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI 231
            +   +  RR  II D     V V EG +    C  +      + W  D +  L      
Sbjct: 4   GSSGLVQGRRVHIIED--LEDVDVQEGSSATFRCRISPANYEPVHWFLDKT-PLHANELN 60

Query: 232 Y------RGNILKIPNITKTDRGTYYCVA 254
                    ++L +  +   D GT Y  A
Sbjct: 61  EIDAQPGGYHVLTLRQLALKDSGTIYFEA 89

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A   C +       + W  D   +  N+   +     +       L +  +  +  G  
Sbjct: 30  SATFRCRISPANYEPVHWFLDKTPLHANELNEI----DAQPGGYHVLTLRQLALKDSGTI 85

Query: 350 ACKAANKYGSAQ 361
             +A ++  SA 
Sbjct: 86  YFEAGDQRASAA 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 20/98 (20%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            +A  +C +  A+  PV W                  + +  +   ++        ++L+
Sbjct: 29  SSATFRCRISPANYEPVHWFL--------------DKTPLHANELNEIDAQ-PGGYHVLT 73

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
           ++++   D+G    E          A   L V   P +
Sbjct: 74  LRQLALKDSGTIYFEA-----GDQRASAALRVTEKPSV 106

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 7/124 (5%)

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDN 188
            +L++       +L I  ++ + AG Y+C           S ++EL+       P +S  
Sbjct: 41  EKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS-- 98

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRG 248
           +     VS G  V L C    +     +  ++   A       +      I  +T    G
Sbjct: 99  AQPGPAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSG 157

Query: 249 TYYC 252
           TY C
Sbjct: 158 TYRC 161

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 22/181 (12%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
            P +      S +V   + V L C             + +S+             L IP 
Sbjct: 8   KPSLQALP--SSLVPLEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAV------LFIPA 58

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILECHVE 298
           + ++  G Y C  QNG    +  +   +     FA      +P    +   D  L+C   
Sbjct: 59  MKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTR 118

Query: 299 AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
            Y        K+G                    +   +  +T      G Y C + +   
Sbjct: 119 -YGFDQFALYKEGDPAPYKNPERWYR-------ASFPIITVTAAHS--GTYRCYSFSSRD 168

Query: 359 S 359
            
Sbjct: 169 P 169

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSA------------ALSTG 228
           P I+     +     G  V   C A        T +W  DN A                G
Sbjct: 11  PQITVQPE-TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69

Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
             +    IL++ N+  T  G Y CV  N  G        + +
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEF 331
           P IT+    Q      D    C   +     +   W  D   + + +  + +H       
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 332 SDTSLRVITIERRQF---GQYACKAANKYGSAQ 361
                 ++ +   +F   G Y C  +N +GS+ 
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P I+   + Q           CS   + D P+ +      + ++            H   
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD----AEMENYAHLRA 66

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
                   T+   L ++ ++ T  G Y+C +     +  S    L +
Sbjct: 67  QGGELMEYTTI--LRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 88  QTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----------DSRFQ 134
           + A L CS          P+ W K          P S   + ++            SR+Q
Sbjct: 10  KNAYLPCSYTLPTSGTLVPMCWGK-------GFCPWSQCTNELLRTDERNVTYQKSSRYQ 62

Query: 135 LTTDPETSTYILSIKEIQETDAGIYKCEVIIS-LNNKVSAEVELIVR 180
           L  D       L IK +   D G Y C +    L N    E++L ++
Sbjct: 63  LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 27/107 (25%)

Query: 192 SVIVSEGQTVYLYC---YANGFPAPTISWRRD-------NSAALSTG------------- 228
              V  G+  YL C            + W +         +  L T              
Sbjct: 3   GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ 62

Query: 229 --GSIYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVE 271
             G + +G++ L I N+T  D GTY C +   G+    K  + ++++
Sbjct: 63  LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-- 233
            +  ++          +  VS+G  + L           + W ++    +   GS Y   
Sbjct: 9   SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQE-IQMSGSKYIFE 66

Query: 234 --GNI--LKIPNITKTDRGTYYCVAQN 256
             G    L I   +  D   Y CV   
Sbjct: 67  SIGAKRTLTISQCSLADDAAYQCVVGG 93

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 267 AVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF 325
           +++ + +           Q  + +   L   +       + W+K+G +I      S S +
Sbjct: 9   SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI----QMSGSKY 63

Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
                 +  +L +          Y C    +  S +
Sbjct: 64  IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 21/93 (22%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
               L   +    D  V W+K           I MSGS      ++   +        L+
Sbjct: 32  HKIRLTVELA-DHDAEVKWLKNGQ-------EIQMSGS------KYIFESIGAK--RTLT 75

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
           I +    D   Y+C V      K S   EL V+
Sbjct: 76  ISQCSLADDAAYQCVVG---GEKCST--ELFVK 103

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVR---RPPIISDNSTRSVIV 195
             +     I ++    AG Y C   +    ++ S  ++L+V      P +S        V
Sbjct: 53  RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLS--VHPGPEV 110

Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
             G+ V  YC  +   +  +  +   S+ +  G    +     +  +T   RGTY C  
Sbjct: 111 ISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAE-FPLGPVTTAHRGTYRCFG 168

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 19/181 (10%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG---NILK 238
            P I        +V + + V + C  N + A       + S                   
Sbjct: 4   KPFIWAEP--HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 60

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILEC 295
           IP++     G Y C+ + G       N   + V   +        P             C
Sbjct: 61  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
            ++       + +K+G     + H    +     EF    L  +T   R  G Y C  + 
Sbjct: 121 RLD-TATSMFLLLKEG----RSSHVQRGYGKVQAEF---PLGPVTTAHR--GTYRCFGSY 170

Query: 356 K 356
            
Sbjct: 171 N 171

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 263 KRNIAVEVEFAPVITINRPRQGQALQYD-AILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
            R+   +   A    I +P   +  +   A   C V A  PP + W KD  ++  +  Y 
Sbjct: 471 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530

Query: 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
             +       +D  L +  ++    G+Y  +A N YG+ ++ + L 
Sbjct: 531 KRY-----NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI--YRGNI--LKIPNITKTD 246
               V EGQ+   YC       P ++W +D+     +   +  Y GN   L I  +   D
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549

Query: 247 RGTYYCVAQNGVGR 260
           +G Y   A+N  G 
Sbjct: 550 KGEYTVRAKNSYGT 563

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 26/124 (20%)

Query: 67  ASSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
            SS  +  +  +S +    +     +   L C +   D +P  W K              
Sbjct: 1   GSSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVD-FPATWYK-------------- 45

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
            G  +       +  D       L + E +  D+G ++C         VSA   + V+ P
Sbjct: 46  DGQKVEESELLVVKMDGRKHR--LILPEAKVQDSGEFECRT-----EGVSAFFGVTVQDP 98

Query: 183 PIIS 186
              S
Sbjct: 99  SGPS 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
             +L C + +       W KDG ++  ++   V       +     L +   + +  G++
Sbjct: 27  RVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAKVQDSGEF 80

Query: 350 ACKAANKYGSAQ 361
            C+         
Sbjct: 81  ECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 13/84 (15%)

Query: 182 PP--IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIY 232
            P  I+S     S+  +  + V L C  +       +W +D           +   G  +
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKH 65

Query: 233 RGNILKIPNITKTDRGTYYCVAQN 256
           R   L +P     D G + C  + 
Sbjct: 66  R---LILPEAKVQDSGEFECRTEG 86

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTRSVIVS 196
            +     I ++    AG Y C   +    ++ S  ++L+V      P +S +      V 
Sbjct: 57  INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH--PGPEVI 114

Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQN 256
            G+ V  YC  +   +  +  +   S+ +  G    +     +  +T   RGTY C    
Sbjct: 115 SGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAE-FPLGPVTTAHRGTYRCFGSY 173

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 27/181 (14%), Positives = 49/181 (27%), Gaps = 19/181 (10%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG---NILK 238
            P I        +V + + V + C  N + A       + S                   
Sbjct: 7   KPFIWAEP--HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 63

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILEC 295
           IP++     G Y C+ + G       N   + V   +        P             C
Sbjct: 64  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 123

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
            ++       + +K+G      + Y           ++  L  +T   R  G Y C  + 
Sbjct: 124 RLD-TATSMFLLLKEGRSSHVQRGYGKVQ-------AEFPLGPVTTAHR--GTYRCFGSY 173

Query: 356 K 356
            
Sbjct: 174 N 174

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 55.0 bits (132), Expect = 9e-09
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIVRR---PPIISDNSTRSVIVSEG 198
            SI  + +  AG Y+C   ++ +       S  +++++      P +S  +     V  G
Sbjct: 64  FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLS--AQPGPTVLAG 121

Query: 199 QTVYLYCYANGFPAPTISWRRDNSAA---LSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
           ++V L C  +          R+  A     S G  +        P    T  GTY C  
Sbjct: 122 ESVTLSCS-SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFG 179

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 55.3 bits (133), Expect = 9e-09
 Identities = 29/224 (12%), Positives = 57/224 (25%), Gaps = 28/224 (12%)

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIV---RRPPIISDNSTRSVIVSEG 198
            ++  +    AG Y C      +       S  V ++V    R P +  +     +V  G
Sbjct: 76  FNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH--PGPLVKSG 133

Query: 199 QTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-----ILKIPNITKTDRGTYYCV 253
           + V L C+++          ++  +   +       +        I  +     GTY C 
Sbjct: 134 ERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCY 192

Query: 254 AQNGVGRGM------KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVW 307
                            +I V   +       +P           L C            
Sbjct: 193 GSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYDMYHL 251

Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
            ++G      +  +V     + +                G Y C
Sbjct: 252 SREGGA-HERRLPAVRKVNRTFQADFPLGPA-----THGGTYRC 289

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 28/203 (13%), Positives = 54/203 (26%), Gaps = 25/203 (12%)

Query: 172 SAEVELIV---RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG 228
             + +      +  P +S     S +V  G  V L C+            +++   +   
Sbjct: 11  DDDDKGSHMGGQDKPFLSAWP--SAVVPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIF 67

Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK------RNIAVEVEFAPVITINRPR 282
                     +  +T    G Y C   +               I V         +  P 
Sbjct: 68  HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127

Query: 283 Q----GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV 338
                G+ +    IL+C  +          K+G+     +  S       D  S  +  +
Sbjct: 128 PLVKSGERV----ILQCWSD-IMFEHFFLHKEGIS----KDPSRLVGQIHDGVSKANFSI 178

Query: 339 ITIERRQFGQYACKAANKYGSAQ 361
             +     G Y C  +  +   Q
Sbjct: 179 GPMMLALAGTYRCYGSVTHTPYQ 201

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 9/132 (6%)

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIV-RRPPII 185
           SR         S    SI  +    AG Y+C   ++         S  ++++V       
Sbjct: 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP 220

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA---LSTGGSIYRGNILKIPNI 242
           S ++     V  G++V L C +           R+  A    L     + R      P  
Sbjct: 221 SLSAQPGPKVQAGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLG 279

Query: 243 TKTDRGTYYCVA 254
             T  GTY C  
Sbjct: 280 PATHGGTYRCFG 291

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVR---RPPIISDNSTR 191
                 +    SI  + E  AG Y+C     +   + S  +EL++      P +S  +  
Sbjct: 50  NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLS--ALP 107

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-----ILKIPNITKTD 246
           S +V+ G++V L C  +  P  T    ++ +A          G         +  +T   
Sbjct: 108 SPLVTSGKSVTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH 166

Query: 247 RGTYYC 252
            GTY C
Sbjct: 167 GGTYRC 172

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 14/177 (7%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGN--IL 237
             P +        ++S G +V ++C      A      ++ + A       +   N    
Sbjct: 4   PKPTLWAEP--GSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARF 60

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILE 294
            IP++T+   G Y C  ++ VG     +   + +   ++       P           L 
Sbjct: 61  SIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLL 120

Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
           C     P    +  K+             H A   + ++  +  +T      G Y C
Sbjct: 121 CQSR-SPMDTFLLCKER-AAHPLLCLRSEHGAQQHQ-AEFPMSPVTSVHG--GTYRC 172

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 9/129 (6%)

Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIV-RRPPIIS 186
           R         S    SI  + +  AG Y+C   ++ +       S  +++++       S
Sbjct: 51  RLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPS 110

Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNIT 243
            ++     V  G+ V L C  +          R+  A      +  + N       P   
Sbjct: 111 LSAQPGPTVLAGENVTLSCS-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGP 169

Query: 244 KTDRGTYYC 252
            T  GTY C
Sbjct: 170 ATHGGTYRC 178

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 22/100 (22%)

Query: 88  QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
           ++   +C + +       +W                 G  +   SRFQ T       YIL
Sbjct: 24  ESCSFECVLSHESASDPAMWTV--------------GGKTVGSSSRFQATRQGRK--YIL 67

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
            ++E   +DAG     V       ++++  LIVR     S
Sbjct: 68  VVREAAPSDAGEVVFSV-----RGLTSKASLIVRERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 6/73 (8%)

Query: 290 DAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
               EC +         +W   G  + ++  +  +      +     L V        G+
Sbjct: 25  SCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGRKYILVVREAAPSDAGE 79

Query: 349 YACKAANKYGSAQ 361
                      A 
Sbjct: 80  VVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 191 RSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGSI---YRGN--ILKIPNITK 244
           +++ V EG++    C  ++   +    W       + +        +G   IL +     
Sbjct: 16  KTMEVLEGESCSFECVLSHESASDPAMWTVGGKT-VGSSSRFQATRQGRKYILVVREAAP 74

Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
           +D G      +    +    ++ V     P 
Sbjct: 75  SDAGEVVFSVRGLTSKA---SLIVRERSGPS 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 17/101 (16%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
             + V   +     C  +     T  W ++           +S  G  ++   L I ++ 
Sbjct: 16  ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHK---LVIDDVR 71

Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG 284
             D G Y  V          +   +      V     P  G
Sbjct: 72  PEDEGDYTFVPDGYALSLSAK---LNFLEIKVS---GPSSG 106

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 28/123 (22%)

Query: 67  ASSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
           + S     +     + I D+     + A  KC V   +     W K              
Sbjct: 3   SGSSGQLEVL----QDIADLTVKAAEQAVFKCEVS-DEKVTGKWYK-------------- 43

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
           +G  +    R  ++       + L I +++  D G Y           +S   +L     
Sbjct: 44  NGVEVRPSKRITISHV--GRFHKLVIDDVRPEDEGDYTFVPD---GYALSLSAKLNFLEI 98

Query: 183 PII 185
            + 
Sbjct: 99  KVS 101

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A+ +C V         W K+GV++  ++  ++SH           L +  +     G Y
Sbjct: 25  QAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDVRPEDEGDY 78

Query: 350 ACKAANKYGSAQ 361
                    S  
Sbjct: 79  TFVPDGYALSLS 90

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 168 NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA---- 223
            +       L VR  PI      R+   +EG T  L C  +      + W + +      
Sbjct: 4   GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDG 61

Query: 224 ---ALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
              +L   G+      L+I  +   D G Y C+ 
Sbjct: 62  DRHSLRQDGARCE---LQIRGLVAEDAGEYLCMC 92

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 23/96 (23%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            TA L+C +      PV W K                  +    R  L  D       L 
Sbjct: 35  ATAVLRCELS--KMAPVEWWK--------------GHETLRDGDRHSLRQDGAR--CELQ 76

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           I+ +   DAG Y C        K      L VR  P
Sbjct: 77  IRGLVAEDAGEYLCMC-----GKERTSAMLTVRAMP 107

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A+L C +       + W K    + +   +S+       + +   L++  +     G+Y
Sbjct: 36  TAVLRCELS--KMAPVEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAEDAGEY 88

Query: 350 ACKAANKYGSAQ 361
            C    +  SA 
Sbjct: 89  LCMCGKERTSAM 100

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 172 SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------A 224
           S+          I+  +    V     + V L C     P   + W +D           
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60

Query: 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
           L    ++ R   L +P +   D G Y C  
Sbjct: 61  LQKEDTVRR---LVLPAVQLEDSGEYLCEI 87

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 28/125 (22%)

Query: 65  SLASSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLP 119
           S  SS    +   +       +A    +   L C +     +  V W K           
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTK----------- 48

Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
               G  ++      L  +       L +  +Q  D+G Y CE+     +  SA   + V
Sbjct: 49  ---DGEEVVESPALLLQKEDTVRR--LVLPAVQLEDSGEYLCEI-----DDESASFTVTV 98

Query: 180 RRPPI 184
             PP+
Sbjct: 99  TEPPV 103

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
             +L C +   P   + W KDG +++ +    +       E +   L +  ++    G+Y
Sbjct: 30  RVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSGEY 83

Query: 350 ACKAANKYGSAQ 361
            C+  ++  S  
Sbjct: 84  LCEIDDESASFT 95

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 88  QTADLKCSVQ-YADDYPVIWMKMDTAK-KMEPLPISMSGSLIIH--DSRFQLTTDPETST 143
               L C+   Y       W +        +   I  +G  + +   SR+ L        
Sbjct: 13  HPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGD 72

Query: 144 YILSIKEIQETDAGIYKCEVIIS-LNNKVSAEVELIVRRPPI 184
             L+I+   E+D+G+Y C V I    N       L V+   +
Sbjct: 73  VSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 25/112 (22%)

Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDN----------------------SAAL 225
           S   V    G  V L C Y+      T  W R                        S+  
Sbjct: 3   SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62

Query: 226 STGGSIYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAPV 275
           +  G I  G++ L I N  ++D G Y C V   G     K   +++V+   V
Sbjct: 63  NLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A+ E   E      + W + G  I  +  Y ++      E +  +L V  +     G Y
Sbjct: 25  PAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT-----EGTRHTLTVREVGPADQGSY 78

Query: 350 ACKAANKYGSAQ 361
           A  A +      
Sbjct: 79  AVIAGSSKVKFD 90

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGN 235
            ++P        RSV V+ G                + W+R  S  +S          G 
Sbjct: 4   GKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSD-ISASNKYGLATEGT 61

Query: 236 I--LKIPNITKTDRGTYYCVA 254
              L +  +   D+G+Y  +A
Sbjct: 62  RHTLTVREVGPADQGSYAVIA 82

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 22/92 (23%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
             A  +   +      V W +               GS I   +++ L T+    T  L+
Sbjct: 24  SPAVFEAETE-RAGVKVRWQR--------------GGSDISASNKYGLATEGTRHT--LT 66

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           ++E+   D G Y              + +L V
Sbjct: 67  VREVGPADQGSYAVIA-----GSSKVKFDLKV 93

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 88  QTADLKC--SVQYADDYPVIWMKMDTAK-KMEPLPISMSGSLIIH--DSRFQLTTDPETS 142
               L C  S       P+ W   +          I  +G  + H  +SR+QL  +    
Sbjct: 13  HPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEG 72

Query: 143 TYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPP 183
              L+I+     D G Y C V I    + V   +E+     P
Sbjct: 73  NVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 26/112 (23%)

Query: 189 STRSVIVSEGQTVYLYC-Y-ANGFPAPTISWRRDN----------------------SAA 224
           S  +V    G  V L C Y  +      + W                          ++ 
Sbjct: 3   SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62

Query: 225 LSTGGSIYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAP 274
               G+I  GN+ L I N    D G Y C V   G    +   + V+ E  P
Sbjct: 63  YQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 22/96 (22%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
             A L+C +  +   PV W                  +++    ++ L  +       L 
Sbjct: 24  GAATLRCVLS-SVAAPVKWCY--------------GNNVLRPGDKYSLRQEGAMLE--LV 66

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           ++ ++  D+G Y C          +    L V   P
Sbjct: 67  VRNLRPQDSGRYSCSF-----GDQTTSATLTVTALP 97

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
           + + V EG    L C  +   AP + W   N+  L  G        G +  L + N+   
Sbjct: 16  KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNV-LRPGDKYSLRQEGAMLELVVRNLRPQ 73

Query: 246 DRGTYYCVA 254
           D G Y C  
Sbjct: 74  DSGRYSCSF 82

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A L C + +   P + W      +     YS+       E +   L V  +  +  G+Y
Sbjct: 25  AATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSGRY 78

Query: 350 ACKAANKYGSAQ 361
           +C   ++  SA 
Sbjct: 79  SCSFGDQTTSAT 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
               V+ G+ V L C  +    P + W +D  A        +   G++     L I   +
Sbjct: 16  EDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGAS 71

Query: 244 KTDRGTYYCVAQNGVG 259
             D G Y C  +    
Sbjct: 72  LKDAGEYTCEVEASKS 87

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 22/96 (22%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +  +L+C +      PV W+K D                I    ++ +  +   +   L 
Sbjct: 24  EDVELRCELS-RAGTPVHWLK-D-------------RKAIRKSQKYDVVCEGTMAM--LV 66

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           I+     DAG Y CEV         +   L V    
Sbjct: 67  IRGASLKDAGEYTCEV-----EASKSTASLHVEEKA 97

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           D  L C +     P + W+KD   I  +Q Y V       E +   L +     +  G+Y
Sbjct: 25  DVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTMAMLVIRGASLKDAGEY 78

Query: 350 ACKAANKYGSAQ 361
            C+      +A 
Sbjct: 79  TCEVEASKSTAS 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 17/93 (18%)

Query: 169 NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA----- 223
           +  S +V +  +  P   +     V    G +  L C         ++W +D        
Sbjct: 3   SGSSGKV-VFAKEQPAHRE-----VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSS 55

Query: 224 --ALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
              +   G   R   L +    + + G Y C A
Sbjct: 56  KVRVEAVGCTRR---LVVQQAGQAEAGEYSCEA 85

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A L C V       + W KDG ++ ++    V             L V    + + G+Y
Sbjct: 28  SATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQAGQAEAGEY 81

Query: 350 ACKAANKYGSAQ 361
           +C+A  +  S +
Sbjct: 82  SCEAGGQQLSFR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 22/92 (23%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            +A L C V       V W K D             G  +   S+ ++     T    L 
Sbjct: 27  ASATLSCEVA-QAQTEVTWYK-D-------------GKKLSSSSKVRVEAVGCTRR--LV 69

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           +++  + +AG Y CE              L V
Sbjct: 70  VQQAGQAEAGEYSCEA-----GGQQLSFRLQV 96

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 78  ISQEQIKDIA-QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----- 129
           +S++ I     Q   L C           + W K          P S   + ++      
Sbjct: 1   MSEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGK-------GSCPNSKCNAELLRTDGTR 53

Query: 130 -----DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPP 183
                 +++ L    +     L+I      D+G+Y C + +    N V   V L +RR  
Sbjct: 54  IISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRAL 113

Query: 184 I 184
           +
Sbjct: 114 V 114

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 26/113 (23%)

Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPT-ISWRRD-------NSAALSTGGS--------- 230
           S  ++I   GQ V L C Y +   +   + W +        N+  L T G+         
Sbjct: 2   SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61

Query: 231 ------IYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAPV 275
                 +  G + L I N  + D G Y C +   G    +K+N+ +E+  A V
Sbjct: 62  YTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNI--LKIPNITK 244
                  G+ V L C  +      + W ++    +    S YR    G    L I   TK
Sbjct: 15  EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73

Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
            D   Y  +   G        ++V+++  P
Sbjct: 74  ADAAEYSVMTTGGQSSA---KLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              LEC V       + W K+G +I+       S +    E     L +    +    +Y
Sbjct: 24  RVELECEVSE-DDANVKWFKNGEEIIPGPK---SRYRIRVEGKKHILIIEGATKADAAEY 79

Query: 350 ACKAANKYGSAQKEIEL 366
           +        SA+  ++L
Sbjct: 80  SVMTTGGQSSAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 18/96 (18%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +  +L+C V   DD  V W K              +G  II   + +     E   +IL 
Sbjct: 23  ERVELECEVS-EDDANVKWFK--------------NGEEIIPGPKSRYRIRVEGKKHILI 67

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           I+   + DA  Y          + SA++ + ++  P
Sbjct: 68  IEGATKADAAEYSVMT---TGGQSSAKLSVDLKSGP 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 21/96 (21%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           +   LKC +  +++ P  W K              +G  +    R ++        + L 
Sbjct: 23  KEICLKCEI--SENIPGKWTK--------------NGLPVQESDRLKVVQK--GRIHKLV 64

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           I      D G Y           V+   ++ V   P
Sbjct: 65  IANALTEDEGDYVFAPD---AYNVTLPAKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 12/74 (16%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
               V+ G+ + L C  +        W ++           +   G I++   L I N  
Sbjct: 15  TDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRIHK---LVIANAL 69

Query: 244 KTDRGTYYCVAQNG 257
             D G Y       
Sbjct: 70  TEDEGDYVFAPDAY 83

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 7/71 (9%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           +  L+C +    P    W K+G+ +  +    V       +     L +        G Y
Sbjct: 24  EICLKCEISENIPG--KWTKNGLPVQESDRLKVVQ-----KGRIHKLVIANALTEDEGDY 76

Query: 350 ACKAANKYGSA 360
                    + 
Sbjct: 77  VFAPDAYNVTL 87

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 52.9 bits (126), Expect = 5e-08
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAALSTGGSIY-RG 234
           L  RR P   + +   +    G +V L C         T+ W     AA S        G
Sbjct: 1   LAPRRCPAQ-EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMK 263
             L + ++   D G Y C         + 
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPAGTVH 88

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
           ++   SEG T  L C  +      + W++           +L   G+      L+I +++
Sbjct: 16  KTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE---LQIHDLS 70

Query: 244 KTDRGTYYCVAQN 256
             D G Y C+   
Sbjct: 71  VADAGEYSCMCGQ 83

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 23/97 (23%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            TA L+C +  +   PV W K                  +    R+ L  D       L 
Sbjct: 24  ATATLQCEL--SKVAPVEWKK--------------GPETLRDGGRYSLKQDGTR--CELQ 65

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184
           I ++   DAG Y C        +      L VR  P 
Sbjct: 66  IHDLSVADAGEYSCMC-----GQERTSATLTVRALPA 97

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A L+C +       + W K    + +   YS+       + +   L++  +     G+Y
Sbjct: 25  TATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAGEY 77

Query: 350 ACKAANKYGSAQ 361
           +C    +  SA 
Sbjct: 78  SCMCGQERTSAT 89

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)

Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTR 191
                 +    SI  + E  AG Y+C        ++ S  +EL+V      P +S  +  
Sbjct: 50  NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLS--ALP 107

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGN-----ILKIPNITKT 245
           S +V+ G+ V L C  +           +    LS T  S    +     +  +  +T +
Sbjct: 108 SPVVTSGENVTLQCG-SRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPS 166

Query: 246 DRGTYYCVAQN 256
            R    C    
Sbjct: 167 HRWMLRCYGSR 177

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 13/184 (7%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGN--ILK 238
              +        ++S G +V + C      A      ++ +     T   +   N     
Sbjct: 5   KATLWAEP--GSVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFS 61

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILEC 295
           IP++T+   G Y C   +  G     +   + V   +        P        +  L+C
Sbjct: 62  IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQC 121

Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
                     +  ++G   ++    S    +   + +   +  +T   R      C  + 
Sbjct: 122 GSR-LRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ-ALFPVGPVTPSHR--WMLRCYGSR 177

Query: 356 KYGS 359
           ++  
Sbjct: 178 RHIL 181

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 14/137 (10%)

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRR---PPII 185
                            I  I     G Y+C          + S  +EL+V      P +
Sbjct: 45  PWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTL 104

Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGN-----ILKI 239
           S     S +V+ G  V L C  +          ++          S          I  +
Sbjct: 105 SA--QPSPVVNSGGNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSV 161

Query: 240 PNITKTDRGTYYCVAQN 256
             ++ + R  Y C A +
Sbjct: 162 GPVSPSRRWWYRCYAYD 178

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 16/186 (8%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG---NILK 238
            P +        ++++G  V L C             R+   A                 
Sbjct: 5   KPTLWAEP--GSVITQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIPQELVKKGQFP 61

Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE-----FAPVITINRPRQGQALQYDAIL 293
           IP+IT    G Y C   +      + +  +E+        P ++   P        +  L
Sbjct: 62  IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ-PSPVVNSGGNVTL 120

Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
           +C          +  K+G         S  H   S   +  S+  ++  RR    Y C A
Sbjct: 121 QCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSR-AIFSVGPVSPSRR--WWYRCYA 176

Query: 354 ANKYGS 359
            +    
Sbjct: 177 YDSNSP 182

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 9/75 (12%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI--------LKIPNI 242
               V  G  V +    +      + W ++            R           L   ++
Sbjct: 16  EDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74

Query: 243 TKTDRGTYYCVAQNG 257
            + DRG Y  +   G
Sbjct: 75  VQEDRGRYQVITNGG 89

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              +   V +     ++W+K+GV++     +  + +    +     L    + +   G+Y
Sbjct: 25  RVEMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKDGKRHILIFSDVVQEDRGRY 82

Query: 350 ACKAANKYGSAQ 361
                     A+
Sbjct: 83  QVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
              ++   V   +   V+WMK         + ++   S     +R++   D +   +IL 
Sbjct: 24  DRVEMAVEVSE-EGAQVMWMK-------NGVELTREDSF---KARYRFKKDGKR--HILI 70

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
             ++ + D G Y+        N    E ELIV
Sbjct: 71  FSDVVQEDRGRYQVIT-----NGGQCEAELIV 97

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A  E  + + P     W   G  +  +    +       +     L +   +    G+ 
Sbjct: 22  TAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNCQLGMTGEV 75

Query: 350 ACKAANKYGSAQ 361
           + +AAN   +A 
Sbjct: 76  SFQAANTKSAAN 87

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 11/73 (15%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
             V V  G+T +        P     W+             +   G  +    L + N  
Sbjct: 13  YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI---LILHNCQ 68

Query: 244 KTDRGTYYCVAQN 256
               G     A N
Sbjct: 69  LGMTGEVSFQAAN 81

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 11/116 (9%), Positives = 27/116 (23%), Gaps = 30/116 (25%)

Query: 69  SQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG 124
           +     +     + +  +     +TA  +  +    D    W                 G
Sbjct: 2   AMALIEVE----KPLYGVEVFVGETAHFEIELSE-PDVHGQWKL--------------KG 42

Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
             +      ++  D +     L +   Q    G    +          +   L V+
Sbjct: 43  QPLAASPDCEIIEDGKKHI--LILHNCQLGMTGEVSFQA-----ANTKSAANLKVK 91

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
                  + A P   + W K+G +I  +  Y   H     +     L +   +     +Y
Sbjct: 25  RVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNCQMTDDSEY 78

Query: 350 ACKAANKYGSAQ 361
              A ++  S +
Sbjct: 79  YVTAGDEKCSTE 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 11/82 (13%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRG 234
               +     +  V +G  V         P   + W ++               G     
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRI- 64

Query: 235 NILKIPNITKTDRGTYYCVAQN 256
             L I N   TD   YY  A +
Sbjct: 65  --LFINNCQMTDDSEYYVTAGD 84

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 17/96 (17%), Positives = 22/96 (22%), Gaps = 22/96 (22%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
                   +       V W K              +G  I   +++           IL 
Sbjct: 24  GRVRFVVELAD-PKLEVKWYK--------------NGQEIRPSTKYIFEHK--GCQRILF 66

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           I   Q TD   Y                EL VR  P
Sbjct: 67  INNCQMTDDSEYYVTA-----GDEKCSTELFVRSGP 97

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 14/168 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
           + + V    ++ + C                +  L    +              +     
Sbjct: 10  KKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDTVL 65

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG-QALQYDAILECHVEAYPPPA---IV 306
            C      G+    N  V V   P   I   +    A+     +EC V    P     + 
Sbjct: 66  QCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124

Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ-YACKA 353
             +    +           A       T+    T +R    + ++C A
Sbjct: 125 LFRGNETLHYETFGK----AAPAPQEATATFNSTADREDGHRNFSCLA 168

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A+  C  E +P   + W K  +++  +  +  S      E     L +  +E+     Y
Sbjct: 25  TAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSDTY 78

Query: 350 ACKAANKYGSAQ 361
            C        AQ
Sbjct: 79  TCDIGQAQSRAQ 90

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
            ++ V E  T    C     PA T++WR+             S  G   R   L I  + 
Sbjct: 16  TNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLR---LTISALE 71

Query: 244 KTDRGTYYCVA 254
           K D  TY C  
Sbjct: 72  KADSDTYTCDI 82

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 22/97 (22%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            TA   C  ++     V W K                  +    + Q + +  T    L+
Sbjct: 24  GTAVFTCKTEHPA-ATVTWRK--------------GLLELRASGKHQPSQEGLTLR--LT 66

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184
           I  +++ D+  Y C++      +  +  +L+V+    
Sbjct: 67  ISALEKADSDTYTCDI-----GQAQSRAQLLVQGRRS 98

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 92  LKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150
           L  S    ++Y  + W      K +E             +S+F+     +  +  L I +
Sbjct: 24  LNISESLPENYKQLTWFYTFDQKIVEWDS----RKSKYFESKFKGRVRLDPQSGALYISK 79

Query: 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
           +Q+ D   Y   V+    N+   +++L V  P 
Sbjct: 80  VQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPV 112

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 22/110 (20%)

Query: 192 SVIVSEGQTVYLYCYAN-GFPAPTISWRRD--------NSAALSTGGSIYRGNI------ 236
            + V  G  V L    +       ++W           +S       S ++G +      
Sbjct: 13  HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72

Query: 237 --LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV----ITINR 280
             L I  + K D  TY        G   +  I ++V   PV    I I +
Sbjct: 73  GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDPVPKPVIKIEK 121

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens} Length = 110

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 88  QTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
            +  ++C   Y          W +       + + +   GS    + R  +   P   ++
Sbjct: 12  GSLSVQC--PYEKEHRTLNKYWCRPPQIFLCDKI-VETKGSAGKRNGRVSIRDSPANLSF 68

Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIV 179
            ++++ + E DAG Y C V             EVE+ V
Sbjct: 69  TVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSV 106

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens} Length = 106

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 88  QTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            +  ++C  +  D     +W +    +  +PL +S +        R    TD       +
Sbjct: 13  SSILVQCHYRLQDVKAQKVWCRFL-PEGCQPL-VSSAVDRRAPAGRRTFLTDLGGGLLQV 70

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
            +  +QE DAG Y C V  +   ++   V L +  PP
Sbjct: 71  EMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI-LPP 106

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 20/179 (11%)

Query: 195 VSEGQTVYLYCYANGFPAP---TISWRRDNSAALSTG------GSIYRGN-ILKIPNITK 244
           +  G    L C   G       T +W   +  +   G         Y  + +L       
Sbjct: 16  LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 75

Query: 245 TDRGTYYCVAQN---GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYP 301
               T+ C A             + +       V  +  P +  AL     L C    + 
Sbjct: 76  NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS 135

Query: 302 PPAIV--WIKDGVQIMNNQHYSVSHFATSDE----FSDTS-LRVITIERRQFGQYACKA 353
           P  ++  W++   ++   ++ + +      +    F+ TS LRV   + ++   ++C  
Sbjct: 136 PKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMV 194

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 20/181 (11%)

Query: 192 SVIVSEGQTVYLYCYANGF----PAPTISWRRDNSAALS---------TGGSIYRGNILK 238
             ++  G T  + C         P    SW  D+    +         +  ++   + L 
Sbjct: 26  KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELP 85

Query: 239 IPNITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILEC 295
           I      +  T+ C   +G          +        P +    P + +  Q    + C
Sbjct: 86  IVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITC 145

Query: 296 HVEA-YPPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACK 352
            V+  YPP     W  +G    N ++ +     T   +   S L V     +Q   + C 
Sbjct: 146 MVKGFYPPDIYTEWKMNGQPQENYKN-TPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCS 204

Query: 353 A 353
            
Sbjct: 205 V 205

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 25/180 (13%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            + +L C +    D  + W K       + LP      L++ D  F    D  +  Y+  
Sbjct: 15  TSVELTCPLD--SDENLKWEKNG-----QELPQKHDKHLVLQD--FSEVED--SGYYVCY 63

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD--------NSTRSVIVSEGQ 199
                +      K  V  + + K  A  +   ++     D        N  +        
Sbjct: 64  TPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG 123

Query: 200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
           +V L C   G    TI W +D S            N   + N  K  RGTY C       
Sbjct: 124 SVLLTC---GLTDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETS 177

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 47/187 (25%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT-DRGTYYCVAQN 256
           G +V L C  +      + W ++                L + + ++  D G Y C    
Sbjct: 14  GTSVELTCPLD--SDENLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPA 66

Query: 257 G-------------VGRGMKRNIAVEVE---------FAPVITINRPRQGQALQYD--AI 292
                              K++ A + +          +         Q    + D   +
Sbjct: 67  SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL 126

Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
           L C +       I W+KDG  I            +    +  +  +    +   G Y C+
Sbjct: 127 LTCGL---TDKTIKWLKDGSII------------SPLNATKNTWNLGNNAKDPRGTYQCQ 171

Query: 353 AANKYGS 359
            A +  +
Sbjct: 172 GAKETSN 178

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 20/179 (11%)

Query: 194 IVSEGQTVYLYCYANGF----PAPTISWRRDNSAALST--------GGSIYRGN-ILKIP 240
           +++   T  + C         P    SW  D+    +           S +R    L I 
Sbjct: 14  VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIM 73

Query: 241 NITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
           +    +   + C   +           +       AP +    P + Q  +    L C +
Sbjct: 74  HQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMI 133

Query: 298 EAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKA 353
             + P  I   W  +G     N   +     T   +   S L V          + C  
Sbjct: 134 TDFFPEDITVEWESNGQPA-ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV 191

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 117

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 88  QTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
            +  + C   Y            W +         L  S       +  R  LT  PE  
Sbjct: 16  NSVSITC--YYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73

Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           T++++I ++ + D+G YKC + I+ +  +S +V L V
Sbjct: 74  TFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119

 Score = 43.7 bits (103), Expect = 8e-06
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 88  QTADLKCSVQY------ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTD 138
               + C   Y      ++    IW    +      + I      ++      R +L  +
Sbjct: 16  SCLLIPCIFSYPADVPVSNGITAIWYYDYS--GKRQVVIHSGDPKLVDKRFRGRAELMGN 73

Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNK 170
            +     L +K+++  D+G Y     IS +N+
Sbjct: 74  MDHKVCNLLLKDLKPEDSGTYNFRFEISDSNR 105

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 28/188 (14%)

Query: 195 VSEGQTVYLYCYANGFPAP---TISWRRDNSAALST--------GGSIYRGN-ILKIPNI 242
           +       L C     P+    +++W R+ S  L              Y  +  + +   
Sbjct: 25  LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84

Query: 243 TKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA 299
                  + C  Q+    +               P+I    P   +       L C V  
Sbjct: 85  DWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRG 144

Query: 300 YPPPAI--VWIKDGVQI----------MNNQHYSVSHFATSDEFSDTS-LRVITIERRQF 346
           + P  I   W++D   +          +  +  +       D F   S + V T +    
Sbjct: 145 FRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGG 204

Query: 347 GQYACKAA 354
             +AC A 
Sbjct: 205 TVFACMAV 212

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 37/145 (25%)

Query: 171 VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSA---- 223
           +    +  V  P          +    G    L C            + W R   +    
Sbjct: 1   MRGSGQFRVIGP-------GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53

Query: 224 -------------------ALSTGGSIYRGNI-LKIPNITKTDRGTYYCVAQNGVGRGMK 263
                                    SI  G + L+I N+  +D G Y C  ++   +   
Sbjct: 54  LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEA 113

Query: 264 RNIAVEVEFAPVITINRPRQGQALQ 288
             + ++VE  P   IN P + ++  
Sbjct: 114 -AVELKVE-DPFYWIN-PGRSRSHH 135

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} Length = 113

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 13/93 (13%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 88  QTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
            +  ++C       DY   W +    +  + L  + +   ++  +R  +  +     + +
Sbjct: 17  GSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTV 76

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           ++++++ +DAGIY C +          +V + +
Sbjct: 77  TMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNI 108

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 88  QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPET 141
               ++C       Y    V W+    +  +       +G  I       R +++     
Sbjct: 17  GDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPG 76

Query: 142 STYILSIKEIQETDAGIYKCEVIISLNN----KVSAEVELIVRR 181
               L I  +Q  D   Y CEV     +         +EL VR+
Sbjct: 77  DVS-LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 46/221 (20%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPL-PISMSGSLIIHDSRFQ----LTTDPETS 142
            +A++ C +       + W      K  + L       S ++ +S        T      
Sbjct: 18  SSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRK 77

Query: 143 TYILSIKEIQETDAGIYKC------------------EVIISLNNKVSAEVELIVRRPPI 184
              + ++ + E D+G+Y C                   V     +   A+ +   +    
Sbjct: 78  NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQ 137

Query: 185 ISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISW-------------RRDNSAALSTGGS 230
               +  SV +   + V L C Y   + +  I W             R+ +    +  G 
Sbjct: 138 KVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGR 197

Query: 231 IYRGNI--------LKIPNITKTDRGTYYCVAQNGVGRGMK 263
            Y  N         L I  +   D   Y+C     + R  K
Sbjct: 198 -YSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADK 237

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 12/108 (11%)

Query: 88  QTADLKCSVQ----YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS------RFQLTT 137
               L CS       +DD    W       +        +      D       R Q   
Sbjct: 15  SQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG 74

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-SAEVELIVR-RPP 183
           DP      + I  +  +D G + C+V    +    +++V L V  + P
Sbjct: 75  DPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 8/136 (5%)

Query: 119 PISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
           P +  G++            P T      +  +Q    G Y   + +         +EL 
Sbjct: 229 PAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELA 287

Query: 179 VRRPPIIS-DNSTRSVIVSEGQTVYLYCYANGF---PAPTISWRRDNSAALSTGGSIYRG 234
           V +PP +S   +T +          L C  + F       + W                G
Sbjct: 288 VYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG--PGGRSQKAEG 345

Query: 235 NILKIPNITKTDRGTY 250
                     +D G+ 
Sbjct: 346 QRWLSALRHHSD-GSV 360

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 29/173 (16%), Positives = 51/173 (29%), Gaps = 19/173 (10%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSA-----ALSTGGSIYRGNILKIPNITKTDRGTYYC 252
           G+   L     G      + +    A          G         +P +     GTY  
Sbjct: 212 GKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLA 271

Query: 253 VAQNGVGRGMKRNIAVEVEFAPVITINRPR--QGQALQYDAILECHVEAYPPPAIV---W 307
                  +G +  + + V   P +++      +    +    L C V  + P   +   W
Sbjct: 272 TIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW 330

Query: 308 IKDG-----VQIMNNQHYSVSHFATSDE-FSDTS-LRVITIERRQFGQ-YACK 352
              G      Q    Q +  +    SD   S +  L+   +   Q G  YAC+
Sbjct: 331 ELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACR 383

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 22/199 (11%)

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTISWRRDN----SAALSTGG 229
           ++  P +         ++    +  + C         P   ISW  +N    +A   T  
Sbjct: 235 LLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR 294

Query: 230 SIYRGN-----ILKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVE--FAPVITINRP 281
             Y         L I +        + C V    +   ++R I+       AP + +  P
Sbjct: 295 EDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPP 354

Query: 282 RQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTS-LR 337
            + +  +    L C V  + P    + W  +G   +N ++   V     S  +   S LR
Sbjct: 355 PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS--YFMYSKLR 412

Query: 338 VITIERRQFGQYACKAANK 356
           V      +   Y+C   ++
Sbjct: 413 VEKKNWVERNSYSCSVVHE 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 30/244 (12%), Positives = 69/244 (28%), Gaps = 52/244 (21%)

Query: 5   SPFDFVNRFQNTSTPWDPSTQ------KPIRFFIHEVTGEKVTSVILLFKM--------- 49
           SP   +   Q      DP+          I+  IH +  E     +L  K          
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLL 251

Query: 50  SVAGPSIIVALSF----LI-----SLASSQRTPTISYISQEQIKDI---AQTADL--KCS 95
           +V       A +     L+      +       T ++IS +         +   L  K  
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 96  VQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD-SRF----QLTTDPETSTYILSIKE 150
                D P             P  +S+    I    + +     +  D  T+    S+  
Sbjct: 312 DCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 151 IQETDA-GIYKCEVIISLNNKVSAEV------ELIVRRPPIISDN-STRSVIV--SEGQT 200
           ++  +   ++    +   +  +   +      ++I     ++ +     S++    +  T
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 201 VYLY 204
           + + 
Sbjct: 426 ISIP 429

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1 Length = 127

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 88  QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPETS 142
           QT D+KC  +++        W  +   +  + L  +   S   H     R  L    +  
Sbjct: 20  QTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHG 79

Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKV--SAEVELIV 179
              + +  +Q  D+G+Y+C +             + L+V
Sbjct: 80  LLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 21/110 (19%)

Query: 184 IISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAAL---------STGGSIYR 233
           I +  S   +    G  V L  + +       I+W    +  +         +   S ++
Sbjct: 4   IRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFK 63

Query: 234 GNI--------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
           G +        L I N+ K D+GTYY          +K  + V   F PV
Sbjct: 64  GRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITLEV---FDPV 110

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 92  LKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQ--LTTDPETSTYILSI 148
           LK        Y  I W+     K +E    + + +  I +S F+  +  +   +   L I
Sbjct: 23  LKIHKDPLGPYRRITWLHTKNQKILE---YNYNSTKTIFESEFKGRVYLEE--NNGALHI 77

Query: 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
             +++ D G Y     +    +   ++ L V  P
Sbjct: 78  SNVRKEDKGTYYMR--VLRETENELKITLEVFDP 109

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... Length = 238

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 39/213 (18%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI------- 236
           R+ +   G  V L C         + W R+D    L         GS  +G+I       
Sbjct: 7   RNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 65

Query: 237 --------LKIPNITKTDRGTYYCVAQN----------GVGRGMKRNIAVEVEFAPVITI 278
                   L +   T +    Y+C +            G G  +     +     P +++
Sbjct: 66  RPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSL 125

Query: 279 NRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMN-NQHYSVSHFATSDEFSDT 334
             P + +      A L C    + P  +   W  +G ++ +       ++  ++  +  +
Sbjct: 126 FEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLS 185

Query: 335 S-LRVITIERRQFGQ-YACKAANKYGSAQKEIE 365
           S LRV           + C+      S + +  
Sbjct: 186 SRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 218

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 88  QTADLKCSVQYADD--YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
            +  L+C +         V W + D     + L I  +         F+    P      
Sbjct: 19  GSIILQCHLSSTTAQVTQVNWEQQD-----QLLAICNADLGWHISPSFKDRVAPGPG-LG 72

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
           L+++ +   D G Y C      +   +  + L V    +    +
Sbjct: 73  LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 189 STRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAAL----STGGSI---YRGNI--- 236
           +T ++   +G ++ L C+ +   A    ++W + +          G  I   ++  +   
Sbjct: 9   TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68

Query: 237 ----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
               L + ++T  D G Y+C+            I +EV  + V 
Sbjct: 69  PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 3/138 (2%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
            + +  CS   ++ Y + W + +TAK  E L +           R   T + +     L 
Sbjct: 16  DSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLY 75

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
           IK  Q  D+  Y C               L V       D +   +  S+       C  
Sbjct: 76  IKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDK-SVCLF 134

Query: 208 NGFP--APTISWRRDNSA 223
             F         +  ++ 
Sbjct: 135 TDFDSQTNVSQSKDSDAY 152

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 9/104 (8%)

Query: 88  QTADLKCSVQ-----YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
            +  L C +Q           + W +   +  M     +  G       R +       +
Sbjct: 16  DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQ-GPSYSESKRLEFVAARLGA 74

Query: 143 TYI---LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
                 L +  ++  D G Y C  +       S ++ L V   P
Sbjct: 75  ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 30/104 (28%)

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN----GFPAPTISWRRDNSA-------- 223
            L V +PP         +   EG + +L C  N         +++W RD           
Sbjct: 8   ALWVSQPP--------EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNG 59

Query: 224 ---------ALSTGGSIYRGNI-LKIPNITKTDRGTYYCVAQNG 257
                     L++   ++     L I ++   D   Y C  +  
Sbjct: 60  TPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 7/127 (5%)

Query: 137 TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
             P  +  +  +  +QE       C      + + +A+  L V   P   + +       
Sbjct: 43  LLPGNNRKVYELSNVQED--SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99

Query: 197 EGQTVYLYCYA-NGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYY-C 252
            G+ + L C    G P    T+   R                +     + +   G  + C
Sbjct: 100 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSC 159

Query: 253 VAQNGVG 259
             +  + 
Sbjct: 160 RTELDLR 166

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKT-DRGTYYCV 253
           G TV L C     P   I W+ ++                + L +   ++    G Y C 
Sbjct: 21  GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78

Query: 254 AQNGVG 259
            +    
Sbjct: 79  PRGSKP 84

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 88  QTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSG--SLIIHDSRFQLTTDPE 140
           +TADL C    +      +  V W   +       L     G        S++   T  +
Sbjct: 10  ETADLPCQFANSQNQSLSELVVFWQDQEN----LVLNEVYLGKEKFDSVHSKYMGRTSFD 65

Query: 141 TSTYILSIKEIQETDAGIYKCEVI----ISLNNKVSAEVELIVR 180
           + ++ L +  +Q  D G+Y+C +       +        EL V 
Sbjct: 66  SDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 88  QTADLKCSVQY----ADDYPVIWMKMDTA-KKMEPLPISMSGSLIIHDS------RFQLT 136
           +TA L C             + W+      +K++ + I  SG  I  D       R   T
Sbjct: 21  ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT 80

Query: 137 TDPETSTYI-LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           ++   S    +++  +Q +D G Y+C+V  +     + ++ L+V
Sbjct: 81  SNDLKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKIHLVV 123

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 43/328 (13%), Positives = 76/328 (23%), Gaps = 62/328 (18%)

Query: 67  ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISM 122
           ++    P++  ++            L C V+    +P    V W     +  +   P  +
Sbjct: 114 SAKTTPPSVYPLAPGSAAQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVL 171

Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI-ISLNNKVSAEVELIVRR 181
              L    S   +T                   +    C V   + + KV  ++      
Sbjct: 172 QSDLYTLSS--SVTVPSSPR------------PSETVTCNVAHPASSTKVDKKIVPRDCG 217

Query: 182 PPIISDNSTRSVIVS-----------EGQTVYLYCYANGF----PAPTISWRRDN----- 221
                        V               T  + C         P    SW  DN     
Sbjct: 218 CKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHT 277

Query: 222 ----SAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAP 274
                       +    + L I +    +   + C   +           +       AP
Sbjct: 278 AQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAP 337

Query: 275 VITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMN------NQHYSVSHFA 326
            +    P + Q  +    L C +  + P    + W  DG    N            S+F 
Sbjct: 338 QVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFV 397

Query: 327 TSDEFSDTSLRVITIERRQFGQYACKAA 354
            S       L V          + C   
Sbjct: 398 YS------KLNVQKSNWEAGNTFTCSVL 419

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
           + W K     K   L           +S     +     T  L I ++   D G Y+ EV
Sbjct: 47  IKWFK----GKWLELGSKSGARFSFKES---HNSASNVYTVELHIGKVVLGDRGYYRLEV 99

Query: 164 IISLNNKVSAEVELIVRRP 182
             + +   S    + V  P
Sbjct: 100 -KAKDTCDSCGFNIDVEAP 117

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 16/85 (18%)

Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALST-------------GGSIYRG 234
            SV V  G+   +    NG      PTI W +     L +               S    
Sbjct: 20  DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79

Query: 235 NILKIPNITKTDRGTYYCVAQNGVG 259
             L I  +   DRG Y    +    
Sbjct: 80  VELHIGKVVLGDRGYYRLEVKAKDT 104

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} Length = 253

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 42/217 (19%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRG--------- 234
           R  +V  GQ V L C       P +SW ++D    L       + G              
Sbjct: 9   RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA 68

Query: 235 -----NILKIPNITKTDRGTYYCVAQNGV---------GRGMKRNIAVEVE--FAPVITI 278
                  L++     +   T YC +             G G K  +  +++  F P + +
Sbjct: 69  TRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAV 128

Query: 279 NRPRQGQALQYD-AILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDT- 334
             P + +      A L C    + P    + W  +G ++ +               +D+ 
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSR 188

Query: 335 -----SLRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
                 LRV     +     + C+      S   E  
Sbjct: 189 YALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 225

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} Length = 279

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 45/220 (20%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL-------STGGSIYRGNI------ 236
             VI   G +V + C +  F A T+ W R+    +L           + Y   +      
Sbjct: 32  SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 91

Query: 237 ----------LKIPNITKTDRGTYYCVAQN-----------GVGRGMKRNIAVEVEFAPV 275
                     L + +    D   Y C A++           G G  +     ++  F P 
Sbjct: 92  INHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPE 151

Query: 276 ITINRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEFS 332
           + +  P + +      A L C    + P  +   W  +G ++ +               +
Sbjct: 152 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALN 211

Query: 333 DTS------LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
           D+       LRV     +     + C+      S   E  
Sbjct: 212 DSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 251

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 36/292 (12%), Positives = 67/292 (22%), Gaps = 45/292 (15%)

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKC--EVIISLNNKV-----SAEVELIVRRPP 183
            R   T D   +T  + +  ++  D  +Y C  +      ++         V +    P 
Sbjct: 67  GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPT 126

Query: 184 IISDNSTRSVIVSEGQTVYLYCYANGF-PAP--TISWRRDNS--------AALSTGGSIY 232
                            V + C   GF P    +++W              +    G +Y
Sbjct: 127 SPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLY 186

Query: 233 RG-NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ------ 285
              + L +P        +  C  ++         +   V   P                 
Sbjct: 187 TTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCH 246

Query: 286 -------------ALQYDAILECHVEAYPPP---AIVWIKDGVQIMNNQHYSVSHFATSD 329
                         L  +A L C +            W     +                
Sbjct: 247 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERD---LCG 303

Query: 330 EFSDTSLRVITIERRQFGQ-YACKAANKYGSAQKEIELFDRETQTGDETFPI 380
            +S +S+     E    G+ + C AA           L         E   +
Sbjct: 304 CYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLL 355

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTISWRRDNSA--ALSTGGSI 231
           ++  P +          +   +T  + C         P    +W  D        T    
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE 303

Query: 232 YRGN-------ILKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVE--FAPVITINRP 281
            + N       +L + +    +   Y C V+   +   +++ I+        P +    P
Sbjct: 304 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP 363

Query: 282 RQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMN------NQHYSVSHFATSDEFSD 333
            + +  +    L C V+ + P   A+ W  +G    N            S F  S     
Sbjct: 364 SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS----- 418

Query: 334 TSLRVITIERRQFGQYACKAA 354
             L V     +Q   ++C   
Sbjct: 419 -KLTVDKSRWQQGNVFSCSVM 438

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 18/111 (16%), Positives = 27/111 (24%), Gaps = 19/111 (17%)

Query: 88  QTADLKCSVQ----YADDYPVIWMKMDTAKKMEPLPI--SMSGSLIIHDSRFQ------- 134
            T +L C +           V W + D     + +       G                 
Sbjct: 18  GTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVS 77

Query: 135 ------LTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
                   T+ E     L++  +   D G Y CE        V     L V
Sbjct: 78  AKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1 Length = 134

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 88  QTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLI-IHDSRFQLTTDPETSTYI 145
             A   CS+  +++D  + W ++  + + E      +G    + D+RFQ+   P    + 
Sbjct: 25  ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFH 84

Query: 146 LSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPI 184
           ++I + +  D+GIY C  I        + S   EL+V    +
Sbjct: 85  MNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERIL 126

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A* Length = 132

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 92  LKCSVQYADDYP-------VIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPET 141
           ++CS  Y  D           W +       +    + + +  + +    RF L  DP+T
Sbjct: 26  VRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT 85

Query: 142 STYILSIKEIQETDAGIYKCEV 163
               LSI++ + +DAG Y   +
Sbjct: 86  KNCTLSIRDARMSDAGRYFFRM 107

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 34/204 (16%), Positives = 73/204 (35%), Gaps = 31/204 (15%)

Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA----LSTGGSIYRGNI----------- 236
           S   + GQ V + C      + T++W +         L    ++    +           
Sbjct: 9   SASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGT 68

Query: 237 ---LKIPNITKTDRGTYYCVAQNG------VGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
              L I  +   D   YYC + N        G G K  +  + +  P +T+  P   +  
Sbjct: 69  SASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQ 128

Query: 288 QYDAILECHVEAY-PPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
              A L C +  + P    V W  DG  +      +     ++++++ +S   +++   Q
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASS--YLSLTPEQ 186

Query: 346 FGQ---YACKAANKYGSAQKEIEL 366
           +     Y+C+  ++  + +K +  
Sbjct: 187 WKSHRSYSCQVTHEGSTVEKTVAP 210

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1 Length = 119

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV--SAEVELIV 179
            R  L    +     + +  +Q  D+G+Y+C +             + L+V
Sbjct: 63  GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A Length = 200

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 3/138 (2%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
               + C+        + W    + +  + L    + +       F+ T D  T+++ L 
Sbjct: 16  DFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQ 75

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
              +QE D+ +Y C        +     +L V  P I + +     +     +    C  
Sbjct: 76  KTSVQEIDSAVYYCAANSGTYQRFGTGTKLQV-VPNIQNPDPAVYQLRDSKSSDKSVCLF 134

Query: 208 NGFP--APTISWRRDNSA 223
             F         +  +  
Sbjct: 135 TDFDSQTNVSQSKDSDVY 152

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 40.9 bits (94), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--ALSTGGSIYRGNILKIPNITKTDRG 248
           R      G T  L C         + W+  N    A S    +     L I N+++ D G
Sbjct: 541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 599

Query: 249 TYYCVAQ-NGVGRGMKRNIA---VEVEFAPVITI 278
            Y C+++     + + + +A   +EV+  P   +
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVV 633

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ... Length = 211

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 30/200 (15%)

Query: 192 SVIVSEGQTVYLYCYANG---------FP--APTISWRRDNSAALSTG------GSIYRG 234
           S   S GQ++ + C                 AP +     N     +G      GS   G
Sbjct: 9   SASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNK--RPSGVPDRFSGSK-SG 65

Query: 235 N--ILKIPNITKTDRGTYYCVAQNG-----VGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
           N   L +  +   D   YYC +  G      G G K  +  + + AP +T+  P   +  
Sbjct: 66  NTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQ 125

Query: 288 QYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERR 344
              A L C +  + P    + W  D   +      +     ++++++ +S L +   + +
Sbjct: 126 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWK 185

Query: 345 QFGQYACKAANKYGSAQKEI 364
               Y+C+  ++  + +K +
Sbjct: 186 SHRSYSCQVTHEGSTVEKTV 205

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E Length = 246

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 43/218 (19%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL-------STGGSIYRGNI------ 236
             VI   G +V + C +  F A T+ W R+    +L           + Y   +      
Sbjct: 9   SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 68

Query: 237 ----------LKIPNITKTDRGTYYCVAQN---------GVGRGMKRNIAVEVEFAPVIT 277
                     L + +    D   Y C A+          G G  +     ++  F P + 
Sbjct: 69  INHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVA 128

Query: 278 INRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEFSDT 334
           +  P + +      A L C    + P  +   W  +G ++ +               +D+
Sbjct: 129 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 188

Query: 335 ------SLRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
                  LRV     +     + C+      S   E  
Sbjct: 189 RYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 226

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A Length = 240

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 37/211 (17%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI------- 236
           R +I  +G    L C         + W ++     L             +G +       
Sbjct: 10  RHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQ 68

Query: 237 --------LKIPNITKTDRGTYYCVAQNG--------VGRGMKRNIAVEVEFAPVITINR 280
                   + +  +   D   Y+C +            G  +     +     P +++  
Sbjct: 69  QFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFE 128

Query: 281 PRQGQ-ALQYDAILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSD-EFSDTS- 335
           P + + A +  A L C    + P    + W  +G ++ +        +  S+  +S +S 
Sbjct: 129 PSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSR 188

Query: 336 LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
           LRV           + C+      S + +  
Sbjct: 189 LRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	100.0
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	100.0
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	100.0
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	100.0
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	100.0
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	100.0
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	100.0
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.98
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.98
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.96
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.96
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.96
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.96
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.95
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.95
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.95
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.95
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.95
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.95
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.95
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.95
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.94
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.94
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.94
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.94
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.94
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.94
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.94
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.94
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.94
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.93
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.93
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.93
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.93
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.93
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.93
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.93
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.93
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.93
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.93
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.93
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.92
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.92
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.92
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.92
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.92
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.91
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.91
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.91
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.91
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.91
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.91
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.91
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.91
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.91
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.91
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.91
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.91
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.9
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.9
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.9
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.9
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.9
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.9
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.9
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.9
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.9
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.9
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.9
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.89
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.89
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.89
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.89
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.89
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.89
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.89
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.89
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.89
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.89
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.89
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.89
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.89
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.89
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.89
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.89
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.89
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.88
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.88
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.88
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.88
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.88
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.88
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.88
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.88
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.88
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.88
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.88
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.88
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.88
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.88
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.88
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.88
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.88
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.88
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.88
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.88
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.88
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.87
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.87
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.87
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.87
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.87
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.87
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.87
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.87
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.87
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.87
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.87
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.87
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.87
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.87
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.86
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.86
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.86
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.86
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.86
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.86
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.86
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.86
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.86
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.86
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.86
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.86
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.86
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.85
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.85
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.85
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.85
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.85
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.85
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.85
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.85
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.85
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.85
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.85
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.85
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.85
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.85
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.85
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.84
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.84
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.84
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.84
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.84
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.84
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.84
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.84
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.84
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.84
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.84
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.84
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.84
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.84
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.84
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.84
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.84
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.84
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.83
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.83
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.83
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.83
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.83
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.83
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.83
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.83
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.82
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.82
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.82
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.82
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.82
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.82
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.82
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.82
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.82
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.82
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.82
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.82
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.82
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.82
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.82
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.82
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.82
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.82
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.82
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.82
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.81
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.81
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.81
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.81
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.81
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.81
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.81
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.81
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.8
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.8
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.8
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.8
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.8
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.8
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.8
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.8
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.8
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.8
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.8
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.79
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.79
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.79
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.79
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.79
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.79
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.78
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.78
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.78
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.78
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.78
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.78
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.78
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.78
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.78
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.78
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.78
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.78
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.77
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.77
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.77
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.77
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.77
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.77
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.76
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.76
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.76
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.76
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.76
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.76
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.76
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.76
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.75
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.75
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.75
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.75
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.74
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.74
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.74
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.74
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.74
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.74
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.73
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.73
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.73
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.72
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.72
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.72
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.72
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.72
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.71
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.71
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.7
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.7
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.7
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.7
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.7
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.69
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.69
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.69
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.68
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.68
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.68
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.68
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.68
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.67
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.67
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.67
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.66
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.66
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.65
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.65
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.65
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.65
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.65
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.64
1he7_A	126	High affinity nerve growth factor receptor; transf	99.64
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.64
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.64
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.64
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.64
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.63
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.63
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.63
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.62
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.62
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.62
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.61
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.6
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.6
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.6
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.6
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.6
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.59
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.59
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.59
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.58
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.58
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.58
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.58
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.57
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.57
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.57
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.57
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.55
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.55
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.55
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.55
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.55
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.55
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.54
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.54
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.54
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.53
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.53
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.53
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.51
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.51
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.51
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.51
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.5
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.49
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.49
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.49
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.49
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.49
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.48
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.23
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.48
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.48
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.47
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.47
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.47
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.47
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.46
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.46
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	99.46
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.46
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.46
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.45
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.45
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.45
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.45
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.45
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	99.45
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.45
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.44
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.44
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.44
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.44
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.43
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.43
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	99.43
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.43
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.43
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.43
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.43
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.42
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.42
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.42
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.42
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.42
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.42
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.41
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.41
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	99.41
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.41
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.41
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.4

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.6e-45  Score=339.98  Aligned_cols=345  Identities=19%  Similarity=0.266  Sum_probs=269.1

Q ss_pred             CCCCCcchhccccCCCCCCC--CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652          2 IAPSPFDFVNRFQNTSTPWD--PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS   79 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   79 (384)
                      |.+.+.||+|+..+......  ....+..+|.|.+++.+|+|.|.|.+.+..+.....    ..+.......+|.+...+
T Consensus       129 p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~~~~pp~~~~~p  204 (570)
T 3b43_A          129 EPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS----AKLTLSEHEVPPFFDLKP  204 (570)
T ss_dssp             SSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE----EEEEEECCCCCCEEEECC
T ss_pred             CCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEE----EEEEEcCCCCCCccccCC
Confidence            56789999998765432200  112345789999999999999999998753321110    000111234567777777


Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ....+.+|++++|.|.+.+.|.+.+.|++++...              ..+.++.+..  ......|.|.+++.+|+|.|
T Consensus       205 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y  268 (570)
T 3b43_A          205 VSVDLALGESGTFKCHVTGTAPIKITWAKDNREI--------------RPGGNYKMTL--VENTATLTVLKVTKGDAGQY  268 (570)
T ss_dssp             CCBCCBSBSCEEEEEEEESSSCCEEEEEETTEEC--------------CTTSSEEEEE--ETTEEEEEESSBCGGGCEEE
T ss_pred             ceeEecCCCeEEEEEEEEECCCCEEEEEECCEEC--------------cCCCcEEEEE--ECCEEEEEEcccCcccCEEE
Confidence            7888999999999999999888899999977542              2234444433  23356899999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE----ecc
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGN  235 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~  235 (384)
                      +|.+.|.. +..+..+.|.|..+|.+.........+.+|+.+.|.|.+.|.|.+.+.|++++..+........    ...
T Consensus       269 ~C~a~N~~-g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~  347 (570)
T 3b43_A          269 TCYASNVA-GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA  347 (570)
T ss_dssp             EEEEEETT-EEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEE
T ss_pred             EEEEECCC-CcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEE
Confidence            99998654 4567778888888887654444445578999999999999999999999999987765544322    235


Q ss_pred             EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEec
Q psy16652        236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM  315 (384)
Q Consensus       236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~  315 (384)
                      .|.|.+++.+|+|.|+|.|.|..|.. +....|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus       348 ~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~  426 (570)
T 3b43_A          348 VLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR  426 (570)
T ss_dssp             EEEEESCCGGGCEEEEEEEEBTTBCC-EEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECC
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCEE-EEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECc
Confidence            79999999999999999999998876 67788999999998877777778899999999999999999999999999998


Q ss_pred             CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .+.++.+...     .....|.|.+++.+|+|.|+|.|.|..|+....+.|.|..+|.
T Consensus       427 ~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~  479 (570)
T 3b43_A          427 SGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR  479 (570)
T ss_dssp             SSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCE
T ss_pred             CCCCEEEEEc-----CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCc
Confidence            7777665421     1235799999999999999999999999999999999887654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.3e-43  Score=328.69  Aligned_cols=338  Identities=19%  Similarity=0.275  Sum_probs=259.7

Q ss_pred             CCCCCcchhccccCCCCC-CC-CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652          2 IAPSPFDFVNRFQNTSTP-WD-PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS   79 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~-~~-~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   79 (384)
                      |.+.+.|++|+.++.... +. ....+..+|.|.+++.+|+|.|.|.+.+..+.....       .......+|.+....
T Consensus       225 p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~-------~~l~V~~~p~~~~~~  297 (570)
T 3b43_A          225 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-------AQLGVQEPPRFIKKL  297 (570)
T ss_dssp             SCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEE-------EEECCBCCCEEEECC
T ss_pred             CCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEE-------EEEEeecCCcccccC
Confidence            567899999987664321 00 012345789999999999999999998753321110       001123455555443


Q ss_pred             c-ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         80 Q-EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        80 ~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      . ...+.+|+.+.|.|.+.+.|.+.+.|++++...              ....++.+..  ......|.|.+++.+|+|.
T Consensus       298 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~  361 (570)
T 3b43_A          298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI--------------QESSKFRMSF--VESVAVLEMYNLSVEDSGD  361 (570)
T ss_dssp             CSBCCEESSCEEEEEEEEESSSSCEEEEEETTEEC--------------CCSSSEEEEE--ETTEEEEEEESCCGGGCEE
T ss_pred             CCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEEC--------------CCCCcEEEEE--ECCEEEEEECCCCcccCEE
Confidence            3 345889999999999999999999999987642              2233444433  2345679999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe--c--
Q psy16652        159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR--G--  234 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~--  234 (384)
                      |+|.+.|.. +..+....|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+.........  +  
T Consensus       362 Y~C~a~N~~-g~~~~~~~l~V~~~P~~~~~-~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~  439 (570)
T 3b43_A          362 YTCEAHNAA-GSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL  439 (570)
T ss_dssp             EEEEEEBTT-BCCEEEEEECEECCCEECSC-CCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTE
T ss_pred             EEEEEEeCC-CEEEEEEEEEecCCCeeecC-CCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCE
Confidence            999998655 45666788888888876643 45567889999999999999999999999999877654443221  1  


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEe
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI  314 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~  314 (384)
                      ..|.|.++..+|+|.|+|.|.|..|.. .....|.|..+|.+...+....+.+|+.+.|.|.+.|.|++.+.|++++..+
T Consensus       440 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~  518 (570)
T 3b43_A          440 TSIHILNVDSADIGEYQCKASNDVGSD-TCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI  518 (570)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEEC
T ss_pred             EEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEe
Confidence            479999999999999999999999875 6678899999999988888888999999999999999999999999998665


Q ss_pred             c-CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        315 M-NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       315 ~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      . .++++.+..     .....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       519 ~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e  570 (570)
T 3b43_A          519 VRESDNIWISY-----SENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE  570 (570)
T ss_dssp             CCCTTTEEECC-----CSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             ccCCCeEEEEE-----CCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence            3 344444321     11356899999999999999999999999999999998753

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.8e-43  Score=314.62  Aligned_cols=341  Identities=20%  Similarity=0.282  Sum_probs=259.4

Q ss_pred             CCCCCcchhccccCCCCCCC-CCCCCceEEEEEee-----ecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652          2 IAPSPFDFVNRFQNTSTPWD-PSTQKPIRFFIHEV-----TGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI   75 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   75 (384)
                      |.+.|.|++|+..+...... .....+.+|.|.++     +.+|+|.|.|.+.....+.....     ........+|.+
T Consensus        50 p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~-----~~~l~v~~p~~~  124 (403)
T 3laf_A           50 GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR-----TAKVMVAGPLRF  124 (403)
T ss_dssp             CCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECC-----CEEEEECCCCEE
T ss_pred             CCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEE-----EEEEEecCCCcc
Confidence            55679999998766533211 12235667889888     78899999999975321111000     000112235667


Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      ...+....+.+|+++.|.|.+.+.+.+.+.|++++......           ....++....     ...|.|.+++.+|
T Consensus       125 ~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----------~~~~~~~~~~-----~~~L~i~~~~~~d  188 (403)
T 3laf_A          125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI-----------PGDSRVVVLP-----SGALQISRLQPGD  188 (403)
T ss_dssp             CSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCC-----------TTCCSEEECT-----TSCEEECSCCGGG
T ss_pred             ccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEecccc-----------CCceEEEEcC-----CceEEEccccccc
Confidence            67777788999999999999988888899999987653110           1112222211     1269999999999


Q ss_pred             CeeEEEEEEEccCcceeeeEEEEEecCCccc-----cCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce
Q psy16652        156 AGIYKCEVIISLNNKVSAEVELIVRRPPIIS-----DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS  230 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~  230 (384)
                      +|.|+|.+.+..+......+.+.|...|...     ...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......
T Consensus       189 ~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~  268 (403)
T 3laf_A          189 SGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK  268 (403)
T ss_dssp             CEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSS
T ss_pred             CEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCce
Confidence            9999999987665556667778777655322     12344567889999999999999999999999998776543332


Q ss_pred             --eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652        231 --IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI  308 (384)
Q Consensus       231 --~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~  308 (384)
                        ...+..|.|.++..+|+|.|+|.+.|..+.. +..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus       269 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~  347 (403)
T 3laf_A          269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM  347 (403)
T ss_dssp             EEEETTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEE
T ss_pred             EEECCccEEEEeCCCHHHCEEEEEEEEcCCCce-EEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEE
Confidence              2345689999999999999999999987764 7788999999999888888888899999999999999999999999


Q ss_pred             ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      ++|..+....+....        ....|.|..++.+|+|.|+|.|.|..|....++.|.|.++|
T Consensus       348 ~~g~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          348 KNGDVVIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             ETTEECCCSSSEEEE--------TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             ECCEECCCCCcEEEe--------cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            999998777665543        35789999999999999999999999999999999998764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.8e-43  Score=310.86  Aligned_cols=336  Identities=21%  Similarity=0.274  Sum_probs=238.9

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEee-ecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEV-TGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      |.+.+.|++|+.++......+....+++|.|.++ +.+|+|.|.|.+.+..+......     ..+.....++.......
T Consensus        36 P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~-----~~l~v~~~~~~~~~~~~  110 (384)
T 3kld_A           36 PKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE-----AKLQFAYLENFKTRTRS  110 (384)
T ss_dssp             SCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCC-----EEEEEEEECCCSCCCCC
T ss_pred             CCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecc-----eEEEEecccccccCCCC
Confidence            6788999999877754432333344567888876 88999999999988643211000     00000001111112234


Q ss_pred             ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ...+.+|+.+.|.|... +.+.+.+.|++++....              .+.+..+..    ....|.|.+++.+|+|.|
T Consensus       111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~--------------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y  172 (384)
T 3kld_A          111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--------------QDNRRFVSQ----ETGNLYIAKVEKSDVGNY  172 (384)
T ss_dssp             CEEEEETCCEEECCCCCSEESCEEEEEEETTEECC--------------CSSSEEECT----TTCCEEESSCCGGGCEEE
T ss_pred             ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE--------------eeccEEEEc----CCCcEEEeecCHHHCceE
Confidence            45688999999999764 34567899999764311              112211111    123599999999999999


Q ss_pred             EEEEEEccCcce--eeeEEEEEe-------cCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC-cccccCc
Q psy16652        160 KCEVIISLNNKV--SAEVELIVR-------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS-AALSTGG  229 (384)
Q Consensus       160 ~C~~~~~~~~~~--~~~~~l~v~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~~~~~  229 (384)
                      +|.+.|..+...  .....+.+.       .+|.+....+....+.+|+.+.|.|.+.|.|.|.+.|++++. .+.....
T Consensus       173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~  252 (384)
T 3kld_A          173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR  252 (384)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE
T ss_pred             EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce
Confidence            999997654321  111222221       122222223455678899999999999999999999999654 3332222


Q ss_pred             eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE
Q psy16652        230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK  309 (384)
Q Consensus       230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~  309 (384)
                      ....+..|.|.+++.+|+|.|+|.|.|..|.. .....|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++
T Consensus       253 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k  331 (384)
T 3kld_A          253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK  331 (384)
T ss_dssp             ECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred             ecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEE
Confidence            22335689999999999999999999998875 66778889999988877777888999999999999999999999999


Q ss_pred             CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +|..+....++.+         ...+|.|..++.+|+|.|+|.|.|..|...++..|.|..
T Consensus       332 ~g~~l~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          332 NGDPLLTRDRIQI---------EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             TTEECCCBTTEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCEECCCCccEEE---------eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            9999977666553         256899999999999999999999999999999998864

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1e-42  Score=307.53  Aligned_cols=334  Identities=21%  Similarity=0.224  Sum_probs=248.3

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeec-ceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe-eeeC
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTG-EKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI-SYIS   79 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~   79 (384)
                      |.+.|.|++|+..+......+....+.+|.|.+++. +|+|.|.|.+.+..+......     ..+... ..|.+ ...+
T Consensus        35 p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~-----~~l~v~-~~~~~~~~~~  108 (382)
T 1cs6_A           35 PPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSRE-----ASLRFG-FLQEFSAEER  108 (382)
T ss_dssp             SCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCC-----EEEEEE-EECCCCSSCC
T ss_pred             CCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecc-----eEEEee-ccccccccCC
Confidence            567899999987766544334444567899999997 999999999987533211000     000000 11111 1224


Q ss_pred             cceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         80 QEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ....+.+|++++|.|... +.+.+.+.|++++....     .       ..+.+.....    ....|.|.+++.+|+|.
T Consensus       109 ~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~-----~-------~~~~~~~~~~----~~~~L~i~~~~~~d~G~  172 (382)
T 1cs6_A          109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-----I-------PADGRRFVSQ----TTGNLYIAKTEASDLGN  172 (382)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB-----C-------CCCSSEEECT----TTCCEEESSCCGGGCEE
T ss_pred             CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc-----c-------ccCceEEEec----CceEEEEEeeCcccCee
Confidence            456689999999999863 45678999999876421     0       1112222211    12369999999999999


Q ss_pred             EEEEEEEccCc----ceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC
Q psy16652        159 YKCEVIISLNN----KVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG  228 (384)
Q Consensus       159 Y~C~~~~~~~~----~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~  228 (384)
                      |+|.+.+..+.    ..+..+.|.+..      +|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  
T Consensus       173 Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--  250 (382)
T 1cs6_A          173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--  250 (382)
T ss_dssp             EEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--
T ss_pred             EEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc--
Confidence            99999876532    113334555432      233333334567789999999999999999999999998876543  


Q ss_pred             ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652        229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI  308 (384)
Q Consensus       229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~  308 (384)
                      ........|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus       251 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~  329 (382)
T 1cs6_A          251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL  329 (382)
T ss_dssp             CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             EEecCCcEEEEccCChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence            223356689999999999999999999988774 7788999999999888777788899999999999999999999999


Q ss_pred             ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      ++|..+....++.+         ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       330 ~~g~~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          330 RDGQPLASQNRIEV---------SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             ETTEECCCCSSEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCEECCCCceEEE---------ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            99999987766554         25689999999999999999999999999999999886

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-42  Score=306.20  Aligned_cols=333  Identities=14%  Similarity=0.173  Sum_probs=220.2

Q ss_pred             CCCCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652          1 FIAPSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS   79 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   79 (384)
                      +|.+.|.|++++....... .+.......+|.|.+++.+|+|.|+|.+.+..+.....+      .+ ....+|.+. ..
T Consensus        75 ~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~------~l-~V~~~p~~~-~~  146 (423)
T 3qs7_E           75 PGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF------TV-SIRNTLLYT-LR  146 (423)
T ss_dssp             CSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE------EE-EEC-----C-EE
T ss_pred             CCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE------EE-EEecCcccc-cc
Confidence            4778899999875543322 121223346899999999999999999987633221100      00 011233332 12


Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      .+..+..|+.+.|.|.+.+.|.+.+.|++++......           .......+...    .  ..   ++..|+|.|
T Consensus       147 ~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~-----------~~~~~~~~~~~----~--~~---l~~~d~G~Y  206 (423)
T 3qs7_E          147 RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESC-----------KEESPAVVKKE----E--KV---LHELFGTDI  206 (423)
T ss_dssp             EEEEEECSSSSCEEEEEEESSCCEEEEEEC------------------------CEEEC----C--SE---ECCCCSSCE
T ss_pred             CCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccc-----------ccccccccccc----c--eE---EecccCeEE
Confidence            3334567899999999999999999999977531100           00000000000    0  01   157899999


Q ss_pred             EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCc---------
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGG---------  229 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------  229 (384)
                      +|.|.|..+......+.|.|..+|...   +....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.....         
T Consensus       207 ~C~A~N~~G~~~~~~~~l~V~~~p~~~---~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~  283 (423)
T 3qs7_E          207 RCCARNELGRECTRLFTIDLNQTPQTT---LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN  283 (423)
T ss_dssp             EEEEECSSCEEEEECEEEESSSCCCSS---TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETT
T ss_pred             EEEEEcCCCCcceeeEEEEEecCCccC---CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCC
Confidence            999997766555555777777666543   44677899999999999988 66789999999987644321         


Q ss_pred             -eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCeEE
Q psy16652        230 -SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPAIV  306 (384)
Q Consensus       230 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~  306 (384)
                       .......|.|.+++.+|+|.|+|.|.|.    .+..+.|.|..+|.+...+.  ...+.+|+.+.|.|.+.|+|.|.+.
T Consensus       284 ~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~  359 (423)
T 3qs7_E          284 RTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT  359 (423)
T ss_dssp             TEEEEEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred             ceeEEEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEE
Confidence             1223457999999999999999999987    47788899999998776553  4567889999999999999999999


Q ss_pred             EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652        307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET  377 (384)
Q Consensus       307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  377 (384)
                      |+++|..+..+.+...         ....+.+.....+|+|.|+|.|.|..|+...++.|.|...|..|..
T Consensus       360 W~k~g~~l~~~~~~~~---------~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~  421 (423)
T 3qs7_E          360 WTFSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH  421 (423)
T ss_dssp             EEETTEEEECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred             EEECCEECCCcccccc---------CCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence            9999999965532100         1112223556678999999999999999999999999999877653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.8e-40  Score=280.97  Aligned_cols=278  Identities=22%  Similarity=0.361  Sum_probs=231.0

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++...              ....++.+..  ......|.|.
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~   66 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI--------------RPGGNYKMTL--VENTATLTVL   66 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEEC--------------CSSSSEEEEE--ETTEEEEEES
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEEC--------------cCCCcEEEEE--cCCEEEEEEe
Confidence            46888999899999999999999999998888899999977542              2233444443  2345789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      +++.+|+|.|+|.+.+.. +..+..+.|.|..+|.+.........+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        67 ~v~~~d~G~Y~C~~~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~  145 (284)
T 2rik_A           67 KVTKGDAGQYTCYASNVA-GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK  145 (284)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSS
T ss_pred             cCCcccCEEEEEEEEECC-ceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCc
Confidence            999999999999998654 4467788899988887665556667789999999999999999999999999987765543


Q ss_pred             eeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652        230 SIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI  305 (384)
Q Consensus       230 ~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  305 (384)
                      ...    ....|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+
T Consensus       146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v  224 (284)
T 2rik_A          146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV  224 (284)
T ss_dssp             EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEE
T ss_pred             EEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce-eEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEE
Confidence            322    23579999999999999999999988865 7788999999998877777777889999999999999999999


Q ss_pred             EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|++++..+....++.+...     .....|.|.+++.+|.|.|+|.|.|..|+...++.|.|++
T Consensus       225 ~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          225 SWHKDKRELRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             EEEETTEEECBTTTEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             EEEECCEECcCCCCEEEEEc-----CCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence            99999999988777665431     1246799999999999999999999999999999998864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.7e-41  Score=300.40  Aligned_cols=331  Identities=19%  Similarity=0.273  Sum_probs=244.4

Q ss_pred             CCCCCcchh-ccccCCCCCCCCCCCCceEEEEEeeecce------EEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCC
Q psy16652          2 IAPSPFDFV-NRFQNTSTPWDPSTQKPIRFFIHEVTGEK------VTSVILLFKMSVAGPSIIVALSFLISLASSQRTPT   74 (384)
Q Consensus         2 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   74 (384)
                      |.+.|.|++ |+..+......+....+++|.|.+++.+|      +|.|.|.+.+..+.....     .+. .....+|.
T Consensus        32 p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~-----~~~-v~v~~~p~  105 (388)
T 2v5m_A           32 PMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR-----DVH-VRAVVAQY  105 (388)
T ss_dssp             SCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECC-----CEE-EEEECCCC
T ss_pred             CCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEec-----ceE-EEEccccc
Confidence            678899999 65544432212223456789999999997      999999998764321100     000 01123455


Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +...+....+.+|++++|.|.+.+.+   .+.+.|++++......       .  .....++.+..+     ..|.|.++
T Consensus       106 ~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~-------~--~~~~~~~~~~~~-----~~L~i~~v  171 (388)
T 2v5m_A          106 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP-------G--AEYDGKYLVLPS-----GELHIREV  171 (388)
T ss_dssp             CCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECS-------S--SCBTTTEEECTT-----SCEEESSC
T ss_pred             cccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCccccc-------c--cCCCCcEEEccC-----CcEEEecC
Confidence            55566777899999999999997754   2789999987642100       0  112344444321     25999999


Q ss_pred             CCCCC-eeEEEEEEEccCccee---eeEEEEEecC-----CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652        152 QETDA-GIYKCEVIISLNNKVS---AEVELIVRRP-----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       152 ~~~d~-G~Y~C~~~~~~~~~~~---~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      +.+|+ |.|+|.+.+..++...   ....|.|..+     |...........+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       172 ~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~  251 (388)
T 2v5m_A          172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE  251 (388)
T ss_dssp             CGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECT
T ss_pred             CccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCC
Confidence            99999 9999999876544322   1234555544     2222222344568899999999999999999999999764


Q ss_pred             ccc------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEE
Q psy16652        223 AAL------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECH  296 (384)
Q Consensus       223 ~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~  296 (384)
                      ...      ........+..|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~  330 (388)
T 2v5m_A          252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ  330 (388)
T ss_dssp             TSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEE
T ss_pred             CCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCce-eEEEEEEEeCCCccccCCCcEEecCCCCEEEEEE
Confidence            432      122233456789999999999999999999998875 7788899999998888777788899999999999


Q ss_pred             EeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       297 ~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +.|.|.|.+.|+++|..+...               ...|.|.+++.+|+|.|+|.|.|..|+...++.|.|
T Consensus       331 ~~g~p~p~i~W~~~g~~i~~~---------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          331 YTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEECCCEEEEEETTEECSCC---------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eccccCCeEEEEECCEECccC---------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            999999999999999987532               457999999999999999999999999999999886

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=8.9e-42  Score=311.10  Aligned_cols=326  Identities=13%  Similarity=0.174  Sum_probs=229.3

Q ss_pred             CCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          3 APSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         3 ~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      .++|.|++|++.....+ ++.......+|.|.+++.+|+|.|+|.+.+........      ..+...  +..+.....+
T Consensus        77 ~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~------~~v~v~--~~~~~~~~~p  148 (527)
T 3qs9_E           77 NISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL------FTVSIR--NTLLYTLRRP  148 (527)
T ss_dssp             SCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE------EEEEEC-------CEEEE
T ss_pred             ceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEE------EEEEEC--CceeeccCCC
Confidence            47899999988755444 33223444679999999999999999998753321110      000001  1111122233


Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      .....|+.+.|.|.+.+.|.+.+.|++++....                 ++.. .  ...........++..|+|.|+|
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~-----------------~~~~-~--~~~~~~~~~~~~~~~d~G~Y~C  208 (527)
T 3qs9_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGE-----------------SCKE-E--SPAVVKKEEKVLHELFGTDIRC  208 (527)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC---------------------------------CEEECCSEECCCCSSCEEE
T ss_pred             cEEecCCceEEEEEEceecCCeEEEEECCCCCc-----------------cccc-c--CCcEEEEeeeeccccCCEEEEE
Confidence            345678889999999999999999999765310                 0000 0  0111122334456899999999


Q ss_pred             EEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCce----------
Q psy16652        162 EVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGS----------  230 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~----------  230 (384)
                      .+.|..+......+.|.|..+|..   .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+......          
T Consensus       209 ~A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~  285 (527)
T 3qs9_E          209 CARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT  285 (527)
T ss_dssp             EEECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTE
T ss_pred             EEEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcc
Confidence            999776655555577888766655   25567889999999999996 8899999999999876543211          


Q ss_pred             eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652        231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPAIVWI  308 (384)
Q Consensus       231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~  308 (384)
                      ......|.|.+++.+|+|.|+|.|.|.    .+..+.|.|..+|.+...+.  ...+.+|+.+.|.|.+.|+|.|.+.|+
T Consensus       286 ~~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~  361 (527)
T 3qs9_E          286 MIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT  361 (527)
T ss_dssp             EEEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred             eeeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEE
Confidence            223456999999999999999999987    46778888988888765443  356778999999999999999999999


Q ss_pred             ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      ++|..+....+...         ....|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       362 k~g~~l~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P  416 (527)
T 3qs9_E          362 FSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP  416 (527)
T ss_dssp             ETTEEEECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred             ECCEECcCCccccc---------CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence            99999965544211         35679999999999999999999999999999999988665

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=9.2e-41  Score=297.23  Aligned_cols=339  Identities=18%  Similarity=0.227  Sum_probs=244.8

Q ss_pred             CCCCCcchhccccCCCCC--CCCCCCCceEEEEE----eeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652          2 IAPSPFDFVNRFQNTSTP--WDPSTQKPIRFFIH----EVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI   75 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~----~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   75 (384)
                      |.+.|.|++|+..+....  .......+.+|.|.    +++.+|+|.|.|.+.+..+......     ..+.....+...
T Consensus        45 p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~-----~~l~V~~~p~~~  119 (404)
T 3p3y_A           45 PAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-----IRLQVSKSPLWP  119 (404)
T ss_dssp             SCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEE-----EEEEECCCCCCC
T ss_pred             CCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeee-----EEEEEeccCccc
Confidence            677899999976543221  11222356677775    8999999999999987533221000     000111122222


Q ss_pred             eeeCcceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         76 SYISQEQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ........+.+|++++|.|.+ .+.+.+.+.|++++....             ..+.++....     ...|.|.+++..
T Consensus       120 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~-------------~~~~~~~~~~-----~~~l~i~~v~~~  181 (404)
T 3p3y_A          120 KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI-------------TQDKRVSQGH-----NGDLYFSNVMLQ  181 (404)
T ss_dssp             CCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBC-------------CCCSSEEECT-----TSCEEESSCCSG
T ss_pred             cCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCcccc-------------CCCCcEEEcC-----CCcEEEEeeeec
Confidence            233445678999999999998 667788999999764321             1122332222     125999999999


Q ss_pred             C-CeeEEEEEEEccCcce--eeeEEEEEecC-------CccccC--CCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652        155 D-AGIYKCEVIISLNNKV--SAEVELIVRRP-------PIISDN--STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       155 d-~G~Y~C~~~~~~~~~~--~~~~~l~v~~~-------~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      | +|.|+|.+.+..+...  ...+.+.+...       |.+...  ......+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       182 d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~  261 (404)
T 3p3y_A          182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG  261 (404)
T ss_dssp             GGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTB
T ss_pred             cCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCE
Confidence            9 5999999987655432  23345555432       222111  1234568899999999999999999999999998


Q ss_pred             cccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652        223 AALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYP  301 (384)
Q Consensus       223 ~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  301 (384)
                      .+....... ..+..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|+|
T Consensus       262 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p  340 (404)
T 3p3y_A          262 DLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP  340 (404)
T ss_dssp             CCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEES
T ss_pred             ECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccC
Confidence            776544322 235689999999999999999999988874 778999999999988888888889999999999999999


Q ss_pred             CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        302 PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       302 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .+.+.|+++|..+..........      ..+..|.|.+++.+|+|.|+|.|.|..|....++.|.|.+
T Consensus       341 ~p~v~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          341 KPTVQWMVNGEPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             CCEEEEEETTEEGGGSCCCTTEE------EETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCceEEEECCEecCCCCCCceEE------ecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999987654211111      1356899999999999999999999999999999998865

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.3e-40  Score=292.75  Aligned_cols=339  Identities=15%  Similarity=0.186  Sum_probs=241.5

Q ss_pred             CCCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          2 IAPSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      |.+.|.|++|+..+.... .......+.+|.|.+++.+|+|.|.|.+.+..+......   ..+... ....|.+  .+.
T Consensus        35 p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~---~~l~v~-~~~~p~~--~~~  108 (395)
T 1bih_A           35 QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV---ISFRKT-YLIASPA--KTH  108 (395)
T ss_dssp             SSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCC---EEEEEE-EEECCCC--EEE
T ss_pred             CCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEE---EEEEEE-EeecCCc--CCc
Confidence            567899999986655332 111234567899999999999999999987532211000   000000 1112333  344


Q ss_pred             ceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe--
Q psy16652         81 EQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG--  157 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--  157 (384)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|++++......   ..    ......++....+     ..|.|.+++.+|+|  
T Consensus       109 ~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~---~~----~~~~~~~~~~~~~-----~~L~i~~v~~~d~G~~  176 (395)
T 1bih_A          109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN---AD----VTDFDRRITAGPD-----GNLYFTIVTKEDVSDI  176 (395)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG---GC----CCCCCTTEEECTT-----SCEEEEEECGGGCCSS
T ss_pred             ceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc---cc----cccccccEEEcCC-----CcEEEEEEeeccCCCc
Confidence            5668899999999996 66788899999987321100   00    0011234433321     25999999999999  


Q ss_pred             -eEEEEEEEccCcceeeeEE--EEEecCCc-------cccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652        158 -IYKCEVIISLNNKVSAEVE--LIVRRPPI-------ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       158 -~Y~C~~~~~~~~~~~~~~~--l~v~~~~~-------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~  227 (384)
                       .|+|.+.+..+........  +.+...+.       .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus       177 ~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~  256 (395)
T 1bih_A          177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN  256 (395)
T ss_dssp             EEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCC
T ss_pred             eEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCC
Confidence             9999998665543221111  11111110       0000134567899999999999999999999999998776543


Q ss_pred             CceeE------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCC-cccccCCcEEEEEEEecc
Q psy16652        228 GGSIY------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR-QGQALQYDAILECHVEAY  300 (384)
Q Consensus       228 ~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~  300 (384)
                      .....      .+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+.|.
T Consensus       257 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~  336 (395)
T 1bih_A          257 PEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGL  336 (395)
T ss_dssp             TTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEE
T ss_pred             CceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcc
Confidence            22111      22379999999999999999999998887566899999999998887766 678899999999999999


Q ss_pred             CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        301 PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       301 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      |.|.+.|+++|..+..+ ++.+         ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus       337 p~p~v~W~~~g~~~~~~-~~~~---------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          337 PAPNVVWSHNAKPLSGG-RATV---------TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             SCCCCEEEETTEECCSS-SEEE---------ETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCeeEEEECCEECCCC-ceEE---------ECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            99999999999998654 4333         2448999999999999999999999999999999887

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.2e-40  Score=303.43  Aligned_cols=333  Identities=16%  Similarity=0.166  Sum_probs=247.2

Q ss_pred             CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652          5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK   84 (384)
Q Consensus         5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v   84 (384)
                      .+.|++|+.++.      ......+|.|.+++.+|+|.|.|.+.+......         .+. ...+|.+...+....+
T Consensus        63 ~v~W~~~~~~~~------~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~---------~l~-V~~p~~~~~~~~~~~v  126 (524)
T 2ec8_A           63 FVKWTFEILDET------NENKQNEWITEKAEATNTGKYTCTNKHGLSNSI---------YVF-VRDPAKLFLVDRSLYG  126 (524)
T ss_dssp             EEEEEEESSSCC------EEECSSEEEESSCCSTTCEEEEEEETTSCEEEE---------EEE-CCCSSCSBCCCCCCCE
T ss_pred             eEEEcCCCcccc------ccCccceEEEcccchhhCEEEEEeecCCcceEE---------EEE-ECCCCcccccccceEE
Confidence            578999987552      345678999999999999999999876210000         001 1134444466777789


Q ss_pred             eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe-eEEEEE
Q psy16652         85 DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG-IYKCEV  163 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~  163 (384)
                      .+|++++|.|.+.+.+.+.+.|++.+...             +..+.++.+...     ..|.|.+++.+|+| .|+|.+
T Consensus       127 ~~G~~v~l~C~~~~~~~~~v~W~~~~g~~-------------l~~~~~~~~~~~-----~~L~i~~~~~~d~G~~Y~C~a  188 (524)
T 2ec8_A          127 KEDNDTLVRCPLTDPEVTNYSLKGCQGKP-------------LPKDLRFIPDPK-----AGIMIKSVKRAYHRLCLHCSV  188 (524)
T ss_dssp             ETTSCEEECCCBSCCCCSCEEEECSSSCC-------------CCSSCEEEEETT-----TEEEEESCCGGGTTCEEEEEE
T ss_pred             EcCCeEEEECcCCCCccceEEEEccCCcC-------------cCCCCceeECCC-----ccEEEeccchhhCCceEEEEE
Confidence            99999999999988666899999844321             112234433321     26999999999999 999999


Q ss_pred             EEccCcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCCcc--cccCc-------
Q psy16652        164 IISLNNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA--LSTGG-------  229 (384)
Q Consensus       164 ~~~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~--~~~~~-------  229 (384)
                      .+..+...+..+.|.|.    .+|.+.. .+....+.+|+.+.|.|.+.+.|.+. +.|++++..+  .....       
T Consensus       189 ~n~~~~~~s~~~~l~V~~~~~~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~  267 (524)
T 2ec8_A          189 DQEGKSVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF  267 (524)
T ss_dssp             C----CCCCCCEECCEECCCCSCCEEEC-SCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSS
T ss_pred             EECCceEEEEEEEEEEEeCCCCCCcEEe-cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCC
Confidence            87655445567788876    4555543 34556799999999999999888876 9999999873  22111       


Q ss_pred             eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC---CcccccCCcEEEEEEEeccCCCe-E
Q psy16652        230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVEAYPPPA-I  305 (384)
Q Consensus       230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~-v  305 (384)
                      .......|.|.++..+|+|.|+|.+.|..|.. ...+.|.|..+|.+...+.   ...+.+|+.+.|.|.+.|.|.|. +
T Consensus       268 ~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v  346 (524)
T 2ec8_A          268 NYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ  346 (524)
T ss_dssp             CEEEEEEEEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEE
T ss_pred             ccceEEEEEECCCCHHHCEEEEEEEEecCCce-EEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEE
Confidence            22345689999999999999999999988876 5688999999998876543   46788999999999999999998 9


Q ss_pred             EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .|+++|..+.............+.......|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus       347 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  414 (524)
T 2ec8_A          347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE  414 (524)
T ss_dssp             EEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEE
T ss_pred             EEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCe
Confidence            99999998876552111111111111356899999999999999999999999999999999987764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.1e-38  Score=271.00  Aligned_cols=277  Identities=22%  Similarity=0.373  Sum_probs=219.2

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEE-eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMK-MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ++.+...|....+.+|++++|.|.+.+.+ .+.+.|++ ++....             ....++.+... ......|.|.
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~-------------~~~~~~~~~~~-~~~~~~L~i~   67 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------------PNQQRISVVWN-DDDSSTLTIY   67 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCC-------------SSCSSEEEEEE-ETTEEEEEEC
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECc-------------cCCceEEEEEc-CCCeEEEEEe
Confidence            57788899999999999999999998865 68999999 443211             11234433321 2345689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      +++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        68 ~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~  146 (291)
T 1qz1_A           68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD  146 (291)
T ss_dssp             SCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEEC-CSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCC
T ss_pred             cCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCC-CCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCC
Confidence            999999999999999776666677888888877766533 4556789999999999999989999999999887653322


Q ss_pred             ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCC-CceeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCC
Q psy16652        230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVG-RGMKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPP  303 (384)
Q Consensus       230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~  303 (384)
                         ....+..|.|.++..+|+|.|+|.+.|..+ ......+.+.|..+|.+.....  ...+..|+.+.|.|.+.|.|.|
T Consensus       147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  226 (291)
T 1qz1_A          147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP  226 (291)
T ss_dssp             TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC
T ss_pred             ceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC
Confidence               123456899999999999999999998653 3345677888888888776543  3467889999999999999999


Q ss_pred             eEEEEECCEEecCCC----ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        304 AIVWIKDGVQIMNNQ----HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       304 ~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .+.|+++|..+....    ++...       .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       227 ~i~W~~~g~~~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          227 TMSWTKDGEPIENEEEDDEKHIFS-------DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEETTEECCCC--CCSSEEEC-------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cEEEEECCEECcCCCCCCcceEEc-------CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            999999999987664    22221       1356899999999999999999999999999999999875

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-39  Score=273.08  Aligned_cols=280  Identities=24%  Similarity=0.375  Sum_probs=217.4

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+.+..+.+|++++|.|.+.+.+. .+.|+++++..             .....++.+..  ......|.|.+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~-------------~~~~~~~~~~~--~~~~~~L~i~~   66 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK-------------IISTQRVVVQK--EGVRSRLTIYN   66 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCB-------------CCCBTTEEEEE--ETTEEEEEECS
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcC-------------ccCCCcEEEec--CCCEEEEEEcc
Confidence            5678888899999999999999999988765 89999944321             12234555444  33456899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-  229 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-  229 (384)
                      ++.+|+|.|+|.+.+..+...+..+.|.|..++.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... 
T Consensus        67 ~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~  145 (291)
T 2wim_A           67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN  145 (291)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSC-CCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCS
T ss_pred             CCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeC-CCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCc
Confidence            99999999999998766555567778888877765533 4556789999999999999989999999999876654221 


Q ss_pred             --eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCe
Q psy16652        230 --SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPA  304 (384)
Q Consensus       230 --~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~  304 (384)
                        ....+..|.|.++..+|+|.|+|.+.+..+.. ....+.+.+..+|.+...+.  ...+..|+.+.|.|.+.|.|.|.
T Consensus       146 ~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~  225 (291)
T 2wim_A          146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA  225 (291)
T ss_dssp             SEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCE
T ss_pred             eEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCe
Confidence              12235689999999999999999999976443 35667888888887765443  35678899999999999999999


Q ss_pred             EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652        305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG  374 (384)
Q Consensus       305 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  374 (384)
                      +.|+++|..+..+.++.+..       ....|.|.+++.+|+|.|+|.|.|..|..++++.|.|..+++.
T Consensus       226 v~W~~~g~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  288 (291)
T 2wim_A          226 ISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH  288 (291)
T ss_dssp             EEEEETTEECCCTTTEEECS-------TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC------
T ss_pred             EEEEECCEECcCCccEEEcC-------CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEeccc
Confidence            99999999998777655432       3578999999999999999999999999999999999988753

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=3.8e-39  Score=303.50  Aligned_cols=316  Identities=18%  Similarity=0.224  Sum_probs=238.3

Q ss_pred             CCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCccee
Q psy16652          4 PSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQI   83 (384)
Q Consensus         4 ~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   83 (384)
                      +.+.|++|+..+....-......+.+|.|.+++.+|+|.|.|.+.+..+.....     ...+.....++.....+....
T Consensus       318 ~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~-----~~~l~V~~~p~~~~~~~~~~~  392 (642)
T 1e07_A          318 TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD-----PVILNVLYGPDDPTISPSYTY  392 (642)
T ss_pred             ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee-----eEEEEEEcCCCCCeecCCceE
Confidence            579999997665422211112346799999999999999999998764321110     001111122223344566677


Q ss_pred             eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         84 KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      +.+|+.++|.|.+.+.|.+.+.|++++....                           ....|.|.+++.+|+|.|+|.+
T Consensus       393 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~---------------------------~~~~L~i~~~~~~d~G~Y~C~a  445 (642)
T 1e07_A          393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ---------------------------HTQELFISNITEKNSGLYTCQA  445 (642)
T ss_pred             ecCCCcEEEEEEcCccCCCeEEEEECCEEcC---------------------------CCceEEEccCChhhCeEEEEEE
Confidence            8999999999999988888999999775310                           1125999999999999999999


Q ss_pred             EEccCcc-eeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEE
Q psy16652        164 IISLNNK-VSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNIL  237 (384)
Q Consensus       164 ~~~~~~~-~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l  237 (384)
                      .|..+.. .+..+.|.|..+   |.+.  ......+.+|+.+.|.|.+.+ |.+.+.|++++..+........  .+..|
T Consensus       446 ~n~~g~~~~s~~~~v~v~~~~~~p~i~--~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L  522 (642)
T 1e07_A          446 NNSASGHSRTTVKTITVSAELPKPSIS--SNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTL  522 (642)
T ss_pred             EcCCCCCcccceEEEEEeccCCCceEe--cCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEE
Confidence            9776543 234456666542   3332  133456789999999999985 7789999999987765544332  24689


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe-EEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC
Q psy16652        238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV-ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN  316 (384)
Q Consensus       238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~  316 (384)
                      .|.++..+|+|.|+|.+.|..|...+..+.|.|..+|. +...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus       523 ~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~  602 (642)
T 1e07_A          523 TLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH  602 (642)
T ss_pred             EEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc
Confidence            99999999999999999999887656678888887664 55556677889999999999999999999999999987752


Q ss_pred             CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                                      ...|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       603 ----------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          603 ----------------TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             ----------------CceEEECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence                            34699999999999999999999999999888888764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=272.08  Aligned_cols=278  Identities=20%  Similarity=0.352  Sum_probs=207.2

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++...               ...++............|.|
T Consensus         3 ~~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i---------------~~~~~~~~~~~~~~~~~L~i   67 (304)
T 2yd9_A            3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---------------NSQRFETIEFDESAGAVLRI   67 (304)
T ss_dssp             -CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC----------------------CTTEEEEEETTTTEEEEEE
T ss_pred             CccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEEC---------------CCCceEEEEecCCCceEEEE
Confidence            356789999999999999999999999998888899999987652               23344444322444578999


Q ss_pred             eecCC-CCCeeEEEEEEEccCcceeeeEEEEEecCC-------ccccCCCceEEeecCceEEEEEEecccCCCeEEEEeC
Q psy16652        149 KEIQE-TDAGIYKCEVIISLNNKVSAEVELIVRRPP-------IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD  220 (384)
Q Consensus       149 ~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~  220 (384)
                      .+++. +|+|.|+|.+.+.. +..+..+.|.|..++       .+. ..+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus        68 ~~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~p~~~p~i~-~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~  145 (304)
T 2yd9_A           68 QPLRTPRDENVYECVAQNSV-GEITVHAKLTVLREDQLPSGFPNID-MGPQLKVVERTRTATMLCAASGNPDPEITWFKD  145 (304)
T ss_dssp             CSCCTTTTCSEEEEEEECSS-CEECCEEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEECCEEECSSCCEEEEEET
T ss_pred             ecccccCCCeEEEEEEECCC-CeEEEEEEEEEeccccCCCCCCeee-cCCccEEEeCCCeEEEEEECccCCCCeEEEEEC
Confidence            99998 99999999998554 446777888887652       222 224556788999999999999999999999999


Q ss_pred             CCcccccCc----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE---ecCeEEecCCCcccccCCcEEE
Q psy16652        221 NSAALSTGG----SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE---FAPVITINRPRQGQALQYDAIL  293 (384)
Q Consensus       221 ~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l  293 (384)
                      +..+.....    ....+..|.|.+++.+|+|.|+|.+.|..+...+....+.|.   .+|.+...+....+.+|+.+.|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l  225 (304)
T 2yd9_A          146 FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI  225 (304)
T ss_dssp             TEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEE
T ss_pred             CEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEE
Confidence            877654321    123355899999999999999999999877654333455553   5777777777778899999999


Q ss_pred             EEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       294 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .|.+.|.|.|.+.|+++|..+.......         .....|.|.++  +|+|.|+|.|.|..|....++.|.|.+++.
T Consensus       226 ~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          226 TCVAVGSPMPYVKWMQGAEDLTPEDDMP---------VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             EEEEEEESCCEEEEEETTEECSCSSSCC---------BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             EEEEeeeCCCEEEEEECCEECCCccccc---------CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence            9999999999999999999887654321         12334555544  699999999999999999999999988764


Q ss_pred             C
Q psy16652        374 G  374 (384)
Q Consensus       374 ~  374 (384)
                      .
T Consensus       295 ~  295 (304)
T 2yd9_A          295 A  295 (304)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.3e-38  Score=299.86  Aligned_cols=322  Identities=18%  Similarity=0.203  Sum_probs=236.8

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      |.+.|.|++|+..+....--.....+.+|.|.+++.+|+|.|.|.+.+........     ...+.....++.....+..
T Consensus       138 p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~-----~~~l~V~~~p~~~~~~~~~  212 (642)
T 1e07_A          138 QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSD-----SVILNVLYGPDAPTISPLN  212 (642)
T ss_pred             CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccc-----eEEEEEEeCCCCcEEecCC
Confidence            46789999997665433211122346799999999999999999998754321110     0011112223333445666


Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++...                           .....|.|.+++.+|+|.|+|
T Consensus       213 ~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i---------------------------~~~~~L~i~~~~~~d~G~Y~C  265 (642)
T 1e07_A          213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ---------------------------QSTQELFIPNITVNNSGSYTC  265 (642)
T ss_pred             cccccCCEEEEEEEcCCCCCcEEEEEECCeEc---------------------------ccCCceEEecccccCCeEEEE
Confidence            77899999999999988888899999976541                           011259999999999999999


Q ss_pred             EEEEccCcc-eeeeEEEEEecCCcccc-CCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEE
Q psy16652        162 EVIISLNNK-VSAEVELIVRRPPIISD-NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNIL  237 (384)
Q Consensus       162 ~~~~~~~~~-~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l  237 (384)
                      .+.+..+.. .+..+.|.|..++.... .......+..|+.+.|.|.+.+.| +.+.|++++..+........  .+..|
T Consensus       266 ~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L  344 (642)
T 1e07_A          266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTL  344 (642)
T ss_pred             EEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEE
Confidence            999766543 34456677765432111 122334566688899999998865 69999999987755443332  35689


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE-EecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC
Q psy16652        238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN  316 (384)
Q Consensus       238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~  316 (384)
                      .|.++..+|+|.|+|.+.|..|...+..+.|.|..+|.. .+.+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..
T Consensus       345 ~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~  424 (642)
T 1e07_A          345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH  424 (642)
T ss_pred             EEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC
Confidence            999999999999999999988876667788888877753 3455566788999999999999999999999999987742


Q ss_pred             CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE--EEEEEeeee
Q psy16652        317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE--IELFDRETQ  372 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~~  372 (384)
                                      ...|.|.+++.+|.|.|+|.|.|..|....+  +.|.|.+++
T Consensus       425 ----------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~  466 (642)
T 1e07_A          425 ----------------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL  466 (642)
T ss_pred             ----------------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC
Confidence                            3469999999999999999999999877654  555665543

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.2e-39  Score=299.51  Aligned_cols=347  Identities=14%  Similarity=0.137  Sum_probs=228.3

Q ss_pred             CCCCcchh-ccccCCCCCCCCCCCCceEEEEEeeecceEE-EEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          3 APSPFDFV-NRFQNTSTPWDPSTQKPIRFFIHEVTGEKVT-SVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         3 ~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      .+.|.||+ |+..+.... +.....+..|.|.+++.+|+| .|.|.+.+......... + .+........+|.+...+.
T Consensus       143 ~~~v~W~~~~g~~l~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~-~-~l~V~~~~~~~p~i~~~~~  219 (524)
T 2ec8_A          143 VTNYSLKGCQGKPLPKDL-RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK-F-ILKVRPAFKAVPVVSVSKA  219 (524)
T ss_dssp             CSCEEEECSSSCCCCSSC-EEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCC-E-ECCEECCCCSCCEEECSCS
T ss_pred             cceEEEEccCCcCcCCCC-ceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEE-E-EEEEEeCCCCCCcEEecCC
Confidence            47899988 554432211 111123558999999999999 99999886422111000 0 0000001246788888888


Q ss_pred             ceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-CCCceEEEEEeecCCCCCee
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ...+.+|++++|.|.+.+.+.+. +.|++++....     +.       ...+..+..+ .......|.|.+++.+|+|.
T Consensus       220 ~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~  287 (524)
T 2ec8_A          220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK-----LQ-------EKYNSWHHGDFNYERQATLTISSARVNDSGV  287 (524)
T ss_dssp             EEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCC-----CC-------EEEEEEECSSSCEEEEEEEEESSCCTTTCEE
T ss_pred             cceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCc-----cc-------cccccccccCCccceEEEEEECCCCHHHCEE
Confidence            88899999999999999877665 99999886520     00       0011111110 12234589999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEecCCccccCC--CceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeE---
Q psy16652        159 YKCEVIISLNNKVSAEVELIVRRPPIISDNS--TRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIY---  232 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~---  232 (384)
                      |+|.+.+.. +.....+.|.|..+|.+....  .....+.+|+.+.|.|.+.+.|.+. +.|++++..+........   
T Consensus       288 Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~  366 (524)
T 2ec8_A          288 FMCYANNTF-GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE  366 (524)
T ss_dssp             EEEEEECSS-CEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC
T ss_pred             EEEEEEecC-CceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc
Confidence            999998644 445568889998887665322  2467899999999999999999998 999999987765442111   


Q ss_pred             ------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEE
Q psy16652        233 ------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV  306 (384)
Q Consensus       233 ------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  306 (384)
                            ....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+.   ...|   .|.|.+.|.|.|.+.
T Consensus       367 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~  439 (524)
T 2ec8_A          367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVYVNTKPEILTYDR---LVNG---MLQCVAAGFPEPTID  439 (524)
T ss_dssp             SSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECEEEEEEEEEC---CSSS---CEEEEEEEESCCEEE
T ss_pred             cCCCceeEEEEEEeecCcccCeEEEEEEEecCceE-EEEEEEEEecCCeEeeccc---CcCc---EEEEEEEeecCCEEE
Confidence                  23589999999999999999999998874 7789999999998876543   2344   899999999999999


Q ss_pred             EEECCEEecCC-------CceeeeeeeccCccccceEE----EeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        307 WIKDGVQIMNN-------QHYSVSHFATSDEFSDTSLR----VITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       307 W~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~----i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      |++++..+...       +......    .....+.+.    +.....+|.|.|+|.|.|..|.....+.|.|++++...
T Consensus       440 W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~~  515 (524)
T 2ec8_A          440 WYFCPGTEQRCSASVLPVDVQTLNS----SGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQ  515 (524)
T ss_dssp             CCCC----------CCCCCCCCCCC-----CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-------
T ss_pred             EEECCCcccccccccCCCCceeeee----ccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHHH
Confidence            99998765211       1100000    001233333    33344689999999999999999999999999887654


Q ss_pred             c
Q psy16652        376 E  376 (384)
Q Consensus       376 ~  376 (384)
                      +
T Consensus       516 ~  516 (524)
T 2ec8_A          516 I  516 (524)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=4e-39  Score=293.67  Aligned_cols=339  Identities=12%  Similarity=0.111  Sum_probs=213.9

Q ss_pred             CCCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          1 FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      +|.+.+.|++++.+...  ...............++.+|+|.|.|.+.+..+.....     ... .....+|.+  ++.
T Consensus       166 ~P~P~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~-----~~~-l~V~~~p~~--~p~  235 (527)
T 3qs9_E          166 VPEPIVEWVLCDSQGES--CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR-----LFT-IDLNQTPQT--TLP  235 (527)
T ss_dssp             SSCCEEEEEEC---------------CEEECCSEECCCCSSCEEEEEECSSCEEEEE-----CEE-EESSSCCCC--SCC
T ss_pred             ecCCeEEEEECCCCCcc--ccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccce-----EEE-EEEeccCcc--CCC
Confidence            47889999998754321  11122233334455677899999999998753322110     000 011223333  455


Q ss_pred             ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ...+.+|+++.|.|.+. +.|.+.+.|++++......... .   .......+.      .....+|.|.+++.+|+|.|
T Consensus       236 ~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~-~---~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y  305 (527)
T 3qs9_E          236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF-E---MSTYSTNRT------MIRILFAFVSSVARNDTGYY  305 (527)
T ss_dssp             EEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEE-E---EEEEETTTE------EEEEEEEEESSCCGGGCEEE
T ss_pred             ceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCcee-e---eeeeccCcc------eeeEEEEEEccCCcccCeEE
Confidence            67789999999999997 7888999999988753211000 0   000001111      11234699999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEecCCccccCC-CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEE
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRPPIISDNS-TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK  238 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~  238 (384)
                      +|.+.|.    .+..+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.|.+.|++++..+.........+..|.
T Consensus       306 ~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~  381 (527)
T 3qs9_E          306 TCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS  381 (527)
T ss_dssp             EEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEE
T ss_pred             EEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEE
Confidence            9999754    6677888888777654322 2345678999999999999999999999999987765544334566899


Q ss_pred             EcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC
Q psy16652        239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ  318 (384)
Q Consensus       239 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~  318 (384)
                      |.+++.+|+|.|+|.|.|..|.. ...+.|.|..+|.+...+.        ...|.|.+.|.|.|.|.|++++.......
T Consensus       382 I~~v~~~D~G~YtC~A~N~~g~~-~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~~  452 (527)
T 3qs9_E          382 KFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCT  452 (527)
T ss_dssp             EECCCTTCCSCEEEEEEETTEEE-EEEEEEC--CCCEEEECCC--------CE---EEEECSSCCEEEEECCC-----CC
T ss_pred             EecCCcccCEEEEEEEEeCCCcE-EEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCCc
Confidence            99999999999999999998875 6689999999998876432        23579999999999999998865542111


Q ss_pred             c------eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        319 H------YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       319 ~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .      ................+++.....+|.|.|+|.|.|..|..+..+.|.|.++.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p~  512 (527)
T 3qs9_E          453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF  512 (527)
T ss_dssp             CCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC------
T ss_pred             cccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCCc
Confidence            1      00000000000011223333334569999999999999999999999876654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=5.9e-38  Score=303.23  Aligned_cols=339  Identities=21%  Similarity=0.275  Sum_probs=258.3

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      |.+.+.|++|+.++..        ...+|.|.+++.+|+|.|.|.+.+........    ..+.......+|.+...+..
T Consensus       371 p~~~v~W~k~g~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~~~~~p~i~~~~~~  438 (816)
T 3dmk_A          371 PIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAEAS----AELKLGGRFDPPVIRQAFQE  438 (816)
T ss_dssp             CCCEEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEC----CEEECCCSSCCCEEEEECCC
T ss_pred             CCCEEEEEECCEECCC--------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE----EEEEEccccCCCceEecCcc
Confidence            5678999999866542        34689999999999999999988753221110    00111122467788887888


Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEe---eCCCCceEEEEEeecCCCCCee
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLT---TDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++....              ...++...   .........|.|.+++.+|+|.
T Consensus       439 ~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~--------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  504 (816)
T 3dmk_A          439 ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA--------------NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL  504 (816)
T ss_dssp             EEECSSSCEEEEEEEECSSCCEEEEEETTEECC--------------SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEE
T ss_pred             eEEcCCCCEEEEEEEecCCCCEEEEEECCEECC--------------CCCCcccccEEecCCCcEEEEEEeeccccCCEE
Confidence            889999999999999998888999999775421              12222221   1112334579999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEE
Q psy16652        159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNIL  237 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l  237 (384)
                      |+|.+.|.. +.....+.|.|..+|.+..  .....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ...+..|
T Consensus       505 Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~--~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l  581 (816)
T 3dmk_A          505 YKCIAKSKV-GVAEHSAKLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL  581 (816)
T ss_dssp             EEEEEEETT-EEEEEEEEEEECSSCEECC--CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEE
T ss_pred             EEEEEEECC-CeEEEEEEEEEecCCeeEc--cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeE
Confidence            999998654 4566778888888876543  34466889999999999999888899999999876554433 2346789


Q ss_pred             EEcCCC-CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEec-CCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEe
Q psy16652        238 KIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN-RPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQI  314 (384)
Q Consensus       238 ~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~  314 (384)
                      .|.++. .+|+|.|+|.+.|..|...+..+.+.+..+|.+... .....+..|+.+.|.|.+.+.+++ .+.|+++|..+
T Consensus       582 ~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l  661 (816)
T 3dmk_A          582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI  661 (816)
T ss_dssp             EESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCC
T ss_pred             EEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEc
Confidence            999998 589999999999998876677788888888865432 344567889999999999876655 99999999988


Q ss_pred             cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      ............    ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus       662 ~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  716 (816)
T 3dmk_A          662 SEDLGITTSRVG----RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR  716 (816)
T ss_dssp             CGGGTCEEEEET----TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEE
T ss_pred             CCCCCeeEEEcC----CCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCc
Confidence            655544433211    1356899999999999999999999999999999999888764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=7.6e-38  Score=287.56  Aligned_cols=329  Identities=18%  Similarity=0.207  Sum_probs=216.4

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCC--c
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADD--Y  102 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~  102 (384)
                      ....+|.|.+++.+|+|.|.|.+....+.......-..+........+|.+...+....+.+|+.++|.|.+.+.++  .
T Consensus        67 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  146 (523)
T 2rcj_C           67 GTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAV  146 (523)
T ss_pred             CCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCce
Confidence            34568999999999999999999875321110000000000111235677777677777788999999999988654  4


Q ss_pred             cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEE---
Q psy16652        103 PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV---  179 (384)
Q Consensus       103 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---  179 (384)
                      .+.|++++..........   ......++.+..       ...|.|.+++.+|+|.|+|.+.+..+. ....+.+.+   
T Consensus       147 ~v~W~k~g~~l~~~~~~~---~~~~~~~~~~~~-------~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~  215 (523)
T 2rcj_C          147 TVAWKADGSPVKAGVETT---KPSKQSNNKYAA-------SSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTVAPTECSA  215 (523)
T ss_pred             EEEEecCCCCCCCceEec---cccccCCCCEEE-------EEEEEEechhcCCCceEEEEEEecCcc-cccceeeeecCC
Confidence            899999876532110000   000001122222       236999999999999999999876443 333333321   


Q ss_pred             -ecCCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccccc--------CceeEeccEEEEcCCCCCCCe
Q psy16652        180 -RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALST--------GGSIYRGNILKIPNITKTDRG  248 (384)
Q Consensus       180 -~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G  248 (384)
                       ..+|.+... .....+.+|+.+.|.|.+.+. |.+ .+.|++++..+...        .+.....+.|.|.++..+| |
T Consensus       216 ~~~~P~v~~~-~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G  293 (523)
T 2rcj_C          216 STKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-Q  293 (523)
T ss_pred             CCcCCEEEec-CCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-c
Confidence             223333322 222345789999999999885 767 89999998764321        1111223589999999999 9


Q ss_pred             EEEEEEEeCCCCceeeEEEEEEEecCeEEecCC-Ccc-cccCCcEEEEEEEeccCC----CeEEEEECCEEecCCCceee
Q psy16652        249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP-RQG-QALQYDAILECHVEAYPP----PAIVWIKDGVQIMNNQHYSV  322 (384)
Q Consensus       249 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~-~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~~~~~~~~~  322 (384)
                      .|+|.|.|..+.. .....+.+...|.+.+.++ ... +.+|+.+.|.|.+.|.|+    +.|.|+++|..+........
T Consensus       294 ~Y~C~a~n~~g~~-~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~  372 (523)
T 2rcj_C          294 TYICNVNHKPSNT-KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR  372 (523)
T ss_pred             eEEEEEEeCCCCc-ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCc
Confidence            9999999988875 4556666666676544333 333 678999999999998654    48999999999875543222


Q ss_pred             eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       323 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .....+.....+.|.|..+..+|+|.|+|.|.|..+.......|.
T Consensus       373 ~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          373 EQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             eecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence            111112222345688999999999999999999988765554444

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=5.5e-38  Score=303.43  Aligned_cols=342  Identities=18%  Similarity=0.216  Sum_probs=250.1

Q ss_pred             CCCCCCcchhccccCCCCCC-------CCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCC
Q psy16652          1 FIAPSPFDFVNRFQNTSTPW-------DPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTP   73 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p   73 (384)
                      .|.+.+.|++|+.++.....       .........|.|.+++.+|+|.|+|.+.+..+......       ......+|
T Consensus       456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~-------~l~V~~~p  528 (816)
T 3dmk_A          456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA-------KLNVYGLP  528 (816)
T ss_dssp             SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEE-------EEEECSSC
T ss_pred             CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEE-------EEEEecCC
Confidence            36788999999876653220       01112234799999999999999999987533211100       00112344


Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC-
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ-  152 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-  152 (384)
                      .+ ..+....+.+|+++.|.|.+.+.|.+.+.|++++...              ....++.+..     +.+|.|.++. 
T Consensus       529 ~~-~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l--------------~~~~~~~~~~-----~~~l~i~~v~~  588 (816)
T 3dmk_A          529 YI-RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL--------------PINRKQKVFP-----NGTLIIENVER  588 (816)
T ss_dssp             EE-CCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEES--------------CCSTTEEECT-----TSEEEESSCCH
T ss_pred             ee-EccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEc--------------ccCCceEEec-----CCeEEEEecCc
Confidence            33 3345567889999999999998888899999977542              1122222221     2269999998 


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccccCcee
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALSTGGSI  231 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~  231 (384)
                      .+|+|.|+|.+.|..+...+..+.+.|..+|...........+.+|+.+.|.|.+.+.+. +.+.|++++..+.......
T Consensus       589 ~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~  668 (816)
T 3dmk_A          589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT  668 (816)
T ss_dssp             HHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCE
T ss_pred             cccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCee
Confidence            699999999999876656667778888877766544444556889999999999976555 4999999998775443322


Q ss_pred             E-----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEE
Q psy16652        232 Y-----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV  306 (384)
Q Consensus       232 ~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  306 (384)
                      .     ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.
T Consensus       669 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~  747 (816)
T 3dmk_A          669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ-QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVT  747 (816)
T ss_dssp             EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEE
T ss_pred             EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccE-EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEE
Confidence            1     23579999999999999999999988876 67788999999999888888888899999999999999999999


Q ss_pred             EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |++++..+...... +.. .......+++|.|.+++.+|+|.|+|.|.|..|+..+++.+.....+
T Consensus       748 W~k~~~~~~~~~~~-~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~~  811 (816)
T 3dmk_A          748 WKKAVGDTPGEYKD-LKK-SDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH  811 (816)
T ss_dssp             CCEECSSSTTCCBC-CCC-BTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEEC-
T ss_pred             EEecCCCCCccccc-ccc-CCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEeecc
Confidence            99987654322110 000 00011135689999999999999999999999999999887765543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=6.1e-37  Score=285.47  Aligned_cols=327  Identities=14%  Similarity=0.185  Sum_probs=223.7

Q ss_pred             ceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCC-C-ccE
Q psy16652         27 PIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYAD-D-YPV  104 (384)
Q Consensus        27 ~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~-~~v  104 (384)
                      ..+|.|.+++.+|+|.|.|.+.+.........      .+.....      ++....+.+|+.+.|.|.+...+ . +.+
T Consensus       184 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~------~l~V~~~------~p~~~~~~~G~~v~l~C~~~~~~~~~~~~  251 (585)
T 2ocw_A          184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNA------DLQVLKP------EPELVYEDLRGSVTFHCALGPEVANVAKF  251 (585)
T ss_pred             EEEEEEccCChhHCeEEEEEeccCCccccceE------EEEEccC------CCceeEEcCCCcEEEEEEcCCCCCCceEE
Confidence            34899999999999999999986533211100      0011111      13334578999999999973332 2 578


Q ss_pred             EEE-EeCCCCCCcccceec-cCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcce----eeeEEEE
Q psy16652        105 IWM-KMDTAKKMEPLPISM-SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV----SAEVELI  178 (384)
Q Consensus       105 ~W~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~  178 (384)
                      .|+ +++...   ...+.. .........++.+......+.+.|.|.+++.+|+|.|+|.+.+. +...    ...+.|.
T Consensus       252 ~w~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~  327 (585)
T 2ocw_A          252 LCRQSSGENC---DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLF  327 (585)
T ss_pred             EEEeCCCCCc---ceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEE
Confidence            886 554321   111111 11111234566665543455568999999999999999999864 3322    2677888


Q ss_pred             EecCCccccCCCceEEeecCceEEEEEEecccCCCeE----EEEe--CCC--ccccc---------CceeE----ecc--
Q psy16652        179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTI----SWRR--DNS--AALST---------GGSIY----RGN--  235 (384)
Q Consensus       179 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v----~W~~--~~~--~~~~~---------~~~~~----~~~--  235 (384)
                      |..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+    .|++  ++.  .+...         .....    ..+  
T Consensus       328 V~~~p~~~~-~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~  406 (585)
T 2ocw_A          328 VNEESTIPR-SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTF  406 (585)
T ss_pred             Eeccccccc-CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEE
Confidence            888876653 356677889999999999999888876    7999  775  33221         11111    112  


Q ss_pred             EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEe----ccCCCeEEEEECC
Q psy16652        236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE----AYPPPAIVWIKDG  311 (384)
Q Consensus       236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~v~W~~~~  311 (384)
                      .|.|.+++.+|+|.|+|.+ |..+.. +..+.|.|...|.....+....+.+|+.+.|.|.+.    +.|.+.+.|+++|
T Consensus       407 ~L~I~~v~~~D~G~Y~C~a-n~~g~~-~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g  484 (585)
T 2ocw_A          407 TVILNQLTSRDAGFYWCLT-NGDTLW-RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG  484 (585)
T ss_pred             EEEECCCChhhCEEEEEcc-cCCCcc-ceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecC
Confidence            4999999999999999999 777664 667888887644333346667789999999999997    6788899999999


Q ss_pred             EEecCCCceee-e-eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeee
Q psy16652        312 VQIMNNQHYSV-S-HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQ  372 (384)
Q Consensus       312 ~~~~~~~~~~~-~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~  372 (384)
                      ..+........ . ............|.|.+++.+|+|.|+|.|.|..|..... +.|.|.++|
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             ceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            87754321110 0 0000011123689999999999999999999999977654 899999887

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=1.8e-37  Score=271.76  Aligned_cols=290  Identities=13%  Similarity=0.095  Sum_probs=211.1

Q ss_pred             CCCCCcchhccccCCCC------------CCCCC-------CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHH
Q psy16652          2 IAPSPFDFVNRFQNTST------------PWDPS-------TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSF   62 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~------------~~~~~-------~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~   62 (384)
                      |.+.+.|++++.+....            ...+.       .....+|.|.+++.+|+|.|.|.+........+      
T Consensus        22 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~l------   95 (363)
T 1wio_A           22 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL------   95 (363)
T ss_dssp             SSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEEEEEEE------
T ss_pred             CceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEECCCcEEE------
Confidence            56789999996431100            01111       235778999999999999999998875321111      


Q ss_pred             HhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652         63 LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS  142 (384)
Q Consensus        63 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
                          ...    .+.. +....+.+|++++|.|.+.+.|.+.+.|++++...                          ...
T Consensus        96 ----~V~----~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------------------~~~  140 (363)
T 1wio_A           96 ----LVF----GLTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------------IQG  140 (363)
T ss_dssp             ----EEE----EEEE-SSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------------------EEE
T ss_pred             ----EEE----eCCC-CCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------------------ccc
Confidence                000    1222 22345789999999999988888899999876431                          011


Q ss_pred             eEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-----cCCCeEEE
Q psy16652        143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-----FPAPTISW  217 (384)
Q Consensus       143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~v~W  217 (384)
                      ...|.|.+++.+|+|.|+|.+.+. .+.....+.|.|..+|..    +....+.+|+.+.|.|.+.+     .|.+.+.|
T Consensus       141 ~~~L~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~l~v~~~p~~----~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W  215 (363)
T 1wio_A          141 GKTLSVSQLELQDSGTWTCTVLQN-QKKVEFKIDIVVLAFQKA----SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW  215 (363)
T ss_dssp             SSEEEECSBCGGGCEECEEEEEET-TEEEEECCEECEECCSCS----EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEE
T ss_pred             ceEEEEeeCChhcCCEEEEEEecC-CCeEEEEEEEEEecCCCC----CCceEEecCCEEEEEEEEecccccCCCceeEEE
Confidence            237999999999999999999854 444555666777655543    25567889999999998876     67789999


Q ss_pred             EeCCCcccc--------cCceeE------------e--ccEEEEcCCCCCCCeEEEEEEEeC--CCCceeeEEEEEEEec
Q psy16652        218 RRDNSAALS--------TGGSIY------------R--GNILKIPNITKTDRGTYYCVAQNG--VGRGMKRNIAVEVEFA  273 (384)
Q Consensus       218 ~~~~~~~~~--------~~~~~~------------~--~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~~~  273 (384)
                      ++++..+..        ......            .  ...|.|.++..+|+|.|+|.|.|.  .|.. +..+.|.|...
T Consensus       216 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~~v  294 (363)
T 1wio_A          216 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL-HQEVNLVVMRA  294 (363)
T ss_dssp             EESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCE-EEEEEEEEEEE
T ss_pred             ecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeE-EEEEeEEEEEe
Confidence            999887654        222221            1  338999999999999999999999  7854 67777777611


Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCe--EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                                   .|+.+.|.|.+.+.|+|.  +.|+++|..+..                ...|.|..++.+|+|.|+|
T Consensus       295 -------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~----------------~~~l~i~~v~~~d~G~Y~C  345 (363)
T 1wio_A          295 -------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV----------------SKREKAVWVLNPEAGMWQC  345 (363)
T ss_dssp             -------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE----------------EESSSEEEESSCCSEEEEE
T ss_pred             -------------cCCCeeEEEEEccccCCCccEEEEeCCCceee----------------eeeeeeeeeccccceeEEE
Confidence                         278899999999999887  999999976642                2346788999999999999


Q ss_pred             EEEeCCcceEEEEEEEE
Q psy16652        352 KAANKYGSAQKEIELFD  368 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v  368 (384)
                      .|.|. |....+..|.|
T Consensus       346 ~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          346 LLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             EECSS-SSCCEEEEEEE
T ss_pred             EEecC-CeEEEecceEe
Confidence            99965 45555556655

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=2.7e-36  Score=258.91  Aligned_cols=285  Identities=15%  Similarity=0.233  Sum_probs=208.9

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCc-----cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCC---CCceEEEE
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDY-----PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP---ETSTYILS  147 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~  147 (384)
                      ...|..+.+..|++|+|.|.+.+.+..     .+.|+|++...... ......+.......++.+....   ...+.+|.
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMA-VFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSE-EEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceE-EEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            445667778999999999999875433     49999987653211 1111111122334455554321   23456899


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccc
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALS  226 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~  226 (384)
                      |.+++.+|+|.|+|.+.+...+..+..+.|.+..+|..... .....+..++.+.+.|.+ .+.|.+.+.|++++..+..
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~-~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~  161 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN  161 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEE-ECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceec-ccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence            99999999999999997666666777777877777655432 223346678889999987 4688899999999876643


Q ss_pred             cCce-------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCC-cccccCCcEEEEEEE
Q psy16652        227 TGGS-------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPR-QGQALQYDAILECHV  297 (384)
Q Consensus       227 ~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~  297 (384)
                      ....       ....+.|.|.....+|+|.|+|.|.|..+.. ....+.|.|.++|.+.+.+.. ..+..|+.++|.|.+
T Consensus       162 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~  241 (313)
T 4fqp_A          162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA  241 (313)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE
T ss_pred             cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe
Confidence            3211       1123468899999999999999999976543 355677888889988765544 445667899999999


Q ss_pred             eccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        298 EAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       298 ~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .|+|.| .|.|+++|..+.....           ..+.+|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|...||
T Consensus       242 ~g~P~p~~v~W~~~~~~l~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          242 RSNPEPTGYNWSTTMGPLPPFAV-----------AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP  307 (313)
T ss_dssp             EEESCCCEEEEEETTBSCCTTEE-----------EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred             cCCCCCcEEEEEECCEECCCceE-----------EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence            999999 6999999988754321           1356899999999999999999999999999999999988764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=8.9e-36  Score=277.62  Aligned_cols=328  Identities=15%  Similarity=0.159  Sum_probs=229.4

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCcc
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDYP  103 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~  103 (384)
                      .+..+|+|.+++.+|+|.|.|.+.+........       .......+|.+...+....+.+|+.++|.|.+.+. +...
T Consensus        72 ~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~-------~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~  144 (585)
T 2ocw_A           72 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD-------VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKR  144 (585)
T ss_pred             CCEEEEEECCCCcccCEEEEEEcccCCCCceEE-------EEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCcc
Confidence            445689999999999999999987653321110       01112345677777888889999999999999864 4678


Q ss_pred             EEEEEeCCCCCCcccceecc-CceeeeCCceEEeeCC-CCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        104 VIWMKMDTAKKMEPLPISMS-GSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       104 v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      +.|++++.....  ...... .......+++.+..+. ..+..+|.|.+++.+|+|.|+|.+.+.. +..+..+.|.|..
T Consensus       145 v~W~k~~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~  221 (585)
T 2ocw_A          145 KSLYKQIGLYPV--LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDS-NSNKKNADLQVLK  221 (585)
T ss_pred             EEEEECCCCCce--EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCC-ccccceEEEEEcc
Confidence            999998754210  011100 0111123556555432 3455689999999999999999998543 4466777888875


Q ss_pred             CCccccCCCceEEeecCceEEEEEEecccC-C-CeEEEE-eCCCc---ccc---------cCceeEe----cc--EEEEc
Q psy16652        182 PPIISDNSTRSVIVSEGQTVYLYCYANGFP-A-PTISWR-RDNSA---ALS---------TGGSIYR----GN--ILKIP  240 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~-~~v~W~-~~~~~---~~~---------~~~~~~~----~~--~l~i~  240 (384)
                      ++      +....+.+|+.+.|.|.+.+.+ . +.+.|+ +++..   +..         .......    .+  .|.|.
T Consensus       222 ~~------p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~  295 (585)
T 2ocw_A          222 PE------PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVIT  295 (585)
T ss_pred             CC------CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEc
Confidence            43      3345678999999999974322 2 678897 77632   111         1111111    22  79999


Q ss_pred             CCCCCCCeEEEEEEEeCCCCce----eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeE----EEEE--C
Q psy16652        241 NITKTDRGTYYCVAQNGVGRGM----KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI----VWIK--D  310 (384)
Q Consensus       241 ~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v----~W~~--~  310 (384)
                      +++.+|+|.|+|.|.|. +...    ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+    .|++  +
T Consensus       296 ~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~  374 (585)
T 2ocw_A          296 GLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN  374 (585)
T ss_pred             cCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCC
Confidence            99999999999999995 3332    2778899999998877777778889999999999999999976    7999  8


Q ss_pred             CE--EecCC---------CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        311 GV--QIMNN---------QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       311 ~~--~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      |.  .+...         .++.+...   ......+|.|.+++.+|+|.|+|.| |..|.....+.|.|...++
T Consensus       375 g~~~~l~~~~~~~~~~~~~r~~~~~~---~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p  444 (585)
T 2ocw_A          375 GRCPLLVDSEGWVKAQYEGRLSLLEE---PGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEP  444 (585)
T ss_pred             CCCceeeeecceeecccCCCEEEecc---CCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcc
Confidence            86  44322         22222210   0112235999999999999999999 9999999999999987543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=6.9e-36  Score=253.60  Aligned_cols=268  Identities=16%  Similarity=0.188  Sum_probs=204.5

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.|...+....+.+|++++|.|.+.+    .+.|++++...                   +....  .  ...|.|.
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-------------------~~~~~--~--~~~L~i~   62 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-------------------EMVEN--K--KNEWIQE   62 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS-------------------CEEEE--C--SSEEEET
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce-------------------eeecC--C--CceEEEe
Confidence            56788888888888999999999999876    89999988652                   00001  1  1479999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC-CeEEEE-eCCCccccc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWR-RDNSAALST  227 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~-~~~~~~~~~  227 (384)
                      +++.+|+|.|+|.+.+   + .+..+.|.|..++... .......+.+|+.+.|.|.+.+ |. +.+.|+ +++..+...
T Consensus        63 ~~~~~d~G~Y~C~~~n---g-~~~~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~  136 (290)
T 2o26_X           63 KAEATRTGTYTCSNSN---G-LTSSIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD  136 (290)
T ss_dssp             TCCGGGCEEEEEEESS---S-CEEEEEEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT
T ss_pred             ccCHHhCeEEEEEeeC---C-ccEEEEEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC
Confidence            9999999999999975   3 2677888888777655 4456677889999999999986 77 899995 566655443


Q ss_pred             Ccee-EeccEEEEcCCCCCCCe-EEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652        228 GGSI-YRGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP  301 (384)
Q Consensus       228 ~~~~-~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  301 (384)
                      .... .....|.|.+++.+|+| .|+|.+.|..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus       137 ~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p  216 (290)
T 2o26_X          137 LTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS  216 (290)
T ss_dssp             CEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred             CceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence            3322 23468999999999999 99999999855444556777776    788888777777899999999999999999


Q ss_pred             CCe-EEEEECCEEe----cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        302 PPA-IVWIKDGVQI----MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       302 ~~~-v~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .|. +.|++++..+    .......+.  ........+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.++|
T Consensus       217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          217 TSVNSMWLKMNPQPQHIAQVKHNSWHR--GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             TTCEEEEEEESSSEEECCCEECCEEEE--ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             cceeEEEecCCCCCccceeeccccccc--CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            996 9999998763    222221111  00011235689999999999999999999999999999999998764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=7.8e-36  Score=274.18  Aligned_cols=338  Identities=12%  Similarity=0.104  Sum_probs=216.4

Q ss_pred             CCCcchhccccCCCCCCC----CCCCC----ceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652          4 PSPFDFVNRFQNTSTPWD----PSTQK----PIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI   75 (384)
Q Consensus         4 ~~~~w~~~~~~~~~~~~~----~~~~~----~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   75 (384)
                      +.+.|++|+.++......    ....+    ..+|.|.+++.+|+|.|.|.+.+..........+   ........+|.+
T Consensus       146 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~---~~~~~~~~~P~v  222 (523)
T 2rcj_C          146 VTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP---TECSASTKGPSV  222 (523)
T ss_pred             eEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceee---eecCCCCcCCEE
Confidence            389999998766532210    00111    1369999999999999999998863322111110   011123455666


Q ss_pred             eeeCcceeeeccCcEEEEEEeecC-CCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYA-DDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      ........+.+|+.+.|.|.+.+. |.+ .+.|++++......     ........++.|..       ...|.|.+++.
T Consensus       223 ~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~-----~~~~~~~~~g~~~~-------~s~L~i~~~~~  290 (523)
T 2rcj_C          223 FPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVH-----TFPAVLQSSGLYSL-------SSVVTVPSSSL  290 (523)
T ss_pred             EecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceE-----eCCcEecCCCcEEE-------EEEEEechhhc
Confidence            644445557899999999999885 655 89999988652110     00000111222222       34799999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE-eecCceEEEEEEecccCC----CeEEEEeCCCcccccC
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI-VSEGQTVYLYCYANGFPA----PTISWRRDNSAALSTG  228 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~~  228 (384)
                      +| |.|+|.+.|..+. ......|.+...|.+....+.... +.+|+.+.|.|.+.|.++    +.+.|++++..+....
T Consensus       291 ~d-G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~  368 (523)
T 2rcj_C          291 GT-QTYICNVNHKPSN-TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAK  368 (523)
T ss_pred             CC-ceEEEEEEeCCCC-cceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCc
Confidence            99 9999999976544 344455555444544333233232 788999999999988543    4899999998765432


Q ss_pred             c---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE----EEecCeEEecCCCcccccCCcEEEEE
Q psy16652        229 G---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE----VEFAPVITINRPRQGQALQYDAILEC  295 (384)
Q Consensus       229 ~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C  295 (384)
                      .         .....+.|.|.++..+|+|.|+|.|.|..+.. .....+.    +..+|.+...+.......++.+.|.|
T Consensus       369 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C  447 (523)
T 2rcj_C          369 TKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTC  447 (523)
T ss_pred             cCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC-ceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEE
Confidence            1         11223468899999999999999999876654 2233343    45678776654443333455599999


Q ss_pred             EEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        296 HVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       296 ~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      .+.|.|++  .+.|+++|.++.............+.....+.|.+.....+|.|.|+|.|.|....
T Consensus       448 ~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l~  513 (523)
T 2rcj_C          448 LVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  513 (523)
T ss_pred             EEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCcC
Confidence            99997666  89999999988644332222222221122334556666667899999999998653

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=100.00  E-value=1.9e-35  Score=250.84  Aligned_cols=274  Identities=18%  Similarity=0.224  Sum_probs=204.7

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|++++|.|.+.+    .+.|++++...                   ....  .......|.|.+
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-------------------~~~~--~~~~~~~L~i~~   57 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPY-------------------WTLD--PESPGSTLTTRN   57 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSS-------------------SEEC--CCSSCCEEEESS
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCce-------------------EEEe--ccCCccEEEEee
Confidence            4677777778888999999999999876    59999755321                   0111  123345799999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCC-cccccC
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNS-AALSTG  228 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~-~~~~~~  228 (384)
                      ++.+|+|.|+|.+.+..+ ..+..+.|.|..++......+....+.+|+.+.|.|.+.+.+.+. +.|++.+. .+....
T Consensus        58 ~~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~  136 (289)
T 3ejj_X           58 ATFKNTGTYRCTELEDPM-AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT  136 (289)
T ss_dssp             CCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTC
T ss_pred             eccccCEEEEEEEeccCC-cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCc
Confidence            999999999999875444 367778888887776444445777899999999999998866654 99987443 333332


Q ss_pred             cee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCC
Q psy16652        229 GSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPP  302 (384)
Q Consensus       229 ~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~  302 (384)
                      ... ..+..|.|.+++.+|+|.|+|.+.+......+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+ .|.
T Consensus       137 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~  216 (289)
T 3ejj_X          137 VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG  216 (289)
T ss_dssp             CEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC
T ss_pred             cEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc
Confidence            222 3456899999999999999999996444334667888887    6788888777777789999999999998 788


Q ss_pred             CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       303 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +.+.|++++..+........   ..........|.|.+++.+|.|.|+|.|.|..|+.++++.|.+...+.
T Consensus       217 ~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          217 FNVILKRGDTKLEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             CEEEEEETTEECCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             eEEEEEECCEEeeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            99999999998865433221   111122367899999999999999999999999999999999877754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=100.00  E-value=2.1e-35  Score=255.57  Aligned_cols=290  Identities=18%  Similarity=0.300  Sum_probs=210.7

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEE
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYI  145 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  145 (384)
                      +.+...+..+.+.+|++++|.|.+.+.    +...+.|++++................   ....+|+.+. .......+
T Consensus        15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~   93 (331)
T 3u83_A           15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGT   93 (331)
T ss_dssp             ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBCC
T ss_pred             cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCce
Confidence            344455667789999999999998775    445799999664321111111111111   1134566665 23445667


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc-CCCceEEeecC---ceEEEEEE-ecccCCCeEEEEeC
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD-NSTRSVIVSEG---QTVYLYCY-ANGFPAPTISWRRD  220 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g---~~~~l~C~-~~~~~~~~v~W~~~  220 (384)
                      |.|.+++.+|+|.|+|.+.+...+.....+.|.|..+|.... .......+.+|   +.+.|.|. +.+.|.+.+.|+++
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            999999999999999997666666677888899988776532 23455678888   88999998 78889999999996


Q ss_pred             CCcccc------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecC-CCcccccCCcEEE
Q psy16652        221 NSAALS------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINR-PRQGQALQYDAIL  293 (384)
Q Consensus       221 ~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l  293 (384)
                      +.....      ..........|.|..+..+|+|.|+|.+.|..+.. +..+.|.|..+|.+.+.+ ....+..|+.+.|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l  252 (331)
T 3u83_A          174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL  252 (331)
T ss_dssp             SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE-EEEEECCEEEEEEEEEECCCSCCBTTCCCEEE
T ss_pred             CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc-eeeEEEEEecCCeEEEecCCCceEeCCCeEEE
Confidence            433221      11222234578999999999999999999987764 778889999999877544 3455788999999


Q ss_pred             EEEEeccCCCe-EEEEECCEEecCCCceeeeeeeccCccccceEEEe-ecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        294 ECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI-TIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       294 ~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .|.+.|.|.|. +.|++++..+.....  .         ...+|.|. +++.+|.|.|+|.|.|..|....++.|.|...
T Consensus       253 ~C~~~g~p~p~~i~W~~~~~~~~~~~~--~---------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  321 (331)
T 3u83_A          253 TCKADANPPATEYHWTTLNGSLPKGVE--A---------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA  321 (331)
T ss_dssp             EEEEEEESCCCEEEEEETTBSCCTTEE--E---------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-
T ss_pred             EEeCcCCCCCCEEEEEECCCcccccce--e---------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEecc
Confidence            99999999998 999999988754421  1         35689999 89999999999999999999999999999887


Q ss_pred             ecCC
Q psy16652        372 QTGD  375 (384)
Q Consensus       372 ~~~~  375 (384)
                      +...
T Consensus       322 ~~~~  325 (331)
T 3u83_A          322 AALE  325 (331)
T ss_dssp             ----
T ss_pred             chhh
Confidence            6543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=100.00  E-value=6.9e-36  Score=255.87  Aligned_cols=283  Identities=17%  Similarity=0.247  Sum_probs=205.0

Q ss_pred             cceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      +.+.+.+|++++|.|.+.+. +...+.|+|.+..................   ..+|+.+.. ......+|.|.+++.+|
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKN-YSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESC-CSSSBCCEEECSCCGGG
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeec-cCCCceEEEEccCCHHH
Confidence            35678899999999998654 45679999987653222111111111111   123444332 13445689999999999


Q ss_pred             CeeEEEEEEEccCcceeeeEEEEEecCCcccc-CCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc----
Q psy16652        156 AGIYKCEVIISLNNKVSAEVELIVRRPPIISD-NSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG----  229 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~----  229 (384)
                      +|.|+|.+.+...+..+..+.+.+...+.... ..+.......|+.+.|.|.+ .+.|.+.+.|++++..+.....    
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            99999999877666677777777776654332 22333445678899999986 6789999999999887654321    


Q ss_pred             -eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCC-cccccCCcEEEEEEEeccCCC-eE
Q psy16652        230 -SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPR-QGQALQYDAILECHVEAYPPP-AI  305 (384)
Q Consensus       230 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~-~v  305 (384)
                       .....+.|.|..+..+|+|.|+|.|.|..+.. .+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+.|.|+| .+
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v  245 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS  245 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence             12233579999999999999999999976654 355677788888887665544 445677899999999999998 69


Q ss_pred             EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .|++++..+......          .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus       246 ~W~k~~~~~~~~~~~----------~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          246 VWSRLDGQWPDGLLA----------SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             ECCBSSSCCCSSCBC----------STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEEECCeECCCcEEE----------cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            999999877543211          1244566788999999999999999999999999999998875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=264.40  Aligned_cols=311  Identities=13%  Similarity=0.193  Sum_probs=179.6

Q ss_pred             ecceEEEEEEEeeec--cchhHH-HHHHHH------HhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEE
Q psy16652         36 TGEKVTSVILLFKMS--VAGPSI-IVALSF------LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIW  106 (384)
Q Consensus        36 ~~~d~G~y~c~~~~~--~~~~~~-~~~~~~------~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W  106 (384)
                      +-.|.|.|.|.+...  +..... ......      .+.....+..+.+...+..+.|.+|+++.|.|.+.+.|.+.+.|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W   82 (423)
T 3qs7_E            3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW   82 (423)
T ss_dssp             -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred             ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence            346889999997764  221111 111100      01111112223455556678899999999999999988889999


Q ss_pred             EEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccc
Q psy16652        107 MKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS  186 (384)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~  186 (384)
                      ++++.....              ...+  .. ......+|.|.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|...
T Consensus        83 ~~~~~~l~~--------------~~~~--~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~~p~~~  144 (423)
T 3qs7_E           83 VFKHSSLNC--------------QPHF--DL-QNRGVVSMVILKMTETQAGEYLLFIQSEA-TNYTILFTVSIRNTLLYT  144 (423)
T ss_dssp             EETTEEECC--------------CCBC--------CEEEEEESSCCSSSCSEEEEEEEC---CEEEEEEEEEEC-----C
T ss_pred             EECCCccCc--------------ccee--cc-ccceEEEEEEeecCcccCEEEEEEEEcCC-CcEEEEEEEEEecCcccc
Confidence            997643110              0000  00 01223469999999999999999998654 456667788887665442


Q ss_pred             cCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       187 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      .  .....+..|+.+.|.|.+.|.|.|.+.|++++......... .......... +..+|+|.|+|.|.|..|......
T Consensus       145 ~--~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~  221 (423)
T 3qs7_E          145 L--RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL  221 (423)
T ss_dssp             E--EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSCEEEEEECSSCEEEEEC
T ss_pred             c--cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-ccccccccceEEecccCeEEEEEEEcCCCCcceee
Confidence            1  22334567888899999999999999999987644221100 0001111111 157899999999999988765555


Q ss_pred             EEEEEEecCeEEecCCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeecc-CccccceEEEeecCC
Q psy16652        266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATS-DEFSDTSLRVITIER  343 (384)
Q Consensus       266 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~  343 (384)
                      +.|.|..+|.+  .+....+.+|+.+.|.|.+.| .|.|.+.|+++|..+.....+........ .......|.|.+++.
T Consensus       222 ~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  299 (423)
T 3qs7_E          222 FTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR  299 (423)
T ss_dssp             EEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCT
T ss_pred             EEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCH
Confidence            67777666654  344567889999999999998 67789999999988755433222111111 012345799999999


Q ss_pred             CCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        344 RQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      +|+|.|+|.|.|.   ...++.|.|.++|
T Consensus       300 ~D~G~Y~C~A~N~---~~~~~~L~V~~~p  325 (423)
T 3qs7_E          300 NDTGYYTCSSSKH---PSQSALVTIVEKG  325 (423)
T ss_dssp             TTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred             HHCEEEEEEEecC---CCceEEEEEEeCC
Confidence            9999999999998   6667777776654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=5.1e-39  Score=309.14  Aligned_cols=361  Identities=19%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             CCCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeee--
Q psy16652          1 FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYI--   78 (384)
Q Consensus         1 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--   78 (384)
                      +|.+.+.|++|+..+....   .......|.|.+++.+|+|.|+|.+.+..+.......+.+.     ...+|.+...  
T Consensus       357 ~p~~~v~W~~~g~~l~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~-----v~~~P~~~~~~~  428 (772)
T 3v2a_R          357 YPPPEIKWYKNGIPLESNH---TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV-----VYVPPQIGEKSL  428 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eCCCeEEEEECCEeCCCCc---eEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEE-----EecCCccccccc
Confidence            4678899999976654311   11245899999999999999999998764432211111111     1123333211  


Q ss_pred             -CcceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCccc----------------cee-c--cCceeeeCCceEEee
Q psy16652         79 -SQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPL----------------PIS-M--SGSLIIHDSRFQLTT  137 (384)
Q Consensus        79 -~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~----------------~~~-~--~~~~~~~~~~~~~~~  137 (384)
                       .....+.+|+.++|.|.+.+.|.+. +.|++++.+......                .+. .  +........++.+..
T Consensus       429 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~  508 (772)
T 3v2a_R          429 ISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE  508 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeecc
Confidence             1222378999999999998888775 999997543110000                000 0  000000111222212


Q ss_pred             CCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEE
Q psy16652        138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISW  217 (384)
Q Consensus       138 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W  217 (384)
                      ........|.|.++  +|+|.|+|.+.|..+ ..+..+.|.|..+|.+...  +...+.+|+.+.|.|.+.+.|.+.+.|
T Consensus       509 ~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~i~~~--p~~~~~~G~~v~l~C~~~~~p~~~v~W  583 (772)
T 3v2a_R          509 GKNKTVSTLVIQAA--NVSALYKCEAVNKVG-RGERVISFHVTRGPEITLQ--PDMQPTEQESVSLWCTADRSTFENLTW  583 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcceEEEEEEEeec--ccCeEEEEEEEcccc-ccceeEEEEEECCceeecc--CCcccccCCceEEEEeccCCCCCCcEE
Confidence            11223357888877  799999999986554 4556677777776655432  224477999999999999999899999


Q ss_pred             EeCCCcccccCcee------------------------EeccEEEEcCCCCCCCeEEEEEEEeCCCCc-e--eeEEEEEE
Q psy16652        218 RRDNSAALSTGGSI------------------------YRGNILKIPNITKTDRGTYYCVAQNGVGRG-M--KRNIAVEV  270 (384)
Q Consensus       218 ~~~~~~~~~~~~~~------------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~~l~v  270 (384)
                      ++++..+.......                        .....|.|.+++.+|+|.|+|.|.|..+.. .  ...+.+.+
T Consensus       584 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~  663 (772)
T 3v2a_R          584 YKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE  663 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc
Confidence            99886543221100                        012249999999999999999999954432 2  22344444


Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.|.|+++|..+..+.++.+..       ...+|.|.+++.+|+|.|+
T Consensus       664 ~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~  736 (772)
T 3v2a_R          664 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-------GNRNLTIRRVRKEDEGLYT  736 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC-------CCcEEEECcCCHHHCEEEE
Confidence            678888777777788999999999999999999999999999987766544331       3578999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeeecCCccCCcc
Q psy16652        351 CKAANKYGSAQKEIELFDRETQTGDETFPIF  381 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~  381 (384)
                      |.|.|..|..+.++.|.|.++|.....+..|
T Consensus       737 C~a~N~~G~~~~~~~l~V~~~p~~~~~~~~~  767 (772)
T 3v2a_R          737 CQACSVLGCAKVEAFFIIEGAQEKTNLERTH  767 (772)
T ss_dssp             -------------------------------
T ss_pred             EEEEeCCcceeEEEEEEEECCCCcccccccc
Confidence            9999999999999999999998765544433

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=8.4e-36  Score=268.93  Aligned_cols=313  Identities=14%  Similarity=0.182  Sum_probs=207.2

Q ss_pred             CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHH--H--Hhhhh-cccCCCCeeeeC
Q psy16652          5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALS--F--LISLA-SSQRTPTISYIS   79 (384)
Q Consensus         5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~--~--~~~~~-~~~~~p~~~~~~   79 (384)
                      .+.|++|+.++..... .....+.+|.|.+++.+|+|.|.|.+.+..+.........  .  .+... .+..+|.+..  
T Consensus       120 ~v~W~k~g~~l~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~--  196 (450)
T 1z7z_I          120 TVVLLRGEKELKREPA-VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--  196 (450)
T ss_dssp             EEEEEETTEEEEEEEC-CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC--
T ss_pred             EEEEeeCCEEeecccc-cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC--
Confidence            7899999876653331 1234567999999999999999999987633211000000  0  00000 0012232221  


Q ss_pred             cceeeeccCcEEEEEEeecC-C--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYA-D--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                       ...+.+|+.+.|.|.+.+. |  .+.+.|++++.....                ++....  +.....+.+ +++.+|+
T Consensus       197 -~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~----------------~~~~~~--~~~~~~~~~-~v~~~d~  256 (450)
T 1z7z_I          197 -PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----------------TVTYGN--DSFSAKASV-SVTAEDE  256 (450)
T ss_dssp             -CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC----------------EEEEET--TEEEEEEEE-ECCGGGC
T ss_pred             -ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc----------------eEEecC--CceeEEEEE-EeEhhhC
Confidence             1568999999999999987 6  689999998764211                111111  111112233 7899999


Q ss_pred             e--eEEEEEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE
Q psy16652        157 G--IYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY  232 (384)
Q Consensus       157 G--~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~  232 (384)
                      |  .|+|.+.+.. +.......|.|..  +|.+.   .....+.+|+.+.|.|.+.  |.+.+.|  ++..+....    
T Consensus       257 G~~~Y~C~a~n~~-g~~~~~~~l~V~~~~~p~i~---~~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~----  324 (450)
T 1z7z_I          257 GTQRLTCAVILGN-QSQETLQTVTIYSFPAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----  324 (450)
T ss_dssp             EEEEEEEEEEETT-EEEEEEEEEEEECCCCCEEE---ESCSEEETTCEEEEEEEC--------------------C----
T ss_pred             CcEEEEEEEccCC-ccEEEEEEEEEecCCCCeEe---cCCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCC----
Confidence            9  9999998654 4455567777776  34333   2234689999999999997  7889999  565542211    


Q ss_pred             eccEEEEcCCCCCCCeEEEEEEEeCCC-Cc--eeeEEEEEEEecCeEEecC--CCcccccCCcEEEEEEEeccCCCeEEE
Q psy16652        233 RGNILKIPNITKTDRGTYYCVAQNGVG-RG--MKRNIAVEVEFAPVITINR--PRQGQALQYDAILECHVEAYPPPAIVW  307 (384)
Q Consensus       233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~--~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~v~W  307 (384)
                      ....|.|..+..+|+|.|+|.|.|..+ ..  ....+.|.|.++|.+....  ....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus       325 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W  404 (450)
T 1z7z_I          325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKC  404 (450)
T ss_dssp             CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEE
T ss_pred             ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEE
Confidence            234799999999999999999997554 32  2467888899999876654  445788999999999999999999999


Q ss_pred             EECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +++|..+...               ...+   .++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       405 ~~~g~~~~~~---------------g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          405 LKDGTFPLPI---------------GESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             EETTTEECCT---------------TSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EECCcccCCC---------------CCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence            9998743222               1122   5788999999999999999999999999875

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=5.1e-36  Score=257.81  Aligned_cols=277  Identities=17%  Similarity=0.210  Sum_probs=196.6

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ...+|.+.. +....+.+|++++|.|.+.+. +.+.+.|++++...              ....++.+.    .+...|.
T Consensus         4 ~~~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~----~~~~~L~   64 (317)
T 2y25_A            4 PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--------------SVDEKHDFK----DGICTLL   64 (317)
T ss_dssp             SSSCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE--------------CCSCC---------CCEEEE
T ss_pred             ccCCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEc--------------CCCCcEEEE----CCeEEEE
Confidence            345677775 445789999999999999886 67899999976541              122333322    3346899


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc----------cCCCeEEE
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG----------FPAPTISW  217 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~v~W  217 (384)
                      |.+++.+|+|.|+|.+.+.. +.....+.|.|..++..... .....+.+|+.+.|.|.+.+          .|.+.+.|
T Consensus        65 i~~~~~~d~G~Y~C~~~n~~-g~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W  142 (317)
T 2y25_A           65 ITEFSKKDAGIYEVILKDDR-GKDKSRLKLVDEAFKELMME-VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW  142 (317)
T ss_dssp             ETTCCSTTCSCEEEEEESSS-CEEEEEECCSTHHHHHHHHH-HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEE
T ss_pred             EccCCcccCeEEEEEEECCC-CcEEEEEEEEEecCcccccc-CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEE
Confidence            99999999999999997544 33444444444332221110 11122345555665555544          67889999


Q ss_pred             EeCCCcccccCceeEe----ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe--------------------c
Q psy16652        218 RRDNSAALSTGGSIYR----GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF--------------------A  273 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~  273 (384)
                      ++++..+.........    ...|.|.+++.+|+|.|+|.+.|..+.. ...+.+.+..                    .
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T 2y25_A          143 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR  221 (317)
T ss_dssp             EESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             EECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEeeeeccccchhhcccCCcccCcCCC
Confidence            9999887655443322    1359999999999999999999977764 4555555431                    2


Q ss_pred             CeEEe-cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        274 PVITI-NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       274 p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      |.+.. .+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+...    ......|.|.+++.+|+|.|+|.
T Consensus       222 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~  297 (317)
T 2y25_A          222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFE----AGRTAYFTINGVSTADSGKYGLV  297 (317)
T ss_dssp             CEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCB----TTTEEEEEEBSCCSTTCEEEEEE
T ss_pred             CcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEc----CCCEEEEEECCCCHHHCEEEEEE
Confidence            33333 34446788999999999999999999999999999987776655421    01235899999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeee
Q psy16652        353 AANKYGSAQKEIELFDRET  371 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~~  371 (384)
                      |.|..|..+.++.|.|..|
T Consensus       298 a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          298 VKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EEETTEEEEEEEEEEEECC
T ss_pred             EEeCCCeEEEEEEEEEEcC
Confidence            9999999999999998743

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=100.00  E-value=7.6e-35  Score=253.87  Aligned_cols=282  Identities=18%  Similarity=0.252  Sum_probs=173.5

Q ss_pred             CcceeeeccCcEEEEEEeecCC-----------CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD-----------DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ...+.+.+|+++.|.|.+.+.|           .+.+.|++++....... .+..    .....++....      ..|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~-~~~~----~~~~~~~~~~~------~~L~   82 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINF----RLPENRISKEK------DVLW   82 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEE-ECCC----CCGGGCEEEET------TEEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccc-cccc----cccCceEeecC------CEEE
Confidence            4456689999999999998654           48999999885321000 0000    00112222221      2699


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccC---CCceEEeecCceEEEEEEe-----cccCCCeEEEEe
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN---STRSVIVSEGQTVYLYCYA-----NGFPAPTISWRR  219 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~---~~~~~~~~~g~~~~l~C~~-----~~~~~~~v~W~~  219 (384)
                      |.+++.+|+|.|+|.+.+. .+.....+.|.|..++.....   .+....+.+|+.+.|.|.+     .+.|.+.+.|++
T Consensus        83 i~~~~~~D~G~Y~C~a~n~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k  161 (349)
T 4dep_C           83 FRPTLLNDTGNYTCMLRNT-TYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM  161 (349)
T ss_dssp             ESSCCGGGCEEEEEEEECS-SCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE
T ss_pred             EccCChhhCEEEEEEEecC-CceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee
Confidence            9999999999999999854 344556777888766543321   1335578899999999985     667889999999


Q ss_pred             CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCC-CCc--eeeEEEEEEEe------cCeEEecCCCc--ccccC
Q psy16652        220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV-GRG--MKRNIAVEVEF------APVITINRPRQ--GQALQ  288 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g  288 (384)
                      ++..+.........+..|.|.+++.+|+|.|+|.+.|.. +..  .+..+.|.|..      +|.+.......  .+..|
T Consensus       162 ~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G  241 (349)
T 4dep_C          162 GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPG  241 (349)
T ss_dssp             TTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------------
T ss_pred             CCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecC
Confidence            998775544455566789999999999999999999976 332  25667777766      56665444332  67889


Q ss_pred             CcEEEEEEEe----ccCCCeEEEEECCEEecC-CCceeeeeeec----cCccccceEEEeecCCCCC-eEEEEEEEeCCc
Q psy16652        289 YDAILECHVE----AYPPPAIVWIKDGVQIMN-NQHYSVSHFAT----SDEFSDTSLRVITIERRQF-GQYACKAANKYG  358 (384)
Q Consensus       289 ~~~~l~C~~~----~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g  358 (384)
                      +.+.|.|.+.    +.|.|.+.|+++|..+.. ..++.......    ........|.|.+++.+|. |.|+|.|.|..|
T Consensus       242 ~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  321 (349)
T 4dep_C          242 EELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG  321 (349)
T ss_dssp             ---CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSC
T ss_pred             CcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCC
Confidence            9999999998    578899999999988865 33333322111    1111245699999999999 999999999999


Q ss_pred             ceEEEEEEEEeeee
Q psy16652        359 SAQKEIELFDRETQ  372 (384)
Q Consensus       359 ~~~~~~~l~v~~~~  372 (384)
                      ....++.|.|..++
T Consensus       322 ~~~~~~~l~v~~~~  335 (349)
T 4dep_C          322 EVAKAAKVKQKVPA  335 (349)
T ss_dssp             EEEEECC-------
T ss_pred             cEEEEEEEeeecCC
Confidence            99999999987643

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=7.2e-34  Score=252.67  Aligned_cols=281  Identities=22%  Similarity=0.330  Sum_probs=213.5

Q ss_pred             cccCCCCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         68 SSQRTPTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        68 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      .......+...|.+..+.+|++++|.|.+.+ .+.+.+.|++++.....            ....++....+     ..|
T Consensus        17 ~~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------------~~~~~~~~~~~-----~~l   79 (403)
T 3laf_A           17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL------------GMDDRKQQLPN-----GSL   79 (403)
T ss_dssp             --CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCT------------TSCTTEEECTT-----SCE
T ss_pred             CCceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECcc------------CCcccEEEecC-----CcE
Confidence            3455667788889999999999999999987 46778999997754210            01223322221     146


Q ss_pred             EEeec-----CCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeC
Q psy16652        147 SIKEI-----QETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD  220 (384)
Q Consensus       147 ~i~~~-----~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~  220 (384)
                      .|.++     +.+|+|.|+|.+.+...+ ..+..+.|.|..++.+.. .+....+.+|+++.|.|.+.+.|.+.+.|+++
T Consensus        80 ~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~-~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~  158 (403)
T 3laf_A           80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKN  158 (403)
T ss_dssp             EECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECS-CCCCEEEETTSCEEECCCEECSSCCEEEEEES
T ss_pred             EEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCcccc-CCCcEEEEcCCeEEEEEEEcccCCCeEEEEEC
Confidence            67666     778999999999865433 346677888887776653 35567789999999999998888899999999


Q ss_pred             CCcccccC---c-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe------EEecCCCcccccCCc
Q psy16652        221 NSAALSTG---G-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV------ITINRPRQGQALQYD  290 (384)
Q Consensus       221 ~~~~~~~~---~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~  290 (384)
                      +..+....   . ....+..|.|.+++.+|+|.|+|.+.|..+...+..+.+.|...|.      +...+....+.+|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~  238 (403)
T 3laf_A          159 QQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD  238 (403)
T ss_dssp             SSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSC
T ss_pred             CEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCc
Confidence            88764221   1 1223568999999999999999999998776555667777776653      333455667789999


Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +.|.|.+.+.|.+.+.|++++..+..........       ....|.|.+++.+|.|.|+|.|.|..|....++.|.|..
T Consensus       239 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  311 (403)
T 3laf_A          239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL-------GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV  311 (403)
T ss_dssp             EEECCEEEEESCCEEEEEETTEECCCSSSSEEEE-------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC-------CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC
Confidence            9999999999999999999999886544322211       356899999999999999999999999999999999988


Q ss_pred             eec
Q psy16652        371 TQT  373 (384)
Q Consensus       371 ~~~  373 (384)
                      +|.
T Consensus       312 ~p~  314 (403)
T 3laf_A          312 PPW  314 (403)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            753

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=2.7e-36  Score=271.32  Aligned_cols=324  Identities=17%  Similarity=0.219  Sum_probs=207.4

Q ss_pred             CceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeec-CCCc-c
Q psy16652         26 KPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQY-ADDY-P  103 (384)
Q Consensus        26 ~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~  103 (384)
                      +..+|.|.+++.+|+|.|.|.+...........   ..+.......+|.+...+....+.+|+.+.|.|.+.+ .|.+ .
T Consensus        73 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~---~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~  149 (438)
T 1qgc_4           73 TDFTLTIDPVEADDVATYYCQQSNEVPLTFGAG---TKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN  149 (438)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEECSSTTCCBCCC---EEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEE
T ss_pred             CcEEEEeCCCcCcCCeeEEEEEecCCCccccCc---eeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcE
Confidence            456899999999999999999987532110000   0001112224666666554444557889999999977 4555 8


Q ss_pred             EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC-
Q psy16652        104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP-  182 (384)
Q Consensus       104 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-  182 (384)
                      +.|++++..........  .......+..|..       ...|.|.+++.+|+|.|+|.+.+..+..   .+.+.+... 
T Consensus       150 v~W~k~g~~~~~~~~~~--~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~  217 (438)
T 1qgc_4          150 VKWKIDGSERQNGVLNS--WTDQDSKDSTYSM-------SSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNE  217 (438)
T ss_dssp             EEEEETTEEECTTEEEE--EECCCTTTCCEEE-------EEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC
T ss_pred             EEEEECCEEcCCCceec--cccccCCCCcEEE-------EEEEEEeCcccCCCCeEEEEEEecccCC---ceeccccccc
Confidence            99999775421110000  0000001122222       3479999999999999999998755432   233333321 


Q ss_pred             CccccCCCceEEeecCceEEEEEEecccC--CCeEEEEeC--CCcccc-----------------cCceeEe------cc
Q psy16652        183 PIISDNSTRSVIVSEGQTVYLYCYANGFP--APTISWRRD--NSAALS-----------------TGGSIYR------GN  235 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~-----------------~~~~~~~------~~  235 (384)
                      +......+....+.+|+.+.|.|.+.+.|  .+.+.|+++  +..+..                 ..+....      ..
T Consensus       218 ~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  297 (438)
T 1qgc_4          218 CEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTL  297 (438)
T ss_dssp             -CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEE
T ss_pred             ceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeE
Confidence            11111123456789999999999999877  568999996  432210                 1111111      23


Q ss_pred             EEEEcCCCCCCCeEEEEEEEeCCCC----ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eE
Q psy16652        236 ILKIPNITKTDRGTYYCVAQNGVGR----GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AI  305 (384)
Q Consensus       236 ~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v  305 (384)
                      .|.|.+++.+|+|.|+|.|.|..+.    .......+.|.    .+|.+...++...+..|+.++|.|.+.|. |.+ .|
T Consensus       298 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  377 (438)
T 1qgc_4          298 YLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTV  377 (438)
T ss_dssp             EEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEE
T ss_pred             EEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEE
Confidence            8999999999999999999984331    11233456665    35666555555567789999999999997 887 99


Q ss_pred             EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .|+++|..+.........  ..+.....+.|+|..+..+| |.|+|.|.|..|.......|.
T Consensus       378 ~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          378 TWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             EEGGGTCCSSEEECCCEE--ETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEecCCCCCceeecCccc--cCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence            999999876432111111  11111223568999999889 999999999999877666554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=100.00  E-value=1.8e-34  Score=249.17  Aligned_cols=273  Identities=17%  Similarity=0.210  Sum_probs=198.2

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecC---------CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCce
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYA---------DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETST  143 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (384)
                      ...........+.+|+++.|.|.+.+.         +.+.+.|++++....              ...+. ..      .
T Consensus        30 ~c~~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~--------------~~~~~-~~------~   88 (329)
T 3oq3_B           30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR--------------PLNRR-VK------N   88 (329)
T ss_dssp             TSEEEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCE--------------ECSTT-EE------T
T ss_pred             CcccCCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCcc--------------ccCce-ee------c
Confidence            344455567779999999999998773         557899999886521              11111 11      2


Q ss_pred             EEEEEeecCCCCCe-eEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccC-CCeEEEEeCC
Q psy16652        144 YILSIKEIQETDAG-IYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRRDN  221 (384)
Q Consensus       144 ~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~  221 (384)
                      .+|.|.+++.+|+| .|+|.+.+..+......+.+.+..+|.... ......+.+|+.+.|.|.+.+.| .+.+.|++++
T Consensus        89 ~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~-~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~  167 (329)
T 3oq3_B           89 GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP-ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN  167 (329)
T ss_dssp             TEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEE-EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETT
T ss_pred             ceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEec-cccceEEeCCCcEEEEeccCCCCCCceEEEEECC
Confidence            37999999999999 999999876544333333344444444221 11122356799999999999988 8999999999


Q ss_pred             Cccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeC--CCCc---eeeEEEEEEEecC----eEEecCCCcccccCCcE
Q psy16652        222 SAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNG--VGRG---MKRNIAVEVEFAP----VITINRPRQGQALQYDA  291 (384)
Q Consensus       222 ~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~---~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~  291 (384)
                      ..+... ......+..|.|.+++.+|+|.|+|.+.|.  .+..   .+..+.|.|..+|    .+. .+....+..|+.+
T Consensus       168 ~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~  246 (329)
T 3oq3_B          168 QELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPA  246 (329)
T ss_dssp             EECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCE
T ss_pred             ccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCE
Confidence            877532 233344789999999999999999999986  5433   2334778887776    333 5566778899999


Q ss_pred             EEEEEEeccC---CC-eEEEEECCEEe-cCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEEEEEeCCcceEEEEE
Q psy16652        292 ILECHVEAYP---PP-AIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIE  365 (384)
Q Consensus       292 ~l~C~~~~~p---~~-~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~  365 (384)
                      .|.|.+.+.|   .+ .+.|+++|..+ ..+.+.......... .....|.|.+++.+|.| .|+|.|.|..|....++.
T Consensus       247 ~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~  325 (329)
T 3oq3_B          247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGG-ITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTT  325 (329)
T ss_dssp             EEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETT-EEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCc-eeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEE
Confidence            9999999988   77 88999999874 333332222111111 34678999999999999 999999999999999998


Q ss_pred             EEEe
Q psy16652        366 LFDR  369 (384)
Q Consensus       366 l~v~  369 (384)
                      |.|+
T Consensus       326 l~v~  329 (329)
T 3oq3_B          326 VVLE  329 (329)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8873

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=251.94  Aligned_cols=288  Identities=17%  Similarity=0.251  Sum_probs=189.1

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCC---CCceEEEEE
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP---ETSTYILSI  148 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i  148 (384)
                      ..+...+....+.+|+++.|.|.+.+. |.+.+.|++++....  ..+....+   ....|+....+.   ......|.|
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~--~~i~~~~~---~~~~r~~~~~~~~~~~~~~~~L~I   78 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPAR--ELIYNQKE---GHFPRVTTVSESTKRENMDFSISI   78 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTC--EEEEETTS---SCCTTEEECC---CTTCCBCCEEE
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCc--eEEEEcCC---CCcceeeeecccccccCceeEEEE
Confidence            456677788889999999999999886 778999999775421  11111111   012344433221   145567999


Q ss_pred             eecCCCCCeeEEEEEEEccCcc----eeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC--eEEEEeCCC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNK----VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNS  222 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~  222 (384)
                      .+++.+|+|.|+|.+.+..+..    ....+.|.|..+|..+....+...+.+|+.+.|.|.+.+.|++  .+.|++++.
T Consensus        79 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~  158 (327)
T 2wng_A           79 SNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGN  158 (327)
T ss_dssp             CSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence            9999999999999998764431    2345678887665432222223457889999999999887665  899999987


Q ss_pred             cccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc--eeeEEEE--EEEecCeEEecCCCcccccCC
Q psy16652        223 AALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG--MKRNIAV--EVEFAPVITINRPRQGQALQY  289 (384)
Q Consensus       223 ~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~~~~g~  289 (384)
                      .+.....         .....+.|.|.....+|+|.|+|.+.|..+..  ......+  .+..+|.+...+..  +.+|+
T Consensus       159 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~  236 (327)
T 2wng_A          159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAEN  236 (327)
T ss_dssp             ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTT
T ss_pred             EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCC
Confidence            7654321         11223467787777778899999999976653  2233333  45677877665444  77899


Q ss_pred             cEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEE
Q psy16652        290 DAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIEL  366 (384)
Q Consensus       290 ~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  366 (384)
                      .+.|.|.+.|. |++ .+.|+++|..+.............+.....+.|.|..+..+|.|.|+|.|.|..|.. .+++.+
T Consensus       237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             CCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             cEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence            99999999995 444 899999999886543222222122112223568888999999999999999999865 444443


Q ss_pred             E
Q psy16652        367 F  367 (384)
Q Consensus       367 ~  367 (384)
                      .
T Consensus       317 ~  317 (327)
T 2wng_A          317 K  317 (327)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=100.00  E-value=6.2e-36  Score=259.16  Aligned_cols=278  Identities=21%  Similarity=0.361  Sum_probs=140.2

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +|.+.. +....+.+|++++|.|.+.+. |.+.+.|++++...              ....++.+      ....|.|.+
T Consensus         9 ~p~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~--------------~~~~~~~~------~~~~L~i~~   67 (334)
T 1ry7_B            9 GPEPGQ-QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--------------VPSERVLV------GPQRLQVLN   67 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCC-cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeC--------------CCcccEEe------ccceEEEee
Confidence            344444 777789999999999999876 56799999987642              11233322      134799999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCC----------------------cccc---CCCceEEeecCceEEEEE
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPP----------------------IISD---NSTRSVIVSEGQTVYLYC  205 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~----------------------~~~~---~~~~~~~~~~g~~~~l~C  205 (384)
                      ++.+|+|.|+|.+.+.  +..+..+.|.|...+                      .+..   .......+.+|+.+.|.|
T Consensus        68 v~~~D~G~Y~C~a~n~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C  145 (334)
T 1ry7_B           68 ASHEDSGAYSCRQRLT--QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC  145 (334)
T ss_dssp             -----------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEEC
T ss_pred             cccccCEEEEEEEEeC--CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEE
Confidence            9999999999999866  445556666665432                      1111   112345788999999999


Q ss_pred             EecccCCCeEEEEeCCCcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec----CeE
Q psy16652        206 YANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA----PVI  276 (384)
Q Consensus       206 ~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~  276 (384)
                      .+.+.|.+.+.|++++..+......     ......|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|...    |.+
T Consensus       146 ~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~  224 (334)
T 1ry7_B          146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPIL  224 (334)
T ss_dssp             CCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEEECCCCSSCBC
T ss_pred             EccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEEecCCCCCCce
Confidence            9999899999999998776544321     1234589999999999999999999988764 66777887763    333


Q ss_pred             Ee-cCCCcccccCCcEEEEEEEeccCCCeEEEEE----CCEEecCCCceeeeeeecc----CccccceEEEeecCCCCCe
Q psy16652        277 TI-NRPRQGQALQYDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHFATS----DEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       277 ~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G  347 (384)
                      .. .+....+..|+.+.|.|.+.|.|.+.+.|++    +|..+..+...........    .......|.|.+++.+|+|
T Consensus       225 ~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  304 (334)
T 1ry7_B          225 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAG  304 (334)
T ss_dssp             CTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCS
T ss_pred             EecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCE
Confidence            22 2345667889999999999999999999999    6776654433221111100    0112347999999999999


Q ss_pred             EEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        348 QYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       348 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .|+|.|.|..|....++.|.|...++
T Consensus       305 ~Y~C~a~N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          305 EYTCLAGNSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             EEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred             EEEEEEeCCCCeEEEEEEEEEEECCC
Confidence            99999999999999999999987764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-35  Score=249.40  Aligned_cols=276  Identities=19%  Similarity=0.221  Sum_probs=203.8

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +.+|.|...+....+.+|++++|.|.+.+.    +.|++++..                   ++.+..  ......|.|.
T Consensus         2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-------------------~~~~~~--~~~~~~L~i~   56 (292)
T 4dkd_C            2 GSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-------------------HWTLYS--DGSSSILSTN   56 (292)
T ss_dssp             --CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-------------------SCEECC--BTTEEEEEES
T ss_pred             CCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-------------------ceEEec--cCceEEEEEc
Confidence            467888888888999999999999998763    899964432                   111111  3345689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCCCccccc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNSAALST  227 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~  227 (384)
                      +++.+|+|.|+|.+.+..+ ..+..+.|.|..++......+....+.+|+.+.|.|.+.+ |.  +.+.|++++......
T Consensus        57 ~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~  134 (292)
T 4dkd_C           57 NATFQNTGTYRCTEPGDPL-GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR  134 (292)
T ss_dssp             SCCGGGCSCEEECCCC-----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS
T ss_pred             ccccccCEEEEEEEccCCC-CcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc
Confidence            9999999999999975443 3477788888877754444456778899999999999987 44  689999974333322


Q ss_pred             -Ccee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652        228 -GGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAYP  301 (384)
Q Consensus       228 -~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  301 (384)
                       .... .....|.|.++..+|+|.|+|.+.|..+...+..+.|.|..    +|.+...+....+.+|+.+.|.|.+.+.|
T Consensus       135 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~  214 (292)
T 4dkd_C          135 HTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD  214 (292)
T ss_dssp             SCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESS
T ss_pred             CCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCC
Confidence             2222 23446999999999999999999987776556678888887    88888877777778999999999999876


Q ss_pred             CC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        302 PP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       302 ~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      ++ .+.|++++..+..........   ......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|......+
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          215 VNFDVFLQHNNTKLAIPQQSDFHN---NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             SCCEEECCBSSCCCCCCBEEEEET---TEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             CceEEEEeCCCcccccCccceecc---ceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence            54 789999987765443322211   111234689999999999999999999999999999999998876544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.9e-34  Score=258.02  Aligned_cols=312  Identities=12%  Similarity=0.152  Sum_probs=203.3

Q ss_pred             cchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee-eeCcceeee
Q psy16652          7 FDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS-YISQEQIKD   85 (384)
Q Consensus         7 ~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~   85 (384)
                      .|++++....       +....+|.|.+++. |+| |.|.+..........      ..+... .+|.+. ..+.+..+.
T Consensus        36 ~w~k~~~~~~-------~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~------~~l~V~-~~P~~~~~~~~~~~v~   99 (450)
T 1z7z_I           36 PLPKKELLLP-------GNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAK------TFLTVY-WTPERVELAPLPSWQP   99 (450)
T ss_dssp             SSCEEECCSS-------TTTEEEEEEEEECS-CBC-CEEEEEETTEEEEEE------CEEEEE-BCCSEEEECCCCSEEC
T ss_pred             eeeecceEec-------CCCceEEEEEeccc-CCe-eEEEEeCCCCcceeE------EEEEEE-eCCCcceecCCCceEe
Confidence            8999976433       12456999999988 999 999986431111000      000111 244444 556667899


Q ss_pred             ccCcEEEEEEeecCCCc---cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         86 IAQTADLKCSVQYADDY---PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        86 ~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      +|+++.|.|.+.+.+++   .+.|++++....              ....     ........|.|.+++.+|+|.|+|.
T Consensus       100 ~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~--------------~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~  160 (450)
T 1z7z_I          100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELK--------------REPA-----VGEPAEVTTTVLVRRDHHGANFSCR  160 (450)
T ss_dssp             TTSEEEEEEEEECCBCGGGEEEEEEETTEEEE--------------EEEC-----CTTTEEEEEEEECCSSCSSCEEEEE
T ss_pred             eCCeEEEEEEecCCCCCcCcEEEEeeCCEEee--------------cccc-----cccccceEEEEEeeccccCceEEEE
Confidence            99999999999987776   899999765421              0000     0023345899999999999999999


Q ss_pred             EEEccCcc-------eeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-C--CCeEEEEeCCCcccccCceeE
Q psy16652        163 VIISLNNK-------VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-P--APTISWRRDNSAALSTGGSIY  232 (384)
Q Consensus       163 ~~~~~~~~-------~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~  232 (384)
                      +.+..+..       .+....+.|...+...........+.+|+.+.|.|.+.+. |  .+.+.|++++..+..  ....
T Consensus       161 a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~  238 (450)
T 1z7z_I          161 TELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTY  238 (450)
T ss_dssp             EEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEE
T ss_pred             EEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEe
Confidence            99764421       1234455555432111100111568899999999999887 6  679999999877654  2222


Q ss_pred             eccEEEEc---CCCCCCCe--EEEEEEEeCCCCceeeEEEEEEEe--cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652        233 RGNILKIP---NITKTDRG--TYYCVAQNGVGRGMKRNIAVEVEF--APVITINRPRQGQALQYDAILECHVEAYPPPAI  305 (384)
Q Consensus       233 ~~~~l~i~---~~~~~d~G--~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  305 (384)
                      ....+.+.   ++..+|+|  .|+|.+.|..+.. .....|.|..  +|.+...  ...+.+|+.+.|.|.+.  |.|.+
T Consensus       239 ~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~-~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i  313 (450)
T 1z7z_I          239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILT--KPEVSEGTEVTVKCEAH--PRAKV  313 (450)
T ss_dssp             ETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEES--CSEEETTCEEEEEEEC--------
T ss_pred             cCCceeEEEEEEeEhhhCCcEEEEEEEccCCccE-EEEEEEEEecCCCCeEecC--CeeEeCCCcEEEEEecC--CCCEe
Confidence            33333322   67899999  9999999987764 5567777776  5555443  45788999999999998  88899


Q ss_pred             EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc----ceEEEEEEEEeeeecCC
Q psy16652        306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG----SAQKEIELFDRETQTGD  375 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~  375 (384)
                      .|  +|..+....             ....|.|..++.+|+|.|+|.|.|..+    ....++.|.|..+|...
T Consensus       314 ~W--~g~~~~~~~-------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~  372 (450)
T 1z7z_I          314 TL--NGVPAQPLG-------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD  372 (450)
T ss_dssp             ------------C-------------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECC
T ss_pred             EE--CCEEcCCCC-------------ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCcee
Confidence            99  776662111             234799999999999999999997665    34467888888776543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.1e-34  Score=241.96  Aligned_cols=278  Identities=13%  Similarity=0.139  Sum_probs=186.7

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.|........+.+|++++|.|.+.+.    +.|++++....                .+..... ......+|.|.+++
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~----------------~~~~~~~-~~~~~~~L~i~~~~   59 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP----------------QEMAKAQ-DGTFSSVLTLTNLT   59 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS----------------EEEEECT-TSCEEEEEEECSCC
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc----------------cceeccC-CCceeEEEEEccCC
Confidence            455555666778999999999998763    99999876521                1111111 12234689999999


Q ss_pred             CCCCeeEEEEEEEccCcc--eeeeEEEEEecCCccccCCCce---EEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652        153 ETDAGIYKCEVIISLNNK--VSAEVELIVRRPPIISDNSTRS---VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~  227 (384)
                      .+|+|.|+|.+.+..+..  .+..+.|.|..+..........   ..+.+|+.+.|.|.+. .|.+.+.|++.+......
T Consensus        60 ~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~  138 (289)
T 3mjg_X           60 GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP  138 (289)
T ss_dssp             GGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC
T ss_pred             hhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc
Confidence            999999999998655432  3344445544333222111222   6689999999999998 577889998865322211


Q ss_pred             CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe--cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652        228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF--APVITINRPRQGQALQYDAILECHVEAYPPPAI  305 (384)
Q Consensus       228 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  305 (384)
                      ... .....+.    ..+|+|.|+|.+.+..+...+..+.+.+..  +|.+...+....+.+|+.+.|.|.+.|.|.+.+
T Consensus       139 ~~~-~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v  213 (289)
T 3mjg_X          139 VPY-DHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF  213 (289)
T ss_dssp             CCE-ETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEE
T ss_pred             eee-cCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcce
Confidence            111 1111122    357899999999987665545556676665  666666666677899999999999999999999


Q ss_pred             EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652        306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET  377 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  377 (384)
                      .|++++........................|.|.+++.+|+|.|+|.|.|..|....+..|.|.+.+.....
T Consensus       214 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~~  285 (289)
T 3mjg_X          214 EWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHH  285 (289)
T ss_dssp             EEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-----
T ss_pred             EEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCccc
Confidence            999887654332221111111111234578999999999999999999999999999999999988765443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=248.39  Aligned_cols=259  Identities=16%  Similarity=0.214  Sum_probs=192.0

Q ss_pred             eeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         82 QIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      ..+.+|+.+.|.|... +.|.+.+.|++++...              ....++.+..  ......|.|.+++.+|+|.|+
T Consensus        11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i--------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~   74 (312)
T 2y23_A           11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVST--------------EDSPRLEVES--KGNKTKMTFKDLGMDDLGIYS   74 (312)
T ss_dssp             EEECTTCCEEEEEECSSCCTTCCEEEEETTEEC--------------TTCTTEEEEE--ETTEEEEEESSCCGGGCEEEE
T ss_pred             EEEecCCeEEEEEEEeCCCCCcEEEEEECCEEC--------------CCCCCEEEEE--eCCEEEEEECcCCccCCEEEE
Confidence            4578999999999886 3578899999977542              2234565555  345568999999999999999


Q ss_pred             EEEEEccCcceeeeEEEEEec------------CCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCccccc
Q psy16652        161 CEVIISLNNKVSAEVELIVRR------------PPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALST  227 (384)
Q Consensus       161 C~~~~~~~~~~~~~~~l~v~~------------~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~  227 (384)
                      |.+.+..+...  ...+.|..            +|.+.........+.+|+.+.|.|.+. +.|.+.+.|++++..+...
T Consensus        75 C~~~n~~g~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~  152 (312)
T 2y23_A           75 CDVTDTDGIAS--SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG  152 (312)
T ss_dssp             EEESSSCCCCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS
T ss_pred             EEEEeCCCcEE--EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC
Confidence            99976554322  44455542            444433222367789999999999998 7889999999999877665


Q ss_pred             CceeEec------cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE---------------------EecCeEEecC
Q psy16652        228 GGSIYRG------NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV---------------------EFAPVITINR  280 (384)
Q Consensus       228 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~  280 (384)
                      .......      ..|.|.+++.+|+|.|+|.+.+....   ....+.+                     ..+|.+... 
T Consensus       153 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  228 (312)
T 2y23_A          153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT---NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-  228 (312)
T ss_dssp             SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE---EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-
T ss_pred             CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce---EEEEEEEcchhhhhhcccccccccchhhccCCceeec-
Confidence            4333221      24999999999999999999864332   2233333                     122544322 


Q ss_pred             CCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..+.++.+..       ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus       229 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~  301 (312)
T 2y23_A          229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGK  301 (312)
T ss_dssp             EEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-----------CEEEEEECSCSGGGCEEEEEEEESTTCC
T ss_pred             ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEEC-------CEEEEEECcCCHHHCEEEEEEEEcCCCc
Confidence            22567899999999999999998 999999999997666555431       3468999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                      ...++.|.++
T Consensus       302 ~~~~~~l~i~  311 (312)
T 2y23_A          302 DKSRLKLVDE  311 (312)
T ss_dssp             EEEEEEECSC
T ss_pred             eeeeeEEEec
Confidence            9999998764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=237.19  Aligned_cols=248  Identities=22%  Similarity=0.280  Sum_probs=191.5

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++....                          .....|.|.+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~--------------------------~~~~~l~i~~   54 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ--------------------------TSTPSYRITS   54 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECS--------------------------CCSSEEEESS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEee--------------------------ccCCeEEEec
Confidence            4678888888899999999999999887766 999999765321                          1123699999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      ++.+|+|.|+|.+.+.   ..+..+.|.|..++....  +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..   
T Consensus        55 ~~~~d~G~Y~C~~~~~---~~s~~~~l~v~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~---  126 (262)
T 3rjd_A           55 ASVNDSGEYRCQRGLS---GRSDPIQLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF---  126 (262)
T ss_dssp             CCGGGCEEEEEEESSS---CCCCCEEEEEECSSEEEE--ESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE---
T ss_pred             CCcccCeEEEEEEecC---CccccEEEEEeccceEec--CCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc---
Confidence            9999999999998642   334567788876654332  334557899999999999 6777889999998876532   


Q ss_pred             eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCC-C--
Q psy16652        230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAYPP-P--  303 (384)
Q Consensus       230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~--  303 (384)
                       ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+.|. +  
T Consensus       127 -~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~  203 (262)
T 3rjd_A          127 -FHWNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGL  203 (262)
T ss_dssp             -EEECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC----
T ss_pred             -cCCCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCc
Confidence             224568999999999999999999998754 36677888875   55565544 566889999999999999876 4  


Q ss_pred             --eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE---EEEEEEe
Q psy16652        304 --AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK---EIELFDR  369 (384)
Q Consensus       304 --~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~  369 (384)
                        .+.|++++..+....             ....|.|..++.+|+|.|+|.|.|..|+...   .+.|.|.
T Consensus       204 ~~~~~w~~~~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          204 QLYFSFYMGSKTLRGRN-------------TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             -EEEEEEETTEEEEEEE-------------SCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             cEEEEEEeCCcEecccC-------------CCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence              378999998775221             3568999999999999999999999997532   3445443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=100.00  E-value=2.2e-34  Score=247.33  Aligned_cols=274  Identities=19%  Similarity=0.215  Sum_probs=197.7

Q ss_pred             cceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         80 QEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ..+.+.+|+++.|.|.+.+.+ .+.+.|++++....     ..     .....++....      ..|.|.+++.+|+|.
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~-----~~-----~~~~~~~~~~~------~~L~i~~v~~~D~G~   76 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTP-----VS-----TEQASRIHQHK------EKLWFVPAKVEDSGH   76 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSC-----SC-----CCTTSSSEECS------SBEECTTCCGGGCSC
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCc-----cc-----cccCCcEeccC------CeEEECCCChhhCEE
Confidence            355689999999999998876 77999999875421     00     01223333322      269999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEe-cCCccccCC--CceEEeecCceEEEEEEe------cccCCCeEEEEeCCCcccccC-
Q psy16652        159 YKCEVIISLNNKVSAEVELIVR-RPPIISDNS--TRSVIVSEGQTVYLYCYA------NGFPAPTISWRRDNSAALSTG-  228 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~-~~~~~~~~~--~~~~~~~~g~~~~l~C~~------~~~~~~~v~W~~~~~~~~~~~-  228 (384)
                      |+|.+.+.. +.....+.+.+. .+|.+....  .....+..|+.+.|.|.+      .+.|.+.+.|++++..+.... 
T Consensus        77 Y~C~a~n~~-g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~  155 (315)
T 1itb_B           77 YYCVVRNSS-YCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI  155 (315)
T ss_dssp             CEECCCSSS-CCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS
T ss_pred             EEEEEeCCc-eEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc
Confidence            999998543 333344444433 333332111  123568899999999998      788889999999998775432 


Q ss_pred             ceeEeccEEEEcCCCCCCCeEEEEEEE-eCCCCce--eeEEEEEEE-----ecCeEEecCCC-cccccCCcEEEEEEEec
Q psy16652        229 GSIYRGNILKIPNITKTDRGTYYCVAQ-NGVGRGM--KRNIAVEVE-----FAPVITINRPR-QGQALQYDAILECHVEA  299 (384)
Q Consensus       229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~~  299 (384)
                      .....+..|.|.+++.+|+|.|+|.+. |..|...  +..+.+.+.     .+|.+...+.. ..+.+|+.+.|.|.+.|
T Consensus       156 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g  235 (315)
T 1itb_B          156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG  235 (315)
T ss_dssp             SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEE
T ss_pred             eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEec
Confidence            334456799999999999999999999 6666643  233444333     56766544433 46789999999999999


Q ss_pred             cCCCeEEEEECCEEecCCCceeeeeeeccC-------ccccceEEEeecCCCC-CeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSD-------EFSDTSLRVITIERRQ-FGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       300 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|.|.+.|+++|..+...............       ....+.|.|.+++.+| +|.|+|.|.|..|....++.|.|+.
T Consensus       236 ~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             CTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            999999999999999876543322211100       0124589999999999 9999999999999999999998853

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=6e-34  Score=253.26  Aligned_cols=281  Identities=21%  Similarity=0.368  Sum_probs=208.2

Q ss_pred             ccCCCCeeee-CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         69 SQRTPTISYI-SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        69 ~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ...+|.+... +....+.+|++++|.|.+.+.|.+.+.|++++.....            ....++.+..    ....|.
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~------------~~~~~~~~~~----~~~~l~   76 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI------------AKDPRVSMRR----RSGTLV   76 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCG------------GGCSSCBCCS----SSCCCB
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeee------------ecCCcceEec----CCceEE
Confidence            4467777754 6667899999999999998888889999997754210            0111222211    122344


Q ss_pred             Ee----ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCC
Q psy16652        148 IK----EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS  222 (384)
Q Consensus       148 i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~  222 (384)
                      |.    +++.+|+|.|+|.+.+..+...+..+.|.|..+|...........+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus        77 i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~  156 (404)
T 3p3y_A           77 IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM  156 (404)
T ss_dssp             CCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTS
T ss_pred             EEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCc
Confidence            43    7889999999999987665555677889998887766555556789999999999998 778889999999875


Q ss_pred             cccccCcee--EeccEEEEcCCCCCC-CeEEEEEEEeCCCCcee--eEEEEEEEecC-------eEEecC---CCccccc
Q psy16652        223 AALSTGGSI--YRGNILKIPNITKTD-RGTYYCVAQNGVGRGMK--RNIAVEVEFAP-------VITINR---PRQGQAL  287 (384)
Q Consensus       223 ~~~~~~~~~--~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~--~~~~l~v~~~p-------~~~~~~---~~~~~~~  287 (384)
                      .........  ..+..|.|.++..+| +|.|+|.+.|..+....  ..+.+.+...+       .+....   ....+..
T Consensus       157 ~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~  236 (404)
T 3p3y_A          157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLR  236 (404)
T ss_dssp             CBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEET
T ss_pred             cccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEec
Confidence            544333222  235689999999999 59999999997775422  23445554332       221111   1234778


Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      |+.+.|.|.+.|.|.+.+.|+++|..+....... .       .....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus       237 G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  308 (404)
T 3p3y_A          237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF-E-------NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR  308 (404)
T ss_dssp             TSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEE-E-------GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCEEEEEEECCCCCCcEEEEECCEECCCCcccc-c-------ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEE
Confidence            9999999999999999999999999886554311 1       1357899999999999999999999999999999999


Q ss_pred             Eeeeec
Q psy16652        368 DRETQT  373 (384)
Q Consensus       368 v~~~~~  373 (384)
                      |..+|.
T Consensus       309 V~~~p~  314 (404)
T 3p3y_A          309 VKAAPY  314 (404)
T ss_dssp             EEEEEE
T ss_pred             EeCCCe
Confidence            988763

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.4e-33  Score=247.36  Aligned_cols=277  Identities=20%  Similarity=0.280  Sum_probs=197.9

Q ss_pred             cCCCCeeeeCcceee---eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         70 QRTPTISYISQEQIK---DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      ...|.+...|....+   .+|+.+.|.|.+.+.|.+.+.|++++.....            ..+.++.+..      ..|
T Consensus         3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~------------~~~~~~~~~~------g~l   64 (384)
T 3kld_A            3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDI------------GMDFRYSVVD------GSL   64 (384)
T ss_dssp             CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----------------CEEEET------TEE
T ss_pred             CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcC------------CCCccEEEEC------CEE
Confidence            345677777777765   5889999999999999999999997754210            0122333221      146


Q ss_pred             EEeec-CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcc
Q psy16652        147 SIKEI-QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAA  224 (384)
Q Consensus       147 ~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~  224 (384)
                      .|.+. +.+|+|.|+|.+.|..+...+....+.+...+...........+.+|+.+.|.|.+. +.+.+.+.|++++..+
T Consensus        65 ~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~  144 (384)
T 3kld_A           65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS  144 (384)
T ss_dssp             EEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEEC
T ss_pred             EEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCC
Confidence            67665 789999999999987665555666666655444443334557789999999999764 4567799999988766


Q ss_pred             cccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCcee--eEEEEEEE-------ecCeEEe-cCCCcccccCCcEE
Q psy16652        225 LSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMK--RNIAVEVE-------FAPVITI-NRPRQGQALQYDAI  292 (384)
Q Consensus       225 ~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~-~~~~~~~~~g~~~~  292 (384)
                      ........  ....|.|.++..+|+|.|+|.+.|..+....  ....+.+.       ..|.+.. .+....+.+|+.+.
T Consensus       145 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~  224 (384)
T 3kld_A          145 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVK  224 (384)
T ss_dssp             CCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEE
T ss_pred             EeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEE
Confidence            54433332  3457999999999999999999997765311  11122221       2343333 34455678899999


Q ss_pred             EEEEEeccCCCeEEEEECC-EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        293 LECHVEAYPPPAIVWIKDG-VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       293 l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      |.|.+.|.|.|.+.|++++ ..+....+..         .....|.|.+++.+|+|.|+|.|.|..|.......|.|..+
T Consensus       225 l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~---------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~  295 (384)
T 3kld_A          225 LECFALGNPVPTILWRRADGKPIARKARRH---------KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ  295 (384)
T ss_dssp             EEEEEEEESCCEEEEEETTCCCCCTTCEEC---------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEEEEeecCCCcEEEEeCCCccccccceec---------CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC
Confidence            9999999999999999954 4443322111         13568999999999999999999999999999999988877


Q ss_pred             ec
Q psy16652        372 QT  373 (384)
Q Consensus       372 ~~  373 (384)
                      |.
T Consensus       296 P~  297 (384)
T 3kld_A          296 PN  297 (384)
T ss_dssp             EE
T ss_pred             Cc
Confidence            64

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=2.1e-35  Score=265.77  Aligned_cols=316  Identities=12%  Similarity=0.132  Sum_probs=195.9

Q ss_pred             CceEEEEEeeecceEEEEEEEeeeccch--hHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCc
Q psy16652         26 KPIRFFIHEVTGEKVTSVILLFKMSVAG--PSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDY  102 (384)
Q Consensus        26 ~~~~l~i~~~~~~d~G~y~c~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~  102 (384)
                      +..+|.|.+++.+|+|.|.|.+......  .... .. .+........+|.+...+....+.+|+.++|.|.+.+. |.+
T Consensus        77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~-~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  154 (444)
T 1igt_B           77 NTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQ-GT-TVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP  154 (444)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBC-CE-EEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSC
T ss_pred             CeEEEEECCCCHHHCEEEEEEEecCCcccccccC-cE-EEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCC
Confidence            4679999999999999999998764211  0000 00 00000012234555544444446899999999999874 554


Q ss_pred             -cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEE--
Q psy16652        103 -PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV--  179 (384)
Q Consensus       103 -~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v--  179 (384)
                       .+.|++++....     ...... ....+.|...       ..|.|.+++.+| |.|+|.+.+..+.. .....+.+  
T Consensus       155 ~~v~W~~~~~~~~-----~~~~~~-~~~~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~  219 (444)
T 1igt_B          155 VTLTWNSGSLSSG-----VHTFPA-VLQSDLYTLS-------SSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRG  219 (444)
T ss_dssp             CEEEEGGGTBCTT-----EEECCC-EEETTEEEEE-------EEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCC
T ss_pred             cEEEEecCCCCCC-----eEecCc-cccCCcEEEE-------EEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCC
Confidence             999999775421     000000 0111333332       369999999999 99999998765542 22222211  


Q ss_pred             ----------------ecCCccccCCCceEE-eecCceEEEEEEecccC----CCeEEEEeCCCcccccCc---------
Q psy16652        180 ----------------RRPPIISDNSTRSVI-VSEGQTVYLYCYANGFP----APTISWRRDNSAALSTGG---------  229 (384)
Q Consensus       180 ----------------~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~---------  229 (384)
                                      ..+|.+....+.... +.+|+++.|.|.+.|.+    .+.+.|++++..+.....         
T Consensus       220 ~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~  299 (444)
T 1igt_B          220 PTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS  299 (444)
T ss_dssp             CSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSS
T ss_pred             CCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCC
Confidence                            112222111121111 47899999999998873    358999999876543211         


Q ss_pred             eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec-cCCC-e
Q psy16652        230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA-YPPP-A  304 (384)
Q Consensus       230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~  304 (384)
                      .......|.|.+++.+|+|.|+|.|.|..+... ...+.+  .+..+|.+.+.+.......+..++|.|.+.| +|++ .
T Consensus       300 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~  379 (444)
T 1igt_B          300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIY  379 (444)
T ss_dssp             SEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCE
T ss_pred             cEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCE
Confidence            112345799999999999999999999877641 233333  4557888776554433334445999999998 5665 8


Q ss_pred             EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       305 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      |.|+++|..+.............+.....+.|.|.....+|.|.|+|.|.|..-
T Consensus       380 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          380 VEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             EEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            999999998843211111111111111234567777777889999999999864

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=100.00  E-value=5.6e-34  Score=247.39  Aligned_cols=285  Identities=15%  Similarity=0.211  Sum_probs=207.6

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEee-------cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCC
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQ-------YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPET  141 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (384)
                      ...+|.+...+....+.+|+++.|.|.+.       +.+.+.+.|++++....     +..     ....++...     
T Consensus        15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~-----~~~-----~~~~~~~~~-----   79 (339)
T 3o4o_C           15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART-----VPG-----EEETRMWAQ-----   79 (339)
T ss_dssp             ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSC-----CSC-----CSSSCEEEE-----
T ss_pred             chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcc-----cCc-----cccccEEee-----
Confidence            44678899999999999999999999997       77888999999876521     000     012233222     


Q ss_pred             ceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc-CCCceEEeecCceEEEEEE-----ecccCCCeE
Q psy16652        142 STYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD-NSTRSVIVSEGQTVYLYCY-----ANGFPAPTI  215 (384)
Q Consensus       142 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~-----~~~~~~~~v  215 (384)
                       ...|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..++.... .......+.+|+.+.|.|.     +.+.|.+.+
T Consensus        80 -~~~L~i~~v~~~D~G~Y~C~~~n~~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v  157 (339)
T 3o4o_C           80 -DGALWLLPALQEDSGTYVCTTRNAS-YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI  157 (339)
T ss_dssp             -TTEEEESSBCTTCCEEEECCEEETT-EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCB
T ss_pred             -CCeEEECCCCcccCEEEEEEEECCc-ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceE
Confidence             1269999999999999999998654 4566778888887654321 1123356889999999999     778888999


Q ss_pred             EEEeCCCcccccCcee-Ee--ccEEEEcCCCCCCCeEEEEEEEeCCCC---ceeeEEEEEEEe-----cCeEEecCCCcc
Q psy16652        216 SWRRDNSAALSTGGSI-YR--GNILKIPNITKTDRGTYYCVAQNGVGR---GMKRNIAVEVEF-----APVITINRPRQG  284 (384)
Q Consensus       216 ~W~~~~~~~~~~~~~~-~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~~  284 (384)
                      .|++++..+....... ..  ...|.|.+++.+|+|.|+|.+.|..+.   ..+..+.|.|..     +|.+...+....
T Consensus       158 ~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~  237 (339)
T 3o4o_C          158 QWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS  237 (339)
T ss_dssp             CCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCC
T ss_pred             EEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeE
Confidence            9999998776543322 22  248999999999999999999997664   235667777764     456666666677


Q ss_pred             cccCCcEEEEEEE---eccC-CCeEEEEECCEEecCCC---ceeeeee----eccCccccceEEEeecCCCCC-eEEEEE
Q psy16652        285 QALQYDAILECHV---EAYP-PPAIVWIKDGVQIMNNQ---HYSVSHF----ATSDEFSDTSLRVITIERRQF-GQYACK  352 (384)
Q Consensus       285 ~~~g~~~~l~C~~---~~~p-~~~v~W~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~l~i~~~~~~d~-G~Y~C~  352 (384)
                      +..|+.+.|.|.+   .|.| .+.+.|+++|..+....   +......    ..+.......|.|.+++.+|. |.|+|.
T Consensus       238 v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~  317 (339)
T 3o4o_C          238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV  317 (339)
T ss_dssp             CCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEE
T ss_pred             eccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEE
Confidence            8899999999999   8999 78999999998764321   1111100    011111122799999999997 999999


Q ss_pred             EEeCCcceEEEEEEEEee
Q psy16652        353 AANKYGSAQKEIELFDRE  370 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~  370 (384)
                      |.|..|+.+..++|.+..
T Consensus       318 a~N~~G~~~~~~~~~~~~  335 (339)
T 3o4o_C          318 VHNTLSFQTLRTTVKEHH  335 (339)
T ss_dssp             EEETTEEECCBCCCCC--
T ss_pred             EEeccCceEEEEEhhHhc
Confidence            999999999888776543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=4.9e-33  Score=246.62  Aligned_cols=279  Identities=18%  Similarity=0.237  Sum_probs=200.7

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ..+|.+...+....+.+|+.++|.|.+.+ .+.+.+.|++++......             ..++..    .....+|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~-------------~~~~~~----~~~~~~L~i   66 (395)
T 1bih_A            4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ-------------EHNAAL----RKDEGSLVF   66 (395)
T ss_dssp             -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTT-------------TTTEEE----CTTSCCEEE
T ss_pred             CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccc-------------cceEEE----ecCCceEEE
Confidence            46788998899999999999999999998 788899999987653111             001111    122346999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCC---
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS---  222 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~---  222 (384)
                      .+++.+|+|.|+|.+.+..+...+..+.|.+..  .|.+   .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   
T Consensus        67 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~---~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~  143 (395)
T 1bih_A           67 LRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA---KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD  143 (395)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC---EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSC
T ss_pred             ecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc---CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcC
Confidence            999999999999999876554444445555442  2322   2345567899999999996 788889999999862   


Q ss_pred             cccc----cCc-eeEeccEEEEcCCCCCCCe---EEEEEEEeCCCCceeeEEEEEEE------------ecCeEEecCCC
Q psy16652        223 AALS----TGG-SIYRGNILKIPNITKTDRG---TYYCVAQNGVGRGMKRNIAVEVE------------FAPVITINRPR  282 (384)
Q Consensus       223 ~~~~----~~~-~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~l~v~------------~~p~~~~~~~~  282 (384)
                      ....    ... ....++.|.|.+++.+|+|   .|+|.+.|..+..........+.            .+|.+  .+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~  221 (395)
T 1bih_A          144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKD  221 (395)
T ss_dssp             GGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCS
T ss_pred             cccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCc
Confidence            1111    111 1223557999999999999   99999999877643221111111            12222  3455


Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ..+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......+...   .......|.|.+++.+|+|.|+|.|.|..|....
T Consensus       222 ~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  298 (395)
T 1bih_A          222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH---NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK  298 (395)
T ss_dssp             EEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESC---SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             eEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEE---ecCCCceEEEccCChhhCEEEEEEEEeCCCCceE
Confidence            6788999999999999999999999999998876543332211   1112347999999999999999999999999766


Q ss_pred             -EEEEEEeeeec
Q psy16652        363 -EIELFDRETQT  373 (384)
Q Consensus       363 -~~~l~v~~~~~  373 (384)
                       ++.|.|..+|.
T Consensus       299 ~~~~l~V~~~P~  310 (395)
T 1bih_A          299 HSLKLTVVSAPK  310 (395)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEcCCc
Confidence             88888887754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=7.7e-33  Score=250.93  Aligned_cols=319  Identities=14%  Similarity=0.144  Sum_probs=197.3

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccch--h--HHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVAG--P--SIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-   99 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~--~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-   99 (384)
                      .+..+|.|.+++.+|+|.|+|.+......  .  ...... .+........+|.+...+.. .+.+|+.++|.|.+.+. 
T Consensus        77 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~  154 (475)
T 1iga_A           77 ATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGT-LVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFF  154 (475)
T ss_pred             CCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCce-EEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeec
Confidence            34579999999999999999998764321  0  000000 00000112234555543322 23689999999999886 


Q ss_pred             CC--ccEEEEEeCCCCCCcccceeccCcee-eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEE
Q psy16652        100 DD--YPVIWMKMDTAKKMEPLPISMSGSLI-IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVE  176 (384)
Q Consensus       100 ~~--~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  176 (384)
                      |.  ..+.|++++....     ........ ..++.|...       ..|.|.++..+|+|.|+|.+.+..+......+.
T Consensus       155 P~~p~~v~W~~~~~~~~-----~~~~~~~~~~~~g~~~~~-------s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~  222 (475)
T 1iga_A          155 PQEPLSVTWSESGQGVT-----ARNFPPSQDASGDLYTTS-------SQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVP  222 (475)
T ss_pred             CCCceEEEEcCCCcccc-----eEeCCceecCCCCcEEEE-------EEEEechhHcCCCceEEEEEEECCCCceeeeEe
Confidence            44  3999998663210     00000000 122333332       258999999999999999999776533334444


Q ss_pred             EEEe------------------cCCccccCCCceEEeecCceEEEEEEecccCC---CeEEEEeCCCccccc--------
Q psy16652        177 LIVR------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA---PTISWRRDNSAALST--------  227 (384)
Q Consensus       177 l~v~------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~--------  227 (384)
                      +.|.                  .+|.+....+....+.+|+.+.|.|.+.+.++   +.+.| + +..+...        
T Consensus       223 l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~  300 (475)
T 1iga_A          223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERD  300 (475)
T ss_pred             cccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceEC
Confidence            3331                  12222112222223578999999999987644   58999 4 3333211        


Q ss_pred             -CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE---EEecCeEEecCCC-cccccCCcEEEEEEEeccCC
Q psy16652        228 -GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE---VEFAPVITINRPR-QGQALQYDAILECHVEAYPP  302 (384)
Q Consensus       228 -~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~  302 (384)
                       .+.....+.|.|.++..+|+|.|+|.|.|..+.. .....|.   +..+|.+.+.+.. ..+..|+.+.|.|.+.|.++
T Consensus       301 ~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P  379 (475)
T 1iga_A          301 LCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSP  379 (475)
T ss_pred             CCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC-ceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeEC
Confidence             1111234579999999999999999999987764 2233442   3567877665544 34678899999999998533


Q ss_pred             --CeEEEEECCEEecCCCceee--eee---eccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        303 --PAIVWIKDGVQIMNNQHYSV--SHF---ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       303 --~~v~W~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                        +.|.|+++|..+........  ...   ..+.....+.|.|.....+|.|.|+|.|.|.....
T Consensus       380 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~  444 (475)
T 1iga_A          380 KDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  444 (475)
T ss_pred             CCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCC
Confidence              49999999999875531111  111   11111223567777777889999999999987553

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.1e-32  Score=243.35  Aligned_cols=274  Identities=21%  Similarity=0.276  Sum_probs=205.4

Q ss_pred             CCCCeeeeCcceee---eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         71 RTPTISYISQEQIK---DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        71 ~~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      .+|.|...|....+   .+|++++|.|.+.+.|.+.+.|++++.....            ....++.+..      ..|.
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~------------~~~~~~~~~~------~~L~   64 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKM------------GPDSRYRLVA------GDLV   64 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCC------------STTSSEEEET------TEEE
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCc------------CCCccEEeeC------CeEE
Confidence            36778888888776   7899999999998888889999997754210            0123444322      2699


Q ss_pred             EeecCC-CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc
Q psy16652        148 IKEIQE-TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL  225 (384)
Q Consensus       148 i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~  225 (384)
                      |.++.. +|+|.|+|.+.+..+...+..+.|.|...+...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        65 i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~  144 (382)
T 1cs6_A           65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF  144 (382)
T ss_dssp             EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred             EecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc
Confidence            999997 999999999987665545556777776655554444566789999999999996 456788999999987643


Q ss_pred             c--cCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCce----eeEEEEEEE------ecCeEEec-CCCcccccCCc
Q psy16652        226 S--TGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGM----KRNIAVEVE------FAPVITIN-RPRQGQALQYD  290 (384)
Q Consensus       226 ~--~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~  290 (384)
                      .  ......  ....|.|.+++.+|+|.|+|.+.|..+...    +..+.+.+.      .+|.+... +....+..|+.
T Consensus       145 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~  224 (382)
T 1cs6_A          145 IPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM  224 (382)
T ss_dssp             CCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCC
T ss_pred             cccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCe
Confidence            2  112211  235799999999999999999998764321    222344432      24555443 44567889999


Q ss_pred             EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +.|.|.+.+.|.+.+.|++++..+...           .......|.|.+++.+|.|.|+|.|.|..|.....+.|.|..
T Consensus       225 v~l~C~~~g~p~~~i~W~~~~~~~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  293 (382)
T 1cs6_A          225 VTLECFAFGNPVPQIKWRKLDGSQTSK-----------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA  293 (382)
T ss_dssp             EEEECEEEEESCCEEEEEECCSCCSCC-----------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEEEEEccCCCCEEEEEECCcccccE-----------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence            999999999999999999988765431           112467899999999999999999999999999999999987


Q ss_pred             eec
Q psy16652        371 TQT  373 (384)
Q Consensus       371 ~~~  373 (384)
                      +|.
T Consensus       294 ~p~  296 (382)
T 1cs6_A          294 QPD  296 (382)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=1.6e-33  Score=246.74  Aligned_cols=269  Identities=16%  Similarity=0.183  Sum_probs=189.8

Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCc-c-cceeccCceeeeCCceEEeeCC-CCceEEEEEeecCCCCCee
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKME-P-LPISMSGSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~  158 (384)
                      +.+.+|++++|.|.+.+.+.+.+.|++++...... . ..+....  .....|+.+..+. ..+..+|.|.+++.+|+|.
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGP--SKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECS--STTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCC--cccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            45789999999999988888899999987531100 0 0000000  0112344332200 1234579999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEE
Q psy16652        159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK  238 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~  238 (384)
                      |+|.+.+.     ...+.|.|.....     .+...+.+|+++.|.|.+.+.|.+.+.|++++..+      ......|.
T Consensus        82 Y~C~~~n~-----~~~~~l~V~~~~~-----~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~  145 (363)
T 1wio_A           82 YICEVEDQ-----KEEVQLLVFGLTA-----NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLS  145 (363)
T ss_dssp             EEEEETTE-----EEEEEEEEEEEEE-----SSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEE
T ss_pred             EEEEEEEC-----CCcEEEEEEeCCC-----CCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEE
Confidence            99998643     2356666654211     11124689999999999988888999999987653      33567899


Q ss_pred             EcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-----cCCCeEEEEECCEE
Q psy16652        239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-----YPPPAIVWIKDGVQ  313 (384)
Q Consensus       239 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~  313 (384)
                      |.+++.+|+|.|+|.+.+..+.. ...+.+.|...|...   ....+.+|+.+.|.|.+.+     .|.|.+.|+++|..
T Consensus       146 i~~v~~~d~G~Y~C~a~~~~~~~-~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~  221 (363)
T 1wio_A          146 VSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS  221 (363)
T ss_dssp             ECSBCGGGCEECEEEEEETTEEE-EECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCC
T ss_pred             EeeCChhcCCEEEEEEecCCCeE-EEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCC
Confidence            99999999999999999864432 455566666555432   3455778999999998877     78889999999988


Q ss_pred             ecC--------CCceeeeeeecc-----CccccceEEEeecCCCCCeEEEEEEEeC--CcceEEEEEEEEeeee
Q psy16652        314 IMN--------NQHYSVSHFATS-----DEFSDTSLRVITIERRQFGQYACKAANK--YGSAQKEIELFDRETQ  372 (384)
Q Consensus       314 ~~~--------~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~  372 (384)
                      +..        +.++.+......     .......|.|.+++.+|+|.|+|.|.|.  .|.....+.|.|...+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~  295 (363)
T 1wio_A          222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT  295 (363)
T ss_dssp             CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC
T ss_pred             ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec
Confidence            765        333333221110     0112458999999999999999999999  9999999999887554

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=7e-33  Score=266.44  Aligned_cols=310  Identities=18%  Similarity=0.238  Sum_probs=119.1

Q ss_pred             ceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe---eeeCcceeeecc--CcEEEEEEeecCCC
Q psy16652         27 PIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI---SYISQEQIKDIA--QTADLKCSVQYADD  101 (384)
Q Consensus        27 ~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~v~~g--~~v~l~C~~~~~~~  101 (384)
                      ..+|.|.+++.+|+|.|.|.+..........    +.+  . ....|.+   ...+....+.+|  ++++|.|.+.+ +.
T Consensus        85 ~~~l~I~~~~~~d~G~Y~C~~~~~~~~~~~~----v~v--~-~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~  156 (772)
T 3v2a_R           85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIY----VYV--Q-DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SN  156 (772)
T ss_dssp             ------------------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SS
T ss_pred             EEEEEECCCcHhhCEeEEEEEcCCCEEEEEE----EEE--C-CCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CC
Confidence            5699999999999999999987321111111    111  1 1112222   223445668889  88999999876 66


Q ss_pred             ccEEEEEe--CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        102 YPVIWMKM--DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       102 ~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      ..+.|+++  +.....             .+..+...     ....|.|.+++.+|+|.|+|.+.+......+....+.+
T Consensus       157 ~~v~w~~~~~~~~~~~-------------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v  218 (772)
T 3v2a_R          157 LNVSLCARYPEKRFVP-------------DGNRISWD-----SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV  218 (772)
T ss_dssp             CCEEEEEETTTEEECC-------------CSSSCEEE-----TTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEE
T ss_pred             cEEEEEecCCCccccC-------------CCceeecC-----CCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEE
Confidence            79999997  432100             01111111     11259999999999999999998643333333344544


Q ss_pred             ecCC--ccccCCCceEEeecCceEEEEEEecc--cCCCeEEEEeCCCcccccC------------ceeEeccEEEEcCCC
Q psy16652        180 RRPP--IISDNSTRSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAALSTG------------GSIYRGNILKIPNIT  243 (384)
Q Consensus       180 ~~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~------------~~~~~~~~l~i~~~~  243 (384)
                      ...+  .+....+....+.+|+.+.|.|.+.+  .+.+.+.|++++..+....            ........|.|.+++
T Consensus       219 ~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  298 (772)
T 3v2a_R          219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT  298 (772)
T ss_dssp             ECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCC
T ss_pred             ecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCC
Confidence            4322  22222233467899999999999976  4456899999887643321            112244589999999


Q ss_pred             CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecC---CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCce
Q psy16652        244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINR---PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY  320 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~  320 (384)
                      .+|+|.|+|.+.|..+.. +..+.|.|..+|.+...+   ....+.+|+.+.|.|.+.++|.+.+.|+++|..+......
T Consensus       299 ~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~  377 (772)
T 3v2a_R          299 RSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI  377 (772)
T ss_dssp             STTCSEEEEEEECSSCEE-EEEEEEEEECCCC------------------------------------------------
T ss_pred             cCCCeEEEEEEEcCCcce-eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceE
Confidence            999999999999987754 678889999888765433   3466788999999999999999999999999888653221


Q ss_pred             eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE--EEEEEEEeeeec
Q psy16652        321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ--KEIELFDRETQT  373 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~  373 (384)
                      .          ....|.|..++.+|+|.|+|.|.|..|...  ..+.|.|..+|.
T Consensus       378 ~----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~  422 (772)
T 3v2a_R          378 K----------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ  422 (772)
T ss_dssp             -------------------------------------------------------
T ss_pred             c----------cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCc
Confidence            1          347899999999999999999999998764  456666665554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=5.7e-32  Score=239.19  Aligned_cols=275  Identities=16%  Similarity=0.248  Sum_probs=197.8

Q ss_pred             CCCCeeeeCcce-eeeccCcEEEEEEeecCCCccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQ-IKDIAQTADLKCSVQYADDYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~-~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.|...+... .+.+|+.++|.|.+.+.|.+.+.|+++ +....              ...++....    ...+|.|
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~--------------~~~~~~~~~----~~~~L~i   63 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG--------------DVPGLRQIS----SDGKLVF   63 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCC--------------CBTTTBEEC----STTEEEE
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccc--------------cCCCceEEc----CCceEEe
Confidence            356777777664 478999999999999888889999994 43311              001111111    1226999


Q ss_pred             eecCCCC------CeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC---CeEEEEe
Q psy16652        149 KEIQETD------AGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA---PTISWRR  219 (384)
Q Consensus       149 ~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~  219 (384)
                      .+++.+|      +|.|+|.+.+..+...+..+.|.+..+|..... .....+.+|+.+.|.|.+.+.+.   +.+.|++
T Consensus        64 ~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~  142 (388)
T 2v5m_A           64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT  142 (388)
T ss_dssp             CCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred             cccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence            9999987      999999999776554566778888776655433 44567899999999999977543   6899999


Q ss_pred             CCCcccccC-----c-eeEeccEEEEcCCCCCCC-eEEEEEEEeCCCCceee---EEEEEEEec-----CeEE-ecCCCc
Q psy16652        220 DNSAALSTG-----G-SIYRGNILKIPNITKTDR-GTYYCVAQNGVGRGMKR---NIAVEVEFA-----PVIT-INRPRQ  283 (384)
Q Consensus       220 ~~~~~~~~~-----~-~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~-~~~~~~  283 (384)
                      ++..+....     . ....+..|.|.+++.+|+ |.|+|.+.|..+.....   ...+.|..+     |.+. ......
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~  222 (388)
T 2v5m_A          143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL  222 (388)
T ss_dssp             TTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE
T ss_pred             CCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce
Confidence            987653221     1 122356899999999999 99999999975443211   124555543     2211 112334


Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEec------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIM------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      .+.+|+.+.|.|.+.|+|.+.+.|++++..+.      ...+..         .....|.|.+++.+|+|.|+|.|.|..
T Consensus       223 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~  293 (388)
T 2v5m_A          223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---------QVSGTLIIKDAVVEDSGKYLCVVNNSV  293 (388)
T ss_dssp             EEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE---------EETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee---------cccCEEEECcCCHHHCeEEEEEEecCC
Confidence            57789999999999999999999999754322      112211         135689999999999999999999999


Q ss_pred             cceEEEEEEEEeeeec
Q psy16652        358 GSAQKEIELFDRETQT  373 (384)
Q Consensus       358 g~~~~~~~l~v~~~~~  373 (384)
                      |.....+.|.|..+|.
T Consensus       294 g~~~~~~~l~V~~~p~  309 (388)
T 2v5m_A          294 GGESVETVLTVTAPLS  309 (388)
T ss_dssp             CEEEEEEEEEEEEEEE
T ss_pred             CceeEEEEEEEeCCCc
Confidence            9999999999988754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=4.7e-32  Score=243.64  Aligned_cols=290  Identities=13%  Similarity=0.206  Sum_probs=189.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+...+..+.+.+|++++|.|.+.+.+.    ..+.|++++.......+.............|+.+..  ......|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~   80 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTID   80 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEES
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeC
Confidence            4556677888999999999999877664    489999985322111111111111111245776655  4556789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCcc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAA  224 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~  224 (384)
                      +++.+|+|.|+|.+.+..+......+.|.|..   +|.+....+. ....+|+.+.|.|.+.+ .|.+ .+.|++++..+
T Consensus        81 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~  159 (438)
T 1qgc_4           81 PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  159 (438)
T ss_dssp             SCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence            99999999999999865544445556677653   3333221111 11235889999999977 6777 89999988765


Q ss_pred             ccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEE
Q psy16652        225 LST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAIL  293 (384)
Q Consensus       225 ~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l  293 (384)
                      ...           .+.......|.|.++..+|+|.|+|.|.|..+.. .....+.....+.....+....+.+|+.+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L  238 (438)
T 1qgc_4          160 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVESGGGLVKPGGSLKL  238 (438)
T ss_dssp             CTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEEECCEEECTTCCEEE
T ss_pred             CCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEecCCceEEecCCcEEE
Confidence            443           1112224579999999999999999999987654 2222222212222233345567889999999


Q ss_pred             EEEEeccC--CCeEEEEEC--CEEec-----------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        294 ECHVEAYP--PPAIVWIKD--GVQIM-----------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       294 ~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      .|.+.|.|  .+.+.|+++  +..+.                 ...++.+...   .......|.|.+++.+|+|.|+|.
T Consensus       239 ~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~  315 (438)
T 1qgc_4          239 SCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRD---NAKNTLYLQMSSLRSADTAMYYCV  315 (438)
T ss_dssp             EEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCCEEEEE
T ss_pred             EEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEee---cCCCeEEEEECCCChhhCEEEEEE
Confidence            99999988  679999996  44332                 1233333211   111245799999999999999999


Q ss_pred             EEeCCc-----ceEEEEEEEEee
Q psy16652        353 AANKYG-----SAQKEIELFDRE  370 (384)
Q Consensus       353 a~n~~g-----~~~~~~~l~v~~  370 (384)
                      |.|..+     .......|.|..
T Consensus       316 a~n~~~~~~~~~~~~~~~l~V~~  338 (438)
T 1qgc_4          316 RREDGGDEGFAYWGQGTVVTVSA  338 (438)
T ss_dssp             ECCSSSCCCCCSBCCCEEEEECS
T ss_pred             EEccCCCccceeeCCCEEEEEec
Confidence            999544     222334566553

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=100.00  E-value=1.6e-31  Score=229.42  Aligned_cols=271  Identities=12%  Similarity=0.108  Sum_probs=180.7

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+. ..+.+|++++|.|.+.+. ...+.|+|++.......                  ..  ......|.|
T Consensus        21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~------------------~~--~~~~~~L~I   78 (316)
T 3vh8_G           21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF------------------HG--RIFQESFNM   78 (316)
T ss_dssp             ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH------------------HH--CCBSSCEEE
T ss_pred             CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee------------------cC--CcceEEEEE
Confidence            446788888777 678899999999999776 67899999886521100                  00  112336999


Q ss_pred             eecCCCCCeeEEEEEEEccC----cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCC
Q psy16652        149 KEIQETDAGIYKCEVIISLN----NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN  221 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~  221 (384)
                      .+++.+|+|.|+|.+.+...    ...+..+.|.|...   |.+... +.. .+.+|+.++|.|.+.+ +.+.+.|++++
T Consensus        79 ~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~-~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g  155 (316)
T 3vh8_G           79 SPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH-PGP-LVKSGERVILQCWSDI-MFEHFFLHKEG  155 (316)
T ss_dssp             CSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEE-SCS-EEETTCCEEEEEEESS-CCSEEEEEETT
T ss_pred             CCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEec-CCC-ccCCCCeEEEEEcCCC-CCcEEEEEECC
Confidence            99999999999999875322    23456677777643   333221 222 3789999999999954 56789999998


Q ss_pred             CcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc----eeeEEEEEEEe---cCeEEecCCCcccccCC
Q psy16652        222 SAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRG----MKRNIAVEVEF---APVITINRPRQGQALQY  289 (384)
Q Consensus       222 ~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~---~p~~~~~~~~~~~~~g~  289 (384)
                      ..+......     ......|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|..   +|.+...+. ..+.+|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~  234 (316)
T 3vh8_G          156 ISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGE  234 (316)
T ss_dssp             CCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTS
T ss_pred             CccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCC
Confidence            766432211     1245689999999999999999999976642    24556677753   456655443 3678899


Q ss_pred             cEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc-----eEEEE
Q psy16652        290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS-----AQKEI  364 (384)
Q Consensus       290 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~  364 (384)
                      .++|.|.+.. |.+.+.|+++|..+.......    ..........|.|.+++  |+|.|+|.|.|..+.     .+..+
T Consensus       235 ~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~  307 (316)
T 3vh8_G          235 SVTLSCSSRS-SYDMYHLSREGGAHERRLPAV----RKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPL  307 (316)
T ss_dssp             CCEEEEEESS-CCSEEEEEETTSSCCEEEECE----ECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCE
T ss_pred             cEEEEEECCC-CCcEEEEEECCCcCCCceece----eccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcE
Confidence            9999999974 778999999997664221110    01111124679999999  999999999998763     45667


Q ss_pred             EEEEeeee
Q psy16652        365 ELFDRETQ  372 (384)
Q Consensus       365 ~l~v~~~~  372 (384)
                      .|.|.++|
T Consensus       308 ~l~V~g~p  315 (316)
T 3vh8_G          308 LVSVTGNP  315 (316)
T ss_dssp             EC------
T ss_pred             EEEEeCCC
Confidence            88887765

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=1.4e-33  Score=254.64  Aligned_cols=319  Identities=12%  Similarity=0.138  Sum_probs=189.1

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccc---------h--hHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEE
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVA---------G--PSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLK   93 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~   93 (384)
                      .+..+|.|.+++.+|+|.|.|.+.....         .  .+.. .. .+........+|.+...+....+.+|+.++|.
T Consensus        76 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  153 (457)
T 1hzh_H           76 ANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGK-GT-TVIVSSASTKGPSVFPLAPSSKSTSGGTAALG  153 (457)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCC-CE-EEEECSCCCBCCEEEEECCCSCCCTTCCEEEE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECC-cE-EEEecCCCCCCCeEEecCccccccCCCcEEEE
Confidence            3457899999999999999999976431         0  0000 00 00000112235666555555557899999999


Q ss_pred             EEeecC-CC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcce
Q psy16652         94 CSVQYA-DD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV  171 (384)
Q Consensus        94 C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  171 (384)
                      |.+.+. |. +.+.|++++.....     .........+++|...       ..|.|.+++.+| |.|+|.+.+..+. .
T Consensus       154 C~~~g~~P~~~~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~-~  219 (457)
T 1hzh_H          154 CLVKDYFPEPVTVSWNSGALTSGV-----HTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSN-T  219 (457)
T ss_dssp             EEEESBBSCCCEEEETTTTBCTTE-----EEEEEEECTTSCEEEE-------EEEEECSGGGGT-SCCEEEEEEGGGT-E
T ss_pred             EEEeEEeCCCeEEEEEeCCEeccc-----eEcCceECCCCCEEEE-------EEEEecccccCC-ceEEEEEEeCCCC-c
Confidence            999875 53 78999987754210     0000001122333322       369999999999 9999999875433 2


Q ss_pred             eeeEEEEEec-----------------CCccccCCCceE-EeecCceEEEEEEecccCCC----eEEEEeCCCcccccCc
Q psy16652        172 SAEVELIVRR-----------------PPIISDNSTRSV-IVSEGQTVYLYCYANGFPAP----TISWRRDNSAALSTGG  229 (384)
Q Consensus       172 ~~~~~l~v~~-----------------~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~----~v~W~~~~~~~~~~~~  229 (384)
                      .....+.+..                 +|.+....+... .+.+|+.+.|.|.+.+.+++    .+.|++++..+.....
T Consensus       220 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~  299 (457)
T 1hzh_H          220 KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT  299 (457)
T ss_dssp             EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEE
T ss_pred             ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccc
Confidence            2222222211                 122111111111 14679999999999887543    8999999976543211


Q ss_pred             e---eEeccEEEEc---CCCCCC---CeEEEEEEEeCCCCceeeEEEE----EEEecCeEEecCCCcccccCCcEEEEEE
Q psy16652        230 S---IYRGNILKIP---NITKTD---RGTYYCVAQNGVGRGMKRNIAV----EVEFAPVITINRPRQGQALQYDAILECH  296 (384)
Q Consensus       230 ~---~~~~~~l~i~---~~~~~d---~G~Y~C~~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~~~~~g~~~~l~C~  296 (384)
                      .   ...++.+.+.   .+...|   +|.|+|.|.|..+.. .....+    .+..+|.+.+.+.......+..+.|.|.
T Consensus       300 ~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~  378 (457)
T 1hzh_H          300 KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCL  378 (457)
T ss_dssp             EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS-CEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred             ccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC-cceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEE
Confidence            1   1112233332   233444   999999999865443 222233    3456787776554433333444999999


Q ss_pred             EeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        297 VEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       297 ~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +.|.+++  .|.|+++|..+.............+.....+.|.|.....+|.|.|+|.|.|.....
T Consensus       379 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          379 VKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             EEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            9996444  899999999885432221111111111223456666666788999999999986543

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=9.9e-35  Score=260.48  Aligned_cols=314  Identities=12%  Similarity=0.178  Sum_probs=196.0

Q ss_pred             CceEEEEEeeecceEEEEEEEeeeccc--hhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCc
Q psy16652         26 KPIRFFIHEVTGEKVTSVILLFKMSVA--GPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDY  102 (384)
Q Consensus        26 ~~~~l~i~~~~~~d~G~y~c~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~  102 (384)
                      +..+|.|.+++.+|+|.|.|.+.....  .....     +........+|.+...+....+.+|+.++|.|.+.+. |.+
T Consensus        76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-----l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p  150 (434)
T 1igy_B           76 NTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTT-----VTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  150 (434)
T ss_dssp             CBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEE-----CEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSC
T ss_pred             CEEEEEECCCChHHCEEEEEEEEccccccCCceE-----EEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCC
Confidence            456899999999999999999876311  00000     0000112245666544444456899999999999875 554


Q ss_pred             -cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        103 -PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       103 -~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                       .+.|++++....     ...... ....+.|...       ..|.|.+++.+| |.|+|.+.+..+.. .....+.+..
T Consensus       151 ~~v~W~k~~~~~~-----~~~~~~-~~~~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~  215 (434)
T 1igy_B          151 VTVTWNSGSLSSG-----VHTFPA-VLQSDLYTLS-------SSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRD  215 (434)
T ss_dssp             CEEEETTTTBCSS-----EEECCC-EECSSCEEEE-------EEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCC
T ss_pred             eEEEEeeCCcCCC-----eEecCc-eecCCcEEEE-------EEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCC
Confidence             999998775411     000000 0111333332       369999999889 99999998665432 1222222110


Q ss_pred             ---------C---CccccCCCceE-EeecCceEEEEEEecccC----CCeEEEEeCCCcccccCc---------eeEecc
Q psy16652        182 ---------P---PIISDNSTRSV-IVSEGQTVYLYCYANGFP----APTISWRRDNSAALSTGG---------SIYRGN  235 (384)
Q Consensus       182 ---------~---~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~---------~~~~~~  235 (384)
                               .   |.+....+... .+.+|+.+.|.|.+.+.+    .+.+.|++++..+.....         .....+
T Consensus       216 ~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~  295 (434)
T 1igy_B          216 CGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVS  295 (434)
T ss_dssp             CCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCC
T ss_pred             CCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEE
Confidence                     0   12111111111 167899999999998873    358999999876542211         111234


Q ss_pred             EEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEEC
Q psy16652        236 ILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKD  310 (384)
Q Consensus       236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~  310 (384)
                      .|.|.++..+|+|.|+|.|.|..+.. ....+.+  .+..+|.+.+.+.......|+.+.|.|.+.|. |++ .|.|+++
T Consensus       296 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~  375 (434)
T 1igy_B          296 ALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSD  375 (434)
T ss_dssp             CEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEET
T ss_pred             EEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEEC
Confidence            79999999999999999999987753 1223332  45567777665554444467789999999985 433 8999999


Q ss_pred             CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      |..+.............+.....+.|.|.....+|.|.|+|.|.|....
T Consensus       376 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          376 GQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             TSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             CEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            9887432211111111111122345777777788899999999998654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.98  E-value=1.3e-30  Score=218.01  Aligned_cols=246  Identities=18%  Similarity=0.259  Sum_probs=178.5

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeec-CCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQY-ADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      ..+|.+..   +..+.+|++++|.|.+.+ .|.+  .+.|++++.....                  .+...  ..  .|
T Consensus         4 ~~~p~~~~---~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~------------------~~~~~--~~--~~   58 (265)
T 2oz4_A            4 ATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP------------------TVTYG--ND--SF   58 (265)
T ss_dssp             SSCCEEEC---CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC------------------EEEEC--SS--EE
T ss_pred             CCCCcccc---CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc------------------eEeeC--CC--eE
Confidence            34555543   336899999999999988 5654  9999998754211                  11111  11  34


Q ss_pred             EEeec---CCCCCee--EEEEEEEccCcceeeeEEEEEecCC--ccccCCCceEEeecCceEEEEEEecccCCCeEEEEe
Q psy16652        147 SIKEI---QETDAGI--YKCEVIISLNNKVSAEVELIVRRPP--IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR  219 (384)
Q Consensus       147 ~i~~~---~~~d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~  219 (384)
                      .+..+   +..|+|.  |+|.+.+.. +..+..+.|.|...|  .+.   .....+.+|+.+.|.|.+.  |.+.+.|  
T Consensus        59 ~~~~~~~~~~~d~g~g~Y~C~a~n~~-~~~~~~~~l~V~~~p~p~~~---~~~~~v~~G~~v~l~C~~~--p~~~i~W--  130 (265)
T 2oz4_A           59 SAKASVSVTAEDEGTQRLTCAVILGN-QSQETLQTVTIYSFPAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL--  130 (265)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEEETT-EEEEEEEEEEEECCCCCEEE---ESCSEEETTCEEEEEEECC--TTSEEEE--
T ss_pred             EEEeecccccccCCcceEEEEEecCC-CCcEEEEEEEEeCCCCceee---cCCceecCCCcEEEEEEcc--CCCEEEE--
Confidence            44444   7788884  999998654 345667788887533  332   2344578899999999998  8889999  


Q ss_pred             CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCC-CCce--eeEEEEEEEecCeEEec--CCCcccccCCcEEEE
Q psy16652        220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV-GRGM--KRNIAVEVEFAPVITIN--RPRQGQALQYDAILE  294 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~  294 (384)
                      ++..+....    ....|.|..+..+|+|.|+|.+.|.. |...  +..+.|.|.++|.+...  +....+.+|+.+.|.
T Consensus       131 ~g~~~~~~~----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~  206 (265)
T 2oz4_A          131 NGVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM  206 (265)
T ss_dssp             SSCSSSCCS----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCC
T ss_pred             CCEEccCCC----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEE
Confidence            666553221    23458889999999999999998644 5532  36788889888887554  334567889999999


Q ss_pred             EEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       295 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      |.+.|.|.|.+.|+++|..+..                ...+  ..++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       207 C~~~g~P~p~i~W~~~~~~~~~----------------~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          207 CQAWGNPLPELKCLKDGTFPLP----------------IGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             CCCEEESCCEEEEEETTTEECC----------------TTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eECccCCCCeEEEEECCcccCC----------------CCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            9999999999999999872211                1222  23778999999999999999999999999874

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.98  E-value=1.2e-30  Score=234.61  Aligned_cols=281  Identities=17%  Similarity=0.257  Sum_probs=187.2

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++++|.|.+.+.+  ...+.|++.........+.... .+.    .....+|+.+..+...+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR   85 (444)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence            35566789999999999998753  5689999975432111111111 010    0113468887765456678999999


Q ss_pred             cCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCC
Q psy16652        151 IQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNS  222 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~  222 (384)
                      ++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+....+. ..+.+|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  164 (444)
T 1igt_B           86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  164 (444)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence            9999999999999865433  233446777763    2322211111 124689999999999874 766 999999886


Q ss_pred             ccccc-------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE------------------EecCeEE
Q psy16652        223 AALST-------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV------------------EFAPVIT  277 (384)
Q Consensus       223 ~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~  277 (384)
                      .+...       .+.......|.|.++..+| |.|+|.|.|..+.. .....+.+                  ..+|.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~  242 (444)
T 1igt_B          165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVF  242 (444)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEE
T ss_pred             CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEE
Confidence            53110       1222234579999999889 99999999987764 22333322                  1256553


Q ss_pred             ecCCCcc--cccCCcEEEEEEEeccC----CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        278 INRPRQG--QALQYDAILECHVEAYP----PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       278 ~~~~~~~--~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +.++...  +.+|+.+.|.|.+.|.|    .+.+.|+++|..+.............+.....+.|.|..++.+|.|.|+|
T Consensus       243 ~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C  322 (444)
T 1igt_B          243 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKC  322 (444)
T ss_dssp             EECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEE
T ss_pred             ecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEE
Confidence            4344333  47899999999999974    35999999998886543222121111112235679999999999999999


Q ss_pred             EEEeCCcceE
Q psy16652        352 KAANKYGSAQ  361 (384)
Q Consensus       352 ~a~n~~g~~~  361 (384)
                      .|.|..|...
T Consensus       323 ~a~n~~~~~~  332 (444)
T 1igt_B          323 KVNNKDLPAP  332 (444)
T ss_dssp             EEECTTCSSC
T ss_pred             EEEcCCCCCc
Confidence            9999998773

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.97  E-value=2e-30  Score=225.22  Aligned_cols=281  Identities=16%  Similarity=0.258  Sum_probs=179.9

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++++|.|.+.+.  +.+.+.|+|++.......+.... .+...    ...+|+.+..+......+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            3556678999999999999875  36789999985321111111110 00000    12467877765456678999999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCcc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSAA  224 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~  224 (384)
                      ++.+|+|.|+|.+.+. .........|.|..    +|.+.... ....+.+|+.+.|.|.+.|. |. +.+.|++++..+
T Consensus        86 v~~~D~G~Y~C~~~n~-~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  163 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLN-MAYWGQGTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS  163 (344)
T ss_dssp             CCGGGCEEEEEEETTT-TCEECCCEEEEECSSCCBCCEEEEEC-CSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred             CCcccCEEEEEEEecC-cceecCcEEEEEecCCCCCCeEEEcc-ccccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence            9999999999999752 22344556777763    23222111 11225689999999999885 54 699999988653


Q ss_pred             cc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEE----------------------EEEec
Q psy16652        225 LS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAV----------------------EVEFA  273 (384)
Q Consensus       225 ~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l----------------------~v~~~  273 (384)
                      ..        ..+.......|.|.++..+| |.|+|.|.|..+... ...+.+                      .+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~  242 (344)
T 1za6_B          164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE  242 (344)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred             ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence            21        11222233479999998878 999999999776531 122211                      12356


Q ss_pred             CeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      |.+.+.++......|+.++|.|.+.|. | .+.+.|+++|..+.............+.....+.|.|.....+|.|.|+|
T Consensus       243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC  322 (344)
T 1za6_B          243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSC  322 (344)
T ss_dssp             CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEE
T ss_pred             CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEE
Confidence            776665544434457779999999995 4 35899999998875432222211111111223456666666778999999


Q ss_pred             EEEeCCcceE
Q psy16652        352 KAANKYGSAQ  361 (384)
Q Consensus       352 ~a~n~~g~~~  361 (384)
                      .|.|......
T Consensus       323 ~a~~~~l~~~  332 (344)
T 1za6_B          323 SVMHEALHNH  332 (344)
T ss_dssp             EEECTTSTTS
T ss_pred             EEEcCCCCCC
Confidence            9999876543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=5.7e-29  Score=225.53  Aligned_cols=288  Identities=14%  Similarity=0.216  Sum_probs=184.6

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEEEE
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+....+.+|++++|.|.+.+.+  ...+.|++.........+.... .+.    .....+|+.+..+......+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence            3446677889999999999997653  5689999975332111111111 100    11234678777654556789999


Q ss_pred             eecCCCCCeeEEEEEEEccCc-----ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-C-eEE
Q psy16652        149 KEIQETDAGIYKCEVIISLNN-----KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-P-TIS  216 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~v~  216 (384)
                      .+++.+|+|.|+|.+.+..+.     .....+.|.|..    +|.+....+  ..+.+|+.+.|.|.+.|. |. + .+.
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL--CSTQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc--cccCCCCeEEEEEEEeeecCCCceEEE
Confidence            999999999999999865432     223445677653    233322211  123689999999999885 65 4 999


Q ss_pred             EEeCCCcccc---------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE----------------
Q psy16652        217 WRRDNSAALS---------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----------------  271 (384)
Q Consensus       217 W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----------------  271 (384)
                      |++++.....         ..+.....+.|.|..+..+|+|.|+|.|.|..+......+.+.|.                
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~  242 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSP  242 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCC
Confidence            9988743211         111122234688888988999999999999876433344443331                


Q ss_pred             --ecCeEEecCC-CcccccCCcEEEEEEEeccCC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        272 --FAPVITINRP-RQGQALQYDAILECHVEAYPP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       272 --~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                        .+|.+.+.++ ...+.+|+.+.|.|.+.|.++   +.+.|  ++..+.............+.....+.|.|..++.+|
T Consensus       243 ~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d  320 (475)
T 1iga_A          243 SCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH  320 (475)
T ss_pred             CCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhcc
Confidence              2444433333 333588999999999998754   58999  444443221111111111111235679999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEE
Q psy16652        346 FGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .|.|+|.|.|..|.......|.
T Consensus       321 ~G~Y~C~a~n~~~~~~~~~~v~  342 (475)
T 1iga_A          321 GKTFTCTAAYPESKTPLTATLS  342 (475)
T ss_pred             CCcEEEEEEcCCCCCceEEEee
Confidence            9999999999999865555553

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=224.96  Aligned_cols=330  Identities=13%  Similarity=0.123  Sum_probs=194.0

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccc---------hhHHHHH-HHHHhhhhcccCCCCeeeeCc-ceeeeccCcEEEE
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVA---------GPSIIVA-LSFLISLASSQRTPTISYISQ-EQIKDIAQTADLK   93 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~p~~~~~~~-~~~v~~g~~v~l~   93 (384)
                      .+..+|.|.+++.+|+|.|+|.+.....         .....+. -..+........+|.+..... ......|+.++|.
T Consensus        77 ~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~  156 (512)
T 1zvo_C           77 RNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLA  156 (512)
T ss_pred             CCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEE
Confidence            3468999999999999999999876421         0000000 000000111223555542221 1112356899999


Q ss_pred             EEeecC-CC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcce
Q psy16652         94 CSVQYA-DD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV  171 (384)
Q Consensus        94 C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  171 (384)
                      |.+.+. |. ..+.|++++...   .  ..........++.|...       ..|.|.....+ .|.|+|.+.+..+...
T Consensus       157 C~~~g~~P~p~~v~W~~~~~~~---~--~~~~~~~~~~~g~~~~~-------s~L~i~~~~~~-~g~ytC~v~n~~~~~~  223 (512)
T 1zvo_C          157 CLITGYHPTSVTVTWYMGTQSQ---P--QRTFPEIQRRDSYYMTS-------SQLSTPLQQWR-QGEYKCVVQHTASKSK  223 (512)
T ss_pred             EEEEeeecCceEEEEEcCcccC---c--eEecCceecCCCCEEEE-------EEEEEcHHHcC-CceEEEEEEeCCCCce
Confidence            999886 54 489999954321   0  00011111122344333       26889888777 8999999997654422


Q ss_pred             eee----------EEEEEecCC----------------------------------------------------ccccCC
Q psy16652        172 SAE----------VELIVRRPP----------------------------------------------------IISDNS  189 (384)
Q Consensus       172 ~~~----------~~l~v~~~~----------------------------------------------------~~~~~~  189 (384)
                      ...          ..+.+..+|                                                    .+....
T Consensus       224 ~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~  303 (512)
T 1zvo_C          224 KEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT  303 (512)
T ss_pred             EEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEEC
Confidence            111          123332222                                                    111111


Q ss_pred             CceEEeecCceEEEEEEecccCC--CeEEEEeCCCccccc----------CceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNSAALST----------GGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +....+.+|+.+.|.|.+.+..+  ..++|++++..+...          ++.....+.|.|.....+|+|.|+|.|.|.
T Consensus       304 p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~  383 (512)
T 1zvo_C          304 PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP  383 (512)
T ss_pred             CChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence            22223457999999999988533  389999998764411          111122346999999999999999999997


Q ss_pred             CCCceeeEEEEEE----EecCeEEecCCCcccccCCcEE-EEEEEeccCCC--eEEEEECCEEecCCCcee--eeeeecc
Q psy16652        258 VGRGMKRNIAVEV----EFAPVITINRPRQGQALQYDAI-LECHVEAYPPP--AIVWIKDGVQIMNNQHYS--VSHFATS  328 (384)
Q Consensus       258 ~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~--~~~~~~~  328 (384)
                      .+....+.+....    ..+|.+.+.++..   .|+.+. |.|.+.|.+++  .+.|+++|..+.......  ......+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg  460 (512)
T 1zvo_C          384 SLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGS  460 (512)
T ss_pred             CCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCC
Confidence            6653222222211    2457665544333   788899 99999985443  689999999986543211  1111111


Q ss_pred             C-ccccceEEEeecCCCCCeEEEEEEEeCCcceE--EEEEEEEee
Q psy16652        329 D-EFSDTSLRVITIERRQFGQYACKAANKYGSAQ--KEIELFDRE  370 (384)
Q Consensus       329 ~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~  370 (384)
                      . ....+.|.|.....+|.|.|+|.|.|......  ..++|.|..
T Consensus       461 ~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          461 TTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             CEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence            1 12234577777777789999999999876543  444454443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=5e-29  Score=210.67  Aligned_cols=244  Identities=19%  Similarity=0.243  Sum_probs=178.0

Q ss_pred             CCCCCcchhccccCCCCCCC--CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652          2 IAPSPFDFVNRFQNTSTPWD--PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS   79 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   79 (384)
                      |.+.+.|++|+..+......  ....+..+|.|.+++.+|+|.|.|.+.+........      .. .....+|.+....
T Consensus        33 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~------~~-l~V~~~p~~~~~~  105 (284)
T 2rik_A           33 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS------AQ-LGVQEPPRFIKKL  105 (284)
T ss_dssp             SCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE------EE-EEEECCCEEEECC
T ss_pred             CCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEE------EE-EEccCCCcccccC
Confidence            56789999998665533210  012356899999999999999999998753221110      00 0122345544433


Q ss_pred             -cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         80 -QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        80 -~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                       ....+.+|+.+.|.|.+.+.|.+.+.|++++...              ....++.+..  ......|.|.+++.+|+|.
T Consensus       106 ~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~  169 (284)
T 2rik_A          106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI--------------QESSKFRMSF--VESVAVLEMYNLSVEDSGD  169 (284)
T ss_dssp             CSEEEEETTCCEEEEEEEESSSCCEEEEEETTEEC--------------CCSSSEEEEE--ETTEEEEEECSCCGGGCEE
T ss_pred             CCceEecCCceEEEEEEEeeeCCCEEEEEECCEEC--------------cCCCcEEEEE--cCCEEEEEECCCCcccCEE
Confidence             3445889999999999998888899999977542              1223333333  2345689999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe----c
Q psy16652        159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----G  234 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~  234 (384)
                      |+|.+.+.. +..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.........    .
T Consensus       170 Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  247 (284)
T 2rik_A          170 YTCEAHNAA-GSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL  247 (284)
T ss_dssp             EEEEEECSS-CEEEEEEEEEEECCCBCCSC-CCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTE
T ss_pred             EEEEEEcCC-CceeEEEEEEEecCCcceeC-CCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCE
Confidence            999998554 45677888999888876643 45567889999999999999999999999999877655443322    1


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       248 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  283 (284)
T 2rik_A          248 TSIHILNVDSADIGEYQCKASNDVGSY-TCVGSITLK  283 (284)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEEcCCCcccCEEEEEEEEeCCCce-eEEEEEEEc
Confidence            479999999999999999999998875 566677664

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.97  E-value=5.5e-29  Score=212.64  Aligned_cols=258  Identities=20%  Similarity=0.261  Sum_probs=185.0

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++....             ..+.++.+... ..+...|.|.+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~-~~~~~~L~i~~   68 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-------------ADGLKYRIQEF-KGGYHQLIIAS   68 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECC-------------CCSSSEEEEEE-TTTEEEEEESS
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcc-------------cCCCeEEEEEC-CCCEEEEEEcc
Confidence            57888888999999999999999999888888999999775421             11234444322 34556899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccC----CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN----STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS  226 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~----~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~  226 (384)
                      ++.+|+|.|+|.+.+.. +..+..+.|.|..++.+...    ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        69 v~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~  147 (305)
T 2nzi_A           69 VTDDDATVYQVRATNQG-GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN  147 (305)
T ss_dssp             CCGGGCSEEEEEEEETT-EEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCS
T ss_pred             CChhhCeEEEEEEEcCC-CCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCC
Confidence            99999999999998654 44677778888765543321    12456788999999999999999999999999887765


Q ss_pred             cCceeE----eccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE----
Q psy16652        227 TGGSIY----RGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV----  297 (384)
Q Consensus       227 ~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~----  297 (384)
                      ......    ....|.|.+ +..+|+|.|+|.+.|..|.. ...+.|.|...|..... .......+..+.|.|..    
T Consensus       148 ~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~p~~-~~~~~~~~~~v~l~w~~p~~~  225 (305)
T 2nzi_A          148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADVPDPPRG-VKVSDVSRDSVNLTWTEPASD  225 (305)
T ss_dssp             SSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEE-EEEEEEEEEBCCCCCEE-EEEESCCSSCEEEEEECCSCC
T ss_pred             CCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCce-eeEEEEEEecCCCCCCC-ceeeeccCCEEEEEEcCCccC
Confidence            443322    235799999 99999999999999998875 66788888766531110 00111233455555553    


Q ss_pred             ----------eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        298 ----------EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       298 ----------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                                ...+.+...|.+.+..                  ....+.|.++...+.|.|+|.|.|..|....+
T Consensus       226 g~~~i~~y~v~~~~~~~~~w~~~~~~------------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          226 GGSKITNYIVEKCATTAERWLRVGQA------------------RETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             SBSCEEEEEEEEEETTSCCEEEEEEE------------------SSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             CCCceeEEEEEEecCCCCccEECccc------------------cCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence                      3333333333332211                  25678999999999999999999999977644

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=2e-29  Score=227.54  Aligned_cols=280  Identities=18%  Similarity=0.312  Sum_probs=178.0

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++++|.|.+.+.+  ...+.|++.........+.... .+..    ....+|+.+..+.......|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            35567789999999999998765  6789999975432112111111 1110    112468887765456678999999


Q ss_pred             cCCCCCeeEEEEEEEccC---------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-C
Q psy16652        151 IQETDAGIYKCEVIISLN---------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-P  213 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~  213 (384)
                      ++.+|+|.|+|.+.+..+         .  .......|.|..    +|.+.... ....+.+|+.+.|.|.+.+. |. +
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~  164 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPEPV  164 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEEC-CCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecC-ccccccCCCcEEEEEEEeEEeCCCe
Confidence            999999999999986543         0  233456677764    33332211 11235789999999999875 64 7


Q ss_pred             eEEEEeCCCccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE--------------
Q psy16652        214 TISWRRDNSAALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE--------------  271 (384)
Q Consensus       214 ~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~--------------  271 (384)
                      .+.|++++..+...        .+.......|.|.++..+| |.|+|.+.|..+.. .....+.+.              
T Consensus       165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~  242 (457)
T 1hzh_H          165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAP  242 (457)
T ss_dssp             EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCC
T ss_pred             EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCc
Confidence            99999988643211        1112223479999999989 99999999976543 223333322              


Q ss_pred             ---ecCeEEecCCC-cc-cccCCcEEEEEEEeccCCC----eEEEEECCEEecCCCceeeeeeeccCccccceEEEee--
Q psy16652        272 ---FAPVITINRPR-QG-QALQYDAILECHVEAYPPP----AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT--  340 (384)
Q Consensus       272 ---~~p~~~~~~~~-~~-~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~--  340 (384)
                         .+|.+.+.++. .. +.+|+.+.|.|.+.|.|++    .+.|++++..+..........      ..++.+.+..  
T Consensus       243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~------~~~g~~~~~~~l  316 (457)
T 1hzh_H          243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE------QYNSTYRVVSVL  316 (457)
T ss_dssp             CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEE------CTTSCEEEEEEE
T ss_pred             cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccccee------cCCCcEEEEEEE
Confidence               24554333333 22 5679999999999997653    999999998886432211111      0122333332  


Q ss_pred             -cCCCC---CeEEEEEEEeCCcceEEEEEE
Q psy16652        341 -IERRQ---FGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       341 -~~~~d---~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                       +...|   .|.|+|.|.|..+.......+
T Consensus       317 ~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v  346 (457)
T 1hzh_H          317 TVLHQDWLNGKEYKCKVSNKALPAPIEKTI  346 (457)
T ss_dssp             CCCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred             EECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence             23444   999999999987665444333

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.96  E-value=1.5e-29  Score=217.71  Aligned_cols=277  Identities=14%  Similarity=0.202  Sum_probs=172.0

Q ss_pred             cCCCCeeeeCcceeeecc--CcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEE
Q psy16652         70 QRTPTISYISQEQIKDIA--QTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI  145 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g--~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (384)
                      ..+|.+.+.+.......|  +++.|.|.+.+. | .+.+.|++++.........    ......++.+...       ..
T Consensus         5 ~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~----~~~~~~~g~~~~~-------s~   73 (323)
T 2wqr_A            5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLST----ASTTQEGELASTQ-------SE   73 (323)
T ss_dssp             CCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEE----EEEEEETTEEEEE-------EE
T ss_pred             CCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceec----CCcCccCCcEEEE-------EE
Confidence            345666665544443344  699999999875 3 5789999987543211000    0001113333332       26


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe---cCCccccCCCceEEeecCceEEEEEEeccc-CCC---eEEEE
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP---TISWR  218 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~v~W~  218 (384)
                      |.|.+...+|+|.|+|.+.+..+ .....+.+.+.   ..|.+....+....+.+|+.+.|.|.+.+. |.+   .+.|+
T Consensus        74 l~i~~~~~~d~g~Y~C~a~n~~~-~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~  152 (323)
T 2wqr_A           74 LTLSQKHWLSDRTYTCQVTYQGH-TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWS  152 (323)
T ss_dssp             EEEEHHHHHTTCCEEEEEEETTE-EEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEE
T ss_pred             EEEcHHHcCCCCcEEEEEEeCCC-CcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEE
Confidence            88988888899999999986542 22222211000   112222222333346789999999999875 455   89999


Q ss_pred             eCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE----EEecCeEEecCCCccc
Q psy16652        219 RDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE----VEFAPVITINRPRQGQ  285 (384)
Q Consensus       219 ~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~  285 (384)
                      +++......         .+.......|.|.+++.+|+|.|+|.+.|..... .....+.    +..+|.+.+.+.....
T Consensus       153 k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~~  231 (323)
T 2wqr_A          153 RASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR-ALMRSTTKTSGPRAAPEVYAFATPEWP  231 (323)
T ss_dssp             ETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS-CEEEEECCCCSCCBCCEEEEEECCCCT
T ss_pred             ECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC-CeeeEEEccCCCCCCCEEEEeCCChHH
Confidence            975333221         1111234579999999999999999999976432 2223332    2356776654333223


Q ss_pred             ccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        286 ALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       286 ~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ..|+.++|.|.+.| .|++ .|.|+++|..+.........  ....+.....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       232 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          232 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             hcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            34999999999998 4544 89999999988643211110  011111223467999999999999999999999887

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.96  E-value=3.7e-27  Score=208.36  Aligned_cols=274  Identities=17%  Similarity=0.217  Sum_probs=190.7

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEe--CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKM--DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.|.. +.+..+.+|++++|.|.+.+.|.+.+.|+++  +...       ..  .....+.++.+..  ......|.|.
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~-------~~--~~~~~~~~~~~~~--~~~~~~L~i~   68 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTF-------TE--GDKSLDGRIEVKG--QHGSSSLHIK   68 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEE-------CC----CCSSSSEEEEE--CSSEEEEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCcee-------cc--CcCCCCCeEEEec--cCCcceEEEc
Confidence            356665 5667788899999999999988889999997  3221       10  0111245666655  3557789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC-
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG-  228 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~-  228 (384)
                      +++.+|+|.|+|.+.|.. +..+..+.|.|..+|.+.. ......+.+|+.+.|.|.+.+.|.+.+.|++++..+.... 
T Consensus        69 ~v~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~  146 (389)
T 2jll_A           69 DVKLSDSGRYDCEAASRI-GGHQKSMYLDIEYAPKFIS-NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT  146 (389)
T ss_dssp             SCCGGGCEEEEEEEECSS-CEEEEEEEEEEEEEEEECC-SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTC
T ss_pred             ccChhhCEEEEEEEEeCC-CCcceEEEEEEEeCCEEec-CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccC
Confidence            999999999999998654 4467788899988877653 2344568899999999999999999999999987765443 


Q ss_pred             -ceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec----
Q psy16652        229 -GSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA----  299 (384)
Q Consensus       229 -~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----  299 (384)
                       ....    ....|.|.++..+|+|.|+|.|.|..|.. ...+.+.+...|..... .......+..+.|.|....    
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~~~~g  224 (389)
T 2jll_A          147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGG  224 (389)
T ss_dssp             TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEECCCCCCCEE-EEEEEECSSCEEEEEECCSCCTT
T ss_pred             ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEecCCCCCCcc-eEEeeccCCEEEEEEeCCCCCCC
Confidence             1111    13479999999999999999999998875 55566666554421100 0011223467888887522    


Q ss_pred             cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        300 YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       300 ~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|..  .+.|..++...     +....    .......+.|.++...+.|.|.|.|.|..|....+..+.+..
T Consensus       225 ~pi~~y~v~~~~~~~~~-----~~~~~----~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t  288 (389)
T 2jll_A          225 VPIHHYQVDVKEVASEI-----WKIVR----SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT  288 (389)
T ss_dssp             SCEEEEEEEEEETTCSC-----CEEEE----CSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             cceEEEEEEEEECCCcc-----cEEee----ccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe
Confidence            2222  46787766421     11110    111346799999999999999999999999765544444443

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=216.02  Aligned_cols=255  Identities=20%  Similarity=0.242  Sum_probs=163.0

Q ss_pred             CCCCCcchhccccCCCCCCCC---CCCCceEEEEEeeec-ceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeee
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDP---STQKPIRFFIHEVTG-EKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISY   77 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~-~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   77 (384)
                      |.+.+.|++|+..+.......   ......+|.|.+++. +|+|.|.|.+.+..+.......+........+...|.+..
T Consensus        34 p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~  113 (304)
T 2yd9_A           34 PKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM  113 (304)
T ss_dssp             SCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEE
T ss_pred             CCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeec
Confidence            667899999987654332111   122347899999998 9999999998875332111000000000011122367777


Q ss_pred             eCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++++......           ....++....     ...|.|.+++.+|+|
T Consensus       114 ~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----------~~~~~~~~~~-----~~~L~i~~~~~~d~G  177 (304)
T 2yd9_A          114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS-----------ASNGRIKQLR-----SGALQIESSEETDQG  177 (304)
T ss_dssp             CCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGG-----------GGTTSEEECT-----TSCEEECSCCGGGCE
T ss_pred             CCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCC-----------CCcceEEeCC-----CeEEEEccCCcccCE
Confidence            777788999999999999998888899999977542110           0011222111     126999999999999


Q ss_pred             eEEEEEEEccCcceeeeEEEEEe---cCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652        158 IYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG  234 (384)
Q Consensus       158 ~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  234 (384)
                      .|+|.+.+..+...+....+.|.   .+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+..........
T Consensus       178 ~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~  256 (304)
T 2yd9_A          178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL-PMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR  256 (304)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECCCEEEEEEEC-CCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSE
T ss_pred             EEEEEEEeCCCCEEeccEEEEEEeeccCCcEEec-CCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCc
Confidence            99999997665444333455553   33433322 334567899999999999999999999999988776554433333


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                      ..|.+.++  +|+|.|+|.|.|..|.. +..+.|.|..++.+
T Consensus       257 ~~L~i~~~--~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          257 NVLELTDV--KDSANYTCVAMSSLGVI-EAVAQITVKSLPKA  295 (304)
T ss_dssp             EEEEECSC--CSCEEEEEEEEETTEEE-EEEEEEC-------
T ss_pred             EEEEEccc--ccCEEEEEEEEeCCCcE-EEEEEEEEecCccc
Confidence            45777665  68999999999998876 67788888877654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.96  E-value=3e-29  Score=215.51  Aligned_cols=246  Identities=17%  Similarity=0.179  Sum_probs=166.6

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      |.+.+.|++|+..+....-.....+..+|.|.+++.+|+|.|.|.+.+..........+...       ..|.+...+..
T Consensus        35 p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~-------~~~~~~~~~~~  107 (317)
T 2y25_A           35 KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-------AFKELMMEVCK  107 (317)
T ss_dssp             TTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTH-------HHHHHHHHHHH
T ss_pred             CCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEe-------cCccccccCCc
Confidence            56789999998666543322333556899999999999999999987642211110000000       00111111223


Q ss_pred             eeeeccCcEEEEEEeec----------CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         82 QIKDIAQTADLKCSVQY----------ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~----------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ..+.+|+.+.|.|...+          .+.+.+.|++++...              ....++.+..  ......|.|.++
T Consensus       108 ~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~~~  171 (317)
T 2y25_A          108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI--------------RYSDRVKTGV--TGEQIWLQINEP  171 (317)
T ss_dssp             HHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBC--------------CCCSSEEEEE--CSSEEEEEEESC
T ss_pred             eecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEEC--------------CCCCCeEEec--cCCEEEEEECcC
Confidence            33567777777777665          578899999987653              2234455444  445668999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEec--------------------CCccccCCCceEEeecCceEEEEEEecccC
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRR--------------------PPIISDNSTRSVIVSEGQTVYLYCYANGFP  211 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~  211 (384)
                      +.+|+|.|+|.+.+.. +.....+.|.+..                    +|.+....+....+.+|+.+.|.|.+.+.|
T Consensus       172 ~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p  250 (317)
T 2y25_A          172 TPNDKGKYVMELFDGK-TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP  250 (317)
T ss_dssp             CGGGCEEEEEEEECSS-CEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSS
T ss_pred             CcccCeeEEEEEEeCC-ceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCC
Confidence            9999999999998643 4444555554421                    122222234556789999999999999999


Q ss_pred             CCeEEEEeCCCcccccCceeEec-----cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        212 APTISWRRDNSAALSTGGSIYRG-----NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       212 ~~~v~W~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      .+.+.|++++..+..........     ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       251 ~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  315 (317)
T 2y25_A          251 PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFI  315 (317)
T ss_dssp             CCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEEc
Confidence            99999999998876655443332     289999999999999999999998875 6777777764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=2.3e-30  Score=232.12  Aligned_cols=278  Identities=14%  Similarity=0.230  Sum_probs=181.0

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-C----ceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-G----SLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++++|.|.+.+.+  ...+.|++++.......+..... +    ......+|+.+..+...+..+|.|.++
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            4556789999999999998753  56899999763211111111100 0    011134577766543345668999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAAL  225 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~  225 (384)
                      +.+|+|.|+|.+.+. .........|.|..    +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++++....
T Consensus        86 ~~~D~G~Y~C~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~  163 (434)
T 1igy_B           86 TSDDSAVYYCVREGE-VPYWGQGTTVTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  163 (434)
T ss_dssp             CGGGCSEECCCCSSS-SCCCCCCEECEECCSCCBCCCEEEECC-CCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred             ChHHCEEEEEEEEcc-ccccCCceEEEEccCCCCCCeEEEcCC-ccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence            999999999999753 22334456677753    233221111 1224789999999999875 666 999999886431


Q ss_pred             c-------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe----------c--CeEEecCCCcc--
Q psy16652        226 S-------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF----------A--PVITINRPRQG--  284 (384)
Q Consensus       226 ~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----------~--p~~~~~~~~~~--  284 (384)
                      .       ..+.......|.|.+++.+| |.|+|.|.|..+.. .....+.+..          .  |.+.+.++...  
T Consensus       164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~  241 (434)
T 1igy_B          164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDT  241 (434)
T ss_dssp             EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHH
T ss_pred             eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHh
Confidence            1       01222234579999999888 99999999987764 2223332210          0  44433343323  


Q ss_pred             cccCCcEEEEEEEeccC----CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        285 QALQYDAILECHVEAYP----PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +.+|+.+.|.|.+.|.+    .+.|.|++++..+.............+.....+.|.|..++.+|.|.|+|.|.|..|..
T Consensus       242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            78899999999999874    34899999998775432221111111222235679999999999999999999999865

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=4.8e-28  Score=207.51  Aligned_cols=249  Identities=14%  Similarity=0.162  Sum_probs=168.3

Q ss_pred             CCCCCcchhccccCCCCCCCCC--CCCceEEEEEeeecceEEEEEEEeeeccchh--H-H-HHHHHHHhhhhcccCCCCe
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPS--TQKPIRFFIHEVTGEKVTSVILLFKMSVAGP--S-I-IVALSFLISLASSQRTPTI   75 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~p~~   75 (384)
                      |.+.+.|++|+.++....--..  .....+|.|.+++.+|+|.|.|.+.+..+..  . . ...+..+........+|.+
T Consensus        30 p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~  109 (312)
T 2y23_A           30 PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV  109 (312)
T ss_dssp             TTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBC
T ss_pred             CCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCcc
Confidence            6789999999876653221111  2244799999999999999999988642211  1 1 1011111111111224444


Q ss_pred             eeeCc-ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         76 SYISQ-EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        76 ~~~~~-~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      ...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..              +....++.+..+...+...|.|.+++.
T Consensus       110 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~--------------i~~~~~~~~~~~~~~~~~~L~i~~~~~  175 (312)
T 2y23_A          110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--------------IFEGPKYKMHIDRNTGIIEMFMEKLQD  175 (312)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEE--------------ECSSSSCEEEEETTTTEEEEEESCCCG
T ss_pred             ccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEE--------------CeeCCcEEEEEccCCCEEEEEEccCCc
Confidence            44443 67799999999999998 778889999997754              223356666654446667899999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEe---------------------cCCccccCCCceEEeecCceEEEEEEecccCC
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVR---------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA  212 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  212 (384)
                      +|+|.|+|.+.+.   .......+.+.                     .+|.+..  +....+.+|+.+.|.|.+.+.|.
T Consensus       176 ~d~G~Y~C~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~v~~G~~~~l~C~~~~~p~  250 (312)
T 2y23_A          176 EDEGTYTFQLQDG---KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE--YLSWEVTGECNVLLKCKVANIKK  250 (312)
T ss_dssp             GGCEEEEEEEESS---SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE--EEEEEEETTTEEEEEEEEESCCS
T ss_pred             ccCEeEEEEEEeC---CceEEEEEEEcchhhhhhcccccccccchhhccCCceee--cceEEEeCCCEEEEEEEEcCCCC
Confidence            9999999999632   23333334331                     1121111  11357889999999999999888


Q ss_pred             C-eEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        213 P-TISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       213 ~-~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      + .+.|++++..+........  ....|.|.+++.+|+|.|+|.|.|..|.. ...+.|.+
T Consensus       251 ~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~i  310 (312)
T 2y23_A          251 ETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVD  310 (312)
T ss_dssp             SCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCE-EEEEEECS
T ss_pred             CCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCce-eeeeEEEe
Confidence            8 9999999987764333222  22589999999999999999999999876 55566554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=1.4e-28  Score=212.92  Aligned_cols=253  Identities=17%  Similarity=0.206  Sum_probs=132.2

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhc-------------
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLAS-------------   68 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~-------------   68 (384)
                      |.+.+.|++|+..+..  ..+....+.+|.|.+++.+|+|.|.|.+.+. ......+.+........             
T Consensus        37 p~~~v~W~k~g~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  113 (334)
T 1ry7_B           37 PMGPTVWVKDGTGLVP--SERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDT  113 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcceEEEECCeeCCC--cccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccc
Confidence            4578999999866542  2333445789999999999999999998876 22111111111100000             


Q ss_pred             --ccCCCCeeee----CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652         69 --SQRTPTISYI----SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS  142 (384)
Q Consensus        69 --~~~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
                        ...+|.+..+    .....+.+|+.+.|.|.+.+.+.+.+.|++++......              .++.. ......
T Consensus       114 ~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--------------~~~~~-~~~~~~  178 (334)
T 1ry7_B          114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--------------HRIGG-IKLRHQ  178 (334)
T ss_dssp             -----CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTT--------------SSTTC-CCCCTT
T ss_pred             cccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccc--------------ccccc-eecccc
Confidence              0023444432    22356889999999999988888899999987653211              11000 001223


Q ss_pred             eEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecccCCCeEEEE
Q psy16652        143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWR  218 (384)
Q Consensus       143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~  218 (384)
                      ...|.|.+++.+|+|.|+|.+.+.. +.....+.|.|...    |.+....+....+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus       179 ~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~  257 (334)
T 1ry7_B          179 QWSLVMESVVPSDRGNYTCVVENKF-GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL  257 (334)
T ss_dssp             TTEEEECSCCGGGCCCEEEEEEETT-EEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred             eEEEEECCCCcccCEEEEEEEEeCC-CCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence            4579999999999999999998655 44566777877653    233223345677899999999999999999999999


Q ss_pred             e----CCCcccccCce---eEe----------ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        219 R----DNSAALSTGGS---IYR----------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       219 ~----~~~~~~~~~~~---~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      +    ++..+......   ...          ...|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|...|
T Consensus       258 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  329 (334)
T 1ry7_B          258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVVLPAE  329 (334)
T ss_dssp             ECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCE-EEEEEEEEECSC
T ss_pred             ECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeE-EEEEEEEEEECC
Confidence            9    55544332221   001          1379999999999999999999999986 667788887654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=5.3e-28  Score=205.10  Aligned_cols=245  Identities=22%  Similarity=0.313  Sum_probs=174.6

Q ss_pred             CCCCcchh-ccccCCCCCCCCC-----CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee
Q psy16652          3 APSPFDFV-NRFQNTSTPWDPS-----TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS   76 (384)
Q Consensus         3 ~~~~~w~~-~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   76 (384)
                      .+.+.|++ |+..+.... .+.     +....+|.|.+++.+|+|.|.|.+..........      ........+|.+.
T Consensus        32 ~~~i~W~~~~g~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~------~~~l~v~~~~~~~  104 (291)
T 1qz1_A           32 DKDISWFSPNGEKLSPNQ-QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA------TVNVKIFQKLMFK  104 (291)
T ss_dssp             CCEEEEECTTSCBCCSSC-SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE------EEEEEEECCSEEE
T ss_pred             CcEeEEECCCCeECccCC-ceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEE------EEEEEeecccccc
Confidence            57899998 554433211 111     2356799999999999999999988754221100      0000123456777


Q ss_pred             eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      ..+....+.+|+.+.|.|.+.+.+.+.+.|++++.....            ....++....     ...|.|.+++.+|+
T Consensus       105 ~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~-----~~~L~i~~~~~~d~  167 (291)
T 1qz1_A          105 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL------------KKDVRFIVLS-----NNYLQIRGIKKTDE  167 (291)
T ss_dssp             ECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSST------------TCCTTEEECT-----TSCEEETTCCGGGC
T ss_pred             CCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEccc------------CCCceEEEcc-----CCcEEEccCccccC
Confidence            777788899999999999999888889999998765311            0112332222     12599999999999


Q ss_pred             eeEEEEEEEccCc-ceeeeEEEEEecCCccccCC-CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC----ce
Q psy16652        157 GIYKCEVIISLNN-KVSAEVELIVRRPPIISDNS-TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG----GS  230 (384)
Q Consensus       157 G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~  230 (384)
                      |.|+|.+.+...+ .....+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+....    ..
T Consensus       168 G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~  247 (291)
T 1qz1_A          168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKH  247 (291)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSE
T ss_pred             eEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcce
Confidence            9999999876544 34566777777776655332 234567899999999999999999999999988765543    12


Q ss_pred             eE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        231 IY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       231 ~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      ..  .+..|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       248 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  290 (291)
T 1qz1_A          248 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFA  290 (291)
T ss_dssp             EECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EEcCCCcEEEEEecChhcCEEEEEEEEeCCCce-EEEEEEEEEc
Confidence            11  24589999999999999999999998875 6777777753

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=4.5e-26  Score=207.84  Aligned_cols=281  Identities=15%  Similarity=0.184  Sum_probs=176.1

Q ss_pred             CcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +..+.+.+|++|+|.|.+.+.+.    ..+.||+.........+........    ....+|+.+..+.....++|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            55677899999999999976432    6799999753322122221111111    113478888776556678999999


Q ss_pred             cCCCCCeeEEEEEEEccC----------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC
Q psy16652        151 IQETDAGIYKCEVIISLN----------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP  213 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~  213 (384)
                      ++.+|+|.|+|.+.+..+          .  .....+.|.|..    +|.+....+.......|+.+.|.|.+.+. |.+
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p  166 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS  166 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence            999999999999975431          0  123445677763    23322111111101246899999999875 655


Q ss_pred             -eEEEEeCCCccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE----------EEEEEEe--
Q psy16652        214 -TISWRRDNSAALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN----------IAVEVEF--  272 (384)
Q Consensus       214 -~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~----------~~l~v~~--  272 (384)
                       .+.|++++......        .+.....+.|.|.....+ +|.|+|.|.|..+......          ..+.+..  
T Consensus       167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp  245 (512)
T 1zvo_C          167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP  245 (512)
T ss_pred             eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence             89999965432100        111122346888888777 8999999999876542211          1233322  


Q ss_pred             --------------------------------------------------cCeEEecC-CCcccccCCcEEEEEEEeccC
Q psy16652        273 --------------------------------------------------APVITINR-PRQGQALQYDAILECHVEAYP  301 (384)
Q Consensus       273 --------------------------------------------------~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p  301 (384)
                                                                        +|.+.+.+ ....+..|+.++|.|.+.|.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~  325 (512)
T 1zvo_C          246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD  325 (512)
T ss_pred             chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence                                                              23433332 333456799999999998864


Q ss_pred             CC--eEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        302 PP--AIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       302 ~~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ++  .|.|+++|..+....... ......+.....+.|.|.....+|.|.|+|.|.|..+..
T Consensus       326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            43  899999998865211100 111111122234679999999999999999999998765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=5.8e-28  Score=207.27  Aligned_cols=243  Identities=17%  Similarity=0.219  Sum_probs=165.6

Q ss_pred             CCCCcchhccccCCC--CCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          3 APSPFDFVNRFQNTS--TPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         3 ~~~~~w~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      .+.|.|++|+.+...  ....+....+.+|.|.+++.+|+|.|.|.+.+........      +.......+|.+...+.
T Consensus        35 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~------~~v~v~~~~p~~~~~~~  108 (315)
T 1itb_B           35 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK------ISAKFVENEPNLCYNAQ  108 (315)
T ss_dssp             SSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE------CCCEEECCCTTSSSCGG
T ss_pred             CceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE------EEEEEeCCCCCcccccc
Confidence            578999999754322  2233444456699999999999999999998753221110      01111223444433222


Q ss_pred             ---ceeeeccCcEEEEEEe------ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         81 ---EQIKDIAQTADLKCSV------QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        81 ---~~~v~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                         ...+.+|+++.|.|.+      .+.|.+.+.|++++.....             ...++...      ...|.|.++
T Consensus       109 ~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~-------------~~~~~~~~------~~~L~i~~v  169 (315)
T 1itb_B          109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-------------DNIHFSGV------KDRLIVMNV  169 (315)
T ss_dssp             GEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC-------------CSSSEEEE------TTEEEESSC
T ss_pred             cccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC-------------ccceEeec------CceEEEEec
Confidence               2458899999999998      6778889999997754211             11122221      127999999


Q ss_pred             CCCCCeeEEEEEEE-ccCcce--eeeEEEEEe-----cCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCc
Q psy16652        152 QETDAGIYKCEVII-SLNNKV--SAEVELIVR-----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA  223 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~-~~~~~~--~~~~~l~v~-----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~  223 (384)
                      +.+|+|.|+|.+.+ ..+...  ...+.+.+.     .+|.+.........+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus       170 ~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~  249 (315)
T 1itb_B          170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV  249 (315)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEE
T ss_pred             eehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEE
Confidence            99999999999984 444332  344445443     4455543333345789999999999999999999999999887


Q ss_pred             ccccCcee----------------EeccEEEEcCCCCCC-CeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        224 ALSTGGSI----------------YRGNILKIPNITKTD-RGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       224 ~~~~~~~~----------------~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      +.......                .....|.|.+++.+| +|.|+|.|.|..|.. ...+.|.|.
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~  313 (315)
T 1itb_B          250 IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYP  313 (315)
T ss_dssp             CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE-EEEEEEECC
T ss_pred             CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce-eEEEEEEec
Confidence            66543211                123489999999999 999999999999986 566666654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=3.8e-27  Score=201.94  Aligned_cols=229  Identities=15%  Similarity=0.129  Sum_probs=162.6

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEee-cCCCcc
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQ-YADDYP  103 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~  103 (384)
                      .++.+|.|.+++.+|+|.|.|.+.....+.....      ........|.+........+..|+.+.+.|... +.|.+.
T Consensus        76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~------~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~  149 (313)
T 4fqp_A           76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVD------IWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ  149 (313)
T ss_dssp             CCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEE------EEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCE
T ss_pred             ccceEEEECcCChhhCEEEEEEEeeccCcceeee------eeeeeccCCcceecccceEeecCceEEEEEEccCccCCcE
Confidence            4567899999999999999998753211111000      001123456666666677788899999999875 568889


Q ss_pred             EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecC
Q psy16652        104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRP  182 (384)
Q Consensus       104 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~  182 (384)
                      +.|++++.......      ......++.+..       ...|.|.+.+.+|+|.|+|.+.+..+. .....+.|.|..+
T Consensus       150 i~W~~~~~~~~~~~------~~~~~~~~~~~~-------~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~  216 (313)
T 4fqp_A          150 ITWHSDLGGMPNTS------QVPGFLSGTVTV-------TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP  216 (313)
T ss_dssp             EEEEETTCCEEEEE------EEECSSTTCEEE-------EEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE
T ss_pred             EEeecCCccccccc------eeeeeccccccc-------ceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC
Confidence            99999876521100      000011222222       236899999999999999999875443 3455566777767


Q ss_pred             CccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      |.+.........+.+|+.+.|.|.+.|.|.| .+.|++++..+..  .....+..|.|.+++.+|+|.|+|.|.|..|..
T Consensus       217 P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP--FAVAQGAQLLIRPVDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             EEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCT--TEEEETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred             CccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCC--ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence            7654444444567789999999999999988 6999999987643  244567799999999999999999999999875


Q ss_pred             eeeEEEEEEEecCe
Q psy16652        262 MKRNIAVEVEFAPV  275 (384)
Q Consensus       262 ~~~~~~l~v~~~p~  275 (384)
                       +..+.|.|.++|-
T Consensus       295 -~~~~~l~V~~~PP  307 (313)
T 4fqp_A          295 -QAELTVQVKEGPP  307 (313)
T ss_dssp             -EEEEEEEEECCC-
T ss_pred             -EEEEEEEEEeCCC
Confidence             7788888887653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.95  E-value=7.1e-27  Score=185.48  Aligned_cols=175  Identities=27%  Similarity=0.459  Sum_probs=146.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+...... .  ..+..|.|.+++.+|+|.|+|.+.+..+......+
T Consensus        14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   93 (192)
T 2iep_A           14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG   93 (192)
T ss_dssp             CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEE
T ss_pred             ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEE
Confidence            45677899999999999998888999999998776543222 1  13457999999999999999999998877657778


Q ss_pred             EEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        267 AVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       267 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      .+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++...        ....|.|.+++.+|+
T Consensus        94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~  165 (192)
T 2iep_A           94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL--------ESGSLRIHNVQKEDA  165 (192)
T ss_dssp             EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC--------TTSCEEESSCCGGGC
T ss_pred             EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe--------cCCcEEEecCChhhC
Confidence            899999999888777778889999999999999999999999999999877665443        355799999999999


Q ss_pred             eEEEEEEEeCCcceE-EEEEEEEeeee
Q psy16652        347 GQYACKAANKYGSAQ-KEIELFDRETQ  372 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~-~~~~l~v~~~~  372 (384)
                      |.|+|.|.|..|... ..+.|.|..+|
T Consensus       166 G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          166 GQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            999999999999884 46888887654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=202.14  Aligned_cols=247  Identities=22%  Similarity=0.282  Sum_probs=169.7

Q ss_pred             CCCcchh-ccccCCCCC-CC-CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          4 PSPFDFV-NRFQNTSTP-WD-PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         4 ~~~~w~~-~~~~~~~~~-~~-~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      +.+.|++ |+..+.... .. .......+|.|.+++.+|+|.|.|.+....+.....      ........+|.+...+.
T Consensus        33 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~------~~~l~v~~~~~~~~~~~  106 (291)
T 2wim_A           33 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA------TVVLEIYQKLTFREVVS  106 (291)
T ss_dssp             SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEE------EEEEEEECCCBCCSCCC
T ss_pred             CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEE------EEEEEecCCcceEeCCC
Confidence            3789998 443322111 00 001234689999999999999999998753321100      00011234556666667


Q ss_pred             ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++++.....            ....++.+..+     ..|.|.+++.+|+|.|+
T Consensus       107 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~  169 (291)
T 2wim_A          107 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------------ISDNRFAMLAN-----NNLQILNINKSDEGIYR  169 (291)
T ss_dssp             SEEEETTSCEEECCCCBCSSCCEEEEECC----CB------------CCCSSEEECTT-----SCEEETTCCGGGCEEEE
T ss_pred             ChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc------------cCCceEEEccC-----CCEEEEecchhhCEEEE
Confidence            77899999999999999888889999998764210            12234433321     25999999999999999


Q ss_pred             EEEEEccCcc-eeeeEEEEEecCCccccCCCc-eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccE
Q psy16652        161 CEVIISLNNK-VSAEVELIVRRPPIISDNSTR-SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNI  236 (384)
Q Consensus       161 C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~  236 (384)
                      |.+.+..++. ....+.+.+..+|.+...... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+........  .+..
T Consensus       170 C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~  249 (291)
T 2wim_A          170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE  249 (291)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCE
T ss_pred             EEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccE
Confidence            9998766443 445677788777766533222 34578899999999999999999999999987765544332  2468


Q ss_pred             EEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       237 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      |.|.++..+|+|.|+|.|.|..|.. ...+.|.|..++
T Consensus       250 L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~~  286 (291)
T 2wim_A          250 LTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFVQH  286 (291)
T ss_dssp             EEEESCCSTTCEEEEEEEEETTEEE-EEEEEEEC----
T ss_pred             EEEeeCCcccCEEEEEEEEECCCce-eeeEEEEEEEec
Confidence            9999999999999999999999876 667777766544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.95  E-value=4.4e-26  Score=183.86  Aligned_cols=178  Identities=27%  Similarity=0.522  Sum_probs=143.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-eeEe---c--cEEEEcCCCC-CCCeEEEEEEEeCCCCce
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYR---G--NILKIPNITK-TDRGTYYCVAQNGVGRGM  262 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~---~--~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~  262 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....   +  ..|.|.+++. +|+|.|+|.+.|..+...
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~   92 (212)
T 2yd1_A           13 PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV   92 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEE
T ss_pred             CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeE
Confidence            4557789999999999999989999999999887753222 2111   1  4899999999 999999999999888745


Q ss_pred             eeEEEEEEEec-------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccc
Q psy16652        263 KRNIAVEVEFA-------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDT  334 (384)
Q Consensus       263 ~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~  334 (384)
                      +..+.|.|...       |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ++..         ..+
T Consensus        93 ~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~---------~~~  163 (212)
T 2yd1_A           93 SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---------KDG  163 (212)
T ss_dssp             EEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE---------ETT
T ss_pred             EeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc---------cCC
Confidence            77888888876       677777767778889999999999999999999999999987543 3322         245


Q ss_pred             eEEEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeeecCCc
Q psy16652        335 SLRVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQTGDE  376 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~  376 (384)
                      .|.|.+++.+|.|.|+|.|.|..|..... +.|.|+.....+.
T Consensus       164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~~  206 (212)
T 2yd1_A          164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK  206 (212)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C--
T ss_pred             eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccccc
Confidence            89999999999999999999999999765 8999988865543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.95  E-value=2.5e-27  Score=204.38  Aligned_cols=240  Identities=16%  Similarity=0.107  Sum_probs=168.3

Q ss_pred             CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEE-EEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVT-SVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      |.+.+.|++|+.+....  ++. ..+.+|.|.+++.+|+| .|.|.+.+..+.......      ......+|.+...+.
T Consensus        66 p~~~v~W~k~~~~~~~~--~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~------~~v~~~~p~~~~~~~  136 (329)
T 3oq3_B           66 KDNVVNWEKIGKTRRPL--NRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIV------RSHIRKPPSCIPETY  136 (329)
T ss_dssp             TTCEEEEEECSSSCEEC--STT-EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEE------EEEECCCCSCEEEEE
T ss_pred             CCCeeEEEECCCCcccc--Cce-eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEE------EEEEcCCCcEecccc
Confidence            44679999998665431  111 45789999999999999 899999875421111000      012233455554444


Q ss_pred             ceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ...+.+|+.+.|.|.+.+.| .+.+.|++++....             ....++...      ...|.|.+++.+|+|.|
T Consensus       137 ~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~-------------~~~~~~~~~------~~~L~I~~v~~~D~G~Y  197 (329)
T 3oq3_B          137 ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI-------------IDGTKYSQS------GQNLIIHNPELEDSGRY  197 (329)
T ss_dssp             ETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECC-------------CSSSSEEEE------TTEEEECSCCGGGCEEE
T ss_pred             ceEEeCCCcEEEEeccCCCCCCceEEEEECCccCC-------------CCCceEecC------CCEEEEeecChhhCEEE
Confidence            45578899999999999988 88999999775421             112333332      13799999999999999


Q ss_pred             EEEEEEc--cCc---ceeeeEEEEEecCCcc--ccCCCceEEeecCceEEEEEEecccC---CC-eEEEEeCCCcccccC
Q psy16652        160 KCEVIIS--LNN---KVSAEVELIVRRPPII--SDNSTRSVIVSEGQTVYLYCYANGFP---AP-TISWRRDNSAALSTG  228 (384)
Q Consensus       160 ~C~~~~~--~~~---~~~~~~~l~v~~~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~---~~-~v~W~~~~~~~~~~~  228 (384)
                      +|.+.|.  .++   ..+..+.|.|..++..  ....+....+.+|+.+.|.|.+.+.|   .+ .+.|++++..+....
T Consensus       198 ~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~  277 (329)
T 3oq3_B          198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLD  277 (329)
T ss_dssp             EEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBC
T ss_pred             EEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccC
Confidence            9999975  333   2334477888766521  11135567889999999999999887   67 899999988743322


Q ss_pred             ce-eE--------eccEEEEcCCCCCCCe-EEEEEEEeCCCCceeeEEEEEE
Q psy16652        229 GS-IY--------RGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       229 ~~-~~--------~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      .. ..        ....|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|
T Consensus       278 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~-~~~~~l~v  328 (329)
T 3oq3_B          278 FGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL  328 (329)
T ss_dssp             SSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE-EEEEEEEE
T ss_pred             CceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce-EEEEEEEe
Confidence            21 11        3568999999999999 9999999998875 55555554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.95  E-value=2.6e-26  Score=182.49  Aligned_cols=174  Identities=26%  Similarity=0.419  Sum_probs=143.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC--ce--eEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG--GS--IYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~--~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+....  ..  ...  ...|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~   90 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQA-T   90 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceE-e
Confidence            455678999999999999998889999999988765543  11  112  3489999999999999999999987764 5


Q ss_pred             eEEEEEEE---ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEee
Q psy16652        264 RNIAVEVE---FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       264 ~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      ..+.|.|.   .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....++.+....     ....|.|.+
T Consensus        91 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~  165 (194)
T 2a38_A           91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG-----DLYSLLIAE  165 (194)
T ss_dssp             EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEET-----TEEEEEEEE
T ss_pred             EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcC-----CEEEEEECC
Confidence            56777777   5777777777778889999999999999999999999999999877766554311     234799999


Q ss_pred             cCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        341 IERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      ++.+|.|.|+|.|.|..|....++.|.|+
T Consensus       166 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          166 AYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             ECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            99999999999999999999999998874

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.95  E-value=9.6e-27  Score=197.14  Aligned_cols=241  Identities=16%  Similarity=0.126  Sum_probs=166.1

Q ss_pred             CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652          5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK   84 (384)
Q Consensus         5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v   84 (384)
                      .+.|+++......   ......+.+|.|.+++.+|+|.|.|.+.+........      ..+.....+..+...+....+
T Consensus        31 ~v~W~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~------~~l~V~~~~~~~~~~~~~~~v  101 (289)
T 3ejj_X           31 SVEWDGPISPYWT---LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT------IHLYVKDPAHSWNLLAQEVTV  101 (289)
T ss_dssp             CCEEECSCSSSSE---ECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEE------EEEEECCSSCSEEESCSEEEE
T ss_pred             cEEEccCCCceEE---EeccCCccEEEEeeeccccCEEEEEEEeccCCcceeE------EEEEEeCCCcceecccceEEE
Confidence            5889977533321   1234567899999999999999999987643221100      001111122225556677779


Q ss_pred             eccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         85 DIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      .+|+++.|.|.+.+.+... +.|++.+...             .....++.+..+     ..|.|.+++.+|+|.|+|.+
T Consensus       102 ~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~-------------~~~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a  163 (289)
T 3ejj_X          102 VEGQEAVLPCLITDPALKDSVSLMREGGRQ-------------VLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKT  163 (289)
T ss_dssp             ETTSCEEECEEESCGGGGGSEEEEEGGGEE-------------CCTTCCEEEETT-----TEEEESSCCGGGCEEEEEEE
T ss_pred             ecCCceEeEEEccCCCcceEEEEEecCCee-------------cCCCccEEECCC-----CCEEEeecccccCEEEEEEE
Confidence            9999999999998765544 9999855431             112234433321     25999999999999999999


Q ss_pred             EEccCcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccC------ceeE
Q psy16652        164 IISLNNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTG------GSIY  232 (384)
Q Consensus       164 ~~~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~------~~~~  232 (384)
                      .++..+..+..+.|.|.    .+|.+... +....+.+|+.+.|.|.+.+ .|.+.+.|++++..+....      ....
T Consensus       164 ~~~~~~~~~~~~~l~V~~~~~~~p~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  242 (289)
T 3ejj_X          164 MVNGRESTSTGIWLKVNRVHPEPPQIKLE-PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYK  242 (289)
T ss_dssp             EETTEEEECCCEEEEEESSCCCCCEEEEE-SSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEE
T ss_pred             EeCCCccccccEEEEEEECCCCCCeEEec-CCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEE
Confidence            86665667778888887    34544432 34456679999999999987 7888999999987665432      2223


Q ss_pred             eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      ....|.|.+++.+|+|.|+|.|.|..|.. +.++.|.+..++
T Consensus       243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~s~~L~~~~~~  283 (289)
T 3ejj_X          243 KVRALSLNAVDFQDAGIYSCVASNDVGTR-TATMNFQVVESH  283 (289)
T ss_dssp             EEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEEECC---
T ss_pred             eeEEEEEEeecccCCEEEEEEEEcCCCCc-cccEEEEEEecc
Confidence            45689999999999999999999999876 667777665544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.95  E-value=5.8e-26  Score=179.84  Aligned_cols=170  Identities=25%  Similarity=0.373  Sum_probs=140.2

Q ss_pred             eEEeec-CceEEEEEEecccCC--CeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        192 SVIVSE-GQTVYLYCYANGFPA--PTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       192 ~~~~~~-g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      ...+.+ |+.+.|.|.+.+.+.  +.+.|++++..+..... ...+..|.|.+++.+|+|.|+|.+.|. +. .+..+.|
T Consensus        11 ~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~-~~~~~~l   87 (190)
T 2wv3_A           11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-NASNMEYRINKPRAEDSGEYHCVYHFV-SA-PKANATI   87 (190)
T ss_dssp             CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB-CCSEEEEEESSCCGGGCEEEEEEEEET-TE-EEEEEEE
T ss_pred             eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce-EeccEEEEEecCCcccCEEEEEEEEeC-Cc-ccccEEE
Confidence            345566 999999999988776  78999999877654432 225678999999999999999999998 54 4788899


Q ss_pred             EEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE--CCEEec---CCCceeeeeeeccCccccceEEEeecC-
Q psy16652        269 EVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK--DGVQIM---NNQHYSVSHFATSDEFSDTSLRVITIE-  342 (384)
Q Consensus       269 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~-  342 (384)
                      .|..+|.+...+....+..|+.+.|.|.+.|+|.|.+.|++  +|..+.   ...++.+..     ......|.|.+++ 
T Consensus        88 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~  162 (190)
T 2wv3_A           88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-----KENYTELNIVNLQI  162 (190)
T ss_dssp             EEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE-----CSSEEEEEECSCCT
T ss_pred             EEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec-----CCCeeEEEEEeccc
Confidence            99999998887777788999999999999999999999999  787764   334444332     1123579999999 


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        343 RRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      .+|.|.|+|.|.|..|....++.|.|+
T Consensus       163 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          163 TEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             TTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            799999999999999999999999886

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.95  E-value=5.5e-27  Score=198.70  Aligned_cols=234  Identities=14%  Similarity=0.156  Sum_probs=163.2

Q ss_pred             CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652          5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK   84 (384)
Q Consensus         5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v   84 (384)
                      .+.|++|+.++...     ...+.+|.|.+++.+|+|.|.|.+.+......         .+. ...+|.+...+....+
T Consensus        39 ~i~W~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~---------~l~-V~~~~~~~~~~~~~~~  103 (290)
T 2o26_X           39 FVRWTFKTYFNEMV-----ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI---------YVF-VRDPAKLFLVGLPLFG  103 (290)
T ss_dssp             EEEEEEECSSSCEE-----EECSSEEEETTCCGGGCEEEEEEESSSCEEEE---------EEE-EECSSCCBCCCCCEEE
T ss_pred             cEEEecCCcceeee-----cCCCceEEEeccCHHhCeEEEEEeeCCccEEE---------EEE-EeCCCcccccccceEE
Confidence            57899998766211     12348999999999999999999876210000         001 1123343455667778


Q ss_pred             eccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe-eEEEE
Q psy16652         85 DIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG-IYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~  162 (384)
                      .+|+.+.|.|.+.+ |. +.+.|++.+....             ..+.++.....     ..|.|.+++.+|+| .|+|.
T Consensus       104 ~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l-------------~~~~~~~~~~~-----~~L~i~~v~~~d~G~~Y~C~  164 (290)
T 2o26_X          104 KEDSDALVRCPLTD-PQVSQYSLIECDGKSL-------------PTDLTFVPNPK-----AGITIKNVKRAYHRLCVRCA  164 (290)
T ss_dssp             ETTSCEEECCCBSC-CSCEEEEEEETTSCCC-------------CTTCEEEEETT-----TEEEEESCCGGGTTCEEEEE
T ss_pred             ecCCeEEEeCcCCC-CCCceEEEEeCCCcCC-------------CCCCceeeCCC-----CCEEEecccHHHCCCEEEEE
Confidence            99999999999985 66 8999976443311             11233333321     26999999999999 99999


Q ss_pred             EEEccCcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCCcc----cccCc----
Q psy16652        163 VIISLNNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA----LSTGG----  229 (384)
Q Consensus       163 ~~~~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~----~~~~~----  229 (384)
                      +.+..+...+..+.|.|.    .+|.+... +....+.+|+.+.|.|.+.+.|.+. +.|++++..+    .....    
T Consensus       165 a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~-~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~  243 (290)
T 2o26_X          165 AQRDGTWLHSDKFTLKVREAIKAIPVVSVP-ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR  243 (290)
T ss_dssp             EEETTEEEECCCEEEEEECCCCSCCEEECS-CSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEE
T ss_pred             EEECCceEEeEEEEEEEEeCCCCCCccccC-CCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccccc
Confidence            997643334556778776    55555433 3444788999999999999988885 9999998773    22111    


Q ss_pred             ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                         .......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       244 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P  290 (290)
T 2o26_X          244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKVVEKG  290 (290)
T ss_dssp             ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred             CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEEEEEeCC
Confidence               22345689999999999999999999998876 677778776654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.95  E-value=2.8e-26  Score=182.82  Aligned_cols=175  Identities=28%  Similarity=0.375  Sum_probs=143.0

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-E---ec--cEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-Y---RG--NILKIPNITKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~---~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... .   .+  ..|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~   89 (197)
T 2j8h_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-S   89 (197)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEE-E
T ss_pred             CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCce-e
Confidence            456778999999999999998899999999987766443221 1   12  289999999999999999999987764 7


Q ss_pred             eEEEEEEEecCeEEecC-----CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEE
Q psy16652        264 RNIAVEVEFAPVITINR-----PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV  338 (384)
Q Consensus       264 ~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  338 (384)
                      ..+.|.|..+|.+..+.     ....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+...     .....|.|
T Consensus        90 ~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i  164 (197)
T 2j8h_A           90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-----RSFTSLVF  164 (197)
T ss_dssp             EEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC-----SSEEEEEC
T ss_pred             EEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc-----CCceEEEE
Confidence            78888888888765433     224567799999999999999999999999999987776655421     13568999


Q ss_pred             ee-cCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        339 IT-IERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       339 ~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .+ ++.+|.|.|+|.|.|..|..+.++.|.|.+
T Consensus       165 ~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             TTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            99 999999999999999999999999998863

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.94  E-value=1.9e-28  Score=209.65  Aligned_cols=231  Identities=13%  Similarity=0.082  Sum_probs=157.8

Q ss_pred             CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEe-ecCCCc
Q psy16652         24 TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSV-QYADDY  102 (384)
Q Consensus        24 ~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~  102 (384)
                      ..++.+|.|.+++.+|+|.|.|.+.....+......   .+. ......+.+...+.......|+.+.|.|.. .+.|.+
T Consensus        70 ~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~---~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~  145 (308)
T 4fom_A           70 SLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSST---TVT-VLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVA  145 (308)
T ss_dssp             SSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEE---EEE-EEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCC
T ss_pred             CCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeee---EEE-eeeccccccccccceeEEcCCceEEEEEEecCCcCCc
Confidence            346688999999999999999998653111110000   000 001111223333455556788999999986 467888


Q ss_pred             cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEec
Q psy16652        103 PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR  181 (384)
Q Consensus       103 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~  181 (384)
                      .+.|++++........        .......       .....|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.|..
T Consensus       146 ~i~W~~~~~~~~~~~~--------~~~~~~~-------~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~  210 (308)
T 4fom_A          146 HIDWEGDLGEMESTTT--------SFPNETA-------TIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY  210 (308)
T ss_dssp             EEEECCCSSBCCEEEE--------ECTTSCE-------EEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE
T ss_pred             eEEEEECCcccccccc--------eeeeecc-------cccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec
Confidence            9999998865321110        0011111       11236999999999999999999875543 345566677777


Q ss_pred             CCccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +|.+.........+..|+.+.|.|.+.|.|.| .+.|++++..+... .....+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus       211 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~  289 (308)
T 4fom_A          211 APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQ  289 (308)
T ss_dssp             EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-CBCSTTEEECCSCCCSCCCSEEEEEEEETTEE
T ss_pred             CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-EEEcCCeEEEECCCChhhCEEEEEEEEeCCCc
Confidence            77665444455567789999999999999888 69999998766433 22223445667899999999999999999987


Q ss_pred             ceeeEEEEEEEecCe
Q psy16652        261 GMKRNIAVEVEFAPV  275 (384)
Q Consensus       261 ~~~~~~~l~v~~~p~  275 (384)
                      . +..+.|.|.++|.
T Consensus       290 ~-~~~~~l~V~~~P~  303 (308)
T 4fom_A          290 R-SDQKVIYISDPPH  303 (308)
T ss_dssp             E-EEEEECCEECCC-
T ss_pred             E-EEEEEEEEEcCCC
Confidence            5 7788899988885

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=177.45  Aligned_cols=174  Identities=28%  Similarity=0.456  Sum_probs=138.4

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRN  265 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~  265 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....   ....+..|.|.+++.+|+|.|+|.+.+..+.. ....
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   88 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD   88 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence            4456789999999999998888899999999876653221   12235679999999999999999999976443 3456


Q ss_pred             EEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC
Q psy16652        266 IAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       266 ~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+.+..+|.+...+.  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+....++....       ....|.|.+++.
T Consensus        89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-------~~~~L~i~~~~~  161 (189)
T 2v5t_A           89 IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNIIN  161 (189)
T ss_dssp             EEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET-------TTTEEEECSCCG
T ss_pred             EEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec-------CCCEEEEcCCCh
Confidence            7788888887766544  3467789999999999999999999999999998776655432       357899999999


Q ss_pred             CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        344 RQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +|+|.|+|.|.|..|....++.|.|..
T Consensus       162 ~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          162 SDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            999999999999999999999888763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.94  E-value=2.4e-25  Score=179.46  Aligned_cols=177  Identities=24%  Similarity=0.393  Sum_probs=137.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE-----eccEEEEcCC-CCCCCeEEEEEEEeCCCCcee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIPNI-TKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+........     .+..|.|.++ ..+|+|.|+|.+.|..+.. .
T Consensus        13 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~-~   91 (212)
T 2yd6_A           13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEI-S   91 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEE-E
T ss_pred             cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcE-E
Confidence            4556789999999999999989999999999887755433222     2347999999 5999999999999987764 6


Q ss_pred             eEEEEEEEec-------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC---ceeeeeeeccCcccc
Q psy16652        264 RNIAVEVEFA-------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ---HYSVSHFATSDEFSD  333 (384)
Q Consensus       264 ~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~  333 (384)
                      ..+.|.|...       |.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....   ++....  .   ...
T Consensus        92 ~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~--~---~~~  166 (212)
T 2yd6_A           92 VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR--S---ESI  166 (212)
T ss_dssp             EEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE--E---TTE
T ss_pred             EEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe--c---CCe
Confidence            6778888764       666666666778889999999999999999999999999886542   222211  1   135


Q ss_pred             ceEEEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeee
Q psy16652        334 TSLRVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQ  372 (384)
Q Consensus       334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~  372 (384)
                      ..|.|.+++.+|.|.|+|.|.|..|...++ ..|.|...+
T Consensus       167 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          167 GALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            789999999999999999999999987543 666666554

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.94  E-value=2.8e-25  Score=179.15  Aligned_cols=190  Identities=23%  Similarity=0.411  Sum_probs=148.0

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++....             ....++.+... ..+...|.|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~-~~~~~~L~i~   69 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-------------GTQSRYTVLEQ-PGGISILRIE   69 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECC-------------TTSTTEEEEEE-TTTEEEEEES
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECC-------------CCcceeEEEEc-CCCeEEEEEE
Confidence            467899999999999999999999999988888999999775421             12345554432 3345789999


Q ss_pred             ecCC-CCCeeEEEEEEEccCcceeeeEEEEEecC-------CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCC
Q psy16652        150 EIQE-TDAGIYKCEVIISLNNKVSAEVELIVRRP-------PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN  221 (384)
Q Consensus       150 ~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~  221 (384)
                      +++. +|+|.|+|.+.+..+...+..+.|.|..+       |.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus        70 ~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~  148 (212)
T 2yd1_A           70 PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ  148 (212)
T ss_dssp             SCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE-ECCCCEEEETTCCEEECCEEECSSCCEEEEEETT
T ss_pred             ecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE-eCCCceEeecCCeEEEEEEeccCCCCeEEEEECC
Confidence            9999 99999999998665554777888888765       3333 2234567889999999999999999999999998


Q ss_pred             Cccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        222 SAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       222 ~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      ..+... ......++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|+..+
T Consensus       149 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          149 TKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             eEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            877653 33445667999999999999999999999988765555788887654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=177.83  Aligned_cols=167  Identities=20%  Similarity=0.305  Sum_probs=140.2

Q ss_pred             CceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCc--eeEe-----------ccEEEEcCCCCCCCeEEEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGG--SIYR-----------GNILKIPNITKTDRGTYYCVAQ  255 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~--~~~~-----------~~~l~i~~~~~~d~G~Y~C~~~  255 (384)
                      +....+.+|+++.|.|.+. +.|.+.+.|++++..+.....  ....           ...|.|.+++.+|+|.|+|.+.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   88 (195)
T 2c5d_C            9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF   88 (195)
T ss_dssp             CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEE
T ss_pred             hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEE
Confidence            5667889999999999998 888899999999887655422  1111           4689999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652        256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDT  334 (384)
Q Consensus       256 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (384)
                      +..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......          ....
T Consensus        89 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----------~~~~  158 (195)
T 2c5d_C           89 LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----------GPQR  158 (195)
T ss_dssp             ETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----------SCCE
T ss_pred             eCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----------CCCC
Confidence            977665556688999999998887777888899999999999999999 99999999888655432          1467


Q ss_pred             eEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEE
Q psy16652        335 SLRVITIERRQFGQYACKAANKYGSAQ-KEIELFD  368 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v  368 (384)
                      .|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       159 ~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          159 SLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            79999887  78999999999999986 6888888

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.94  E-value=2.6e-25  Score=174.81  Aligned_cols=167  Identities=23%  Similarity=0.412  Sum_probs=139.3

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITKTDRGTYYCVAQNGVGRGM  262 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  262 (384)
                      .+....+.+|+++.|.|.+.+.|.+.+.|++++..+.........      ...|.|.+++.+|+|.|+|.+.+..+...
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   87 (182)
T 1rhf_A            8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   87 (182)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEE
Confidence            356678899999999999998888999999998776554332221      35899999999999999999999876655


Q ss_pred             eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeec
Q psy16652        263 KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       263 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      +..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+.....            ....|.|.++
T Consensus        88 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------------~~~~L~i~~~  155 (182)
T 1rhf_A           88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------------SPSVLNVTGV  155 (182)
T ss_dssp             CCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------------SSEEEEECCC
T ss_pred             EEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC------------CceEEEEecc
Confidence            67889999999999888887888999999999999999999 9999999988854321            3667888887


Q ss_pred             CCCCCeEEEEEEEeCCcceEE-EEEEEEe
Q psy16652        342 ERRQFGQYACKAANKYGSAQK-EIELFDR  369 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~  369 (384)
                        +|+|.|+|.|.|..|...+ ++.|.|+
T Consensus       156 --~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          156 --TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             --SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             --ccCeEEEEEEECCCCCcccceEEEEeC
Confidence              5899999999999998864 7777763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=178.08  Aligned_cols=175  Identities=19%  Similarity=0.345  Sum_probs=142.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe-c---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-G---NILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... .   ..|.|.+++.+|+|.|+|.+.|..+.. ...
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~   92 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV-ETS   92 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE-EEE
T ss_pred             CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce-eEE
Confidence            45667899999999999988888999999998877654443322 2   279999999999999999999887764 667


Q ss_pred             EEEEEEecCeEEec---CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC
Q psy16652        266 IAVEVEFAPVITIN---RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       266 ~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      +.+.|..+|.+...   +....+..|+.+.|.|.+.+.|.|.+.|++++..+....++.+...     .....|.|.++.
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~  167 (197)
T 3lcy_A           93 SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT-----EHYTHLVMKNVQ  167 (197)
T ss_dssp             EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEC-----SSEEEEEESSCC
T ss_pred             EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEc-----CCEEEEEEcccc
Confidence            78888887776532   2334567899999999999999999999999999987777665431     123679999998


Q ss_pred             C-CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        343 R-RQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       343 ~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      . +|.|.|+|.|.|..|....++.|.|.+
T Consensus       168 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          168 RKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             HHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             chhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            4 899999999999999999999999875

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.94  E-value=2.4e-26  Score=198.56  Aligned_cols=228  Identities=15%  Similarity=0.140  Sum_probs=158.3

Q ss_pred             CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe--eeeCcceeeecc---CcEEEEEE-ee
Q psy16652         24 TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI--SYISQEQIKDIA---QTADLKCS-VQ   97 (384)
Q Consensus        24 ~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~v~~g---~~v~l~C~-~~   97 (384)
                      ...+.+|.|.+++.+|+|.|.|.+.....+....     ...+ ....+|.+  ...+....+.+|   +.+.|.|. ..
T Consensus        88 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----~~~l-~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~  161 (331)
T 3u83_A           88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRES-----QLNL-TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN  161 (331)
T ss_dssp             SSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEE-----EEEE-EEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE
T ss_pred             CCCCceEEEcccCcccCcEEEEEEEecCCCccEE-----EEEE-EEecCCcceeecCCCceeecCCCccceEEEEEEecC
Confidence            4567889999999999999999854321111100     0000 11123443  224555667888   77999998 67


Q ss_pred             cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEE
Q psy16652         98 YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVEL  177 (384)
Q Consensus        98 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  177 (384)
                      +.|.+.+.|+++......       .......+..+.+.       ..|.|.+++.+|+|.|+|.+.+.. +..+..+.|
T Consensus       162 ~~p~~~i~W~~~~~~~~~-------~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~-~~~~~~~~l  226 (331)
T 3u83_A          162 GKPPSVVSWETRLKGEAE-------YQEIRNPNGTVTVI-------SRYRLVPSREAHQQSLACIVNYHM-DRFKESLTL  226 (331)
T ss_dssp             EBSCCEEEEEESSCCEEE-------EEEEECTTSCEEEE-------EEEEECCCGGGTTCEEEEEEEETT-EEEEEEEEC
T ss_pred             CcCCceEEEEcCCCCccc-------cceeECCCCcEEEE-------EEEEEEeccccCCCEEEEEEecCC-CcceeeEEE
Confidence            778889999996432100       00001112233222       369999999999999999998654 446677788


Q ss_pred             EEecCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeEeccEEEEc-CCCCCCCeEEEEEEE
Q psy16652        178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIP-NITKTDRGTYYCVAQ  255 (384)
Q Consensus       178 ~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~  255 (384)
                      .|..+|.+.........+.+|+.+.|.|.+.+.|.+. +.|++++..+...  ....+..|.|. ++..+|+|.|+|.|.
T Consensus       227 ~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~--~~~~~~~L~i~~~v~~~d~G~Y~C~a~  304 (331)
T 3u83_A          227 NVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEAT  304 (331)
T ss_dssp             CEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECSCCCGGGCEEEEEEEE
T ss_pred             EEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc--ceecCcEEEEeCCCccccCeEEEEEEE
Confidence            8877776554334445578899999999999999997 9999998876433  44467789999 899999999999999


Q ss_pred             eCCCCceeeEEEEEEEecCe
Q psy16652        256 NGVGRGMKRNIAVEVEFAPV  275 (384)
Q Consensus       256 ~~~~~~~~~~~~l~v~~~p~  275 (384)
                      |..|.. +..+.|.|...+.
T Consensus       305 N~~G~~-~~~~~l~V~~~~~  323 (331)
T 3u83_A          305 NPIGTR-SGQVEVNITEAAA  323 (331)
T ss_dssp             ETTEEE-EEEEEECCBC---
T ss_pred             eccccc-eEEEEEEEeccch
Confidence            998875 7778887776553

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.94  E-value=8.2e-26  Score=179.67  Aligned_cols=165  Identities=16%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             EEeecCceEEEEEE---ecccCCCeEEEEeCCCcccccC-----------------cee----EeccEEEEcCCCCCCCe
Q psy16652        193 VIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAALSTG-----------------GSI----YRGNILKIPNITKTDRG  248 (384)
Q Consensus       193 ~~~~~g~~~~l~C~---~~~~~~~~v~W~~~~~~~~~~~-----------------~~~----~~~~~l~i~~~~~~d~G  248 (384)
                      +.+..|+.+.|.|.   +.+.|.+.+.|+|++.......                 ...    .....|.|.+++.+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            46789999999996   4577889999999875432110                 000    01247999999999999


Q ss_pred             EEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC----CCceeeee
Q psy16652        249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN----NQHYSVSH  324 (384)
Q Consensus       249 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~~~~~  324 (384)
                      .|+|.+.|..+.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..    +.++....
T Consensus        83 ~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~  161 (203)
T 4fa8_A           83 NYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK  161 (203)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT
T ss_pred             EEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC
Confidence            9999999988775 677889999999888877778889999999999999999999999987755432    22222211


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                        +   ..-..+.|.+++.+|+|.|+|.|+|..|..+..
T Consensus       162 --~---g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          162 --D---GSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             --T---SCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             --C---CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence              0   012234567899999999999999999988753

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.94  E-value=1.4e-27  Score=207.93  Aligned_cols=246  Identities=13%  Similarity=0.154  Sum_probs=135.2

Q ss_pred             CCCCcchhccccCCC-C------CCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652          3 APSPFDFVNRFQNTS-T------PWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI   75 (384)
Q Consensus         3 ~~~~~w~~~~~~~~~-~------~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   75 (384)
                      .+.+.|++|+..... .      ...+....+.+|.|.+++.+|+|.|.|.+.+..........+  .+ .......+..
T Consensus        47 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l--~V-~~~~~~~~~~  123 (349)
T 4dep_C           47 GLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPL--EV-VQKDSCFNSP  123 (349)
T ss_dssp             TCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE--EE-ECCCTTSCCS
T ss_pred             CceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEE--EE-ecCCcccCcc
Confidence            378999999832110 0      111222346689999999999999999998752211110000  00 0001111111


Q ss_pred             eeeCcceeeeccCcEEEEEEe-----ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         76 SYISQEQIKDIAQTADLKCSV-----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ...+....+.+|+++.|.|..     .+.|.+.+.|++++....              ...++....      ..|.|.+
T Consensus       124 ~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~--------------~~~~~~~~~------~~L~i~~  183 (349)
T 4dep_C          124 MKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ--------------NFNNVIPEG------MNLSFLI  183 (349)
T ss_dssp             CCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC--------------SCSSEEEET------TEEEEES
T ss_pred             cccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC--------------CccceeecC------CEEEEee
Confidence            122345568899999999985     566888999999775421              011111111      3699999


Q ss_pred             cCCCCCeeEEEEEEEccCcc---eeeeEEEEEec------CCccccCCCce-EEeecCceEEEEEEec----ccCCCeEE
Q psy16652        151 IQETDAGIYKCEVIISLNNK---VSAEVELIVRR------PPIISDNSTRS-VIVSEGQTVYLYCYAN----GFPAPTIS  216 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~------~~~~~~~~~~~-~~~~~g~~~~l~C~~~----~~~~~~v~  216 (384)
                      ++.+|+|.|+|.+.+..++.   .+..+.|.|..      +|.+....... ..+.+|+.+.|.|.+.    +.|.+.+.
T Consensus       184 v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~  263 (349)
T 4dep_C          184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVW  263 (349)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEE
T ss_pred             eeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEE
Confidence            99999999999999876444   36777787765      34333221112 2678999999999997    56888999


Q ss_pred             EEeCCCcccccC-ce-------------eEeccEEEEcCCCCCCC-eEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        217 WRRDNSAALSTG-GS-------------IYRGNILKIPNITKTDR-GTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       217 W~~~~~~~~~~~-~~-------------~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      |++++..+.... ..             ......|.|.++..+|+ |.|+|.|.|..|.. ...+.|.|..
T Consensus       264 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~~  333 (349)
T 4dep_C          264 WTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQKV  333 (349)
T ss_dssp             EESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE-EEECC-----
T ss_pred             EEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE-EEEEEEeeec
Confidence            999998765411 11             11234599999999999 99999999998875 5667777765

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=1.1e-24  Score=172.74  Aligned_cols=171  Identities=20%  Similarity=0.331  Sum_probs=138.8

Q ss_pred             CceEEeecCceEEEEEEecccC-CCeEEEEe-CCCcccccCcee-E-----eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP-APTISWRR-DNSAALSTGGSI-Y-----RGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+....... .     ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   88 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence            4556789999999999998866 78999999 776655332221 1     23589999999999999999999987555


Q ss_pred             eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC--ceeeeeeeccCccccceEEEe
Q psy16652        262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ--HYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       262 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....  ++...        .+..|.|.
T Consensus        89 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~  160 (191)
T 1epf_A           89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIR  160 (191)
T ss_dssp             EEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--------TTSCEEET
T ss_pred             eEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe--------cCCeEEEC
Confidence            577888999999998888878888999999999999999999999999999886433  22221        34579999


Q ss_pred             ecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        340 TIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +++.+|+|.|+|.|.|..|.......+.|
T Consensus       161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          161 GIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            99999999999999999976666555554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=176.79  Aligned_cols=168  Identities=16%  Similarity=0.233  Sum_probs=130.0

Q ss_pred             ceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCceeEe-c-----cEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652        191 RSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSIYR-G-----NILKIPNITKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      ....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......... +     ..|.|.+++.+|+|.|+|.+.|  +.. .
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a-~   86 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKA-T   86 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTE-E
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCe-E
Confidence            3567889999999999964 788999999999988655443221 1     2699999999999999999999  333 2


Q ss_pred             eEEEEEEE---------------------ecCeEEecCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCcee
Q psy16652        264 RNIAVEVE---------------------FAPVITINRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYS  321 (384)
Q Consensus       264 ~~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~  321 (384)
                      ....+.+.                     .+|.+.... ...+.+|+.+.|.|.+.|. |.|.+.|+++|.++..+.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~  165 (207)
T 3rbs_A           87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD  165 (207)
T ss_dssp             EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC
T ss_pred             EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE
Confidence            22332211                     146554333 3567889999999999998 999999999999997665532


Q ss_pred             eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      ..       ....+|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus       166 ~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          166 FK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             CS-------SEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             cC-------CCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            21       134579999999999999999999999999999988764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.7e-25  Score=180.63  Aligned_cols=192  Identities=24%  Similarity=0.398  Sum_probs=139.0

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR  264 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  264 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+......     ......|.|.+++.+|+|.|+|.+.+..+.. ..
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EE
Confidence            45678999999999999999888999999998776543321     2234589999999999999999999987764 56


Q ss_pred             EEEEEEEe----cCeEEe-cCCCcccccCCcEEEEEEEeccCCCeEEEEE----CCEEecCCCceeeeee---eccCccc
Q psy16652        265 NIAVEVEF----APVITI-NRPRQGQALQYDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHF---ATSDEFS  332 (384)
Q Consensus       265 ~~~l~v~~----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~---~~~~~~~  332 (384)
                      .+.+.|..    +|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+...........   .......
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  180 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA  180 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEE
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCC
Confidence            67777765    233332 3455667889999999999999999999999    8877765543322211   1111224


Q ss_pred             cceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCccCCccc
Q psy16652        333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIFY  382 (384)
Q Consensus       333 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~  382 (384)
                      ...|.|.+++.+|.|.|+|.|.|..|....++.|.|.++|..+..+..++
T Consensus       181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~ve~~  230 (241)
T 3grw_A          181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEAD  230 (241)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------------
T ss_pred             ceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCccceecc
Confidence            56799999999999999999999999999999999999988776655443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=173.38  Aligned_cols=183  Identities=20%  Similarity=0.339  Sum_probs=141.3

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc-----eEE
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS-----TYI  145 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  145 (384)
                      +|.+...+....+.+|++++|.|.+. +.+.+.+.|++++......            ...++.+.......     ...
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~   69 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELA------------DSTQTQVPLGEDEQDDWIVVSQ   69 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSC------------EEEEEEEECSSSTTSEEEEEEE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccC------------CCCceEEEEccccccceeeccE
Confidence            57888889999999999999999998 8888899999977542111            00123333221111     468


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcc
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAA  224 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~  224 (384)
                      |.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus        70 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  148 (195)
T 2c5d_C           70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE-PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL  148 (195)
T ss_dssp             EEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC-CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBS
T ss_pred             EEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC-CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEec
Confidence            9999999999999999999765555566688999888866543 445778899999999999999999 99999999877


Q ss_pred             cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ...... .....|.|.+++  |+|.|+|.|.|..|...+..+.|.|
T Consensus       149 ~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          149 ATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            654332 456689999987  7899999999988876446777777

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=5e-25  Score=173.18  Aligned_cols=179  Identities=22%  Similarity=0.344  Sum_probs=135.4

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++....              ...++.+..+.......|.|.++
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~--------------~~~~~~~~~~~~~~~~~L~i~~~   67 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ--------------NLDQLYIPVSEQHWIGFLSLKSV   67 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECC--------------SSEEEEEEEETTEEEEEEEESSC
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecC--------------CCCceEEEecCCCceEEEEEeec
Confidence            4567777888889999999999999988888999999765421              11222333322333568999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCce
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGS  230 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~  230 (384)
                      +.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....  
T Consensus        68 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~--  144 (182)
T 1rhf_A           68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA--  144 (182)
T ss_dssp             CGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC-CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE--
T ss_pred             CcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec-CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC--
Confidence            9999999999998664445677888999888876643 445678999999999999999998 999999987664332  


Q ss_pred             eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                       .....|.|.++  +|+|.|+|.|.|..|...+..+.|.|
T Consensus       145 -~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          145 -PSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             -ESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -CCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence             25668999888  58999999999998876455677665

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.93  E-value=1.9e-25  Score=185.43  Aligned_cols=208  Identities=19%  Similarity=0.269  Sum_probs=122.5

Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccC-----CCeEEEEeCCC--c
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNS--A  223 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~--~  223 (384)
                      ++.+|+|.|+|.+.    +.......+.+..++.+. ..+....+.+|+++.|.|.+.+.+     .+.+.|++++.  .
T Consensus        11 v~~~dsg~Y~C~a~----g~~~~~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~   85 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS----GYSFTNYWMNWLRELVMT-QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS   85 (254)
T ss_dssp             -------------------------------CCCEE-EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred             ecCCccEEEEEcCc----hhhhhhhhhheeeceeEE-eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence            67899999999986    222223333333333333 235567899999999999998877     37899998542  1


Q ss_pred             cc----------c--cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcc
Q psy16652        224 AL----------S--TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF---APVITINRPRQG  284 (384)
Q Consensus       224 ~~----------~--~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~  284 (384)
                      +.          .  ..+...    ....|.|.+++.+|+|.|+|.+.|..+........+.|..   +|.+...++...
T Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~  165 (254)
T 2c1o_A           86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE  165 (254)
T ss_dssp             CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH
T ss_pred             ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh
Confidence            10          0  011111    1237999999999999999999987554333334555553   677776555545


Q ss_pred             cccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        285 QALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ...|+.++|.|.+.|. |+ +.+.|+++|..+.........  ....+.....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            5578899999999884 44 369999999988655111111  1111111124679999999999999999999998765


Q ss_pred             EEE
Q psy16652        361 QKE  363 (384)
Q Consensus       361 ~~~  363 (384)
                      ...
T Consensus       246 ~~~  248 (254)
T 2c1o_A          246 PIV  248 (254)
T ss_dssp             CEE
T ss_pred             cce
Confidence            333

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=176.13  Aligned_cols=164  Identities=22%  Similarity=0.312  Sum_probs=138.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     .+..|.|.+++.+|+|.|+|.+.+..+...+..+.|.
T Consensus        25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   99 (218)
T 3k0w_A           25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD   99 (218)
T ss_dssp             CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred             CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence            55677899999999999999888999999998766543     3568999999999999999999998776556667888


Q ss_pred             EEec---------------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652        270 VEFA---------------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT  334 (384)
Q Consensus       270 v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (384)
                      |...               |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....              ..
T Consensus       100 V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~--------------~~  165 (218)
T 3k0w_A          100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KK  165 (218)
T ss_dssp             EECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC--------------SS
T ss_pred             EEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC--------------CC
Confidence            8765               567777777788999999999999999999999999999886442              45


Q ss_pred             eEEEeecCCCCCeEEEEEEEeCCcc-eEEEEEEEEeeee
Q psy16652        335 SLRVITIERRQFGQYACKAANKYGS-AQKEIELFDRETQ  372 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~  372 (384)
                      .|.|.+++.+|.|.|+|.|.|..|. .+..+.|.|.+..
T Consensus       166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN  204 (218)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred             EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence            7999999999999999999999887 5567888887753

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.93  E-value=6.7e-26  Score=192.24  Aligned_cols=241  Identities=15%  Similarity=0.125  Sum_probs=159.6

Q ss_pred             CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652          5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK   84 (384)
Q Consensus         5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v   84 (384)
                      .+.|+.+.....   .........+|.|.+++.+|+|.|.|.+.+........      ..+.....+..+...+....+
T Consensus        31 ~v~W~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~------~~l~V~~~~~~~~~~~~~~~v  101 (292)
T 4dkd_C           31 SVEWDGPPSPHW---TLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA------IHLYVKDPARPWNVLAQEVVV  101 (292)
T ss_dssp             CCCBCCCCCSSC---EECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEE------ECCEECCSSCCEEESCSEEEE
T ss_pred             ceEEccCCCCce---EEeccCceEEEEEcccccccCEEEEEEEccCCCCcceE------EEEEEcCccccccccCCeEEE
Confidence            488996643322   11223456799999999999999999987743221110      001111122223455667779


Q ss_pred             eccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         85 DIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      .+|+++.|.|.+.+.. .+.+.|++++....             ....++.+..     ...|.|.+++.+|+|.|+|.+
T Consensus       102 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~-------------~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a  163 (292)
T 4dkd_C          102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPL-------------MRHTNYSFSP-----WHGFTIHRAKFIQSQDYQCSA  163 (292)
T ss_dssp             ETTSCEECCEEESSGGGGSSEEEEEGGGCCC-------------CSSCCEECCS-----SSCCEETTCCGGGCSEEEEEE
T ss_pred             cCCCcEEEeeeCCCCCcceeEEEEecCCCcc-------------ccCCcccccC-----CceEEECCCCHHHCeEEEEEE
Confidence            9999999999998732 26899999754321             1122222221     113999999999999999999


Q ss_pred             EEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccccCce------eE
Q psy16652        164 IISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALSTGGS------IY  232 (384)
Q Consensus       164 ~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~------~~  232 (384)
                      .+..+...+..+.|.|..    +|.+... +....+.+|+.+.|.|.+.+.|. +.+.|++++..+......      ..
T Consensus       164 ~n~~~~~~s~~~~l~V~~~~~~~p~i~~~-~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  242 (292)
T 4dkd_C          164 LMGGRKVMSISIRLKVQKVIPGPPALTLV-PAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQ  242 (292)
T ss_dssp             CSTTSCEECCCEEEEEECCCCSSCEEEEE-SSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEE
T ss_pred             EeCCCceeEEEEEEEEeCCCCCCCeEEcc-CCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceee
Confidence            865554556678888886    5555432 33444579999999999987654 478899988765433221      22


Q ss_pred             eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      ....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|....
T Consensus       243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~~  283 (292)
T 4dkd_C          243 KVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRVVESA  283 (292)
T ss_dssp             EEEEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred             eEEEEEECccChhcCeEEEEEEecCCCCc-eeEEEEEEeeCC
Confidence            34589999999999999999999998875 677777776554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.93  E-value=3.2e-25  Score=184.96  Aligned_cols=212  Identities=17%  Similarity=0.201  Sum_probs=152.3

Q ss_pred             CCC-CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652          2 IAP-SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ   80 (384)
Q Consensus         2 ~~~-~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   80 (384)
                      |.+ .|.|++|+..+..        .+.+|.|.+++.+|+|.|.|.+.+.......        .+..  ..+.+...+.
T Consensus        29 ~~~~~~~W~~~g~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~--------~l~v--~~~~~~~~~~   90 (262)
T 3rjd_A           29 PGSSSTQWFLNGTATQT--------STPSYRITSASVNDSGEYRCQRGLSGRSDPI--------QLEI--HRGWLLLQVS   90 (262)
T ss_dssp             CCTTCEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEESSSCCCCCE--------EEEE--ECSSEEEEES
T ss_pred             CCCceEEEEECCEEeec--------cCCeEEEecCCcccCeEEEEEEecCCccccE--------EEEE--eccceEecCC
Confidence            344 8999999766542        3678999999999999999998764322111        0011  1122444556


Q ss_pred             ceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ...+.+|+.+.|.|.+ .+.+.+.+.|++++...       .             .    ......|.|.+++.+|+|.|
T Consensus        91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~-------~-------------~----~~~~~~l~i~~~~~~d~G~Y  146 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF-------K-------------F----FHWNSNLTILKTNISHNGTY  146 (262)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE-------E-------------E----EEECCCEEESSCCGGGCEEE
T ss_pred             CeEEecCCeEEEEEEccCCCCCceEEEEECCccc-------c-------------c----cCCCCeEEEEECChhhCEEE
Confidence            6678899999999999 56678899999966431       0             0    01123599999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCC-C----eEEEEeCCCcccccCcee
Q psy16652        160 KCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPA-P----TISWRRDNSAALSTGGSI  231 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~----~v~W~~~~~~~~~~~~~~  231 (384)
                      +|.+.+.. +..+..+.|.|..   +|.+...  ....+.+|+.+.|.|.+.+.|. +    .+.|++++..+...    
T Consensus       147 ~C~~~n~~-~~~~~~~~l~V~~~~~~p~~~~~--~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~----  219 (262)
T 3rjd_A          147 HCSGMGKH-RYTSAGISVTVKELFPAPVLNAS--VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR----  219 (262)
T ss_dssp             EEEEESSS-EEEEECEEEEEECSSCCCEEEES--SCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE----
T ss_pred             EEEEeCCC-CccccceEEEeccCCCCCeEeec--CceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc----
Confidence            99998554 5566777888875   3333222  2345789999999999988765 4    37899988765422    


Q ss_pred             EeccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652        232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGM  262 (384)
Q Consensus       232 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  262 (384)
                      .....|.|.++..+|+|.|+|.|.|..|...
T Consensus       220 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          220 NTSSEYQILTARREDSGLYWCEAATEDGNVL  250 (262)
T ss_dssp             ESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred             CCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence            2456899999999999999999999988753

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.93  E-value=3.6e-25  Score=176.87  Aligned_cols=163  Identities=15%  Similarity=0.193  Sum_probs=126.8

Q ss_pred             EEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      ..+.+|+++.|.|.+.+.|.+. +.|++++..+...      ...|.|.+++.+|+|.|+|.+.|..   .+..+.|.|.
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~   87 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVH   87 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC------SSEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEE
T ss_pred             eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC------ccEEEEecccccCCEEEEEEeCCCc---ccccEEEEEe
Confidence            5688999999999999877764 9999998766443      2789999999999999999998742   3556788888


Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+....             ....|.|.+++.+|+|.|+
T Consensus        88 ~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~~L~i~~v~~~D~G~Y~  153 (204)
T 3sgj_C           88 IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------------HNSDFYIPKATLKDSGSYF  153 (204)
T ss_dssp             CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEE
T ss_pred             cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-------------CCceEEECcCCcccCEEEE
Confidence            8887655444 677889999999999765 557899999998763211             3568999999999999999


Q ss_pred             EEEEe-CCcceEEEEEEEEeeeecCCccC
Q psy16652        351 CKAAN-KYGSAQKEIELFDRETQTGDETF  378 (384)
Q Consensus       351 C~a~n-~~g~~~~~~~l~v~~~~~~~~~~  378 (384)
                      |.|.| ..+..+..+.|.|.++++.|...
T Consensus       154 C~a~n~~~~~~s~~~~l~V~~~~~~P~i~  182 (204)
T 3sgj_C          154 CRGLVGSKNVSSETVQITITQGLAVSTIS  182 (204)
T ss_dssp             EEEEETTEEEECCCEEEEEEC--------
T ss_pred             EEEEeCCCceecCcEEEEEeCcCCCCccc
Confidence            99999 55566778899999887665443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=9.5e-25  Score=176.00  Aligned_cols=190  Identities=22%  Similarity=0.343  Sum_probs=140.8

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++...               ...++............|.|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~---------------~~~~~~~~~~~~~~~~~L~i~   68 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV---------------SNQRFEVIEFDDGSGSVLRIQ   68 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC---------------CCTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCC---------------CCCceeEEEEcCCCceEEEEe
Confidence            45678888888999999999999999998888899999977542               122222222113345689999


Q ss_pred             ec-CCCCCeeEEEEEEEccCcceeeeEEEEEecCC-------ccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCC
Q psy16652        150 EI-QETDAGIYKCEVIISLNNKVSAEVELIVRRPP-------IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN  221 (384)
Q Consensus       150 ~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~  221 (384)
                      ++ +.+|+|.|+|.+.+.. +..+..+.|.|..++       .+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus        69 ~v~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g  146 (212)
T 2yd6_A           69 PLRTPRDEAIYECVASNNV-GEISVSTRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAASGNPDPEITWFKDF  146 (212)
T ss_dssp             SCCTTTTCEEEEEEEEETT-EEEEEEEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETT
T ss_pred             ccCCCCCCeEEEEEEEcCC-CcEEEEEEEEEeccCccCCCcceee-cCCcceeEecCCCEEEEEEecCCCCCeEEEEECC
Confidence            99 5999999999998654 446667778886542       222 2234466889999999999999999999999998


Q ss_pred             CcccccC---cee-E---eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        222 SAALSTG---GSI-Y---RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       222 ~~~~~~~---~~~-~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                      ..+....   ... .   ....|.|.++..+|+|.|+|.|.|..|...+..+.|.+..+|.+
T Consensus       147 ~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          147 LPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             EEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             ccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence            7765431   111 1   13689999999999999999999999988777888888777654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=2.5e-24  Score=171.48  Aligned_cols=185  Identities=20%  Similarity=0.283  Sum_probs=142.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++....             ....++.+... ..+...|.|.+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~-~~~~~~L~i~~   68 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-------------ADGLKYRIQEF-KGGYHQLIIAS   68 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECC-------------CCSSSEEEEEE-TTTEEEEEECS
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECc-------------cCCCcEEEEEc-CCCEEEEEECc
Confidence            57888888889999999999999999988888999999775421             12234444332 34556899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc----CCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD----NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS  226 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~  226 (384)
                      ++.+|+|.|+|.+.+.. +..+..+.|.|..+|....    ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        69 ~~~~d~G~Y~C~~~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~  147 (197)
T 2j8h_A           69 VTDDDATVYQVRATNQG-GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN  147 (197)
T ss_dssp             CCGGGCSEEEEEEEETT-EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS
T ss_pred             CCHHhCEEEEEEEEECC-CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec
Confidence            99999999999998653 4456777788776554432    112456788999999999999999999999999987764


Q ss_pred             cCceeE----eccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        227 TGGSIY----RGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       227 ~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      ......    ....|.|.+ +..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       148 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  196 (197)
T 2j8h_A          148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVA  196 (197)
T ss_dssp             SSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcE-eEEEEEEEe
Confidence            443322    235899999 99999999999999998875 667777664

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=9.2e-25  Score=176.09  Aligned_cols=183  Identities=20%  Similarity=0.404  Sum_probs=139.1

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc------------cccCceeEeccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA------------LSTGGSIYRGNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....+.......|.|.+++.+|+|.|+|.+.+
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~   86 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEc
Confidence            356677899999999999998888899999988763            11233444568899999999999999999999


Q ss_pred             CCCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEE-EeccCCCeEEEEECCE-EecCCCceeeeee--eccCcc
Q psy16652        257 GVGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECH-VEAYPPPAIVWIKDGV-QIMNNQHYSVSHF--ATSDEF  331 (384)
Q Consensus       257 ~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-~~~~~~~~~~~~~--~~~~~~  331 (384)
                      ..+.. .+..+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+...........  ......
T Consensus        87 ~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~  166 (212)
T 1f97_A           87 EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP  166 (212)
T ss_dssp             TTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT
T ss_pred             cCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecC
Confidence            76632 36678888988887665555667889999999999 7999999999999998 7765433210000  000011


Q ss_pred             ccceEEEeecCCCCCeEEEEEEEeCCcce--EEEEEEEEeee
Q psy16652        332 SDTSLRVITIERRQFGQYACKAANKYGSA--QKEIELFDRET  371 (384)
Q Consensus       332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~  371 (384)
                      ....|.|.+++.+|.|.|+|.|.|..|..  +..+.|.|.+.
T Consensus       167 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             CCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence            36789999999999999999999999998  55677777654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=2e-24  Score=184.37  Aligned_cols=181  Identities=27%  Similarity=0.358  Sum_probs=147.6

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-E---ec--cEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-Y---RG--NILKIPNITKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~---~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... .   .+  ..|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus        11 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~   89 (305)
T 2nzi_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-S   89 (305)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEE-E
T ss_pred             ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCc-c
Confidence            456778999999999999998999999999988766443221 1   12  289999999999999999999987764 7


Q ss_pred             eEEEEEEEecCeEEecC-----CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEE
Q psy16652        264 RNIAVEVEFAPVITINR-----PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV  338 (384)
Q Consensus       264 ~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  338 (384)
                      ..+.|.|..+|.+..+.     ....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+...     .....|.|
T Consensus        90 ~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i  164 (305)
T 2nzi_A           90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-----RSFTSLVF  164 (305)
T ss_dssp             EEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC-----SSEEEEEE
T ss_pred             ceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc-----CCceEEEE
Confidence            77888888887764322     345577899999999999999999999999998877766655421     13567999


Q ss_pred             ee-cCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCc
Q psy16652        339 IT-IERRQFGQYACKAANKYGSAQKEIELFDRETQTGDE  376 (384)
Q Consensus       339 ~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~  376 (384)
                      .+ ++.+|.|.|+|.|.|..|....++.|.|..+|.+|.
T Consensus       165 ~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~  203 (305)
T 2nzi_A          165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPR  203 (305)
T ss_dssp             TTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCE
T ss_pred             ecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCC
Confidence            99 999999999999999999999999999998876553

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.93  E-value=2.5e-25  Score=180.15  Aligned_cols=184  Identities=23%  Similarity=0.459  Sum_probs=135.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc----eeEeccEE----EEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----SIYRGNIL----KIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~----~~~~~~~l----~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+.....    ....+..+    .|.+++.+|+|.|+|.+.|..+..
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~   95 (217)
T 2vr9_A           16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA   95 (217)
T ss_dssp             CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEE
T ss_pred             CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCcc
Confidence            4567789999999999999988899999999877654321    11222223    578899999999999999987765


Q ss_pred             eeeEEEEEEEe-cCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEe
Q psy16652        262 MKRNIAVEVEF-APVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       262 ~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      .+..+.+.|.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.....................|.|.
T Consensus        96 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~  175 (217)
T 2vr9_A           96 VSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS  175 (217)
T ss_dssp             ECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEES
T ss_pred             ccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEe
Confidence            44556666665 4555555666778899999999999 899999999999999987433222111110011135689999


Q ss_pred             ecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        340 TIERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +++.+|.|.|+|.|.|..|....+..+.+.....
T Consensus       176 ~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~~~  209 (217)
T 2vr9_A          176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKA  209 (217)
T ss_dssp             SCCSTTCEEEEEEEEETTEEEECCCEEEEEC---
T ss_pred             eCCHHHCeEEEEEEEcccceeccccEEEEEEeeh
Confidence            9999999999999999999998887666655543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.93  E-value=1.1e-25  Score=193.17  Aligned_cols=248  Identities=15%  Similarity=0.104  Sum_probs=150.3

Q ss_pred             CCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchh-HHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652          3 APSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGP-SIIVALSFLISLASSQRTPTISYISQE   81 (384)
Q Consensus         3 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~   81 (384)
                      .+.|.|++|+......  ......+.+|.|.+++.+|+|.|.|.+....... .........+.......+|.+...+..
T Consensus        51 ~~~~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~  128 (316)
T 3vh8_G           51 FNNFMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP  128 (316)
T ss_dssp             CCSEEEEESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS
T ss_pred             CceEEEEeCCCcccee--ecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC
Confidence            4678999997664321  1112356789999999999999999876421100 000000000011122345666665554


Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      . +.+|++++|.|.+. .+...+.|++++........             ..  ..........|.|.+++.+|+|.|+|
T Consensus       129 ~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~-------------~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C  191 (316)
T 3vh8_G          129 L-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRL-------------VG--QIHDGVSKANFSIGPMMLALAGTYRC  191 (316)
T ss_dssp             E-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEE-------------EC--EEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred             c-cCCCCeEEEEEcCC-CCCcEEEEEECCCcccccee-------------ee--eecCCCceEEEEECCCChhhCceEEE
Confidence            4 88999999999984 45668999998765311100             00  00012234579999999999999999


Q ss_pred             EEEEccCc----ceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee---
Q psy16652        162 EVIISLNN----KVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---  231 (384)
Q Consensus       162 ~~~~~~~~----~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---  231 (384)
                      .+.+..+.    ..+..+.|.|...   |.+... + ...+.+|+.++|.|.+.. +.+.+.|++++..+.......   
T Consensus       192 ~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~-~-~~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~  268 (316)
T 3vh8_G          192 YGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQ-P-GPKVQAGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKV  268 (316)
T ss_dssp             EEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEE-S-CSCCCTTSCCEEEEEESS-CCSEEEEEETTSSCCEEEECEECT
T ss_pred             EEecCCCCccccCCCCCEEEEecCCCCCCeEEeC-C-CCeecCCCcEEEEEECCC-CCcEEEEEECCCcCCCceeceecc
Confidence            99876543    1255677777642   333221 1 124688999999999974 678999999998765322111   


Q ss_pred             --EeccEEEEcCCCCCCCeEEEEEEEeCCCC----ceeeEEEEEEEecC
Q psy16652        232 --YRGNILKIPNITKTDRGTYYCVAQNGVGR----GMKRNIAVEVEFAP  274 (384)
Q Consensus       232 --~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p  274 (384)
                        .....|.|.+++  |+|.|+|.+.|..+.    ..+..+.|.|..+|
T Consensus       269 ~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          269 NRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             TSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             CCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence              122579999998  999999999996553    23666777776655

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=4.7e-25  Score=174.92  Aligned_cols=187  Identities=26%  Similarity=0.457  Sum_probs=145.2

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++....             ....++.+..+    ...|.|.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~-------------~~~~~~~~~~~----~~~L~i~   67 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK-------------LFDTRYSIREN----GQLLTIL   67 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECC-------------TTCTTEEEEGG----GTEEEES
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcc-------------ccCccEEEcCC----ccEEEEc
Confidence            456778887888889999999999999888888999999765421             11344544432    2369999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      +++.+|+|.|+|.+.+..+......+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~  146 (192)
T 2iep_A           68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR  146 (192)
T ss_dssp             SCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC-CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS
T ss_pred             CCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC-CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc
Confidence            999999999999998766555666677777776665533 4456788999999999999999999999999887765443


Q ss_pred             ee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        230 SI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       230 ~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      .. ..+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|
T Consensus       147 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            32 2455899999999999999999999988766677888887765

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.93  E-value=6e-24  Score=187.79  Aligned_cols=181  Identities=23%  Similarity=0.427  Sum_probs=145.6

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeC--CCcccc-----cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRD--NSAALS-----TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~~-----~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ....+.+|+.+.|.|.+.|.|.+.+.|+++  +..+..     ......    ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         8 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   87 (389)
T 2jll_A            8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG   87 (389)
T ss_dssp             CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence            345678899999999999999999999998  554432     112222    235899999999999999999999888


Q ss_pred             CceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEe
Q psy16652        260 RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       260 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      .. +..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+.......+.....   .....|.|.
T Consensus        88 ~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~---~~~~~L~i~  163 (389)
T 2jll_A           88 GH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST---GRKMILEIA  163 (389)
T ss_dssp             EE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC---SSCEEEEEC
T ss_pred             Cc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc---CCEEEEEEC
Confidence            75 78899999999988765554567889999999999999999999999999987654222221111   135679999


Q ss_pred             ecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        340 TIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      +++.+|.|.|+|.|.|..|.....+.|.+..+|..|
T Consensus       164 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P  199 (389)
T 2jll_A          164 PTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSP  199 (389)
T ss_dssp             CCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCC
T ss_pred             CCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCC
Confidence            999999999999999999999999999887776554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.93  E-value=2.4e-24  Score=176.07  Aligned_cols=187  Identities=21%  Similarity=0.335  Sum_probs=141.7

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR  264 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  264 (384)
                      .....+.+|+++.|.|.+.+.|.+.+.|++++..+......     ......|.|.+++.+|+|.|+|.+.|..+.. ..
T Consensus        26 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~  104 (231)
T 3ojm_B           26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NH  104 (231)
T ss_dssp             CSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             ceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc-cc
Confidence            35677899999999999999888999999998776543321     1233489999999999999999999987764 56


Q ss_pred             EEEEEEEec----CeEEe-cCCCcccccCCcEEEEEEEeccCCCeEEEEE----CCEEecCCCceeeeee--eccCcccc
Q psy16652        265 NIAVEVEFA----PVITI-NRPRQGQALQYDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHF--ATSDEFSD  333 (384)
Q Consensus       265 ~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~--~~~~~~~~  333 (384)
                      .+.|.|...    |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+...........  ........
T Consensus       105 ~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  184 (231)
T 3ojm_B          105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA  184 (231)
T ss_dssp             EEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCT
T ss_pred             cEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCc
Confidence            677777653    33222 2345667889999999999999999999999    8877755543322221  11122345


Q ss_pred             ceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652        334 TSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET  377 (384)
Q Consensus       334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  377 (384)
                      ..|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|..|..
T Consensus       185 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred             cEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence            67999999999999999999999999999999999998876654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=172.38  Aligned_cols=174  Identities=21%  Similarity=0.341  Sum_probs=136.7

Q ss_pred             CCCceEEeecCceEEEEEE-ecccCC-CeEEEEeCCCccccc--Ccee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        188 NSTRSVIVSEGQTVYLYCY-ANGFPA-PTISWRRDNSAALST--GGSI--YRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       188 ~~~~~~~~~~g~~~~l~C~-~~~~~~-~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ..+....+.+|+.+.|.|. +.+.|. +.+.|++++..+...  ....  ..+..|.|.+++.+|+|.|+|.+.+..+..
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            3456678999999999999 788888 899999998776422  1221  235689999999999999999999865543


Q ss_pred             ee--eEEEEEEE-------ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccc
Q psy16652        262 MK--RNIAVEVE-------FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS  332 (384)
Q Consensus       262 ~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  332 (384)
                      ..  ..+.+.+.       .+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+....+..         ..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~---------~~  163 (201)
T 3s97_C           93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS---------TS  163 (201)
T ss_dssp             EEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEE---------TT
T ss_pred             chhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeec---------CC
Confidence            22  23333332       45666666667778899999999999999999999999998776443221         13


Q ss_pred             cceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       333 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      ...|.|.+++.+|.|.|+|.|.|..|....++.|.|++
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA  201 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence            67899999999999999999999999999999998863

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.93  E-value=6.1e-24  Score=169.20  Aligned_cols=185  Identities=17%  Similarity=0.332  Sum_probs=143.7

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++...              ....++.+..  .....+|.|.
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~   68 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL--------------IQSRKYKMSS--DGRTHTLTVM   68 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEE--------------CCCSSEEEEE--SSSEEEEEEE
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEEC--------------CCCccEEEEe--CCCEEEEEEe
Confidence            45678888888899999999999999988888899999976541              2334555554  4456689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccC--CCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN--STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~  227 (384)
                      +++.+|+|.|+|.+.+.. +.....+.|.|..+|.....  ......+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus        69 ~~~~~d~G~Y~C~~~n~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~  147 (197)
T 3lcy_A           69 TEEQEDEGVYTCIATNEV-GEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS  147 (197)
T ss_dssp             CCSGGGCEEEEEEEECSS-CEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             cCCccCCEEEEEEEECCC-CceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC
Confidence            999999999999998543 44566677777766554432  235567889999999999999999999999998877655


Q ss_pred             CceeEec----cEEEEcCCCC-CCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        228 GGSIYRG----NILKIPNITK-TDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       228 ~~~~~~~----~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      .......    ..|.|.++.. +|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       148 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  196 (197)
T 3lcy_A          148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQD  196 (197)
T ss_dssp             SSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             CceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce-EEEEEEEEec
Confidence            4443322    5799999985 89999999999998875 6677777653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.93  E-value=6.8e-26  Score=195.37  Aligned_cols=252  Identities=12%  Similarity=0.132  Sum_probs=147.5

Q ss_pred             CCCCCcchhccccCCCC-------CCCCCC---------CCceEEEEEeeecceEEEEEEEeeeccchhHHH-HHHHHHh
Q psy16652          2 IAPSPFDFVNRFQNTST-------PWDPST---------QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSII-VALSFLI   64 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~-------~~~~~~---------~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~-~~~~~~~   64 (384)
                      |.+.+.||+++.+....       ...+..         ....+|.|.+++.+|+|.|.|.+.......... ..-...+
T Consensus        32 p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l  111 (327)
T 2wng_A           32 PVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTEL  111 (327)
T ss_dssp             SCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEE
T ss_pred             CCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEE
Confidence            56789999986442100       001111         567789999999999999999987752210000 0000001


Q ss_pred             hhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652         65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS  142 (384)
Q Consensus        65 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
                      .......+|.+.  .....+.+|+.+.|.|.+.+.+++  .+.|++++............    ...+..|.+.      
T Consensus       112 ~V~~~p~~p~i~--~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~----~~~~~~~~~~------  179 (327)
T 2wng_A          112 SVRAKPSAPVVS--GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP----VGESVSYSIH------  179 (327)
T ss_dssp             EEEBCCCCCEEE--CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEEC----SSCCSCEEEE------
T ss_pred             EEEecCCCceee--ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccccc----ccCCCceEEE------
Confidence            111233344444  234568899999999999886543  89999987543211100000    0011223322      


Q ss_pred             eEEEEEeecCCCCCeeEEEEEEEccCcc--eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEeccc-CCC-eEE
Q psy16652        143 TYILSIKEIQETDAGIYKCEVIISLNNK--VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TIS  216 (384)
Q Consensus       143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~  216 (384)
                       ..|.|.....+|.|.|+|.+.+..+..  ......+  .+..+|.+.....   .+.+|+.+.|.|.+.+. |++ .+.
T Consensus       180 -s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~---~~~~G~~v~l~C~~~g~~p~~~~v~  255 (327)
T 2wng_A          180 -STAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ---PVRAENQVNVTCQVRKFYPQRLQLT  255 (327)
T ss_dssp             -EEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEE---CCSSTTCCEEEEEEEEEBSSCEEEE
T ss_pred             -EEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecC---CcCCCCcEEEEEEEccccCCCcEEE
Confidence             258888777788899999998765432  2223333  2344554432211   16789999999999884 444 899


Q ss_pred             EEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        217 WRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       217 W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      |++++..+....         +.......|.|..+..+|+|.|+|.|.|..+...++.+.+.
T Consensus       256 W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~  317 (327)
T 2wng_A          256 WLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLK  317 (327)
T ss_dssp             EEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC
T ss_pred             EEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEE
Confidence            999988764321         11112246889999999999999999999887656555443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.93  E-value=7.5e-25  Score=176.64  Aligned_cols=177  Identities=25%  Similarity=0.433  Sum_probs=134.4

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc------eeEecc-----EEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG------SIYRGN-----ILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~~-----~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....      ....+.     .|.|.+++.+|+|.|+|.+.|..
T Consensus        16 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~   95 (212)
T 2v9r_A           16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL   95 (212)
T ss_dssp             CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETT
T ss_pred             CCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCC
Confidence            4567789999999999999888899999999876643321      111222     24445678999999999999987


Q ss_pred             CCceeeEEEEEEEec-CeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652        259 GRGMKRNIAVEVEFA-PVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       259 ~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (384)
                      +...+..+.|.|... +.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.........        ....|
T Consensus        96 g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~--------~~~~L  167 (212)
T 2v9r_A           96 GEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI--------RGGKL  167 (212)
T ss_dssp             EEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE--------ETTEE
T ss_pred             CceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc--------cCCeE
Confidence            665455667777653 344445556678899999999999 89999999999999998765432221        35689


Q ss_pred             EEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeeecC
Q psy16652        337 RVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQTG  374 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~  374 (384)
                      .|.+++.+|.|.|+|.|.|..|...+. +.|.|..+|..
T Consensus       168 ~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF  206 (212)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             EEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence            999999999999999999999987664 89999877643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=5e-24  Score=171.80  Aligned_cols=172  Identities=18%  Similarity=0.267  Sum_probs=135.0

Q ss_pred             eecCceEEEEEEeccc-CCCeEEEEeCCCcccccCceeEe--c--cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        195 VSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYR--G--NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ...++.+.|.|.+.+. |.+.+.|++++..+.........  +  ..|.|.+++.+|+|.|+|.+.|..+.. ...+.+.
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEE
Confidence            4568889999999875 47799999999877655443322  2  359999999999999999999976654 4455554


Q ss_pred             EEe--------------------cCeE-EecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeecc
Q psy16652        270 VEF--------------------APVI-TINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS  328 (384)
Q Consensus       270 v~~--------------------~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  328 (384)
                      +..                    .|.+ ...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+....  
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--  170 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA--  170 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET--
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC--
Confidence            432                    3333 33444567889999999999999999999999999999887776655321  


Q ss_pred             CccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       329 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                        .....|.|.+++.+|.|.|+|.|.|..|....++.|.|..|
T Consensus       171 --~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          171 --GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             --TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             --CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence              12468999999999999999999999999999999988743

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.92  E-value=7.6e-25  Score=181.77  Aligned_cols=213  Identities=15%  Similarity=0.200  Sum_probs=125.1

Q ss_pred             eecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEe
Q psy16652         35 VTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKM  109 (384)
Q Consensus        35 ~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~  109 (384)
                      ++.+|+|.|.|.+.....   ....+..       ..++.+...+....+.+|++++|.|.+.+.+     .+.+.|+++
T Consensus        11 v~~~dsg~Y~C~a~g~~~---~~~~~~~-------~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYSF---TNYWMNW-------LRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             -------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred             ecCCccEEEEEcCchhhh---hhhhhhe-------eeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence            789999999999882211   1111111       1256777778888999999999999998876     379999996


Q ss_pred             CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccc
Q psy16652        110 DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIIS  186 (384)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~  186 (384)
                      +.......+.............|+.+..  .....+|.|.+++.+|+|.|+|.+.+...........+.|..   +|.+.
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~  158 (254)
T 2c1o_A           81 RPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVS  158 (254)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEE
T ss_pred             CCCCCceEEEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeE
Confidence            6432111111111100111235776655  456678999999999999999999755433333445666653   33333


Q ss_pred             cCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCCCccccc-----------CceeEeccEEEEcCCCCCCCeEEEEE
Q psy16652        187 DNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDNSAALST-----------GGSIYRGNILKIPNITKTDRGTYYCV  253 (384)
Q Consensus       187 ~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~  253 (384)
                      ...+. .....|+.+.|.|.+.+ .|+ +.+.|++++..+...           ++.......|.|.++..+|+|.|+|.
T Consensus       159 ~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~  237 (254)
T 2c1o_A          159 IFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE  237 (254)
T ss_dssp             EECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEE
T ss_pred             eecCC-hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEE
Confidence            21111 11235789999999987 444 469999999876543           11112345799999999999999999


Q ss_pred             EEeCCCC
Q psy16652        254 AQNGVGR  260 (384)
Q Consensus       254 ~~~~~~~  260 (384)
                      |.|....
T Consensus       238 a~n~~~~  244 (254)
T 2c1o_A          238 ATHKTST  244 (254)
T ss_dssp             EECTTCS
T ss_pred             EEcCCCC
Confidence            9997554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.92  E-value=9.2e-25  Score=176.11  Aligned_cols=202  Identities=23%  Similarity=0.292  Sum_probs=141.4

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++........         ....+.....+.......|.|
T Consensus         6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~i   76 (212)
T 2v9r_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD---------DPRSHRMLLPSGSLFFLRIVH   76 (212)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTT---------CTTCSEEECTTSCEEESSCCC
T ss_pred             ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccc---------ccccceEEecCCcEEEEEEEe
Confidence            45578888888889999999999999998888889999997754221100         000000011100101113556


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~  227 (384)
                      .+++..|+|.|+|.+.+..+...+..+.|.|...+......+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus        77 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~  156 (212)
T 2v9r_A           77 GRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK  156 (212)
T ss_dssp             CSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT
T ss_pred             cCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC
Confidence            77899999999999987655444566777776543333333556778999999999998 88899999999998877654


Q ss_pred             C-ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEec
Q psy16652        228 G-GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN  279 (384)
Q Consensus       228 ~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~  279 (384)
                      . .....+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|.+...
T Consensus       157 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~  209 (212)
T 2v9r_A          157 DERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA  209 (212)
T ss_dssp             STTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred             cceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhh
Confidence            3 334567799999999999999999999988876555689999999887653

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=4.1e-24  Score=169.76  Aligned_cols=183  Identities=22%  Similarity=0.308  Sum_probs=138.0

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++......            ...++.+..  ..+...|.|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~------------~~~~~~~~~--~~~~~~L~i~~   69 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS------------TLPGVQISF--SDGRAKLTIPA   69 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTT------------TSTTCEEEE--ETTEEEEEESS
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccc------------cCCceEEEe--CCCEEEEEECC
Confidence            4677888888889999999999999988888899999977653111            012333333  34457899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~  227 (384)
                      ++.+|+|.|+|.+.+.. +.....+.|.|..   +|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus        70 ~~~~d~G~Y~C~~~n~~-~~~~~~~~l~v~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~  147 (194)
T 2a38_A           70 VTKANSGRYSLKATNGS-GQATSTAELLVKAETAPPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS  147 (194)
T ss_dssp             CCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCEEEEEE-ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred             CCcccCEEEEEEEEcCC-ceEeEEEEEEEccCCCCCEEE-eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC
Confidence            99999999999998654 3455566677763   34333 2244567899999999999999999999999999877654


Q ss_pred             CceeEe--c--cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        228 GGSIYR--G--NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       228 ~~~~~~--~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ......  +  ..|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus       148 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  193 (194)
T 2a38_A          148 LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA-TSTAELLV  193 (194)
T ss_dssp             SSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCce-EEEEEEEE
Confidence            443322  2  279999999999999999999988874 55666665

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.92  E-value=6.2e-24  Score=168.30  Aligned_cols=174  Identities=20%  Similarity=0.340  Sum_probs=136.1

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEE-eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMK-MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ++.+...+....+.+|++++|.|.+.+.+ .+.+.|++ ++....             ....++.+... ......|.|.
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~-------------~~~~~~~~~~~-~~~~~~L~i~   67 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------------PNQQRISVVWN-DDDSSTLTIY   67 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC-------------CBSSSEEEEEE-ETTEEEEEEC
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc-------------CCCCeEEEEEC-CCCceEEEEc
Confidence            46788888899999999999999998865 78999999 443210             12344444332 2456789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      +++.+|+|.|+|.+.+..++..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~  146 (191)
T 1epf_A           68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD  146 (191)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEEC-CSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC
T ss_pred             cCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecC-CCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC
Confidence            999999999999999776667778888888888776543 4456788999999999999999999999999887654322


Q ss_pred             ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                         ....+..|.|.++..+|+|.|+|.|.|..+.
T Consensus       147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             ceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence               1223458999999999999999999997744

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=184.66  Aligned_cols=241  Identities=14%  Similarity=0.101  Sum_probs=152.3

Q ss_pred             CcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcc-cCCCCeeeeCcc--
Q psy16652          6 PFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASS-QRTPTISYISQE--   81 (384)
Q Consensus         6 ~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--   81 (384)
                      +.|++|+.+..... .........+|.|.+++.+|+|.|.|.+.+..+.....   ...+.+... ...|.+...+..  
T Consensus        28 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~---~~~~~v~v~~p~~~~~~~~~~~~~  104 (289)
T 3mjg_X           28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDE---RKRLYIFVPDPTVGFLPNDAEELF  104 (289)
T ss_dssp             CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CC---CEEEEEECCCTTCCBCCCCHHHHE
T ss_pred             EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCc---EEeEEEEEECCCcCcccCCCCcce
Confidence            89999986652111 01111225799999999999999999988743210000   000000011 112222221121  


Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      ..+.+|+++.|.|.+. .|.+.+.|++.+....   +.           ..+  ..  ..   .+.    ...|+|.|+|
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~---~~-----------~~~--~~--~~---~~~----~~~d~G~Y~C  158 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVA---LP-----------VPY--DH--QR---GFS----GIFEDRSYIC  158 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSC---CC-----------CCE--ET--TT---EEE----ECCCSSEEEE
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCc---cc-----------eee--cC--Cc---Cee----eeccCcEEEE
Confidence            5588999999999998 5667899999763210   00           000  00  00   011    3579999999


Q ss_pred             EEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---------
Q psy16652        162 EVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---------  230 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---------  230 (384)
                      .+.+..+...+..+.|.|..  +|.+... +....+.+|+++.|.|.+.+.|.+.+.|++++.........         
T Consensus       159 ~a~n~~~~~~s~~~~l~v~~~~~p~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~  237 (289)
T 3mjg_X          159 KTTIGDREVDSDAYYVYRLQVSSINVSVN-AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP  237 (289)
T ss_dssp             EEEETTEEEECCCEEEEECCCCCCCCEEE-ESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTT
T ss_pred             EEEeCCceeeeeeEEEEecCCCCCCcEEe-CCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcc
Confidence            99876666666666777765  3433322 23356889999999999999999999999876543221111         


Q ss_pred             eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE
Q psy16652        231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT  277 (384)
Q Consensus       231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~  277 (384)
                      ......|.|.+++.+|+|.|+|.|.|..|.. +....|.|...|...
T Consensus       238 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~~~~~  283 (289)
T 3mjg_X          238 YHIRSILHIPSAELEDSGTYTCNVTESVNDH-QDEKAINITVVESGH  283 (289)
T ss_dssp             TEEEEEEEESSCCSSCCEEEEEEEEETTTTE-EEEEEEEEEEEC---
T ss_pred             eEEEEEEEEcccChhhCcEEEEEeecCCCCc-eeEEEEEEEEEecCc
Confidence            1234689999999999999999999999986 778888888777543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.92  E-value=5.6e-26  Score=197.28  Aligned_cols=207  Identities=18%  Similarity=0.227  Sum_probs=153.8

Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc--eeE
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIY  232 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~  232 (384)
                      |.|.|+|...+     ....+.+.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  ...
T Consensus       136 ~~~~~~C~~~~-----~l~~l~~~~c~~P~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~  209 (347)
T 2ifg_A          136 PEQKLQCHGQG-----PLAHMPNASCGVPTLKV-QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL  209 (347)
T ss_dssp             GGGCCCCSSSS-----CSSCCCCTTCCCCEEEE-ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCS
T ss_pred             cccCCCCCCCh-----HHhcCCcccCCCCceec-cCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceec
Confidence            56899997643     11111112222343332 23445688999999999999999999999998876443221  223


Q ss_pred             eccEEEEcCCCCCCCe-EEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC
Q psy16652        233 RGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG  311 (384)
Q Consensus       233 ~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~  311 (384)
                      ....|.|.+++.+|+| .|+|.+.|..|.. +..+.|.|..+|.+    ....+..|+.+.|.|.+.|.|.|.+.|+++|
T Consensus       210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g  284 (347)
T 2ifg_A          210 PSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG  284 (347)
T ss_dssp             SEEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred             ccceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence            4568999999999999 9999999987775 67788888888886    1223467899999999999999999999999


Q ss_pred             EEecCCCceeeeeee--ccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        312 VQIMNNQHYSVSHFA--TSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       312 ~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      ..+............  .......++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            999865543332211  1112235679999999999999999999999999999999987764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.92  E-value=2e-26  Score=199.75  Aligned_cols=235  Identities=17%  Similarity=0.248  Sum_probs=158.2

Q ss_pred             CCCCCcchhccccCCCCC--CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe--ee
Q psy16652          2 IAPSPFDFVNRFQNTSTP--WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI--SY   77 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~   77 (384)
                      |.+.+.|++|+.+.....  ..+....+.+|.|.+++.+|+|.|.|.+.+..........      +... ..+..  ..
T Consensus        53 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~------l~V~-~~~~~~~~~  125 (339)
T 3o4o_C           53 PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE------LRVF-ENTDAFLPF  125 (339)
T ss_dssp             SCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEEE------EEEE-CSCGGGHHH
T ss_pred             CCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEEE------EEEE-cCCCccccc
Confidence            567899999986643221  1223345678999999999999999998875321111000      0001 11111  11


Q ss_pred             eCcceeeeccCcEEEEEE-----eecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         78 ISQEQIKDIAQTADLKCS-----VQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ......+.+|+.+.|.|.     ..+.+.+.+.|++++.....             ...++.+..    +...|.|.+++
T Consensus       126 ~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~-------------~~~~~~~~~----~~~~L~i~~v~  188 (339)
T 3o4o_C          126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK-------------DNEKFLSVR----GTTHLLVHDVA  188 (339)
T ss_dssp             HCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT-------------TCSSEEECT----TSSEEEESSCC
T ss_pred             cccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC-------------CCceeEEcC----CcceEEEcccC
Confidence            122346789999999999     66778889999997764211             112333322    22379999999


Q ss_pred             CCCCeeEEEEEEEccCc---ceeeeEEEEEecC-----CccccCCCceEEeecCceEEEEEEe---cccC-CCeEEEEeC
Q psy16652        153 ETDAGIYKCEVIISLNN---KVSAEVELIVRRP-----PIISDNSTRSVIVSEGQTVYLYCYA---NGFP-APTISWRRD  220 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~-~~~v~W~~~  220 (384)
                      .+|+|.|+|.+.+..++   ..+..+.|.|...     |.+. ..+....+.+|+.+.|.|.+   .+.| .+.+.|+++
T Consensus       189 ~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~-~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~  267 (339)
T 3o4o_C          189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN  267 (339)
T ss_dssp             GGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEEC-CCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESS
T ss_pred             HhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEe-cCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEEC
Confidence            99999999999876554   3466777877643     3333 22455568899999999999   8888 779999998


Q ss_pred             CCcccccC---------cee-Eecc------EEEEcCCCCCCC-eEEEEEEEeCCCCc
Q psy16652        221 NSAALSTG---------GSI-YRGN------ILKIPNITKTDR-GTYYCVAQNGVGRG  261 (384)
Q Consensus       221 ~~~~~~~~---------~~~-~~~~------~l~i~~~~~~d~-G~Y~C~~~~~~~~~  261 (384)
                      +..+....         ... ...+      .|.|.++..+|+ |.|+|.|.|..|..
T Consensus       268 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  325 (339)
T 3o4o_C          268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ  325 (339)
T ss_dssp             SSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEE
T ss_pred             CeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCce
Confidence            87653211         110 1111      799999999997 99999999988865

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.92  E-value=1.1e-24  Score=181.98  Aligned_cols=218  Identities=16%  Similarity=0.193  Sum_probs=151.8

Q ss_pred             CCcchhccccCCCCCCCCCCCCceEEEEEee---ecceEEE--EEEEeeeccchhHHHHHHHHHhhhhcc-cCCCCeeee
Q psy16652          5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEV---TGEKVTS--VILLFKMSVAGPSIIVALSFLISLASS-QRTPTISYI   78 (384)
Q Consensus         5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~   78 (384)
                      .+.|++|+.++..    .....+..|.|..+   +.+|+|.  |.|.+.+........      ..+... ..+|.+.  
T Consensus        37 ~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~------~~l~V~~~p~p~~~--  104 (265)
T 2oz4_A           37 QVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL------QTVTIYSFPAPNVI--  104 (265)
T ss_dssp             EEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE------EEEEEECCCCCEEE--
T ss_pred             EEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE------EEEEEeCCCCceee--
Confidence            8999999876653    22334457777776   7788874  999998753321110      000111 1124444  


Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      +....+.+|+.++|.|.+.  +.+.+.|  ++....                        .......|.|..+..+|.|.
T Consensus       105 ~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~------------------------~~~~~~~l~i~~~~~~~~g~  156 (265)
T 2oz4_A          105 LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQ------------------------PLGPRAQLLLKATPEDNGRS  156 (265)
T ss_dssp             ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSS------------------------CCSSEECCEEECCGGGTTEE
T ss_pred             cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEcc------------------------CCCCcEEEEEccccccCCce
Confidence            3456688999999999988  7789999  444310                        01123458899999999999


Q ss_pred             EEEEEEEccCccee---eeEEEEEecCCccccCC-CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652        159 YKCEVIISLNNKVS---AEVELIVRRPPIISDNS-TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG  234 (384)
Q Consensus       159 Y~C~~~~~~~~~~~---~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  234 (384)
                      |+|.+.+...+...   ..+.|.|..+|...... +....+.+|+.+.|.|.+.|.|.+.+.|++++......       
T Consensus       157 Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~-------  229 (265)
T 2oz4_A          157 FSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------  229 (265)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------
T ss_pred             EEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCC-------
Confidence            99999866644433   66778888777654332 44667899999999999999999999999998732221       


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      ..+.  .++.+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus       230 g~~~--~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  264 (265)
T 2oz4_A          230 GESV--TVTRDLEGTYLCRARSTQGEV-TREVTVNVLS  264 (265)
T ss_dssp             TSCE--ECCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CcEE--EeehhhCeEEEEEEECCCCcE-EEEEEEEEec
Confidence            2222  378899999999999988875 6778888765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.92  E-value=3.5e-23  Score=163.82  Aligned_cols=175  Identities=26%  Similarity=0.421  Sum_probs=131.0

Q ss_pred             CCCCeeeeCcceeeec-cCcEEEEEEeecCCC--ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         71 RTPTISYISQEQIKDI-AQTADLKCSVQYADD--YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      .+|.|.. +....+.+ |+++.|.|.+.+.+.  +.+.|++++.....               .+.      ......|.
T Consensus         2 ~~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~---------------~~~------~~~~~~L~   59 (190)
T 2wv3_A            2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA---------------TRK------NASNMEYR   59 (190)
T ss_dssp             -CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTT---------------CCB------CCSEEEEE
T ss_pred             CCCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcc---------------cce------EeccEEEE
Confidence            4677766 44455556 999999999988765  78999997754211               110      11346899


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEe--CCCccc
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR--DNSAAL  225 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~--~~~~~~  225 (384)
                      |.+++.+|+|.|+|.+.+.  +..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++  ++..+.
T Consensus        60 i~~~~~~d~G~Y~C~~~n~--~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           60 INKPRAEDSGEYHCVYHFV--SAPKANATIEVKAAPDITGH-KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             ESSCCGGGCEEEEEEEEET--TEEEEEEEEEEECCCEEEEE-CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             EecCCcccCEEEEEEEEeC--CcccccEEEEEecCCccccc-CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence            9999999999999999876  66777888999888876643 455678999999999999999999999999  444332


Q ss_pred             ---ccCceeEe----ccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        226 ---STGGSIYR----GNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       226 ---~~~~~~~~----~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                         ........    ...|.|.++. .+|+|.|+|.|.|..|.. ...+.|.|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  189 (190)
T 2wv3_A          137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVR  189 (190)
T ss_dssp             CCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             eecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcc-eeEEEEEEE
Confidence               11122211    1379999999 799999999999998875 666666664

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=2.9e-23  Score=163.37  Aligned_cols=166  Identities=20%  Similarity=0.318  Sum_probs=129.0

Q ss_pred             EEeecCceEEEEEEecccCCC--eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ..+.+|+.+.|.|.+.+.+.+  .+.|++++..+...... .....|.|.  +.+|+|.|+|.+.|.    ....+.|.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V   80 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQL   80 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEE
Confidence            457899999999999876666  89999988766543221 123356665  689999999999982    245678889


Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccC-CCeEEEEE---CCEE-ecCC--CceeeeeeeccCccccceEEEeecC-
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYP-PPAIVWIK---DGVQ-IMNN--QHYSVSHFATSDEFSDTSLRVITIE-  342 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-  342 (384)
                      ..+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++   ++.. +...  .++.+..  .   .....|.|.+++ 
T Consensus        81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~L~i~~v~~  155 (184)
T 3b5h_A           81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--S---QGRSELHIENLNM  155 (184)
T ss_dssp             CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--E---TTEEEEEECSCCT
T ss_pred             ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe--c---CCeeEEEEeeccc
Confidence            9999988877777788999999999999999 78999999   4544 3322  3444332  1   134589999999 


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        343 RRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      .+|.|.|+|.|.|..|....++.|.|.+
T Consensus       156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          156 EADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cccCceEEEEEEeCCCcceEEEEEEEec
Confidence            8999999999999999999999998864

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=167.22  Aligned_cols=176  Identities=15%  Similarity=0.235  Sum_probs=126.9

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      |.+.. +....+.+|+.+.|.|.... .|.+.+.|++++..              +..+.++.+..+...+...|.|.++
T Consensus         4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~--------------l~~~~~~~~~~~~~~g~~~L~I~~v   68 (207)
T 3rbs_A            4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--------------IFEGPKYKMHIDRNTGIIEMFMEKL   68 (207)
T ss_dssp             --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEE--------------ECSSSSCEEEECTTTCEEEEEESCC
T ss_pred             Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEE--------------CccCCCEEEEEeCCCCEEEEEECCC
Confidence            44443 33567899999999999864 68889999998865              2334566666544456778999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEe---------------------cCCccccCCCceEEeecCceEEEEEEeccc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVR---------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGF  210 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  210 (384)
                      +.+|+|.|+|.+.|   +.......+.+.                     .+|.+...  ....+.+|+.+.|.|.+.|.
T Consensus        69 ~~~D~G~Y~C~a~N---g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~--~~~~v~~g~~v~l~C~v~g~  143 (207)
T 3rbs_A           69 QDEDEGTYTFQLQD---GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY--LSWEVTGECNVLLKCKVANI  143 (207)
T ss_dssp             CGGGCEEEEEEEEE---TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE--EEEEEETTTEEEEEEEEESC
T ss_pred             ChhhCEEEEEEEEC---CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEec--CCcEEcCCCcEEEEEEEeCC
Confidence            99999999999986   333333333221                     12322211  13568899999999999998


Q ss_pred             -CCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        211 -PAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       211 -~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                       |.|.+.|++++..+........  ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.
T Consensus       144 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~  204 (207)
T 3rbs_A          144 KKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLV  204 (207)
T ss_dssp             CTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEC
T ss_pred             CCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEE-EEEEEEe
Confidence             8999999999987765433222  23469999999999999999999998875 4555554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.91  E-value=1.2e-24  Score=174.92  Aligned_cols=180  Identities=21%  Similarity=0.395  Sum_probs=136.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc------------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL------------STGGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+.            ...+.......|.|.+++.+|+|.|+|.+.+.
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   90 (209)
T 1nbq_A           11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (209)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecC
Confidence            455668899999999999988888999999886621            12233344578999999999999999999997


Q ss_pred             CCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeee--ccCcccc
Q psy16652        258 VGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFA--TSDEFSD  333 (384)
Q Consensus       258 ~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~  333 (384)
                      .+.. .+..+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+............  .......
T Consensus        91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
T 1nbq_A           91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT  170 (209)
T ss_dssp             TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTT
T ss_pred             CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCc
Confidence            6532 356778888888877665666678899999999997 89999999999999888655432110000  0001135


Q ss_pred             ceEEEeecCCCCCeEEEEEEEeCCcceE--EEEEEEEe
Q psy16652        334 TSLRVITIERRQFGQYACKAANKYGSAQ--KEIELFDR  369 (384)
Q Consensus       334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~  369 (384)
                      ..|.|.+++.+|.|.|+|.|.|..|...  ..+.|.|.
T Consensus       171 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             ceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            7899999999999999999999999984  44555543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.91  E-value=2.5e-23  Score=167.21  Aligned_cols=171  Identities=19%  Similarity=0.293  Sum_probs=130.7

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccC-------------------c-eeEeccEEEEcCCCCCCCeEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG-------------------G-SIYRGNILKIPNITKTDRGTYYC  252 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~-------------------~-~~~~~~~l~i~~~~~~d~G~Y~C  252 (384)
                      ..+.+|+++.|.|...+.+.+.+.|++++.......                   + ....+..|.|.+++.+|+|.|+|
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C   88 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence            457899999999998887888999998754322110                   0 11123479999999999999999


Q ss_pred             EEEeCCCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccC
Q psy16652        253 VAQNGVGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD  329 (384)
Q Consensus       253 ~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  329 (384)
                      .+.+..+......+.|.|..+   |.+......  +..|+.+.|.|.+.+.| +.+.|+++|..+....++.+..     
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~-----  160 (208)
T 3r4d_A           89 DMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ-----  160 (208)
T ss_dssp             EEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEET-----
T ss_pred             EEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcC-----
Confidence            999976544567777888765   555544433  88899999999999966 7999999999998777665542     


Q ss_pred             ccccceEEEeecCCCCCeEEEEEEEeCCcceEE-EEEEEEeeeec
Q psy16652        330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQK-EIELFDRETQT  373 (384)
Q Consensus       330 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~  373 (384)
                        ...+|.|.+++.+|.|.|+|.|.|..|+..+ .++|.|..++.
T Consensus       161 --~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          161 --NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             --TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             --CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence              3478999999999999999999999998764 47777776654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=5.6e-24  Score=172.17  Aligned_cols=190  Identities=22%  Similarity=0.353  Sum_probs=136.1

Q ss_pred             cccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         68 SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        68 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ....+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++......            ......+..........|.
T Consensus         5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~------------~~~~~~~~~~~~~~~~~l~   72 (217)
T 2vr9_A            5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN------------EKKSHRVQFKDGALFFYRT   72 (217)
T ss_dssp             -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCS------------SSSSSEEECTTSCEEESSC
T ss_pred             cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCC------------CccceeEEecCCceEEEEE
Confidence            4567889999999999999999999999988888899999977542111            0001111111122223357


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEec-CCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR-PPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL  225 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~  225 (384)
                      |.+++.+|+|.|+|.+.+..+...+..+.|.|.. ++.+. ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR-VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCS-BCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             eccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcE-ECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            8899999999999999876554445556666654 33332 33456778999999999999 889999999999987665


Q ss_pred             cc--------Cc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        226 ST--------GG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       226 ~~--------~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      ..        .. ....+..|.|.+++.+|+|.|+|.|.|..|...+....|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             CCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            21        11 12245689999999999999999999998876444444443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=170.16  Aligned_cols=177  Identities=21%  Similarity=0.310  Sum_probs=137.4

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ....+.+...+....+.+|+++.|.|.+.+.+.+.+.|++++....                         ......|.|
T Consensus        15 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~-------------------------~~~~~~L~i   69 (218)
T 3k0w_A           15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP-------------------------NGNTSELIF   69 (218)
T ss_dssp             ----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECT-------------------------TCCSSEEEE
T ss_pred             cCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECC-------------------------CCCCCEEEE
Confidence            4567789999999999999999999999888888999999765421                         112247999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC---------------ccccCCCceEEeecCceEEEEEEecccCCC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP---------------IISDNSTRSVIVSEGQTVYLYCYANGFPAP  213 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  213 (384)
                      .+++.+|+|.|+|.+.+..+...+..+.|.|...+               .+. ..+....+.+|+.+.|.|.+.+.|.+
T Consensus        70 ~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~  148 (218)
T 3k0w_A           70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC-VEPTSQKLMPGSTLVLQCVAVGSPIP  148 (218)
T ss_dssp             TTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEE-ECCCCEEECTTCCEEEECEEEBSSCC
T ss_pred             ccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEE-ECCCceeecCCCcEEEEEEecccCCC
Confidence            99999999999999987655555677888887653               222 22445678899999999999999999


Q ss_pred             eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        214 TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       214 ~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                      .+.|++++..+...     ....|.|.+++.+|+|.|+|.+.|..|...+..+.|.|...+.+
T Consensus       149 ~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          149 HYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL  206 (218)
T ss_dssp             EEEEEETTEECTTC-----CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred             eEEEEECCEECCCC-----CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence            99999998776543     34579999999999999999999988876677888888765443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.91  E-value=4.6e-24  Score=172.22  Aligned_cols=174  Identities=21%  Similarity=0.303  Sum_probs=131.3

Q ss_pred             CceEEeecCceEEEEEEecccC----CCeEEEEeCCCc----------------ccc-----cCceeE-------eccEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP----APTISWRRDNSA----------------ALS-----TGGSIY-------RGNIL  237 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~----------------~~~-----~~~~~~-------~~~~l  237 (384)
                      +....+.+|+++.|.|.+.+.+    .+.+.|++.+..                ...     ..+...       ....|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            4556789999999999998765    468999984321                110     111111       23579


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecC
Q psy16652        238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMN  316 (384)
Q Consensus       238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~  316 (384)
                      .|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++.....
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~  165 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM  165 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred             EEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence            999999999999999999987754 77788999888876554444557889999999999 8999999999995432221


Q ss_pred             CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .....       .......|.|.+++.+|+|.|+|.|.|..|....++.|.|..|
T Consensus       166 ~~~~~-------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          166 PTPWL-------AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CGGGG-------GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             Cccce-------eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            11111       1113568999999999999999999999999999999998743

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.91  E-value=9.2e-24  Score=170.21  Aligned_cols=182  Identities=13%  Similarity=0.092  Sum_probs=126.9

Q ss_pred             CceEEeecC--ceEEEEEEecccCCCeEEEEeC---CCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652        190 TRSVIVSEG--QTVYLYCYANGFPAPTISWRRD---NSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       190 ~~~~~~~~g--~~~~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      +..+.+.+|  +++.|.|.+.+ |.+.+.|++.   +..+....... .....|.|.+++.+|+|.|+|.+.|..+...+
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s   92 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS   92 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence            356788999  99999999977 6789999885   43333322222 23468999999999999999999985444334


Q ss_pred             eEEEEEEEe--cCeEEecCCCc-ccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCc-eeeeeeecc--Cccccce
Q psy16652        264 RNIAVEVEF--APVITINRPRQ-GQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQH-YSVSHFATS--DEFSDTS  335 (384)
Q Consensus       264 ~~~~l~v~~--~p~~~~~~~~~-~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~  335 (384)
                      ..+.|.|..  +|.+...+... .+.+|+.++|.|.+.|.|.  +.+.|+++|..+..... .........  .....++
T Consensus        93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (213)
T 2x1w_L           93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST  172 (213)
T ss_dssp             CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEE
T ss_pred             EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEE
Confidence            446666643  34454544443 7899999999999998654  47999999876432211 000000000  0123457


Q ss_pred             EEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        336 LRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       336 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|.+++.+|+|.|+|.|.|..|....++.|.|.++|
T Consensus       173 L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             EEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            9999999999999999999999999999999998765

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.91  E-value=4.9e-24  Score=169.40  Aligned_cols=177  Identities=16%  Similarity=0.299  Sum_probs=121.2

Q ss_pred             ceeeeccCcEEEEEEe---ecCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEEEEEeecCC
Q psy16652         81 EQIKDIAQTADLKCSV---QYADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+.+..|++++|.|..   .+.|.+.|.|+|++........ .........    ...++.+..  ..+...|.|.+++.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~   78 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLI-GRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANI   78 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEE-EEEETTEEEECGGGBTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEE-EecCCceEEeeccccceEEEEE--cCCEEEEEEccCCH
Confidence            4568999999999964   4567889999998765321111 111111111    223444444  45677899999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc----Cc
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST----GG  229 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~----~~  229 (384)
                      +|+|.|+|.+.|. .+..+..+.|.|..||.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...    .+
T Consensus        79 ~D~G~Y~C~a~n~-~g~~~~~~~l~V~~p~~~~~-~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r  156 (203)
T 4fa8_A           79 SHDGNYLCRMKLG-ETEVTKQEHLSVVKPLTLSV-HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG  156 (203)
T ss_dssp             GGCEEEEEEEEET-TEEEEEEEEEEEEEEEEEEE-EEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------C
T ss_pred             HHCeEEEEEEEcC-CCcEEEEEEEEecCCceeee-cceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce
Confidence            9999999999864 45567778888887766543 244556789999999999999999999999876544321    11


Q ss_pred             e-eEecc---EEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652        230 S-IYRGN---ILKIPNITKTDRGTYYCVAQNGVGRGM  262 (384)
Q Consensus       230 ~-~~~~~---~l~i~~~~~~d~G~Y~C~~~~~~~~~~  262 (384)
                      . ...++   .+.+.+++.+|+|.|+|.|.|..|...
T Consensus       157 ~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          157 VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             CEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             EEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            1 12233   345568999999999999999998763

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.3e-23  Score=163.79  Aligned_cols=182  Identities=26%  Similarity=0.451  Sum_probs=135.3

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.+...+.+..+.+|+++.|.|.+.+.+.+.+.|++++.....            ....++.+..+     ..|.|.++
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~-----~~L~i~~~   64 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------------ISDNRFAMLAN-----NNLQILNI   64 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CB------------CCCTTEEECTT-----SCEEETTC
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCcccee------------ccCCeEEEecC-----CCEEEeeC
Confidence            56778888888999999999999998888889999998764210            12344444332     25999999


Q ss_pred             CCCCCeeEEEEEEEccCcc-eeeeEEEEEecCCccccCCCc-eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652        152 QETDAGIYKCEVIISLNNK-VSAEVELIVRRPPIISDNSTR-SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      +.+|+|.|+|.+.+...+. ....+.+.+..+|.+...... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        65 ~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~  144 (189)
T 2v5t_A           65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK  144 (189)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSS
T ss_pred             CHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCc
Confidence            9999999999998766443 345566777766655433222 45678899999999999889999999999987765544


Q ss_pred             eeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        230 SIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       230 ~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      ....  +..|.|.++..+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus       145 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  187 (189)
T 2v5t_A          145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVF  187 (189)
T ss_dssp             EEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce-eEEEEEEEE
Confidence            3332  4589999999999999999999988875 556666654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.91  E-value=1.1e-23  Score=169.36  Aligned_cols=192  Identities=19%  Similarity=0.234  Sum_probs=136.1

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccc-eeccCceeee----CCceEEeeCCCCceEEEEEee
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLP-ISMSGSLIIH----DSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+.+.+..+.+|++++|.|...+.+...+.|++++.......+. +.........    .+|+.+..     +.+|.|.+
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-----~~~L~i~~   77 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-----NGSLLFQM   77 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-----TSCEEECS
T ss_pred             cccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-----CCeEEEcc
Confidence            44556677899999999999777778899999876533222211 1111111111    23444432     23699999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc---cccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI---ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~  227 (384)
                      ++.+|+|.|+|.+.+...+.....+.|.|..++.   +... ...  +.+|+.+.|.|.+.+.| +.+.|++++..+...
T Consensus        78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~  153 (208)
T 3r4d_A           78 ITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT-NTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT  153 (208)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEES-CSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC
T ss_pred             ccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecC-Cce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC
Confidence            9999999999999876556677778888876532   2221 122  78999999999998865 799999998877655


Q ss_pred             CceeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        228 GGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       228 ~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                      ......  +..|.|.++..+|+|.|+|.|.|..|...+..+.|.|..+|..
T Consensus       154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            443332  3689999999999999999999999998888899888877654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.91  E-value=1.8e-23  Score=166.67  Aligned_cols=177  Identities=18%  Similarity=0.214  Sum_probs=124.8

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++....... .....  ....|.|.+++.+|+|.|+|.+.|..+.. +..+.|.
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~l~   87 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVE   87 (202)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEE
T ss_pred             cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE-eeEEEEE
Confidence            34456999999999999999999999984322111 11111  23469999999999999999999987654 6788899


Q ss_pred             EEecCeE-EecCCCcccccCCcEEEEEEEeccCC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        270 VEFAPVI-TINRPRQGQALQYDAILECHVEAYPP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       270 v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |..+|.. .+.+. ..+.+|+.++|.|.+.+.++   ++|.|++++..+....... .............|.|.....+|
T Consensus        88 V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~-~~~~~~~~~~~~~l~i~~~~~d~  165 (202)
T 1vca_A           88 IYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE-DADRKSLETKSLEVTFTPVIEDI  165 (202)
T ss_dssp             EEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS-CCSSCCCEEEEEEEEECCCGGGT
T ss_pred             EEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccc-ccCcCcceEEEEEEEEEeeeccC
Confidence            9887643 22223 66889999999999988543   3799999998875321100 00000001123456788888889


Q ss_pred             CeEEEEEEEeCCcc-------eEEEEEEEEeeee
Q psy16652        346 FGQYACKAANKYGS-------AQKEIELFDRETQ  372 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~-------~~~~~~l~v~~~~  372 (384)
                      .|.|+|.|.|..|.       .+.++.|.|.-+|
T Consensus       166 ~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          166 GKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             TCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             CCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            99999999999886       3567777777655

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.91  E-value=1.2e-23  Score=169.83  Aligned_cols=195  Identities=17%  Similarity=0.262  Sum_probs=136.6

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCC-c-ccceeccCcee-----eeCCceEEee-CCCCce
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKM-E-PLPISMSGSLI-----IHDSRFQLTT-DPETST  143 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~-~-~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~  143 (384)
                      ..++..+.+.+|++++|.|.+.+.+    .+.+.|++.+..... . .+.....+...     ...+|+.+.. +...+.
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            3445667789999999999998765    469999997654311 1 12222222211     1245666644 223456


Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCC
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS  222 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~  222 (384)
                      .+|.|.+++.+|+|.|+|.+.+.. +..+..+.|.|..+|..... .....+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~  161 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAP-GVANKKFLLTVLVKPSGTRC-FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD  161 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCBSCEE-EEESCCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred             ccEEEccCChhhCeEEEEEEEeCC-CccccEEEEEEEcCCCCcee-eeecceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence            789999999999999999998653 44577788999887765432 222237889999999999 789999999999644


Q ss_pred             c--ccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec
Q psy16652        223 A--ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA  273 (384)
Q Consensus       223 ~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  273 (384)
                      .  +.........+..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus       162 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~P  213 (214)
T 3jz7_A          162 SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVVPP  213 (214)
T ss_dssp             TCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCBCC
T ss_pred             CCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEeCC
Confidence            3  22222222345689999999999999999999998876 66777776643

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.91  E-value=1.8e-23  Score=166.95  Aligned_cols=171  Identities=15%  Similarity=0.241  Sum_probs=130.3

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ..+|.+...+....+.+|++++|.|.+.+.+.+ .+.|++++....                          .....|.|
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~--------------------------~~~~~L~i   58 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS--------------------------SQASSYFI   58 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEES--------------------------CCSSEEEE
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcc--------------------------cCccEEEE
Confidence            456788888888889999999999999887654 499999765310                          00147999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CCCeEEEEeCCCccccc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALST  227 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~  227 (384)
                      .+++.+|+|.|+|.+.+   ...+..+.|.|..++.+...  ....+.+|+.+.|.|.+.+. |.+.+.|++++..+.. 
T Consensus        59 ~~v~~~D~G~Y~C~a~n---~~~s~~~~l~V~~~p~~~~~--~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-  132 (204)
T 3sgj_C           59 DAATVDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-  132 (204)
T ss_dssp             SSCCGGGCEEEEEEETT---SBCCCCEEEEEECSSEEEEC--SCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-
T ss_pred             ecccccCCEEEEEEeCC---CcccccEEEEEecCceEecC--CceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-
Confidence            99999999999999863   34566778888877655433  22567899999999999654 5679999999876532 


Q ss_pred             CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652        228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV  275 (384)
Q Consensus       228 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~  275 (384)
                         ...+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus       133 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          133 ---FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ---ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence               234668999999999999999999996554457778888876553

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.91  E-value=1.7e-23  Score=163.13  Aligned_cols=169  Identities=16%  Similarity=0.256  Sum_probs=129.5

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ...+|.+...+....+.+|++++|.|.+.+.+.+. +.|++++...               .           .....|.
T Consensus         4 ~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~---------------~-----------~~~~~L~   57 (175)
T 1fnl_A            4 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI---------------S-----------SQASSYF   57 (175)
T ss_dssp             CCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEE---------------E-----------SSCSEEE
T ss_pred             CCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEc---------------c-----------CCceEEE
Confidence            34678888888888999999999999998866544 8899976431               0           1233799


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccc
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALS  226 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~  226 (384)
                      |.+++.+|+|.|+|.+.+   ...+..+.|.|..++.....  ....+.+|+.+.|.|.+.+.++ +.+.|++++..+..
T Consensus        58 i~~~~~~d~G~Y~C~~~n---~~~s~~~~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~  132 (175)
T 1fnl_A           58 IDAATVNDSGEYRCQTNL---STLSDPVQLEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY  132 (175)
T ss_dssp             ESSCCGGGCEEEEEECSS---SCCCCCEEEEEECSSEEEEC--SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE
T ss_pred             EeCCCcccCEEEEEEeeC---CcccccEEEEEeCCCceeeC--CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC
Confidence            999999999999999864   23356677877755443322  3355789999999999987655 49999999876532


Q ss_pred             cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       227 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                          ...+..|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..
T Consensus       133 ----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          133 ----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             ----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ----CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence                235678999999999999999999997665556677777754

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.91  E-value=1.6e-23  Score=163.31  Aligned_cols=158  Identities=16%  Similarity=0.236  Sum_probs=125.1

Q ss_pred             ceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ....+.+|+++.|.|.+.+.|.+. +.|++++..+..      ....|.|.+++.+|+|.|+|.+.|..+   +..+.|.
T Consensus        15 ~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~   85 (175)
T 1fnl_A           15 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLE   85 (175)
T ss_dssp             CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEE
T ss_pred             CceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEE
Confidence            334688999999999998887765 889998876542      356899999999999999999998543   4557777


Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      |..++.... .+...+.+|+.+.|.|.+.+.|++ .+.|+++|..+...             .....|.|.+++.+|+|.
T Consensus        86 V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-------------~~~~~L~i~~v~~~d~G~  151 (175)
T 1fnl_A           86 VHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------------HHNSDFHIPKATLKDSGS  151 (175)
T ss_dssp             EECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------------EECCCEEESSCCGGGCEE
T ss_pred             EeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-------------CCCCEEEEcccChhhCeE
Confidence            776665443 344667899999999999987665 99999999887321             136789999999999999


Q ss_pred             EEEEEEeCCcc-eEEEEEEEEeee
Q psy16652        349 YACKAANKYGS-AQKEIELFDRET  371 (384)
Q Consensus       349 Y~C~a~n~~g~-~~~~~~l~v~~~  371 (384)
                      |+|.|.|..|. .+..+.|.|.++
T Consensus       152 Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          152 YFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EEEEEEETTEEEECCCEEEEEECC
T ss_pred             EEEEEEcCCCCccCccEEEEEeCC
Confidence            99999997664 455677877653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=5.7e-23  Score=165.53  Aligned_cols=191  Identities=19%  Similarity=0.263  Sum_probs=137.4

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +.+...+....+.+|+++.|.|.+.+.+.+.+.|++++....  ...............++.+..      ..|.|.+++
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~   73 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTT--ALVCYNSQITAPYADRVTFSS------SGITFSSVT   73 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEE--EEEEETTEECGGGTTTEEEET------TEEEESCCC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCcee--eEEecCCcccccccCcEEeec------eeEEEcccC
Confidence            356666777889999999999999988888999999886520  000000000011234444433      479999999


Q ss_pred             CCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEE-ecccCCCeEEEEeCCC-cccccCc
Q psy16652        153 ETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNS-AALSTGG  229 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~-~~~~~~~  229 (384)
                      .+|+|.|+|.+.+..+. ..+..+.|.|..+|..... .....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....
T Consensus        74 ~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~  152 (212)
T 1f97_A           74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI-SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK  152 (212)
T ss_dssp             GGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEE-ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred             cccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCccc-CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence            99999999999876542 4466788888877765433 22345789999999999 6889999999999998 6654322


Q ss_pred             e---------e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEe
Q psy16652        230 S---------I--YRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEF  272 (384)
Q Consensus       230 ~---------~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~  272 (384)
                      .         .  .....|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             -CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            1         1  135689999999999999999999998876 45566666653

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=1.7e-23  Score=163.42  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=124.9

Q ss_pred             CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +....+.+|+++.|.|.+.+.+.+ .+.|++++..+..      .+..|.|.+++.+|+|.|+|.+.+..+   +..+.|
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l   81 (176)
T 1f2q_A           11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYL   81 (176)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC---CCCEEE
T ss_pred             CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCccc---cccEEE
Confidence            344568999999999999887775 6999998876543      356899999999999999999987543   445677


Q ss_pred             EEEecCeEEecCCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652        269 EVEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       269 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      .|..++.+.. .+...+.+|+.+.|.|.+. +.|.+.+.|+++|..+....             ....|.|.+++.+|+|
T Consensus        82 ~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~~L~i~~v~~~d~G  147 (176)
T 1f2q_A           82 EVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------ENHNISITNATVEDSG  147 (176)
T ss_dssp             EEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------CSSEEEESSCCGGGCE
T ss_pred             EEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------------CCCeEEECCCCcccCE
Confidence            7775555443 3445678999999999995 56667999999998884322             3678999999999999


Q ss_pred             EEEEEEEeCCcc-eEEEEEEEEeeeec
Q psy16652        348 QYACKAANKYGS-AQKEIELFDRETQT  373 (384)
Q Consensus       348 ~Y~C~a~n~~g~-~~~~~~l~v~~~~~  373 (384)
                      .|+|.|.|..+. .+..+.|.|..+|.
T Consensus       148 ~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          148 TYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEEEeCCcceEecCEEEEEecCCC
Confidence            999999997544 45568888887764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.90  E-value=1.3e-23  Score=174.90  Aligned_cols=264  Identities=11%  Similarity=0.077  Sum_probs=113.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +.+.|+...|.+|+++.|+|.+.-..+..+.|...-...                  .   ..........+.|.+++.+
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~------------------~---~~~~g~~~~~~~l~~v~~~   60 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK------------------E---LLLPGNNRKVYELSNVQED   60 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC------------------C---CCCSCSSEEEEEEESCCSC
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc------------------c---cccCCCceEEEEEEecccC
Confidence            445677788999999999999864444458886421110                  0   0000122235788888743


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI  231 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~  231 (384)
                        |.|+|++. ..+...+..+.|.|..+|...........+.+|+.++|.|.+.+ .|..  .|+|++++..+.......
T Consensus        61 --~~y~C~~~-~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~  137 (291)
T 1mq8_A           61 --SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG  137 (291)
T ss_dssp             --CCCEEEEE-CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCB
T ss_pred             --CeEEEEEE-cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCC
Confidence              57999995 44456777888999988866654444445889999999999966 4544  589999997664332110


Q ss_pred             -EeccEEEEcCCCCCCCeEEEEEEEeCCCC-------ceeeEEEEEEEecCeEEec-CCCcccccCCcEEEEEEEeccCC
Q psy16652        232 -YRGNILKIPNITKTDRGTYYCVAQNGVGR-------GMKRNIAVEVEFAPVITIN-RPRQGQALQYDAILECHVEAYPP  302 (384)
Q Consensus       232 -~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-------~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~  302 (384)
                       ....+|.+...+.+|.+.|+|.|.+..+.       ..+....|.|.++|..... .....+.+|+.++|.|.+.|.|+
T Consensus       138 ~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P  217 (291)
T 1mq8_A          138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP  217 (291)
T ss_dssp             TTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------
T ss_pred             CCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCC
Confidence             12245777667777777999999986542       1255678888887632111 11225778999999999999765


Q ss_pred             C---eEEEEECCEEecCCCceeeeeeeccCccccceEEEeec---CCCC--CeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        303 P---AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI---ERRQ--FGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       303 ~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d--~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +   .+.|+++|+.+......           ....+++...   ..++  .+.|+|.|.|...+.++...|.|...|+
T Consensus       218 ~~~~~v~w~~~g~~l~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~  285 (291)
T 1mq8_A          218 VSEAQVHLALGDQRLNPTVTY-----------GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (291)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CcccEEEEEECCEecCceeee-----------cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence            5   59999999988643211           1222332222   3333  5678899998776677888888887654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.90  E-value=4.6e-23  Score=162.21  Aligned_cols=160  Identities=18%  Similarity=0.215  Sum_probs=125.9

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------CceeEe-------ccEEEEcCCCCCCCeE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSIYR-------GNILKIPNITKTDRGT  249 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~~~-------~~~l~i~~~~~~d~G~  249 (384)
                      ..+.+.+|+++.|.|.+.+.|.+.+.|++++......              .+....       ...|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            3467899999999999988888999999987632110              011111       3359999999999999


Q ss_pred             EEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccC
Q psy16652        250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD  329 (384)
Q Consensus       250 Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  329 (384)
                      |+|.+.+..+     .+.|.|..   +.. ++...+.+|+.++|.|.+.+.|.+.+.|++++..+.              
T Consensus        83 Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------------  139 (184)
T 2ny1_B           83 YICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------------  139 (184)
T ss_dssp             EEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE--------------
T ss_pred             EEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc--------------
Confidence            9999987532     45566653   222 444577899999999999999999999999875541              


Q ss_pred             ccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652        330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG  374 (384)
Q Consensus       330 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  374 (384)
                       .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.|..
T Consensus       140 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          140 -QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             -EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred             -cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence             14678999999999999999999999999999999999988754

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=164.05  Aligned_cols=169  Identities=15%  Similarity=0.212  Sum_probs=125.3

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee---EeccEEEEcCCCCCCCeEEEEEEEeCCC-CceeeEEEEE
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNILKIPNITKTDRGTYYCVAQNGVG-RGMKRNIAVE  269 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~  269 (384)
                      .+.+|++++|.|.+.+ +.+.+.|++++..+.......   .....|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~   93 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV   93 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence            6889999999999988 678999999988764322111   2346899999999999999999999876 2335667777


Q ss_pred             EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      |..   +|.+...+. ..+.+|+.++|.|.+.+ +++.+.|+++|..+..........    .......|.|.+++.+|+
T Consensus        94 V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A           94 MTGAYSKPTLSALPS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHG----AQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             EECSSCCCEEEEESC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEE----EEEEEEEEEECSCCGGGC
T ss_pred             ecCCCCCCEEEeCCc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeeccccc----ccCcceEEEeCCCcccCC
Confidence            764   456655444 36789999999999988 456899999998765433211111    011356799999999999


Q ss_pred             eEEEEEEEeCCc-----ceEEEEEEEEe
Q psy16652        347 GQYACKAANKYG-----SAQKEIELFDR  369 (384)
Q Consensus       347 G~Y~C~a~n~~g-----~~~~~~~l~v~  369 (384)
                      |.|+|.|.|..+     ..+..+.|.|.
T Consensus       168 G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          168 GTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             CeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            999999999986     23445666664

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.90  E-value=2.4e-23  Score=167.93  Aligned_cols=184  Identities=18%  Similarity=0.221  Sum_probs=128.7

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.+..++ ...+.+|++|+|.|.+.+.+.+.+.|++.........+............+|+.+..  .....+|.|.+++
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~   78 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQ   78 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCC
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCC
Confidence            3455556 778999999999999998888899999965432222222211111112346777665  5567889999999


Q ss_pred             CCCCeeEEEEEEEccC--cceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCcc
Q psy16652        153 ETDAGIYKCEVIISLN--NKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSAA  224 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~  224 (384)
                      .+|+|.|+|.+.+..+  ......+.|.|.    .+|.+.... ....+.+|+.+.|.|.+.+. |+ +.+.|++++..+
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (213)
T 3mj8_L           79 AGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFP-PSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI  157 (213)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEEC-CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             hhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccC-CCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence            9999999999987665  245666788887    344333221 12223479999999999874 44 499999998876


Q ss_pred             ccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        225 LST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       225 ~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ...         .........|.|..+..+|+|.|+|.|.|..+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          158 TQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             CCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            532         122223456999999999999999999997643

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.90  E-value=1.1e-22  Score=170.14  Aligned_cols=210  Identities=19%  Similarity=0.283  Sum_probs=131.2

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEee---cCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEE
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQ---YADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYI  145 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  145 (384)
                      +.+...+..+.+.+|++++|.|.+.   +.+.+.+.|++.+.........+........    ..+|+.+..+....+.+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4566667778899999999999987   4566789999977654333222222211111    23556555444556678


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe---cccCCCeEEEEeCC
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA---NGFPAPTISWRRDN  221 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~v~W~~~~  221 (384)
                      |.|.+++.+|+|.|+|.+.+.... .....+.|.|..      ..+....+.+|+.+.|.|.+   .+.|.+.+.|++++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            999999999999999999875433 244556666641      22456778999999999999   66788999999954


Q ss_pred             CcccccC----------------------ce------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE-Ee
Q psy16652        222 SAALSTG----------------------GS------IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EF  272 (384)
Q Consensus       222 ~~~~~~~----------------------~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v-~~  272 (384)
                      .......                      ..      ......|.|.+++.+|+|.|+|.|.|..+.. +..+.|.| ..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~  238 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHVVQD  238 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE-EEEEEEEEEcC
Confidence            3211100                      00      0234589999999999999999999977754 67778877 44


Q ss_pred             cCeEEecCCCcccccCC
Q psy16652        273 APVITINRPRQGQALQY  289 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~  289 (384)
                      +|.+...+....+.+++
T Consensus       239 ~p~~~~~p~~~~~~~~q  255 (268)
T 3mj6_A          239 EFQRTISPTPPTDKGQQ  255 (268)
T ss_dssp             -----------------
T ss_pred             CCeeeeCCCCCCCCcce
Confidence            55555555554444443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=1.8e-23  Score=163.27  Aligned_cols=170  Identities=22%  Similarity=0.280  Sum_probs=128.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+|.+...+....+.+|++++|.|.+.+.+. ..+.|++++....                          .....|.|.
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~--------------------------~~~~~L~i~   56 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------------------------ETNSSLNIV   56 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS--------------------------CCSSEEEEC
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC--------------------------CCceEEEEe
Confidence            5678888888889999999999999987665 4799999765311                          123479999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccC
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTG  228 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~  228 (384)
                      +++.+|+|.|+|.+.+   ...+..+.|.|..++....  .....+.+|+.+.|.|.+. +.|.+.+.|++++..+... 
T Consensus        57 ~v~~~d~G~Y~C~~~~---~~~s~~~~l~V~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-  130 (176)
T 1f2q_A           57 NAKFEDSGEYKCQHQQ---VNESEPVYLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-  130 (176)
T ss_dssp             SCCGGGCEEEEEECTT---SSCCCCEEEEEECSSEEEE--ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-
T ss_pred             ccceecCEEEEEEcCC---ccccccEEEEEeCcceeec--CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-
Confidence            9999999999999863   2235567777775444332  2234678999999999994 5666799999988766322 


Q ss_pred             ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652        229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV  275 (384)
Q Consensus       229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~  275 (384)
                         ..+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus       131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          131 ---YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             ---CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             ---cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence               24568999999999999999999997555556778888888774

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.90  E-value=7.5e-23  Score=165.02  Aligned_cols=177  Identities=21%  Similarity=0.316  Sum_probs=125.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeEe----ccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIYR----GNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~----~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++.....              ..+....    ...|.|.+++.+|+|.|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            4567789999999999999988889999985431110              0111111    238999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeee--
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSH--  324 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~--  324 (384)
                      |.+.+..+........|.|..   +|.+...++......|+.+.|.|.+.| .|.+ .+.|+++|..+..........  
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  167 (213)
T 3d9a_L           88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD  167 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCC
T ss_pred             EeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCcc
Confidence            999987665433445666664   777777565555568899999999987 6665 899999999887551111111  


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      ...+.....+.|.|.+++.+|.|.|+|.|.|..........+
T Consensus       168 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          168 SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             CCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            111111124589999999999999999999998775444444

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.90  E-value=8.1e-23  Score=164.83  Aligned_cols=175  Identities=19%  Similarity=0.329  Sum_probs=129.2

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------ccCcee----EeccEEEEcCCCCCCCeEEEEE
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------STGGSI----YRGNILKIPNITKTDRGTYYCV  253 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~  253 (384)
                      ...+.+|+++.|.|.+.+.+.+.+.|++..  ....            ...+..    .....|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            677899999999999998888999999832  1111            001111    1234799999999999999999


Q ss_pred             EEeCCCC--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceeeeee
Q psy16652        254 AQNGVGR--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSVSHF  325 (384)
Q Consensus       254 ~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~  325 (384)
                      +.+..+.  .....+.|.|.    .+|.+...+....+..|+.++|.|.+.+. |+ +.+.|+++|..+...........
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  168 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK  168 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc
Confidence            9998772  33556778887    77888777766666789999999999985 44 39999999999865422111111


Q ss_pred             eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       326 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      ..+.....+.|.|..+..+|.|.|+|.|.|..+...+++.+
T Consensus       169 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          169 SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence            11112234569999999999999999999999887777643

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.90  E-value=8.5e-23  Score=160.52  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=115.9

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEEEEe
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEF  272 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~  272 (384)
                      .+.+|+++.|.|.+.+ +.+.+.|++++..      ....+..|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence            6889999999999987 7789999998875      2335678999999999999999999997653 224556777743


Q ss_pred             ---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 ---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                         +|.+...+ ...+.+|+.++|.|.+.+. ++.+.|+++|..+......         ......|.|.+++.+|+|.|
T Consensus        91 ~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~---------~~~~~~L~i~~v~~~D~G~Y  159 (184)
T 2gi7_A           91 VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPE---------RWYRASFPIITVTAAHSGTY  159 (184)
T ss_dssp             SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCC---------EEEEESSSEEEETTCCSEEE
T ss_pred             cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecC---------CCceEEEEEccCCccCCeEE
Confidence               56666554 4567899999999998765 4699999999877542211         11356789999999999999


Q ss_pred             EEEEEeCCc
Q psy16652        350 ACKAANKYG  358 (384)
Q Consensus       350 ~C~a~n~~g  358 (384)
                      +|.|.|..+
T Consensus       160 ~C~a~n~~~  168 (184)
T 2gi7_A          160 RCYSFSSRD  168 (184)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999999865

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=162.90  Aligned_cols=170  Identities=23%  Similarity=0.314  Sum_probs=126.2

Q ss_pred             eccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         85 DIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      -+|+.+.|.|.+.+. +.+.+.|++++...              ....++.+..  ......|.|.+++.+|+|.|+|.+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~~   78 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAI--------------RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMEL   78 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEEC--------------CCCSSEEEEE--ETTEEEEEEESCCGGGCEEEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEc--------------cCCCeEEEEE--eCCEEEEEECCCCcccCEEEEEEE
Confidence            467788888888774 57899999987542              2234555544  344667999999999999999999


Q ss_pred             EEccCcceeeeEEEEEec--------------------CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCc
Q psy16652        164 IISLNNKVSAEVELIVRR--------------------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA  223 (384)
Q Consensus       164 ~~~~~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~  223 (384)
                      .+.. +.....+.|.+..                    .|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        79 ~n~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~  157 (212)
T 2r15_A           79 FDGK-TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA  157 (212)
T ss_dssp             ECSS-CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE
T ss_pred             ecCC-cceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE
Confidence            8643 3344455554431                    222332335567889999999999999999999999999987


Q ss_pred             ccccCceeEec-----cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        224 ALSTGGSIYRG-----NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       224 ~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      +..........     ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  210 (212)
T 2r15_A          158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFI  210 (212)
T ss_dssp             ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE-EEEEEEEEEc
Confidence            76655443332     389999999999999999999998875 6677777753

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=164.50  Aligned_cols=159  Identities=13%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEE
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVE  269 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~  269 (384)
                      .+.+|+++.|.|.+.+.+. .+.|++++..+.....   ....+..|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~   93 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV   93 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence            6889999999999988655 9999999876643211   11234689999999999999999999876532 24567788


Q ss_pred             EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      |..   +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+........   ..........|.|.+++.+|+
T Consensus        94 V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~  168 (196)
T 2d3v_A           94 VTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ---LTPSGQFQALFPVGPVTPSHR  168 (196)
T ss_dssp             EECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECE---ECTTSCEEEEEECCCCBTTBC
T ss_pred             ecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc---cccCCCceeEEEeeecCcccC
Confidence            876   46665443 35688999999999999988 89999999987642211100   001111347899999999999


Q ss_pred             eEEEEEEEeCCc
Q psy16652        347 GQYACKAANKYG  358 (384)
Q Consensus       347 G~Y~C~a~n~~g  358 (384)
                      |.|+|.|.|..+
T Consensus       169 G~Y~C~a~n~~~  180 (196)
T 2d3v_A          169 WMLRCYGSRRHI  180 (196)
T ss_dssp             EEEEEEEEETTE
T ss_pred             eeEEEEEEccCC
Confidence            999999999875

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.90  E-value=9.3e-23  Score=162.40  Aligned_cols=170  Identities=17%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCC-CC-ceeeEEEE
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGV-GR-GMKRNIAV  268 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l  268 (384)
                      .+.+|++++|.|.+.+.+. .+.|++++..+.....   .......|.|.+++.+|+|.|+|.+.|.. +. ..+..+.|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l   93 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL   93 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred             cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEE
Confidence            6889999999999988665 7999999886642211   12245689999999999999999999976 42 23566788


Q ss_pred             EEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        269 EVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       269 ~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      .|..   +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+........ .  .........|.|.+++.+|
T Consensus        94 ~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~-~--~~~~~~~~~L~i~~v~~~D  168 (198)
T 1ugn_A           94 VVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQ-P--HARGSSRAIFSVGPVSPSR  168 (198)
T ss_dssp             EEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC---------CCEEEEEECCCCTTS
T ss_pred             EEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccc-c--cCCCcceeEEEecccCccc
Confidence            8877   45665443 3578899999999999987 789999999987743321100 0  0011124789999999999


Q ss_pred             CeEEEEEEEeCCcc-----eEEEEEEEEe
Q psy16652        346 FGQYACKAANKYGS-----AQKEIELFDR  369 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~-----~~~~~~l~v~  369 (384)
                      +|.|+|.|.|..+.     .+..+.|.|.
T Consensus       169 ~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          169 RWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             CEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             CeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            99999999998762     2455667665

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.90  E-value=6.6e-23  Score=165.32  Aligned_cols=171  Identities=15%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---eEecc--EEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---IYRGN--ILKIPNITKTDRGTYYCVAQNGVGRG-MKRNI  266 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~  266 (384)
                      ..+.+|++++|.|.+.+ +.+.+.|+|++..+......   .....  .|.|.+++.+|+|.|+|.+.|..+.. .+..+
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~   96 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL   96 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCE
Confidence            36889999999999977 67799999998765432221   12334  89999999999999999999976522 24557


Q ss_pred             EEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC
Q psy16652        267 AVEVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       267 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .|.|..   +|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+++|..+... . ..       ......|.|.+++.
T Consensus        97 ~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~-~~-------~~~~~~L~I~~v~~  166 (218)
T 1uct_A           97 ELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-H-QS-------GEHPANFSLGPVDL  166 (218)
T ss_dssp             EEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-E-EE-------CSSSEEEECCSCCG
T ss_pred             EEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-c-cC-------CCccCEEEEccCCc
Confidence            777765   56665544 457789999999997777788899999999876531 1 10       11467899999999


Q ss_pred             CCCeEEEEEEEeCCc-----ceEEEEEEEEeeeecC
Q psy16652        344 RQFGQYACKAANKYG-----SAQKEIELFDRETQTG  374 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~  374 (384)
                      +|+|.|+|.|.|...     ..+..+.|.|.+..+.
T Consensus       167 ~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~~  202 (218)
T 1uct_A          167 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQ  202 (218)
T ss_dssp             GGCEEEEEEEECTTSTTEECCCCCCEEEEEC-----
T ss_pred             ccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCCc
Confidence            999999999998642     3345688888887543

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.90  E-value=3.1e-22  Score=159.12  Aligned_cols=179  Identities=17%  Similarity=0.250  Sum_probs=128.1

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+.. .+.+|++|+|.|.+.+ +...+.|+|++......                 ............|.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----------------~~~~~~~~~~~~L~i~   63 (196)
T 3p2t_A            3 LPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD-----------------RQNPLEPKNKARFSIP   63 (196)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE-----------------EECCCSSSSEEEEEES
T ss_pred             CCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc-----------------ccccccCCceEEEEec
Confidence            357788888777 8899999999999887 66789999987652110                 0000012345689999


Q ss_pred             ecCCCCCeeEEEEEEEccC-cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccc
Q psy16652        150 EIQETDAGIYKCEVIISLN-NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL  225 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~  225 (384)
                      +++.+|+|.|+|.+.+..+ ...+..+.|.|...   |.+... +. ..+.+|+.++|.|.+.+ +++.+.|++++..+.
T Consensus        64 ~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~-~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  140 (196)
T 3p2t_A           64 SMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSAL-PS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHP  140 (196)
T ss_dssp             SCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEE-SC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCG
T ss_pred             cCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeC-Cc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCccc
Confidence            9999999999999987665 34566778888643   333221 22 25789999999999977 446899999987664


Q ss_pred             ccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCC----CceeeEEEEEE
Q psy16652        226 STGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMKRNIAVEV  270 (384)
Q Consensus       226 ~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v  270 (384)
                      .....     ......|.|.+++.+|+|.|+|.|.|..+    ...+..+.|.|
T Consensus       141 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          141 LLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             GGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             ceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence            43221     22456899999999999999999999765    22344555554

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.90  E-value=8e-23  Score=167.73  Aligned_cols=189  Identities=15%  Similarity=0.223  Sum_probs=128.6

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ....+.+...+....+.+|++++|.|.+.+.+...+.|++.+.......+.............|+.+..  .....+|.|
T Consensus        21 ~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I   98 (237)
T 3sob_L           21 AYADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTI   98 (237)
T ss_dssp             ---CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred             cCccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEE
Confidence            334556777788889999999999999988888899999976432222222211111122356777764  456788999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cC-CCeEEEEeCCCc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTISWRRDNSA  223 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v~W~~~~~~  223 (384)
                      .+++.+|+|.|+|.+.+..+........|.|..   +|.+... +....+.+|+.+.|.|.+.+ .| .+.+.|++++..
T Consensus        99 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~  177 (237)
T 3sob_L           99 SSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIF-PPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  177 (237)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEE-CCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEe-CCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence            999999999999999755443344555676643   2322211 11112335889999999977 45 579999999877


Q ss_pred             cccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        224 ALST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       224 ~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +...           .+.......|.|.....+|+|.|+|.|.|....
T Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            6532           112223456889999999999999999997654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.89  E-value=1.3e-22  Score=165.11  Aligned_cols=175  Identities=17%  Similarity=0.201  Sum_probs=116.3

Q ss_pred             ceEEeecCceEEEEEEecccCCC---eEEEEeCCCcccc-----------c------Ccee-------EeccEEEEcCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALS-----------T------GGSI-------YRGNILKIPNIT  243 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~-----------~------~~~~-------~~~~~l~i~~~~  243 (384)
                      ..+.+.+|+++.|.|.+.+.+.+   .|.|++++.....           .      .+..       .....|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            44678899999999998765443   6999997643210           0      0000       013479999999


Q ss_pred             CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceee
Q psy16652        244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSV  322 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~  322 (384)
                      .+|+|.|+|.|.|..+.. .  ..+.+...+..........+..|+.+.|.|.+.| .|.|.+.|++++..+........
T Consensus        92 ~~D~G~Y~C~a~n~~~~~-~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYE-K--ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEEE-E--EEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             hHHCeeEEEEEECCCcEE-E--EEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            999999999999976643 3  3444444443333334456778999999999988 59999999997654433332222


Q ss_pred             eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       323 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .....   .....+.+..++.+|.|.|+|.|+|..|..++++.|.|.++
T Consensus       169 ~~~~~---g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          169 VADGV---GLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EECTT---SCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EECCC---CcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            21110   01223445667889999999999999999999999988654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.89  E-value=2.8e-22  Score=159.28  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=112.2

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+. ..+.+|++|+|.|.+.+.+. .+.|+|++......           ..      ..........|.|.+
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~-----------~~------~~~~~~~~~~L~i~~   64 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWD-----------TQ------NPLEPKNKARFSIPS   64 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSE-----------EE------CCCSSTTEEEEEESS
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcc-----------cc------cccCCccccEEEecc
Confidence            5678888776 47899999999999887655 99999987652110           00      001133456899999


Q ss_pred             cCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652        151 IQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS  226 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~  226 (384)
                      ++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...  ....+.+|+.++|.|.+.+.| +.+.|++++..+..
T Consensus        65 v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~  141 (196)
T 2d3v_A           65 MTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSAL--PSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLS  141 (196)
T ss_dssp             CCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEEC---CCE
T ss_pred             CChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEcc--CCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccc
Confidence            9999999999999865442 335667788876   3443322  224688999999999999877 89999999987643


Q ss_pred             cCce--e----EeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        227 TGGS--I----YRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       227 ~~~~--~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ....  .    .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       142 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          142 WTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            2111  1    1236899999999999999999998643

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.89  E-value=2e-22  Score=162.46  Aligned_cols=184  Identities=16%  Similarity=0.237  Sum_probs=127.5

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE--EE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY--IL  146 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L  146 (384)
                      ...+|.|...+. ..+.+|++|+|.|.+.+ +...+.|+|++.....              ..+ ....  .....  .|
T Consensus         6 ~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~--------------~~~-~~~~--~~~~~~~~L   66 (218)
T 1uct_A            6 DFPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYR--------------EIG-RRLK--FWNETDPEF   66 (218)
T ss_dssp             GSCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEE--------------ECS-EECC------CCCEE
T ss_pred             CCCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccc--------------ccc-ccCC--CCcceeeEE
Confidence            456788888776 57899999999999876 5678999998764210              000 0000  11223  79


Q ss_pred             EEeecCCCCCeeEEEEEEEccC-cceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652        147 SIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      .|.+++.+|+|.|+|.+.+..+ ...+..+.|.|..   +|.+... + ...+.+|++++|.|.+.+.+.+.+.|+|++.
T Consensus        67 ~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~-p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~  144 (218)
T 1uct_A           67 VIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD-R-GLVLMPGENISLTCSSAHIPFDRFSLAKEGE  144 (218)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEES-S-CSEECTTCCCEEEEECSSSCCSEEEEEETTC
T ss_pred             EEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeC-C-CCccCCCCCEEEEEeCCCCCCCEEEEEECCC
Confidence            9999999999999999987543 2345667787764   3333322 2 3467899999999977666778999999988


Q ss_pred             cccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC----CceeeEEEEEEEec
Q psy16652        223 AALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMKRNIAVEVEFA  273 (384)
Q Consensus       223 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~  273 (384)
                      .+............|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|...
T Consensus       145 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          145 LSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             SSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             cccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            6654211122356899999999999999999998532    12355667766654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.89  E-value=4.3e-22  Score=160.99  Aligned_cols=191  Identities=19%  Similarity=0.266  Sum_probs=133.0

Q ss_pred             CcceeeeccCcEEEEEEeecCCCc---cEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCC-CCceEEEEEee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDY---PVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDP-ETSTYILSIKE  150 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~L~i~~  150 (384)
                      +..+.+.+|++++|.|.+.+.+..   .|.|+|++..................    ...|+.+.... ...+.+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            456678999999999999876543   58999988765433333222222111    22344433321 34566899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS  230 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~  230 (384)
                      ++.+|+|.|+|.+.+...........+.+..++...........+..|+.+.+.|.+.+.|+|.+.|++++..+......
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~  165 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF  165 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence            99999999999998766655555555555555443333345566788999999999999999999999998776543322


Q ss_pred             e-----EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        231 I-----YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       231 ~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      .     ...+.|.|.++..+|+|.|+|.|.|..+.. ...+.+.|
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v  209 (218)
T 4frw_A          166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHIL  209 (218)
T ss_dssp             ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred             ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence            1     224579999999999999999999988765 34444443

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.89  E-value=1.4e-22  Score=167.72  Aligned_cols=179  Identities=16%  Similarity=0.209  Sum_probs=126.5

Q ss_pred             CceEEeecCceEEEEEEecc---cCCCeEEEEeCCCccc-----------------------------ccC-ceeEe---
Q psy16652        190 TRSVIVSEGQTVYLYCYANG---FPAPTISWRRDNSAAL-----------------------------STG-GSIYR---  233 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~~-----------------------------~~~-~~~~~---  233 (384)
                      +....+.+|+++.|.|.+.+   .+.+.+.|++++....                             ... +....   
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            44677899999999999976   6788999999874421                             000 01111   


Q ss_pred             ccEEEEcCCCCCCCeEEEEEEEeCCCCc----eeeEEEEEEEec---CeEEecC-CCcccccCCcEEEEEEEeccCCCeE
Q psy16652        234 GNILKIPNITKTDRGTYYCVAQNGVGRG----MKRNIAVEVEFA---PVITINR-PRQGQALQYDAILECHVEAYPPPAI  305 (384)
Q Consensus       234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~v  305 (384)
                      ...|.|.+++.+|+|.|+|.+.+..+..    ....+.|.|..+   |.+.... ....+.+|+.+.|.|.+.+.|.|.+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            2479999999999999999999876643    144677887764   3343322 3355677999999999999999999


Q ss_pred             EEEECCEEecCCCceeeeee-----------e---ccCc--cccceEEEeecCCCCCeEEEEEEEe---CCcceEEEEEE
Q psy16652        306 VWIKDGVQIMNNQHYSVSHF-----------A---TSDE--FSDTSLRVITIERRQFGQYACKAAN---KYGSAQKEIEL  366 (384)
Q Consensus       306 ~W~~~~~~~~~~~~~~~~~~-----------~---~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n---~~g~~~~~~~l  366 (384)
                      .|++++..+...........           .   ....  .....|.|.+++.+|+|.|+|.|.|   ..|+...++.|
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            99999987754332110000           0   0000  0236899999999999999999999   55566666666


Q ss_pred             EE
Q psy16652        367 FD  368 (384)
Q Consensus       367 ~v  368 (384)
                      .|
T Consensus       249 ~V  250 (250)
T 2fbo_J          249 KV  250 (250)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.89  E-value=6.3e-23  Score=164.90  Aligned_cols=190  Identities=20%  Similarity=0.260  Sum_probs=137.5

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ++.+...+....+.+|+++.|.|.+.+.+.+.+.|++++....  ...............++.+..      ..|.|.++
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~   75 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTT--RLVCYNNKITASYEDRVTFLP------TGITFKSV   75 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEE--EESEETTEECTTTTTTCEEET------TEEECSCC
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCcee--EEEEecCccCccccCceEeec------cEEEEeeC
Confidence            4566777778889999999999999988888999999876510  000000000011223444332      47999999


Q ss_pred             CCCCCeeEEEEEEEccC-cceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc
Q psy16652        152 QETDAGIYKCEVIISLN-NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      +.+|+|.|+|.+.+..+ ...+..+.|.|..+|...... ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus        76 ~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~  154 (209)
T 1nbq_A           76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN-IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK  154 (209)
T ss_dssp             CTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCC-CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred             CHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcc-cccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccc
Confidence            99999999999987654 234567788888777665443 33458899999999997 8899999999999887654332


Q ss_pred             e-----------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEE
Q psy16652        230 S-----------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEV  270 (384)
Q Consensus       230 ~-----------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v  270 (384)
                      .           ......|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus       155 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             SSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            1           1134689999999999999999999998876 344455554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.89  E-value=5.1e-22  Score=158.27  Aligned_cols=180  Identities=12%  Similarity=0.168  Sum_probs=126.4

Q ss_pred             eeeeCccee-eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         75 ISYISQEQI-KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~-v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      +.+.+.... +.+|++++|.|.+.+.|.+.+.|++.....      +         ..+..  .  ......|.|.+++.
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~------~---------~~~~~--~--~~~~~~L~I~~v~~   63 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSP------L---------NGKVT--N--EGTTSTLTMNPVSF   63 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCC------C---------SSEEE--E--ETTEEEEEESSCCG
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCC------c---------cceEE--E--cCCccEEEECcCCH
Confidence            344455554 459999999999998888889998833210      0         01111  1  12345699999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CC--CeEEEEeCCCcccccCce
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA--PTISWRRDNSAALSTGGS  230 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~  230 (384)
                      +|+|.|+|.+.+.. +..+..+.|.|..+|......+. ..+.+|+.++|.|.+.+. |.  +.+.|++++..+......
T Consensus        64 ~D~G~Y~C~a~n~~-~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~  141 (202)
T 1vca_A           64 GNEHSYLCTATCES-RKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL  141 (202)
T ss_dssp             GGCSEEEEEEEETT-EEEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred             HHCEEEEEEEEECC-ceEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence            99999999998664 45677888999877654322222 457899999999999774 43  379999998765432111


Q ss_pred             --------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc------eeeEEEEEEEecCe
Q psy16652        231 --------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG------MKRNIAVEVEFAPV  275 (384)
Q Consensus       231 --------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~------~~~~~~l~v~~~p~  275 (384)
                              ......|.|.....+|+|.|+|.|.|..+..      ....+.|.|.++|.
T Consensus       142 ~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          142 EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             SCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             cccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence                    1223457788888889999999999977652      35678888988885

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=1.4e-22  Score=165.55  Aligned_cols=191  Identities=19%  Similarity=0.311  Sum_probs=136.4

Q ss_pred             ccCCCCeeeeC----cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652         69 SQRTPTISYIS----QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY  144 (384)
Q Consensus        69 ~~~~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (384)
                      ...+|.+...+    ....+.+|+++.|.|.+.+.+.+.+.|++++.......           .......    .....
T Consensus        12 ~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~~~~~----~~~~~   76 (231)
T 3ojm_B           12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH-----------RIGGYKV----RNQHW   76 (231)
T ss_dssp             -CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGG-----------STTCCEE----EGGGT
T ss_pred             CccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccc-----------cccceee----ecCcc
Confidence            34456665554    66779999999999999988888999999775421110           0001111    12234


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecccCCCeEEEEe-
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR-  219 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-  219 (384)
                      .|.|.+++.+|+|.|+|.+.+.. +.....+.|.|...    |......+....+.+|+.+.|.|.+.+.|.+.+.|++ 
T Consensus        77 ~L~i~~~~~~d~G~Y~C~~~n~~-~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  155 (231)
T 3ojm_B           77 SLIMESVVPSDKGNYTCVVENEY-GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH  155 (231)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEE
T ss_pred             eEEEecCCcccCEEEEEEEeccc-CcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEEC
Confidence            79999999999999999998654 44566677777653    2232233556778999999999999999999999999 


Q ss_pred             ---CCCcccccCcee-----------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        220 ---DNSAALSTGGSI-----------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       220 ---~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                         ++..+.......           .....|.|.++..+|+|.|+|.+.|..|.. +..+.|.|..+|..
T Consensus       156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          156 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWLTVLPKQQA  225 (231)
T ss_dssp             CCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCC--
T ss_pred             CCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEEEEecCCCC
Confidence               665543332211           123579999999999999999999998876 77888888877753

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=166.62  Aligned_cols=190  Identities=19%  Similarity=0.295  Sum_probs=131.8

Q ss_pred             CCCCeeee----CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         71 RTPTISYI----SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        71 ~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      .+|.+..+    +....+.+|+++.|.|.+.+.+.+.+.|++++.......           .......    ......|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~~~~~----~~~~~~L   74 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH-----------RIGGIKL----RHQQWSL   74 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGG-----------STTCCEE----EGGGTEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCC-----------cccceee----eccceEE
Confidence            34555433    335678999999999999988888999999775421110           0001111    1223479


Q ss_pred             EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecccCCCeEEEEe---
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR---  219 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~---  219 (384)
                      .|.+++.+|+|.|+|.+.+.. +.....+.|.|...    +......+....+.+|+.+.|.|.+.+.|.+.+.|++   
T Consensus        75 ~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~  153 (241)
T 3grw_A           75 VMESVVPSDRGNYTCVVENKF-GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE  153 (241)
T ss_dssp             EECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECC
T ss_pred             EEEeCCcccCEEEEEEEeecC-CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEccc
Confidence            999999999999999998644 34556677777642    2233233456678899999999999999999999999   


Q ss_pred             -CCCcccccCcee------------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE
Q psy16652        220 -DNSAALSTGGSI------------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT  277 (384)
Q Consensus       220 -~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~  277 (384)
                       ++..+.......            .....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|...
T Consensus       154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA-EKAFWLSVHGPRAAE  223 (241)
T ss_dssp             SSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEC-------
T ss_pred             CCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE-EEEEEEEecCCCCCC
Confidence             666554433221            134579999999999999999999998876 778888888877643

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.89  E-value=4.9e-22  Score=160.67  Aligned_cols=177  Identities=14%  Similarity=0.235  Sum_probs=129.4

Q ss_pred             CceEEeecCceEEEEEEecccCCC---eEEEEeCCCcccccCcee-------------------------EeccEEEEcC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALSTGGSI-------------------------YRGNILKIPN  241 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~-------------------------~~~~~l~i~~  241 (384)
                      +..+.+.+|+++.|.|.+.+.+.+   .|.|++++..........                         ....+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            566788999999999999887665   489999876543211000                         0124699999


Q ss_pred             CCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE-EecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCce
Q psy16652        242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY  320 (384)
Q Consensus       242 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~  320 (384)
                      ++.+|+|.|.|.+.+..+........+.+..++.. ........+..++.+.+.|.+.+.|+|.+.|++++..+......
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~  165 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF  165 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence            99999999999999876655455555555544433 23344456677899999999999999999999998777544332


Q ss_pred             eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      ...    ......+.|.|..++.+|.|.|+|.|+|..|..+..+.|.|..
T Consensus       166 ~~~----~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          166 KHS----RSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             ECS----SSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             ecC----CcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            211    1112346799999999999999999999999888777776654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.89  E-value=2.9e-22  Score=159.94  Aligned_cols=178  Identities=28%  Similarity=0.331  Sum_probs=127.9

Q ss_pred             eeeCcceeeeccCcEEEEEE-eecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         76 SYISQEQIKDIAQTADLKCS-VQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      ...+....+.+|+++.|.|. ..+.+. +.+.|++++.....            ....+.....    ....|.|.+++.
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~------------~~~~~~~~~~----~~~~L~i~~v~~   75 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI------------TMDKRRFVSQ----TNGNLYIANVEA   75 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBC------------CCSSSEEECT----TTCCEEESSCCG
T ss_pred             cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeee------------eeCCCeEEEc----CCCeEEECcCCc
Confidence            33456677999999999999 677777 89999998765310            0111221211    123699999999


Q ss_pred             CCCeeEEEEEEEccCccee--eeEEEEEec-------CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652        154 TDAGIYKCEVIISLNNKVS--AEVELIVRR-------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA  224 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~-------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~  224 (384)
                      +|+|.|+|.+.+..+....  ..+.+.+..       +|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus        76 ~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~  154 (201)
T 3s97_C           76 SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ-FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM  154 (201)
T ss_dssp             GGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEE-CCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCC
T ss_pred             ccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEec-CCceEEecCCcEEEEEEccCCCCCceEEEeCCCcC
Confidence            9999999999875544322  334444331       2222222 23567889999999999999999999999999876


Q ss_pred             cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      .........+..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|+
T Consensus       155 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  200 (201)
T 3s97_C          155 PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQARIYVQ  200 (201)
T ss_dssp             CTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CCceeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeEEEEEe
Confidence            6543344456799999999999999999999988875 667777765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.89  E-value=1.1e-22  Score=158.35  Aligned_cols=154  Identities=17%  Similarity=0.178  Sum_probs=115.2

Q ss_pred             eEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc----------ccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        192 SVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL----------STGGS-IYRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~----------~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      .+.+.+|+++.|.|...+  .+.+.+.|++++..+.          ...+. ...++.|.|.+++.+|+|.|+|.+.|..
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence            356789999999995432  4556899999885332          11111 1234569999999999999999999988


Q ss_pred             CCc-eeeEEEEEEEecC---eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652        259 GRG-MKRNIAVEVEFAP---VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT  334 (384)
Q Consensus       259 ~~~-~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (384)
                      +.. .+..+.|.|..++   .+.        ..+..+.|.|.+.|.|.|.+.|+++|..+....+               
T Consensus        85 g~~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~---------------  141 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------------  141 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS---------------
T ss_pred             CCEEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc---------------
Confidence            775 3566777776542   222        2244589999999999999999999988754332               


Q ss_pred             eEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        335 SLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                       +.|..++.+|.|.|+|.|.|..|...+...|.+.
T Consensus       142 -~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~~  175 (176)
T 1hng_A          142 -KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP  175 (176)
T ss_dssp             -SEEEEECSCCSSCEEEEEEETTEEEEEEECCCCC
T ss_pred             -EEEEEEEccCCeEEEEEEEecCCCceecccccCC
Confidence             3445677899999999999999999988777653

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.89  E-value=4.8e-22  Score=159.86  Aligned_cols=174  Identities=18%  Similarity=0.268  Sum_probs=121.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCC--cc------------cccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AA------------LSTGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|+++.|.|.+.+.+.+.+.|+++..  .+            ........    ....|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            556778999999999999988888999998532  11            00111111    1238999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCcee--eee
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYS--VSH  324 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~--~~~  324 (384)
                      |.+.+..+........|.|..   +|.+...++...+..|+.++|.|.+.| .|++ .+.|+++|..+.......  ...
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            999987654333344566654   577776555555568999999999987 4554 899999999886541111  111


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      ...+.....+.|.|..+..+|+|.|+|.|.|.......+
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV  205 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence            111111123579999999999999999999987754433

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.89  E-value=2.6e-22  Score=166.09  Aligned_cols=189  Identities=17%  Similarity=0.233  Sum_probs=129.4

Q ss_pred             eeeeCcceeeeccCcEEEEEEeec---CCCccEEEEEeCCCCCCcccceeccC------------------ceeeeCCce
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSG------------------SLIIHDSRF  133 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~  133 (384)
                      +..++..+.+.+|++++|.|.+.+   .+.+.+.|++++....  ...+....                  ......+|+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   82 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDR--STKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRA   82 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTE--EEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTE
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCc--cEEEEeeccccccccccccccccccccCCCcCceE
Confidence            344455677899999999999987   6778899999875421  11111100                  001123344


Q ss_pred             EEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcc----eeeeEEEEEecC---CccccCCCceEEeecCceEEEEEE
Q psy16652        134 QLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK----VSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCY  206 (384)
Q Consensus       134 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~  206 (384)
                      .+..   .+..+|.|.+++.+|+|.|+|.+.+..+..    ....+.|.|..+   +......+....+.+|+.+.|.|.
T Consensus        83 ~~~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~  159 (250)
T 2fbo_J           83 SVAN---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP  159 (250)
T ss_dssp             ECSC---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCC
T ss_pred             Eecc---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEE
Confidence            3332   134579999999999999999998654432    245778888764   233333445567788999999999


Q ss_pred             ecccCCCeEEEEeCCCcccccC------------------------ceeE-eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        207 ANGFPAPTISWRRDNSAALSTG------------------------GSIY-RGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       207 ~~~~~~~~v~W~~~~~~~~~~~------------------------~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.+.|.|.+.|++++..+....                        .... ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus       160 ~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          160 CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             ecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence            9998889999999887654321                        1111 23689999999999999999999977655


Q ss_pred             eeeEEEE
Q psy16652        262 MKRNIAV  268 (384)
Q Consensus       262 ~~~~~~l  268 (384)
                      .+....+
T Consensus       240 g~~~~~~  246 (250)
T 2fbo_J          240 DADRSST  246 (250)
T ss_dssp             GEEEEEE
T ss_pred             CccceeE
Confidence            4333333

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.89  E-value=9.9e-22  Score=164.87  Aligned_cols=185  Identities=17%  Similarity=0.242  Sum_probs=124.0

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ..+.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++++.......+.............|+.+..  .....+|.|.+
T Consensus        11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~   88 (276)
T 3auv_A           11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISS   88 (276)
T ss_dssp             -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred             cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEcc
Confidence            4556777788888999999999999988888899999976532211111111110011245777654  45667899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc-------------cccCCCceEEeecCceEEEEEEecccC--CCeE
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI-------------ISDNSTRSVIVSEGQTVYLYCYANGFP--APTI  215 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v  215 (384)
                      ++.+|+|.|+|.+.+..+........|.|..++.             .....+....+.+|+++.|.|.+.+.+  .+.+
T Consensus        89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v  168 (276)
T 3auv_A           89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWI  168 (276)
T ss_dssp             CCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             CChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEE
Confidence            9999999999999865433334445666655431             111223456788999999999998766  4799


Q ss_pred             EEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        216 SWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       216 ~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .|++++.  ...                 ...+....      ...|.|.+++.+|+|.|+|.+.|.
T Consensus       169 ~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          169 HWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            9999642  110                 01111111      127999999999999999999997

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.89  E-value=9.4e-22  Score=156.57  Aligned_cols=180  Identities=15%  Similarity=0.131  Sum_probs=122.5

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+. ..+.+|++++|.|.+.+.+. .+.|+|++......     .       ....   .  ......|.|.
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~-----~-------~~~~---~--~~~~~~L~i~   63 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWI-----T-------RIPQ---E--LVKKGQFPIP   63 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHH-----H-------TSCH---H--HHTTTEEEES
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccc-----c-------cccc---c--CCcccEEEEC
Confidence            35678887776 47899999999999987665 79999987652100     0       0000   0  1122369999


Q ss_pred             ecCCCCCeeEEEEEEEcc-C-cceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652        150 EIQETDAGIYKCEVIISL-N-NKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA  224 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~-~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~  224 (384)
                      +++.+|+|.|+|.+.+.. + ...+..+.|.|..   +|.+...  ....+.+|+++.|.|.+.+. .+.+.|++++..+
T Consensus        64 ~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~  140 (198)
T 1ugn_A           64 SITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ--PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDE  140 (198)
T ss_dssp             SCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEE--SCSEEETTCCEEEEEECSSC-CSEEEEEEC----
T ss_pred             CCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccC--CccccCCCCcEEEEEecCCC-CcEEEEEECCCcc
Confidence            999999999999998765 3 2345677888876   2333221  22468899999999999887 7799999998876


Q ss_pred             cccCce---eE---eccEEEEcCCCCCCCeEEEEEEEeCCCCc----eeeEEEEEEE
Q psy16652        225 LSTGGS---IY---RGNILKIPNITKTDRGTYYCVAQNGVGRG----MKRNIAVEVE  271 (384)
Q Consensus       225 ~~~~~~---~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~  271 (384)
                      ......   ..   ....|.|.+++.+|+|.|+|.|.|..+..    .+..+.|.|.
T Consensus       141 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          141 HPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             --CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             CCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            432211   11   13689999999999999999999976532    2455666553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.89  E-value=4.1e-22  Score=160.51  Aligned_cols=178  Identities=18%  Similarity=0.179  Sum_probs=121.2

Q ss_pred             Ccceeeecc--CcEEEEEEeecCCCccEEEEEe--CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         79 SQEQIKDIA--QTADLKCSVQYADDYPVIWMKM--DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        79 ~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +..+.+.+|  ++++|.|.+.+ |.+.+.|++.  +...      +       ..+.++....     ...|.|.+++.+
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~------~-------~~~~~~~~~~-----~~~l~I~~v~~~   74 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRF------V-------PDGNRISWDS-----KKGFTIPSYMIS   74 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEE------C-------CCSSSCEEET-----TTEEEEEGGGTT
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCcc------c-------cCCCcccccC-----CccEEEccCChh
Confidence            466778999  99999999876 6679999986  2221      0       1111222211     125999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEecccC--CCeEEEEeCCCcccccCc-
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALSTGG-  229 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-  229 (384)
                      |+|.|+|.+.+......+..+.|.|..  +|.+.........+.+|+++.|.|.+.+.|  .+.+.|++++..+..... 
T Consensus        75 D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~  154 (213)
T 2x1w_L           75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV  154 (213)
T ss_dssp             TCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEE
T ss_pred             cCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEe
Confidence            999999999864433444446777753  222332334445789999999999998754  347999998876432111 


Q ss_pred             --e---------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        230 --S---------IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       230 --~---------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                        .         ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          155 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC----
T ss_pred             ccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEeccccc
Confidence              0         1223479999999999999999999998875 78889999888765

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.89  E-value=2.4e-22  Score=162.07  Aligned_cols=184  Identities=17%  Similarity=0.263  Sum_probs=124.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...+..+.+.+|++++|.|.+.+.+.+.+.|++++.......+.............|+.+..  .....+|.|.+++.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~   80 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET   80 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCCh
Confidence            3455577788999999999999988877789999976432211111111000011235676665  45567899999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc-
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST-  227 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~-  227 (384)
                      +|+|.|+|.+.+..+........|.|..   +|.+....+. .....|+.+.|.|.+.+ .|.+ .+.|++++..+... 
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  159 (213)
T 3d9a_L           81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  159 (213)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC-hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCccee
Confidence            9999999999865443344455677764   3433322221 12346899999999977 5665 89999998766543 


Q ss_pred             C----------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        228 G----------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       228 ~----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      .          +.......|.|.++..+|+|.|+|.|.|....
T Consensus       160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          160 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             eecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            0          11122348999999999999999999997554

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=157.68  Aligned_cols=160  Identities=18%  Similarity=0.235  Sum_probs=119.6

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++...                          ......|.|
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------------------------~~~~~~L~i   56 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------------------------YQDQAVLFI   56 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------------------------EESSSEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------------------------cCcccEEEE
Confidence            4467888887764 7899999999999876 66799999976430                          011236999


Q ss_pred             eecCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652        149 KEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA  224 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~  224 (384)
                      .+++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+... + ...+.+|+.+.|.|.+.+. ++.+.|++++..+
T Consensus        57 ~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~-p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~  133 (184)
T 2gi7_A           57 PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQ-P-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPA  133 (184)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEE-C-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCT
T ss_pred             CcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeC-C-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcC
Confidence            999999999999999875442 345667777754   2333222 1 2346789999999998764 4699999999876


Q ss_pred             cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ............|.|.+++.+|+|.|+|.+.|..+
T Consensus       134 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          134 PYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             TSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             cceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            55333334566799999999999999999999754

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=3.6e-22  Score=154.98  Aligned_cols=155  Identities=16%  Similarity=0.254  Sum_probs=121.6

Q ss_pred             ceEEeecCceEEEEEEecccC-CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ....+.+|+.+.|.|.+.+.| .+.+.|++++..+...      ...+.+.+++.+|+|.|+|.+.+...   +..+.|.
T Consensus        12 ~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~   82 (170)
T 3ry4_A           12 PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLT   82 (170)
T ss_dssp             CCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEE
T ss_pred             CCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCCc---eEeEEEE
Confidence            334578999999999998876 5689999998776543      23466788999999999999997433   4457888


Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      |..+|.+.. .+...+.+|+.+.|.|.+. +.|.+.+.|+++|..+....             ....|.|.+++.+|.|.
T Consensus        83 v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~~L~i~~v~~~d~G~  148 (170)
T 3ry4_A           83 VLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------------LDPTFSIPQANHSHSGD  148 (170)
T ss_dssp             EECCSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------------SCCEEEESSCCGGGCEE
T ss_pred             EECCceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------------CCCeEEEEeccccCCEE
Confidence            888776544 4456678899999999995 55668999999998764221             35679999999999999


Q ss_pred             EEEEEEeCCcc-eEEEEEEEE
Q psy16652        349 YACKAANKYGS-AQKEIELFD  368 (384)
Q Consensus       349 Y~C~a~n~~g~-~~~~~~l~v  368 (384)
                      |+|.|.|..|. .+..+.|.|
T Consensus       149 Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          149 YHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEeCcCccccccEEEEE
Confidence            99999999997 445566665

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.88  E-value=2.7e-21  Score=156.94  Aligned_cols=178  Identities=16%  Similarity=0.216  Sum_probs=121.0

Q ss_pred             CceEEeecCceEEEEEEecccC-----CCeEEEEeCCCcccc---------------cCceeE-------eccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNSAALS---------------TGGSIY-------RGNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~~~~---------------~~~~~~-------~~~~l~i~~~  242 (384)
                      +..+.+.+|+++.|.|.+.+.|     ...+.|++++..+..               ..+...       ....|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            4556788999999999987655     338999997521100               011111       1237999999


Q ss_pred             CCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEEC-CEEecCCCcee
Q psy16652        243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYS  321 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~  321 (384)
                      +.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+..|+.+.|.|.+.|+|.|.+.|+++ +..+.......
T Consensus        88 ~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~  165 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT  165 (222)
T ss_dssp             CGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEE
T ss_pred             ccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceE
Confidence            99999999999998 333 4667788888666432211112456789999999999999999999998 65554332221


Q ss_pred             eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      ......+   ......+..+..+|.|.|+|.|.|..|....++.|.|.+.|
T Consensus       166 ~~~~~~~---~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          166 NSKREEK---LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             ECC-------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             EEcCCCC---CEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            1111111   11122233456789999999999999999999999988654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.88  E-value=1.2e-22  Score=159.83  Aligned_cols=145  Identities=17%  Similarity=0.299  Sum_probs=109.2

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      ....+|+++.|.|.+.+ +. .+.|++++..+...     .+.+|.|.+ ++.+|+|.|+|.|.|..|.. +..+.+.|.
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~~v~   80 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKARVG   80 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECCCCC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEEEEe
Confidence            34578999999999987 43 49999999876543     345799999 99999999999999987763 344444333


Q ss_pred             e--cCeE----------------EecC----CC---cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeee
Q psy16652        272 F--APVI----------------TINR----PR---QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA  326 (384)
Q Consensus       272 ~--~p~~----------------~~~~----~~---~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  326 (384)
                      .  ++..                ....    ..   ..+.+|+.+.|.|.+   |.|.+.|+++|..+.....       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------  150 (186)
T 1jbj_A           81 SADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------  150 (186)
T ss_dssp             SCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------
T ss_pred             cccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------
Confidence            2  1110                0000    00   123489999999999   8889999999998864332       


Q ss_pred             ccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        327 TSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       327 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                           ....|.|.+++.+|+|.|+|.|.|..|+.
T Consensus       151 -----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 -----TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -----CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -----CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                 46789999999999999999999999976

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.88  E-value=1.5e-21  Score=161.72  Aligned_cols=201  Identities=16%  Similarity=0.184  Sum_probs=133.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-----cCceeeeCCceEEeeCCCCceEEEE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-----SGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      +...+....+.+|++|+|.|.+.+.+  ...+.|+|.........+....     ........+|+.+..+.....++|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            44567778899999999999987743  6789999955332211111111     0011123468888776566788999


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC---------------CccccCCCceEEeecCceEEEEEEecccCC
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP---------------PIISDNSTRSVIVSEGQTVYLYCYANGFPA  212 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  212 (384)
                      |.+++.+|+|.|+|.+.+...........|.|...               +.+. ..+....+.+|++++|.|.+.+.+.
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~  162 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT-QTPASLAVSLGQRATISCRASENVD  162 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE-EECSEEEECTTSCEEEEEEESSCCE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE-CcCCeEEEeCCCCEEEEEEecCccc
Confidence            99999999999999997644333345667777642               2222 2345577899999999999988776


Q ss_pred             C----eEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        213 P----TISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       213 ~----~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +    .+.|+++..  ...            ...+...    ....|.|.+++.+|+|.|+|.+.|..+........|.|
T Consensus       163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v  242 (253)
T 3uzq_A          163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI  242 (253)
T ss_dssp             ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence            6    899998532  111            0011111    12369999999999999999999865444444556767


Q ss_pred             EecCeE
Q psy16652        271 EFAPVI  276 (384)
Q Consensus       271 ~~~p~~  276 (384)
                      ...+..
T Consensus       243 ~~~~~~  248 (253)
T 3uzq_A          243 KRPLEH  248 (253)
T ss_dssp             CCC---
T ss_pred             cCCCCC
Confidence            655443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=4.6e-22  Score=154.34  Aligned_cols=165  Identities=16%  Similarity=0.223  Sum_probs=125.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+|.+...+....+.+|+++.|.|.+.+.+ ...+.|++++.....                          ....+.|.
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~--------------------------~~~~~~~~   56 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT--------------------------HTQPSYRF   56 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT--------------------------CCSSEEEE
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEccc--------------------------CccceEEE
Confidence            467788888888899999999999998875 678999997654210                          11136778


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccC
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTG  228 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~  228 (384)
                      +++.+|+|.|+|.+.+   ...+..+.|.|..++....  .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... 
T Consensus        57 ~~~~~d~G~Y~C~~~~---~~~s~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-  130 (170)
T 3ry4_A           57 KANNNDSGEYTCQTGQ---TSLSDPVHLTVLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS-  130 (170)
T ss_dssp             ECCGGGCEEEEEEETT---SBCCCCEEEEEECCSEEEE--CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-
T ss_pred             ecccccCeEEEEEEeC---CCceEeEEEEEECCceEec--CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-
Confidence            9999999999999863   3345567788877664433  233457899999999999 45566899999988765321 


Q ss_pred             ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                         ..+..|.|.+++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus       131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          131 ---HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             ---SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence               235679999999999999999999988765566666665

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.88  E-value=8.9e-22  Score=158.81  Aligned_cols=189  Identities=17%  Similarity=0.211  Sum_probs=125.4

Q ss_pred             eCcceeeeccCcEEEEEEeecC-------CCccEEEEEeCCCCCCcccceeccC---ceeeeCCceEEeeCCCCceEEEE
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA-------DDYPVIWMKMDTAKKMEPLPISMSG---SLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      .+..+.+.+|++|+|.|.+...       +...+.|++++.......+......   ......+|+.+..+...+..+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            3566778999999999998754       4678999997754221112211110   01123467776654445567899


Q ss_pred             EeecCCCCCeeEEEEEEEccCcce---eeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc----cCCCeEEEEeC
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG----FPAPTISWRRD  220 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~~~~~v~W~~~  220 (384)
                      |.+++.+|+|.|+|.+.+..+...   +..+.|.|..++..+..... ..+.+|+.+.|.|.+.+    .|.+.+.|+++
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~  164 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL-EPLESGRPTRLSCSLPGSCEAGPPLTFSWTGN  164 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---CCCCTTCCEEEEEECTTCCSCSSCCEEEEESS
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC-ccccCCCeEEEEEEeccCCCCCCCceEEEeCC
Confidence            999999999999999986542222   35678888764322111111 12678999999999976    37789999999


Q ss_pred             CCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEE
Q psy16652        221 NSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVE  269 (384)
Q Consensus       221 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~  269 (384)
                      +......  .....+.|.|..+..+|+|.|+|.|.|..+.. .+..+.|.
T Consensus       165 ~~~~~~~--~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          165 ALSPLDP--ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             TTSSSCS--SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred             CCccCCC--CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            8654322  22456789999999999999999999965432 24444443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.88  E-value=1.2e-21  Score=160.06  Aligned_cols=180  Identities=16%  Similarity=0.232  Sum_probs=127.9

Q ss_pred             CCceEEeecCceEEEEEEecccCC-CeEEEEeCCCccc---------c----cCce-----------eEeccEEEEcCCC
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAAL---------S----TGGS-----------IYRGNILKIPNIT  243 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~---------~----~~~~-----------~~~~~~l~i~~~~  243 (384)
                      .+....+.+|+++.|.|.+.+.+. +.+.|++++....         .    ....           ......|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            356678999999999999988775 7999998765422         0    0111           1223459999999


Q ss_pred             CCCCeEEEEEEEeCCCCceeeEEEEEEEecC---eEEecCCCcccccCCcE-EEEEEE-eccCCCeEEEEECCEEecCCC
Q psy16652        244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP---VITINRPRQGQALQYDA-ILECHV-EAYPPPAIVWIKDGVQIMNNQ  318 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~v~W~~~~~~~~~~~  318 (384)
                      .+|+|.|+|.+.+.........+.|.|..+|   .+...+....+..|+.+ .|.|.+ .+.|.|.+.|+++|..+....
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence            9999999999999763334777888888774   55555566667788887 999999 899999999999999987665


Q ss_pred             ----ceeeeeeec----cCccccceEEEeecCCCCCeEEEEEEEe-----CCcc-eEEEEEEEE
Q psy16652        319 ----HYSVSHFAT----SDEFSDTSLRVITIERRQFGQYACKAAN-----KYGS-AQKEIELFD  368 (384)
Q Consensus       319 ----~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~v  368 (384)
                          +..+.....    +.....+.|.|.....+|.|.|+|.|.|     ..|. .+..+.|.|
T Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence                433332111    1111125678875556679999999999     4554 444444443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.88  E-value=5.9e-22  Score=159.36  Aligned_cols=182  Identities=14%  Similarity=0.242  Sum_probs=121.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +.. |....+.+|++++|.|.+.+.+.+.+.|+++........+.............|+.+..  ......|.|.+++.+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~   80 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEAD   80 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHH
Confidence            444 67778999999999999988777789999975432111111111000011235776665  455678999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc--
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST--  227 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~--  227 (384)
                      |+|.|+|.+.+..+........|.|..   +|.+....+.. .+.+|+.+.|.|.+.+ .|.+ .+.|++++..+...  
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  159 (210)
T 1lk3_L           81 DTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL  159 (210)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred             HCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence            999999999865443334445677754   33333211211 1347999999999987 4554 89999998766433  


Q ss_pred             ---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        228 ---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       228 ---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                               .+.......|.|.++..+|+|.|+|.|.|....
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence                     011122347999999999999999999996553

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=5.6e-22  Score=156.41  Aligned_cols=164  Identities=13%  Similarity=0.182  Sum_probs=120.0

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEE
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVE  269 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~  269 (384)
                      .+.+|++++|.|.+.+ +.+.+.|++++..+....   .....+..|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~   92 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   92 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence            5889999999999875 356899999987654211   11224568999999999999999999885432 225567777


Q ss_pred             EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      |..   +|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+++|..+...  ..       .......|.|.+++.+|+
T Consensus        93 V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~--~~-------~~~~~~~L~I~~v~~~d~  161 (188)
T 1oll_A           93 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ--RG-------YGKVQAEFPLGPVTTAHR  161 (188)
T ss_dssp             EESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE--EE-------ECSSEEEEEEEECCGGGC
T ss_pred             ecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc--cc-------CCCceeEEEECCCCcCCC
Confidence            764   56666544 456789999999999876 45799999998765431  00       112467899999999999


Q ss_pred             eEEEEEEEeCCc---ceEEEEEEEEe
Q psy16652        347 GQYACKAANKYG---SAQKEIELFDR  369 (384)
Q Consensus       347 G~Y~C~a~n~~g---~~~~~~~l~v~  369 (384)
                      |.|+|.|.|...   ..+..+.|.|.
T Consensus       162 G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          162 GTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             cEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            999999998751   23445667665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=1.6e-21  Score=160.76  Aligned_cols=220  Identities=15%  Similarity=0.122  Sum_probs=127.4

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+. ..+.+|++|+|.|.+.. +...+.|+|++.......           ...+    .........|.|.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~-----------~~~~----~~~~~~~~~L~I~   67 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH-----------LIGE----HHDGVSKANFSIG   67 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE-----------EECB----CCTTCEEEEEEEC
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce-----------eeee----ccCCCceEEEEee
Confidence            45778877665 67899999999999864 456899999886521100           0000    0112345679999


Q ss_pred             ecCCCCCeeEEEEEEEccC----cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652        150 EIQETDAGIYKCEVIISLN----NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      +++.+|+|.|+|.+.+...    ...+..+.|.|...   |.+... +. ..+.+|++++|.|.+.+. .+.+.|+|++.
T Consensus        68 ~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~-p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~  144 (257)
T 1b6u_A           68 PMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQ-PG-PTVLAGESVTLSCSSRSS-YDMYHLSREGE  144 (257)
T ss_dssp             SCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECS-SC-TTCBTTCEEEEEEECSSC-CSEEEEEETTS
T ss_pred             cCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEcc-CC-CccCCCCEEEEEEeCCCC-CcEEEEEECCc
Confidence            9999999999999975432    23456778888753   333322 11 247899999999999774 46899999998


Q ss_pred             cccccCcee-----EeccEEEEcCCCCCCCeEEEEEEEeCCC----CceeeEEEEEEEecCeEEecCC-CcccccCCcEE
Q psy16652        223 AALSTGGSI-----YRGNILKIPNITKTDRGTYYCVAQNGVG----RGMKRNIAVEVEFAPVITINRP-RQGQALQYDAI  292 (384)
Q Consensus       223 ~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~  292 (384)
                      .+.......     .....|.|.+++  |+|.|+|.+.+...    ...+..+.|.|..+|.+..+++ ......|..+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~  222 (257)
T 1b6u_A          145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRH  222 (257)
T ss_dssp             SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------
T ss_pred             ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEE
Confidence            765432111     124679999998  99999999997532    2346678899998887653322 23345678888


Q ss_pred             EEEEEeccCCCeEEEEECCE
Q psy16652        293 LECHVEAYPPPAIVWIKDGV  312 (384)
Q Consensus       293 l~C~~~~~p~~~v~W~~~~~  312 (384)
                      |.|.+ |.+.+.+.|...+.
T Consensus       223 l~~~~-~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          223 LHAAA-EQKLISEEDLNLDL  241 (257)
T ss_dssp             --------------------
T ss_pred             EEEEE-cchHHHHHHhhhhh
Confidence            88776 55777888876553

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=8.1e-21  Score=159.76  Aligned_cols=197  Identities=15%  Similarity=0.209  Sum_probs=129.2

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L  146 (384)
                      .+...|....+.+|++|+|.|.+.+.+  .+.+.|++.+.......+.... ....    ....+|+.+..+......+|
T Consensus        28 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL  107 (282)
T 1qok_A           28 VKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYL  107 (282)
T ss_dssp             CEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEE
T ss_pred             EEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEE
Confidence            345567788899999999999998764  5789999976432111111111 0100    11246787776545567899


Q ss_pred             EEeecCCCCCeeEEEEEEEccCc----ceeeeEEEEEecCCc--------------cccCCCceEEeecCceEEEEEEec
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNN----KVSAEVELIVRRPPI--------------ISDNSTRSVIVSEGQTVYLYCYAN  208 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~  208 (384)
                      .|.+++.+|+|.|+|.+.+..+.    .....+.|.|..++.              .....+....+.+|++++|.|.+.
T Consensus       108 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  187 (282)
T 1qok_A          108 QLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSAS  187 (282)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEES
T ss_pred             EECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEec
Confidence            99999999999999999865431    122445677765431              111224456789999999999998


Q ss_pred             ccCCCeEEEEe--CCCcccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        209 GFPAPTISWRR--DNSAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       209 ~~~~~~v~W~~--~~~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.+ +.+.|++  ++..+..            ..+...    ....|.|.+++.+|+|.|+|.+.+...........|.|
T Consensus       188 ~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  266 (282)
T 1qok_A          188 SSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL  266 (282)
T ss_dssp             SCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence            888 8999999  4443310            111111    13479999999999999999998754332233345555


Q ss_pred             E
Q psy16652        271 E  271 (384)
Q Consensus       271 ~  271 (384)
                      .
T Consensus       267 ~  267 (282)
T 1qok_A          267 K  267 (282)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=4e-21  Score=158.55  Aligned_cols=193  Identities=18%  Similarity=0.263  Sum_probs=127.5

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC-c----eeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG-S----LIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.+  .+.+.|++.........+...... .    .....+|+.+..+......+|.|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            3557789999999999998865  578999997543211111111110 0    01124678777655566789999999


Q ss_pred             CCCCCeeEEEEEEEcc-CcceeeeEEEEEecCCc--------------cccCCCceEEeecCceEEEEEEecccCCCeEE
Q psy16652        152 QETDAGIYKCEVIISL-NNKVSAEVELIVRRPPI--------------ISDNSTRSVIVSEGQTVYLYCYANGFPAPTIS  216 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~  216 (384)
                      +.+|+|.|+|.+.+.. .........|.|..++.              .....+....+.+|+++.|.|.+.+.+.+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~  168 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA  168 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence            9999999999998652 11233445777765421              11122445678899999999999998888999


Q ss_pred             EEe--CCCcccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        217 WRR--DNSAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       217 W~~--~~~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      |++  ++..+..            ..+...    ...+|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999  4443310            111111    234699999999999999999998543333334455553

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.88  E-value=3.9e-21  Score=158.96  Aligned_cols=182  Identities=16%  Similarity=0.295  Sum_probs=123.0

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+............+|+.+..  .....+|.|.+++
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~   82 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG--SGTDYSLTISNLE   82 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC--CCCEEEEEEccCC
Confidence            45666677788999999999999998888899999976442222222111111122346776554  4567789999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEecCC------------------ccccCCCceEEeecCceEEEEEEecccC--C
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPP------------------IISDNSTRSVIVSEGQTVYLYCYANGFP--A  212 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~  212 (384)
                      .+|+|.|+|.+.+..+........|.|..++                  ......+....+.+|+++.|.|.+.+.+  .
T Consensus        83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~  162 (250)
T 3esu_F           83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSS  162 (250)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGG
T ss_pred             hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccC
Confidence            9999999999976544334455567766531                  1111223456789999999999998766  6


Q ss_pred             CeEEEEeC--CCccccc-----------------CceeEe------ccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        213 PTISWRRD--NSAALST-----------------GGSIYR------GNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       213 ~~v~W~~~--~~~~~~~-----------------~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                      +.+.|+++  +..+...                 .+....      ..+|.|.+++.+|+|.|+|.+.+
T Consensus       163 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          163 SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            79999997  3332111                 111111      12699999999999999999997

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=1e-21  Score=154.89  Aligned_cols=179  Identities=15%  Similarity=0.187  Sum_probs=124.5

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+.. .+.+|++|+|.|.+.+ +...+.|+|++....     .        ...+    .........|.|.+
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~-----~--------~~~~----~~~~~~~~~L~I~~   63 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFA-----V--------DRPK----PPERINKVKFYIPD   63 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEE-----E--------ECCS----SCTTCCEEEEEESS
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccc-----c--------cccc----cCCCcceeEEEeCc
Confidence            46788887776 8999999999999865 346899999764310     0        0000    01133456899999


Q ss_pred             cCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652        151 IQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS  226 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~  226 (384)
                      ++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+... + ...+.+|+.++|.|.+.+ +.+.+.|++++..+..
T Consensus        64 v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~-p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~  140 (188)
T 1oll_A           64 MNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV  140 (188)
T ss_dssp             CCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEE-S-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE
T ss_pred             CCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEEC-C-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc
Confidence            9999999999999764332 345667788764   3333321 2 345789999999999876 4568999999876654


Q ss_pred             cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC--CceeeEEEEEEE
Q psy16652        227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG--RGMKRNIAVEVE  271 (384)
Q Consensus       227 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~  271 (384)
                      ..........|.|.+++.+|+|.|+|.+.|...  ...+..+.|.|.
T Consensus       141 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          141 QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            211122356899999999999999999998642  223555666653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.88  E-value=9.1e-22  Score=158.63  Aligned_cols=185  Identities=14%  Similarity=0.195  Sum_probs=126.3

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.+...+....+.+|++++|.|.+.+.+.+.+.|++.+.......+.............|+.+..  .....+|.|.+++
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~   79 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLE   79 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCC
Confidence            45666678888999999999999998888899999976432222122111111112356777764  4567899999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEe---cCCccccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCCCccccc
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNSAALST  227 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~  227 (384)
                      .+|+|.|+|.+.+..+........|.|.   .+|.+... +....+..|+.+.|.|.+.+.++  +.+.|++++..+...
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIF-PPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEE-CCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeee-CCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            9999999999976544444555677773   33333321 11222346888999999987544  389999998766542


Q ss_pred             C-----------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        228 G-----------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       228 ~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      .           +.......|.|.....+|+|.|+|.|.|....
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            1           11122346888888888999999999997543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.88  E-value=5.6e-21  Score=155.45  Aligned_cols=187  Identities=16%  Similarity=0.217  Sum_probs=117.8

Q ss_pred             eCcceeeeccCcEEEEEEeecCCC---ccEEEEEeCCCCCCcccceeccCce------eeeCCceEEeeC-CCCceEEEE
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYADD---YPVIWMKMDTAKKMEPLPISMSGSL------IIHDSRFQLTTD-PETSTYILS  147 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~L~  147 (384)
                      +.+++.+.+|++|+|.|.+.+.+.   ..|.|+|++...   .+.+...+..      .....|...... ...+..+|.
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~---~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   86 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQ---VVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALR   86 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCC---EEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEE
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCc---eEEEEeCCeEcccccCccccceEEEecccccCCeEEEE
Confidence            445577899999999999976543   369999977541   1111111111      111234443332 245678999


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALS  226 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~  226 (384)
                      |.+++.+|+|.|+|.+.+.. +.....+.+.+..++.   .......+.+|+.+.|.|.+.+ .|.|.+.|++++..+..
T Consensus        87 I~~v~~~D~G~Y~C~a~n~~-~~~~~~v~~~~~~~~~---~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A           87 IHNVTASDSGKYLCYFQDGD-FYEKALVELKVAALGS---DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCC---CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             EeeCchHHCeeEEEEEECCC-cEEEEEEEEeecccee---cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            99999999999999998643 3334444444433322   2244566789999999999977 68999999997654433


Q ss_pred             cCc-eeE-e-c---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        227 TGG-SIY-R-G---NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       227 ~~~-~~~-~-~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      ... ... . +   ..+.+..++.+|+|.|+|.|.|..+.. .+...|.|..
T Consensus       163 ~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~~~~v~v~e  213 (226)
T 4f80_A          163 TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EKTASISIAD  213 (226)
T ss_dssp             CEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EEEEEECCCT
T ss_pred             CCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EEEEEEEECC
Confidence            222 111 1 1   134445677899999999999998875 5666666643

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.88  E-value=9.7e-21  Score=155.36  Aligned_cols=183  Identities=16%  Similarity=0.231  Sum_probs=122.0

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+...+..+.+.+|++|+|.|. .+.+.+.+.|++.........+........   .....|+.+.. ......+|.|.+
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~   79 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILEL   79 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESS
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEec
Confidence            3556677788999999999999 667788999999743221111111111110   11245676654 244567899999


Q ss_pred             cCCCCCeeEEEEEEEccCc----ceeeeEEEEEecCCc-----------cccCCCceEEeecCceEEEEEEecccCCCeE
Q psy16652        151 IQETDAGIYKCEVIISLNN----KVSAEVELIVRRPPI-----------ISDNSTRSVIVSEGQTVYLYCYANGFPAPTI  215 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v  215 (384)
                      ++.+|+|.|+|.+.+..+.    .......|.|...+.           .....+....+.+|+++.|.|.+.+.|.+.+
T Consensus        80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i  159 (238)
T 2p1y_A           80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF  159 (238)
T ss_dssp             CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred             CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence            9999999999999865321    122345677765442           1112345667899999999999999888999


Q ss_pred             EEEeCCCccc--------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        216 SWRRDNSAAL--------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       216 ~W~~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      .|++++....              ........      ...|.|.+++.+|+|.|+|.+.|..
T Consensus       160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999642110              01111111      2479999999999999999999973

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.88  E-value=1.8e-21  Score=157.55  Aligned_cols=173  Identities=19%  Similarity=0.299  Sum_probs=119.6

Q ss_pred             eEEeecCceEEEEEEeccc-CCCeEEEEeCCCcccc---------------c---CceeE----eccEEEEcCCCCCCCe
Q psy16652        192 SVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALS---------------T---GGSIY----RGNILKIPNITKTDRG  248 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~---------------~---~~~~~----~~~~l~i~~~~~~d~G  248 (384)
                      ...+.+|+++.|.|.+.+. +.+.+.|++.......               .   .+...    ....|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            6778999999999999887 8889999984311000               0   01111    1246999999999999


Q ss_pred             EEEEEEEeCCC----CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCC
Q psy16652        249 TYYCVAQNGVG----RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQ  318 (384)
Q Consensus       249 ~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~  318 (384)
                      .|+|.+.+..+    ........|.|.    .+|.+...++......++.++|.|.+.+ .|.+ .+.|+++|..+....
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  168 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV  168 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCce
Confidence            99999998765    122345677777    5677776666666667799999999988 5767 899999999886532


Q ss_pred             ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652        319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI  364 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  364 (384)
                      .........+.....+.|.|.....+|.|.|+|.|.|..+..+.++
T Consensus       169 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          169 DTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             ----------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            2111111111111234588888888899999999999998777654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.88  E-value=5.7e-22  Score=164.11  Aligned_cols=188  Identities=15%  Similarity=0.250  Sum_probs=124.1

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY  144 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (384)
                      ...+.+...+..+.+.+|++|+|.|.+.+.+     .+.+.|++++.......+............+|+.+..  .....
T Consensus        32 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~  109 (252)
T 3bkj_L           32 SSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDF  109 (252)
T ss_dssp             --CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEE
T ss_pred             ccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEE
Confidence            3456677778888899999999999998766     5799999976432111111111100111245776665  45667


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEe
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRR  219 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~  219 (384)
                      +|.|.+++.+|+|.|+|.+.+...........|.|..   +|.+....+. ..+.+|+.++|.|.+.+ .|.+ ++.|++
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  188 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI  188 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence            8999999999999999999755433333445677754   2332221111 11336889999999987 4544 799999


Q ss_pred             CCCccccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        220 DNSAALST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       220 ~~~~~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ++..+...           .+.......|.|.++..+|+|.|+|.|.|....
T Consensus       189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            98765432           011122346899999999999999999996544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.88  E-value=4e-22  Score=156.81  Aligned_cols=173  Identities=20%  Similarity=0.288  Sum_probs=122.8

Q ss_pred             ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeC-CCCceEEEEEeecCCC
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTD-PETSTYILSIKEIQET  154 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~L~i~~~~~~  154 (384)
                      .+.+.+|++++|.|.+.+.+.+.+.|++++...     .+.......     ....++.+... ...+..+|.|.+++.+
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~-----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~   78 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIK-----ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE   78 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCE-----EEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGG
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccc-----eEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHH
Confidence            345799999999999988788899999987531     111000000     11233333221 0223557999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG  234 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  234 (384)
                      |+|.|+|.+.+..     ..+.|.|...+.     +....+.+|+.+.|.|.+.+.|.+.+.|++++..+      ....
T Consensus        79 D~G~Y~C~~~~~~-----~~~~l~V~~~~~-----~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~  142 (184)
T 2ny1_B           79 DSDTYICEVEDQK-----EEVQLLVFGLTA-----NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGG  142 (184)
T ss_dssp             GCEEEEEEETTEE-----EEEEEEEEEEEE-----SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEES
T ss_pred             HCEEEEEEEEcCC-----CcEEEEEEEecC-----CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCc
Confidence            9999999986432     245566653221     22346789999999999988899999999987654      3356


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV  275 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~  275 (384)
                      ..|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|...|.
T Consensus       143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~p~  182 (184)
T 2ny1_B          143 KTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQK  182 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCC
T ss_pred             eEEEEecCCcCCCeEEEEEEEECCceE-EEEEEEEEEecCC
Confidence            789999999999999999999876654 6777887776653

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.88  E-value=3.7e-21  Score=159.64  Aligned_cols=196  Identities=17%  Similarity=0.220  Sum_probs=129.3

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-c----CceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-S----GSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++|+|.|.+.+.+  ...+.|++.........+.... .    .......+|+.+..+......+|.|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            34556689999999999998754  6789999965432212111111 0    001123468887765556678899999


Q ss_pred             cCCCCCeeEEEEEEEcc---CcceeeeEEEEEec----------------CCccccCCCceEEeecCceEEEEEEecccC
Q psy16652        151 IQETDAGIYKCEVIISL---NNKVSAEVELIVRR----------------PPIISDNSTRSVIVSEGQTVYLYCYANGFP  211 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~----------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~  211 (384)
                      ++.+|+|.|+|.+.+..   .........|.|..                ++.+. ..+....+.+|++++|.|.+.+.+
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~  166 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLT-QSPSSLSASLGERVSITCRASQDI  166 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEE-EECSEEEECTTCCEEEEEEESSCC
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEE-cCCCeEEEECCCCEEEEEEEecCC
Confidence            99999999999997541   23334556777764                22222 234557789999999999999888


Q ss_pred             CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec
Q psy16652        212 APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA  273 (384)
Q Consensus       212 ~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  273 (384)
                      .+.+.|++...  ...            ...+...    ....|.|.+++.+|+|.|+|.+.+...........|.|..+
T Consensus       167 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          167 GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            88999998532  111            0011111    12369999999999999999999865443344566666554


Q ss_pred             C
Q psy16652        274 P  274 (384)
Q Consensus       274 p  274 (384)
                      +
T Consensus       247 ~  247 (256)
T 3umt_A          247 A  247 (256)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.88  E-value=2.5e-21  Score=155.97  Aligned_cols=175  Identities=16%  Similarity=0.266  Sum_probs=121.5

Q ss_pred             CceEEeecCceEEEEEEecccC---CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCe
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP---APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRG  248 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G  248 (384)
                      +....+.+|+++.|.|.+.+.+   .+.+.|++++.  .+.            ...+...    ....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            4556789999999999998876   36899998642  210            0111111    1237999999999999


Q ss_pred             EEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccC-CC-eEEEEECCEEecCCCceee
Q psy16652        249 TYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP-PP-AIVWIKDGVQIMNNQHYSV  322 (384)
Q Consensus       249 ~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~v~W~~~~~~~~~~~~~~~  322 (384)
                      .|+|.+.+..+........|.|.    .+|.+...++......|+.++|.|.+.|.+ ++ .+.|+++|..+..+.....
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  166 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ  166 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC
Confidence            99999998765332334556663    577777655555556788999999998854 43 8999999998865422111


Q ss_pred             -eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652        323 -SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI  364 (384)
Q Consensus       323 -~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  364 (384)
                       .....+.....+.|.|.....+|.|.|+|.|.|.......++
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          167 PSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             ceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence             111111112345688999999999999999999987655544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.88  E-value=6.5e-21  Score=158.14  Aligned_cols=200  Identities=14%  Similarity=0.232  Sum_probs=133.4

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCce
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETST  143 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~  143 (384)
                      .++.+...+..+.+.+|++|+|.|.+.+.  +...+.|++.........+.... ....    ....+|+.+..+.....
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            45677778888899999999999999873  56789999976443222222211 1111    11246888876556778


Q ss_pred             EEEEEeecCCCCCeeEEEEEEEc-----------cCcceeeeEEEEEecCCc--------------cccCCCceEEeecC
Q psy16652        144 YILSIKEIQETDAGIYKCEVIIS-----------LNNKVSAEVELIVRRPPI--------------ISDNSTRSVIVSEG  198 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g  198 (384)
                      .+|.|.+++.+|+|.|+|.+.+.           ..........|.|..++.              .....+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            89999999999999999999764           123344556777776422              11233556778999


Q ss_pred             ceEEEEEEecccCC-CeEEEEeCC--Ccccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        199 QTVYLYCYANGFPA-PTISWRRDN--SAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       199 ~~~~l~C~~~~~~~-~~v~W~~~~--~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ++++|.|.+.+.+. +.+.|++..  .....            ..+...    ....|.|.+++.+|+|.|+|.+.+...
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999988765 799999842  22110            111111    123699999999999999999998544


Q ss_pred             CceeeEEEEEE
Q psy16652        260 RGMKRNIAVEV  270 (384)
Q Consensus       260 ~~~~~~~~l~v  270 (384)
                      ........|.|
T Consensus       245 ~~~g~gt~l~V  255 (256)
T 3juy_B          245 YTFGQGTKLER  255 (256)
T ss_dssp             CEECCCEEEEE
T ss_pred             ceEcCCEEEEE
Confidence            33333334443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.87  E-value=1.8e-21  Score=160.78  Aligned_cols=177  Identities=15%  Similarity=0.203  Sum_probs=118.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCe-----EEEEeCCCcccccC---------------cee-------EeccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSAALSTG---------------GSI-------YRGNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~-----v~W~~~~~~~~~~~---------------~~~-------~~~~~l~i~~~  242 (384)
                      +....+.+|+++.|.|.+.+.|.+.     +.|++++.......               +..       .....|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            4556788999999999998776654     99999754322100               000       01235999999


Q ss_pred             CCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCce
Q psy16652        243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHY  320 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~  320 (384)
                      +.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+.. ....|+.+.|.|.+.| +|.+ .+.|+++|..+......
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~  167 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEI  167 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEE
T ss_pred             CHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcccc
Confidence            9999999999999976653 66788999999988776553 3456778889999998 8988 99999999654322110


Q ss_pred             -------eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc--eEEEEEEEE
Q psy16652        321 -------SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS--AQKEIELFD  368 (384)
Q Consensus       321 -------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v  368 (384)
                             .......+.....+.|.|.....+|.|.|+|.|.|..+.  ....+.|.|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          168 SEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence                   111111122223456888888889999999999999987  455666666

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.87  E-value=3e-21  Score=155.57  Aligned_cols=177  Identities=19%  Similarity=0.303  Sum_probs=124.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|+++.|.|.+.+.+.+.+.|++.......              ..+...    ....|.|.+++.+|+|.|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence            4556789999999999999888889999984321110              111111    1237999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEE---EecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCC--ceeeee
Q psy16652        252 CVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQ--HYSVSH  324 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~--~~~~~~  324 (384)
                      |.+.+..+........|.|   ..+|.+...+.......|+.+.|.|.+.+.+++  .+.|+++|..+....  ......
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  167 (213)
T 3r06_A           88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQD  167 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCC
T ss_pred             EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCcee
Confidence            9999875544344566777   567888776766666778889999999886543  899999999886542  111111


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      ...+.....+.|.|.....+|.|.|+|.|.|..........+
T Consensus       168 ~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~~  209 (213)
T 3r06_A          168 SKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKTL  209 (213)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred             CCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEec
Confidence            111111223468888888889999999999987655444333

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.87  E-value=5.8e-21  Score=158.35  Aligned_cols=185  Identities=15%  Similarity=0.285  Sum_probs=129.0

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+... .........+|+.+..+......+|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            3566667778899999999999998888889999996643322222211 222333456788876555677889999999


Q ss_pred             CCCCCeeEEEEEEEccCc---ceeeeEEEEEec--------------------CCccccCCCceEEeecCceEEEEEEec
Q psy16652        152 QETDAGIYKCEVIISLNN---KVSAEVELIVRR--------------------PPIISDNSTRSVIVSEGQTVYLYCYAN  208 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~  208 (384)
                      +.+|+|.|+|.+.+..+.   .....+.|.|..                    ++.+. ..+....+.+|++++|.|.+.
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~  162 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-QSPRNKVTVTGENVTLSCRQT  162 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-ESCSEEEEETTCCEEECEEEC
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-ecCCEEEEeCCCcEEEEEEcC
Confidence            999999999999865432   223345677664                    22222 335566788999999999998


Q ss_pred             ccCCCeEEEEeCCCccccc-----------------Ccee-----EeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        209 GFPAPTISWRRDNSAALST-----------------GGSI-----YRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       209 ~~~~~~v~W~~~~~~~~~~-----------------~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      +. .+.+.|++........                 .+..     .....|.|.+++.+|+|.|+|.+.|..+
T Consensus       163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            75 6789999843211100                 0000     1234799999999999999999998654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=6.2e-22  Score=171.82  Aligned_cols=179  Identities=17%  Similarity=0.219  Sum_probs=137.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++......             ..     ........+|.|.+
T Consensus       157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~-------------~~-----~~~~~~~~~L~i~~  218 (347)
T 2ifg_A          157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-------------VM-----KSGGLPSLGLTLAN  218 (347)
T ss_dssp             CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE-------------EC-----CCCCSSEEEEEEES
T ss_pred             CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecc-------------cc-----cceecccceEEEee
Confidence            4788888888889999999999999998888899999987642110             00     01134566899999


Q ss_pred             cCCCCCe-eEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652        151 IQETDAG-IYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG  229 (384)
Q Consensus       151 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~  229 (384)
                      ++.+|+| .|+|.+.+.. +..+..+.|.|..+|.+.     .....+|+.+.|.|.+.|.|.|.+.|++++..+.....
T Consensus       219 v~~~D~G~~Y~C~a~n~~-g~~~~~~~l~V~~~P~i~-----~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~  292 (347)
T 2ifg_A          219 VTSDLNRKNVTCWAENDV-GRAEVSVQVNVSFPASVQ-----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF  292 (347)
T ss_dssp             CCSTTTTCCEEECCEETT-EECCEEECCCCBEEEEEE-----ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSS
T ss_pred             CChHHCCCeEEEEEEcCC-CCEEEEEEEEEcCCCeee-----eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcc
Confidence            9999999 9999998664 444666777776666641     11245789999999999999999999999887764433


Q ss_pred             eeE-----------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652        230 SIY-----------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP  274 (384)
Q Consensus       230 ~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p  274 (384)
                      ...           ..++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  347 (347)
T 2ifg_A          293 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNP  347 (347)
T ss_dssp             EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECSCCCC
T ss_pred             eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce-eeEEEEEecCCC
Confidence            221           24579999999999999999999998875 677777776554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.87  E-value=8.3e-22  Score=159.95  Aligned_cols=182  Identities=16%  Similarity=0.247  Sum_probs=120.6

Q ss_pred             EEeecCceEEEEEEecccCC-----CeEEEEeCCCcccc-------------cCceeE-------eccEEEEcCCCCCCC
Q psy16652        193 VIVSEGQTVYLYCYANGFPA-----PTISWRRDNSAALS-------------TGGSIY-------RGNILKIPNITKTDR  247 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~~-------------~~~~~~-------~~~~l~i~~~~~~d~  247 (384)
                      +.+.+|+++.|.|.+.+.+.     +.+.|++++.....             ..+...       .+..|.|.+++.+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45789999999999877643     68999998754310             111111       145799999999999


Q ss_pred             eEEEEEEEeCCCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEE-CCEEecCCCceee
Q psy16652        248 GTYYCVAQNGVGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIK-DGVQIMNNQHYSV  322 (384)
Q Consensus       248 G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~-~~~~~~~~~~~~~  322 (384)
                      |.|+|.+.+....  +..+.|.|..+   |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|++ ++..+.....  .
T Consensus        85 G~Y~C~~~~~~~~--~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~--~  159 (222)
T 4i0k_A           85 GSYTCFVSIQDFD--SAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT--T  159 (222)
T ss_dssp             SCEEEEEEECCCC--CCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE--E
T ss_pred             EEEEEEEEeCCCc--eEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc--e
Confidence            9999999985322  44455666544   5555433 3466789999999999 889999999999 4544432221  1


Q ss_pred             eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCccCCc
Q psy16652        323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPI  380 (384)
Q Consensus       323 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~  380 (384)
                      ..... .......|.|.+++.+|.|.|+|.|.|..|....++.|.|.++|-....++-
T Consensus       160 ~~~~~-~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  216 (222)
T 4i0k_A          160 SQMAN-ERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPETG  216 (222)
T ss_dssp             EEEEC-TTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----------
T ss_pred             eEEcC-CCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCCccC
Confidence            11111 1112345889999999999999999999999999999999988755444433

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.87  E-value=3.6e-23  Score=179.45  Aligned_cols=219  Identities=14%  Similarity=0.192  Sum_probs=131.2

Q ss_pred             CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CC-c
Q psy16652         25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DD-Y  102 (384)
Q Consensus        25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~  102 (384)
                      .+..+|+|.+++.+|+|.|.|.+...........   .+........+|.+...+....+.+|+.++|.|.+.+. |. +
T Consensus        76 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~---~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  152 (344)
T 1za6_B           76 ASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGT---LVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  152 (344)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEETTTTCEECCCE---EEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCC
T ss_pred             CCEEEEEECCCCcccCEEEEEEEecCcceecCcE---EEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCe
Confidence            3557999999999999999999876311000000   00000112345666554544556899999999999875 53 7


Q ss_pred             cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEEE---
Q psy16652        103 PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-VSAEVELI---  178 (384)
Q Consensus       103 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~---  178 (384)
                      .+.|++++....     ..........+++|...       ..|.|.+++.+| |.|+|.+.+..+.. ....+.+.   
T Consensus       153 ~v~W~k~g~~~~-----~~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~  219 (344)
T 1za6_B          153 TVSWNSGALTSG-----VHTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCD  219 (344)
T ss_dssp             CEEETTTTBCTT-----EEECCCEECTTSCEEEE-------EEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-
T ss_pred             EEEEecCCccCc-----eeECCCeECCCCCEEEE-------EEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccc
Confidence            999999775421     00011111223344333       369999998888 99999998765432 12222111   


Q ss_pred             -------------------EecCCccccCCCceEEeecCceEEEEEEeccc-C-CCeEEEEeCCCcccccCc--------
Q psy16652        179 -------------------VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-P-APTISWRRDNSAALSTGG--------  229 (384)
Q Consensus       179 -------------------v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~--------  229 (384)
                                         +..+|.+....+... ...|..+.|.|.+.|. | .+.+.|++++..+.....        
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~  298 (344)
T 1za6_B          220 KTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD  298 (344)
T ss_dssp             -------------------CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTT
T ss_pred             cccccCCCCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCC
Confidence                               112333222111111 2246679999999884 4 358999999987643211        


Q ss_pred             -eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        230 -SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       230 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                       .......|.|.....+|+|.|+|.|.|....
T Consensus       299 g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          299 GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             SCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             CcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence             1112235667666667899999999996543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=2.7e-21  Score=160.42  Aligned_cols=180  Identities=19%  Similarity=0.233  Sum_probs=121.6

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +....+.+|++|+|.|.+.+.+  .+.+.|++.+.......+........    .....|+.+..+......+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            4456789999999999998764  67899999753211111111111110    01246888776545677899999999


Q ss_pred             CCCCeeEEEEEEEccC--------cceeeeEEEEEecCCc--------------cccCCCceEEeecCceEEEEEEeccc
Q psy16652        153 ETDAGIYKCEVIISLN--------NKVSAEVELIVRRPPI--------------ISDNSTRSVIVSEGQTVYLYCYANGF  210 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~  210 (384)
                      .+|+|.|+|.+.+..+        ........|.|..++.              .....+....+.+|++++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            9999999999986532        1122445777775431              11122345568899999999999888


Q ss_pred             CCCeEEEEe--CCCcccc------------cCcee----EeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        211 PAPTISWRR--DNSAALS------------TGGSI----YRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       211 ~~~~v~W~~--~~~~~~~------------~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      +.+.+.|++  ++..+..            ..+..    .....|.|.+++.+|+|.|+|.+.|..
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            888999999  4443310            11111    112479999999999999999999853

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.87  E-value=5e-21  Score=158.59  Aligned_cols=195  Identities=17%  Similarity=0.223  Sum_probs=129.5

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..|....+.+|++|+|.|.+.+.+  .+.+.|++.+.......+.... .+.    .....+|+.+..+......+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            345667789999999999997764  5789999965321111111110 000    011246787776545667899999


Q ss_pred             ecCCCCCeeEEEEEEEccC----cceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC-----eEEEEe-
Q psy16652        150 EIQETDAGIYKCEVIISLN----NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-----TISWRR-  219 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~v~W~~-  219 (384)
                      +++.+|+|.|+|.+.+..+    ......+.|.|..++.+. ..+....+.+|++++|.|.+.+.+.+     .+.|++ 
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT-QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE-EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE-ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            9999999999999986533    122345677777665443 22455678999999999999887764     899999 


Q ss_pred             -CCCcccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        220 -DNSAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       220 -~~~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                       ++..+..            ..+...    ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus       164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence             4543310            111111    1247999999999999999999985433333344565543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.87  E-value=7.5e-22  Score=158.86  Aligned_cols=181  Identities=15%  Similarity=0.228  Sum_probs=123.4

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+..++ ...+.+|++|+|.|.+.  +...+.|++.........+.............|+.+..  .....+|.|.+++.
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~   77 (211)
T 3tv3_L            3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQT   77 (211)
T ss_dssp             CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCG
T ss_pred             eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCCh
Confidence            344445 77789999999999998  77899999975332212121111111112346777665  55678899999999


Q ss_pred             CCCeeEEEEEEEccC-cceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc
Q psy16652        154 TDAGIYKCEVIISLN-NKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS  226 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~  226 (384)
                      +|+|.|+|.+.+..+ ......+.|.|.    .+|.+.... ....+.+|+.+.|.|.+.+.  +.+.+.|++++..+..
T Consensus        78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFP-PSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             GGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEEC-CCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             hHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecC-CchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            999999999987655 245566778777    334333221 11223369999999999874  3468999999876643


Q ss_pred             c----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        227 T----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       227 ~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      .          .+.......|.|..+..+|+|.|+|.|.|..+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            1          111223357899999889999999999997643

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.87  E-value=8.7e-21  Score=155.90  Aligned_cols=182  Identities=19%  Similarity=0.207  Sum_probs=119.8

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+.............|+.+..  .....+|.|.+++.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~   80 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET   80 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCCh
Confidence            4666778888999999999999988878899999976432111111111100001245777654  44567899999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCc------------cccCCCceEEeecCceEEEEEEecccC--CCeEEEEe
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPI------------ISDNSTRSVIVSEGQTVYLYCYANGFP--APTISWRR  219 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~  219 (384)
                      +|+|.|+|.+.+...........|.|..++.            .....+....+.+|++++|.|.+.+.+  .+.+.|++
T Consensus        81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  160 (242)
T 2znx_A           81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR  160 (242)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred             HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence            9999999999755332233456777766542            111112224588999999999998765  46899998


Q ss_pred             CC--Cccc----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        220 DN--SAAL----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       220 ~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +.  ..+.                ...+....      ...|.|.+++.+|+|.|+|.+.+.
T Consensus       161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            53  2210                01111111      238999999999999999999873

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.87  E-value=1.9e-20  Score=158.17  Aligned_cols=199  Identities=15%  Similarity=0.212  Sum_probs=126.0

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+....+.+|++|+|.|.+.+.+  ...+.|++.........+.... .+..    ....+|+.+..+......+|.|.
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  106 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELS  106 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEEC
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEEC
Confidence            346678899999999999998755  5789999976432111111111 0100    01236776665434557899999


Q ss_pred             ecCCCCCeeEEEEEEEccCc----ceeeeEEEEEecC---------------CccccCCCceEEeecCceEEEEEEeccc
Q psy16652        150 EIQETDAGIYKCEVIISLNN----KVSAEVELIVRRP---------------PIISDNSTRSVIVSEGQTVYLYCYANGF  210 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~  210 (384)
                      +++.+|+|.|+|.+.+...+    .....+.|.|..+               +......+....+.+|++++|.|.+.+.
T Consensus       107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  186 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS  186 (291)
T ss_dssp             SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred             cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence            99999999999999865311    1223456777651               1111123456678999999999999887


Q ss_pred             CCC------eEEEEeCC--Ccccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652        211 PAP------TISWRRDN--SAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       211 ~~~------~v~W~~~~--~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      +.+      .+.|+++.  .....            ..+...    ....|.|.+++.+|+|.|+|.+.+..........
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  266 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT  266 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCE
Confidence            665      89999963  21110            111111    1237999999999999999999985322222234


Q ss_pred             EEEEEecCe
Q psy16652        267 AVEVEFAPV  275 (384)
Q Consensus       267 ~l~v~~~p~  275 (384)
                      .|.|+..+.
T Consensus       267 ~l~v~~~~~  275 (291)
T 2gki_A          267 KLEIKHHHH  275 (291)
T ss_dssp             EEEEECC--
T ss_pred             EEEEEeeEc
Confidence            555555443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.87  E-value=6.1e-21  Score=159.53  Aligned_cols=180  Identities=16%  Similarity=0.238  Sum_probs=123.5

Q ss_pred             CceEEeecCceEEEEEEec---ccCCCeEEEEeCCCccccc------------------CceeE------eccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYAN---GFPAPTISWRRDNSAALST------------------GGSIY------RGNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~---~~~~~~v~W~~~~~~~~~~------------------~~~~~------~~~~l~i~~~  242 (384)
                      +....+.+|+++.|.|.+.   +.+.+.+.|++.+......                  .+...      .+..|.|.++
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   91 (268)
T 3mj6_A           12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV   91 (268)
T ss_dssp             CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred             CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence            4567789999999999987   5666789999966533211                  11111      1257999999


Q ss_pred             CCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE---eccCCCeEEEEEC-CEEecCC
Q psy16652        243 TKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV---EAYPPPAIVWIKD-GVQIMNN  317 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~~-~~~~~~~  317 (384)
                      +.+|+|.|+|.+.+..+.. ....+.|.|.  |   ..+....+.+|+.+.|.|.+   .+.|.+.+.|+++ +......
T Consensus        92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~  166 (268)
T 3mj6_A           92 QKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEE  166 (268)
T ss_dssp             CGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCE
T ss_pred             CHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcce
Confidence            9999999999999865543 2444555443  2   12345667899999999999   6778999999994 3211110


Q ss_pred             -----------------Cceeeeee-eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652        318 -----------------QHYSVSHF-ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG  374 (384)
Q Consensus       318 -----------------~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  374 (384)
                                       .++..... ..........|.|.+++.+|+|.|+|.|.|..|....++.|.|...++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~  241 (268)
T 3mj6_A          167 TVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ  241 (268)
T ss_dssp             EEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             eEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCe
Confidence                             11100000 0001124678999999999999999999999999999999998665543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.87  E-value=1.9e-21  Score=157.36  Aligned_cols=184  Identities=16%  Similarity=0.242  Sum_probs=123.5

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCce-e---eeCCceEEeeCCCCceEEEE
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSL-I---IHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~L~  147 (384)
                      |.+..++ ...+.+|++|+|.|.+.+. +.+.+.|++.........+......+. .   ...+|+.+..  .....+|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~   78 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLS   78 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEE
Confidence            3555556 7789999999999999988 888999999654322222222111110 1   1235777665  55678899


Q ss_pred             EeecCCCCCeeEEEEEEEccC----cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652        148 IKEIQETDAGIYKCEVIISLN----NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW  217 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W  217 (384)
                      |.+++.+|+|.|+|.+.+..+    ......+.|.|..    +|.+.... .......|+.+.|.|.+.+ .|.+ .+.|
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~-~~~~~~~~~~v~L~C~~~g~~p~~~~v~W  157 (218)
T 3s96_B           79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP-PSSEELKENKATLVCLISNFSPSGVTVAW  157 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC-CCHHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC-CCcccccCCcEEEEEEECcccCCCeEEEE
Confidence            999999999999999987654    2344556787774    33332211 1122346789999999987 5666 8999


Q ss_pred             EeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ++++..+....         +.......|.|.....+|+|.|+|.|.|..+.
T Consensus       158 ~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~  209 (218)
T 3s96_B          158 KANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT  209 (218)
T ss_dssp             EETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred             EECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence            99987765421         11122345888888888999999999997643

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.87  E-value=4.7e-21  Score=154.18  Aligned_cols=172  Identities=16%  Similarity=0.283  Sum_probs=124.7

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------ccCceeE----eccEEEEcCCCCCCCeEEEEE
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------STGGSIY----RGNILKIPNITKTDRGTYYCV  253 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  253 (384)
                      ...+.+|+++.|.|.+.  +.+.+.|++..  ....            ...+...    ....|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            67789999999999998  77899999942  2211            0111111    134799999999999999999


Q ss_pred             EEeCCC-CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEECCEEecCCCceeeee-e
Q psy16652        254 AQNGVG-RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKDGVQIMNNQHYSVSH-F  325 (384)
Q Consensus       254 ~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~-~  325 (384)
                      +.+..+ ........|.|.    .+|.+...+....+..|+.++|.|.+.|.+  .+.+.|+++|..+.......... .
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  166 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ  166 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence            999876 233555677777    678887766666666899999999999853  46899999999886532111111 1


Q ss_pred             eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       326 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      ..+.....+.|.|..+..+|.|.|+|.|.|..+...+++.
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            1111122356889999889999999999999988777664

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=1.5e-20  Score=154.41  Aligned_cols=181  Identities=17%  Similarity=0.269  Sum_probs=123.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+...+....+.+|++|+|.|.+.+.+    .+.+.|+++........+.............|+.+..  .....+|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~   80 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIID   80 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEc
Confidence            456667778899999999999998876    7789999975332111111111000011245777765  4567789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc-----cccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCC-
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI-----ISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDN-  221 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~-  221 (384)
                      +++.+|+|.|+|.+.+..+........|.|..++.     .....+....+.+|+++.|.|.+.+.|.  +.+.|+++. 
T Consensus        81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~  160 (240)
T 1moe_A           81 PVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRP  160 (240)
T ss_dssp             SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             CCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECC
Confidence            99999999999999865433345566777776432     2212244567899999999999988763  589999963 


Q ss_pred             -Cccc-----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        222 -SAAL-----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       222 -~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                       ....                 ...+....      ...|.|.+++.+|+|.|+|.|.+
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          161 EQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             TSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence             2210                 00111111      14799999999999999999985

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.86  E-value=1.8e-20  Score=152.05  Aligned_cols=192  Identities=16%  Similarity=0.272  Sum_probs=124.6

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccC------ceeeeCCceEEeeCC-CCce
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSG------SLIIHDSRFQLTTDP-ETST  143 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~  143 (384)
                      ..++..+.+.+|++++|.|.+.+.+     ...+.|++++..     +.....+      ......+|+.+..+. ..+.
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~-----v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~   79 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKN-----IIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN   79 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEE-----EEEEETTEECSSSSCGGGSSSEEECHHHHTTTE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcE-----EEEEeCCccccccccccccCceEEccccccCCE
Confidence            3445566789999999999986544     348999997521     1111111      001123455544321 3456


Q ss_pred             EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCc
Q psy16652        144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA  223 (384)
Q Consensus       144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~  223 (384)
                      .+|.|.+++.+|+|.|+|.+.+  .+.....+.|.|..++..... .....+.+|+.+.|.|.+.|.|.+.+.|++++..
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~--~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~  156 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQ-RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ  156 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES--SSEEEEEEEEEEEBCCCCCEE-EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             EEEEEcCcccccCeEEEEEEEe--CCCceeEEEEEEECCCCCCCc-eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCc
Confidence            7899999999999999999985  455666788888866543311 1112567899999999999999999999998443


Q ss_pred             ccccCcee-E---ecc---EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652        224 ALSTGGSI-Y---RGN---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI  276 (384)
Q Consensus       224 ~~~~~~~~-~---~~~---~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~  276 (384)
                      ........ .   ...   ...+..+..+|+|.|+|.|.|..+.. ...+.|.|..+|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~p~~  215 (222)
T 3sbw_C          157 VLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE-NHTAELVIPELPLA  215 (222)
T ss_dssp             EECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECCCC---
T ss_pred             eecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccce-eeEEEEEecCCccc
Confidence            32221111 0   111   12222345689999999999998875 67788888766653

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.86  E-value=1.3e-22  Score=166.01  Aligned_cols=187  Identities=16%  Similarity=0.241  Sum_probs=102.1

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ...+.+...+....+.+|++|+|.|.+.+.+.+.+.|++++.......+............+|+.+..  .....+|.|.
T Consensus        21 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~   98 (233)
T 3bqu_C           21 GAETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIE   98 (233)
T ss_dssp             --CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC--
T ss_pred             ccceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEEC
Confidence            34566777788888999999999999988766789999976432111111111110011134444332  3345689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAA  224 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~  224 (384)
                      +++.+|+|.|+|.+.+..+........|.|..   +|.+....+. ....+|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus        99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  177 (233)
T 3bqu_C           99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  177 (233)
T ss_dssp             ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred             CCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence            99999999999999754432233334455543   3333221111 112369999999999874 443 79999998765


Q ss_pred             ccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        225 LST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       225 ~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ...           ++.......|.|.....+|+|.|+|.|.|...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            433           01112234788999989999999999998643

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.86  E-value=2.1e-21  Score=162.50  Aligned_cols=211  Identities=16%  Similarity=0.243  Sum_probs=122.3

Q ss_pred             eecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCC
Q psy16652         35 VTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKK  114 (384)
Q Consensus        35 ~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~  114 (384)
                      .+..|.+.|.|.+....+..             .....+.+...+..+.+.+|++|+|.|.+.+ +...+.|+|......
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~-------------~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~   68 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGS-------------GGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNE   68 (270)
T ss_dssp             --------------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCC
T ss_pred             chhhhHHHHHHHHhccCCcc-------------ccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCC
Confidence            45789999999876532211             1223456777788888999999999999865 667899999654322


Q ss_pred             CcccceeccCceeeeC---C-ceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEcc---CcceeeeEEEEEec------
Q psy16652        115 MEPLPISMSGSLIIHD---S-RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL---NNKVSAEVELIVRR------  181 (384)
Q Consensus       115 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------  181 (384)
                      ...+............   + |+.+... .....+|.|.+++.+|+|.|+|.+.+..   .......+.|.|..      
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~  147 (270)
T 3qib_D           69 FKFLINFQNQEVLQQIDMTEKRFSAECP-SNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVF  147 (270)
T ss_dssp             EEEEEEEETTEEEEECHHHHHHEEEECC-TTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCB
T ss_pred             cEEEEEECCCCceecCCccCCcEEEEeC-CCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccccc
Confidence            2222222111111111   1 7776653 4567899999999999999999997432   22333455677765      


Q ss_pred             CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc---------------CceeEeccEEEEcCCCC
Q psy16652        182 PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST---------------GGSIYRGNILKIPNITK  244 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~  244 (384)
                      +|.+....+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+...               .+.......|.|.....
T Consensus       148 ~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~  227 (270)
T 3qib_D          148 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW  227 (270)
T ss_dssp             CCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHH
T ss_pred             CCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence            2322211112222345999999999987 6666 89999998766432               12222234678888877


Q ss_pred             CC-CeEEEEEEEeCCCC
Q psy16652        245 TD-RGTYYCVAQNGVGR  260 (384)
Q Consensus       245 ~d-~G~Y~C~~~~~~~~  260 (384)
                      +| +|.|+|.+.|....
T Consensus       228 ~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          228 QNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             HSTTCEEEEEEEECCBC
T ss_pred             ccCCCeEEEEEEecCCC
Confidence            77 99999999986543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=5.1e-21  Score=156.51  Aligned_cols=171  Identities=12%  Similarity=0.169  Sum_probs=122.1

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEE
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVE  269 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~  269 (384)
                      .+.+|++++|.|.+.+ +...+.|+|++..+....   ........|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~   95 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   95 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence            6889999999999865 456899999987553211   11123457999999999999999999875332 225567777


Q ss_pred             EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      |..   +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+...  ..       .......|.|.+++.+|+
T Consensus        96 V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~--~~-------~~~~~~~l~I~~v~~~d~  164 (242)
T 1p6f_A           96 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ--RG-------YGKVQAEFPLGPVTTAHR  164 (242)
T ss_dssp             EECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE--EE-------ECSSEEEEEEEECCGGGC
T ss_pred             eecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc--cc-------CCCceEEEEeCCCccccC
Confidence            764   56666544 3567899999999999764 4699999998765431  00       112467899999999999


Q ss_pred             eEEEEEEEeCC---cceEEEEEEEEeeeecCCc
Q psy16652        347 GQYACKAANKY---GSAQKEIELFDRETQTGDE  376 (384)
Q Consensus       347 G~Y~C~a~n~~---g~~~~~~~l~v~~~~~~~~  376 (384)
                      |.|+|.|.|..   ...+..+.|.|.++++.|.
T Consensus       165 G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~  197 (242)
T 1p6f_A          165 GTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTS  197 (242)
T ss_dssp             EEEEEEEEEETTEECCCCCCEEEEEEC------
T ss_pred             EEEEEEEECCCCcccCCCCCEEEEEeccCCCCc
Confidence            99999999974   2445678888888765543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=1.7e-20  Score=154.82  Aligned_cols=182  Identities=16%  Similarity=0.287  Sum_probs=119.4

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+...+..+.+.+|++|+|.|.+.+.+     .+.+.|++.........+.............|+.+..  .....+|.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I   80 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI   80 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEE
Confidence            456667788899999999999998766     6899999975432111111111000001246777654  456678999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc------------cccCCCceEEeecCceEEEEEEecccC--CCe
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI------------ISDNSTRSVIVSEGQTVYLYCYANGFP--APT  214 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~  214 (384)
                      .+++.+|+|.|+|.+.+...........|.|..++.            .....+....+.+|++++|.|.+.+.+  .+.
T Consensus        81 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  160 (247)
T 1svz_A           81 SRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYS  160 (247)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSC
T ss_pred             CCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcE
Confidence            999999999999999755332233456677765421            111112334589999999999998764  468


Q ss_pred             EEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        215 ISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       215 v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +.|++++.  ...                 ...+....      ...|.|.+++.+|+|.|+|.+.|.
T Consensus       161 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          161 MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99999642  110                 01111111      248999999999999999999985

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.86  E-value=6.9e-21  Score=156.14  Aligned_cols=178  Identities=19%  Similarity=0.263  Sum_probs=123.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|+++.|.|.+.+.+.+.+.|++.......              ..+...    ....|.|.+++.+|+|.|+
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  110 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY  110 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence            4557789999999999998888889999984321100              111111    2347999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEE---EecCeEEecCCCcccccCCcEEEEEEEec-cC-CCeEEEEECCEEecCCC--ceeeee
Q psy16652        252 CVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQYDAILECHVEA-YP-PPAIVWIKDGVQIMNNQ--HYSVSH  324 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~--~~~~~~  324 (384)
                      |.+.+..+........+.|   ..+|.+...++......|+.++|.|.+.+ .| .+.+.|+++|..+....  ......
T Consensus       111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  190 (237)
T 3sob_L          111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD  190 (237)
T ss_dssp             EEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCC
T ss_pred             EeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccc
Confidence            9998866533333445555   45677776666666667889999999988 44 47999999999886532  111111


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      ...+.....+.|.|.....+|.|.|+|.|.|.......+..+.
T Consensus       191 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~  233 (237)
T 3sob_L          191 SKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN  233 (237)
T ss_dssp             TTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred             cCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeeee
Confidence            1111112245688999999999999999999987665554443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.86  E-value=8.4e-21  Score=153.30  Aligned_cols=177  Identities=20%  Similarity=0.264  Sum_probs=119.0

Q ss_pred             CceEEeecCceEEEEEEe-cccC-CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeE
Q psy16652        190 TRSVIVSEGQTVYLYCYA-NGFP-APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGT  249 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~-~~~~-~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~  249 (384)
                      +....+.+|+++.|.|.+ .+.+ .+.+.|++++.  .+.            ...+...    ....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            456778999999999995 4433 57899998542  110            0111111    12379999999999999


Q ss_pred             EEEEEEeCCC-CceeeEEEEEEE---ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeee
Q psy16652        250 YYCVAQNGVG-RGMKRNIAVEVE---FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVS  323 (384)
Q Consensus       250 Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~  323 (384)
                      |+|.+.+..+ ........|.|.   .+|.+...++......|+.++|.|.+.| .|++ .|.|+++|..+.........
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            9999999765 112233456665   4677766555444456889999999988 5554 89999999988654111111


Q ss_pred             --eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        324 --HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       324 --~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                        ....+.....+.|.|..+..+|.|.|+|.|.|..........+
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence              1111111123478999999999999999999998665544443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.86  E-value=2.6e-23  Score=178.78  Aligned_cols=237  Identities=9%  Similarity=0.041  Sum_probs=141.4

Q ss_pred             CCCCcchhccccCCCCCC-----CC--CCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652          3 APSPFDFVNRFQNTSTPW-----DP--STQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI   75 (384)
Q Consensus         3 ~~~~~w~~~~~~~~~~~~-----~~--~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   75 (384)
                      .+.+.|++|+.++.....     ..  .-.....|.|..+..+|+|.|.|.+.+........+.   .. .......|.+
T Consensus        40 ~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~---~~-~~~~~~~p~v  115 (323)
T 2wqr_A           40 TIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK---KC-ADSNPRGVSA  115 (323)
T ss_dssp             CEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC---CC-CCSSGGGCEE
T ss_pred             CeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeee---cC-CCCCCCCCEE
Confidence            367999999766543210     00  0011235777778888999999999875321110000   00 0011122333


Q ss_pred             -eeeCcceeeeccCcEEEEEEeecC-CCc---cEEEEEeCCCCCCcccceeccCcee--eeCCceEEeeCCCCceEEEEE
Q psy16652         76 -SYISQEQIKDIAQTADLKCSVQYA-DDY---PVIWMKMDTAKKMEPLPISMSGSLI--IHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        76 -~~~~~~~~v~~g~~v~l~C~~~~~-~~~---~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i  148 (384)
                       ...+....+.+|++++|.|.+.+. |.+   .+.|++++......      .....  ..++++.       ....|.|
T Consensus       116 ~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~------~~~~~~~~~~g~~~-------~~~~L~I  182 (323)
T 2wqr_A          116 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH------STRKEEKQRNGTLT-------VTSTLPV  182 (323)
T ss_dssp             EECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC------CCCEEEECTTSCEE-------EEEEEEC
T ss_pred             EEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc------ccCCCccCCCCCEE-------EEEEEEE
Confidence             333444557899999999999874 444   89999976432110      00000  1112222       2347999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEe------cCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVR------RPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRD  220 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~  220 (384)
                      .+++.+|+|.|+|.+.+...+.   ...+.+.      .+|.+........ ...|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus       183 ~~~~~~D~G~Y~C~a~n~~~~~---~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~  258 (323)
T 2wqr_A          183 GTRDWIEGETYQCRVTHPHLPR---ALMRSTTKTSGPRAAPEVYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHN  258 (323)
T ss_dssp             CHHHHHTTCCEEEEEECTTSSS---CEEEEECCCCSCCBCCEEEEEECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CHHHccCCCCEEEEEECCCCCC---CeeeEEEccCCCCCCCEEEEeCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEEC
Confidence            9999999999999998654322   2233332      2333322111111 123999999999987 4443 8999999


Q ss_pred             CCcccccC-----------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        221 NSAALSTG-----------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       221 ~~~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +..+....           +.....+.|.|..+..+|+|.|+|.|.|....
T Consensus       259 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          259 EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            88764321           11122357999999999999999999997665

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.86  E-value=5.6e-20  Score=152.61  Aligned_cols=198  Identities=20%  Similarity=0.250  Sum_probs=127.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCce---eeeCCceEEeeCCCCceEEEEE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSL---IIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ....+....+.+|++|+|.|.+.+.  +...+.|++.........+. +...+..   .....|+.+..+......+|.|
T Consensus        11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   90 (257)
T 3gkz_A           11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL   90 (257)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence            3445666779999999999999874  47789999965432211111 1111111   1124677777654566788999


Q ss_pred             eecCCCCCeeEEEEEEEcc---CcceeeeEEEEEecC-------------CccccCCCceEEeecCceEEEEEEecccCC
Q psy16652        149 KEIQETDAGIYKCEVIISL---NNKVSAEVELIVRRP-------------PIISDNSTRSVIVSEGQTVYLYCYANGFPA  212 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~~-------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  212 (384)
                      .+++.+|+|.|+|.+.+..   .........|.|..+             +......+....+.+|++++|.|.+.+.+.
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  170 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS  170 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence            9999999999999998642   122344567777654             112223345677899999999999988777


Q ss_pred             C-eEEEEeCC--Ccccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        213 P-TISWRRDN--SAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       213 ~-~v~W~~~~--~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      + .+.|++..  .....            ..+...    ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus       171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~  249 (257)
T 3gkz_A          171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR  249 (257)
T ss_dssp             GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence            7 89999843  22110            011111    1236999999999999999999875433222333455543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.86  E-value=1.4e-21  Score=160.03  Aligned_cols=186  Identities=14%  Similarity=0.182  Sum_probs=119.8

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCC-Cc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYAD-DY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ..+.+.. +....+.+|++++|.|.+.+.+ .. .+.|++++.......+.............|+.+..  .....+|.|
T Consensus        19 ~~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I   95 (234)
T 2j6e_L           19 AQSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAI   95 (234)
T ss_dssp             -CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEE
T ss_pred             cccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEE
Confidence            4445555 7778899999999999998743 33 69999976432111111111111111235676655  445678999


Q ss_pred             eecCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeC
Q psy16652        149 KEIQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRD  220 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~  220 (384)
                      .+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+....+. ....+|+.+.|.|.+.+. |+ +.+.|+++
T Consensus        96 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  174 (234)
T 2j6e_L           96 SGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFFPGAVTVAWKAD  174 (234)
T ss_dssp             ESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC-HHHHTTSCCCEEECCCBCSSCCCEEEEEET
T ss_pred             CCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCC-hhHhcCCceEEEEEEEEEcCCceEEEEEEC
Confidence            999999999999999876541  223344555532    2322211111 123458899999999874 44 38999999


Q ss_pred             CCcccccCc----------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        221 NSAALSTGG----------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       221 ~~~~~~~~~----------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +..+.....          .......|.|.++..+|+|.|+|.|.|....
T Consensus       175 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          175 GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            876643211          1112346889999999999999999997654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.6e-20  Score=155.74  Aligned_cols=178  Identities=19%  Similarity=0.228  Sum_probs=117.8

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      +....+.+|++|+|.|.+.+.  +...+.|+|.........+............+|+.+..  .....+|.|.+++.+|+
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDE   86 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhC
Confidence            445778999999999999876  67789999976432222222211111122346777755  44677899999999999


Q ss_pred             eeEEEEEEEccCc--ceeeeEEEEEecCCcc-------------------ccCCCceEEeecCceEEEEEEecccC--CC
Q psy16652        157 GIYKCEVIISLNN--KVSAEVELIVRRPPII-------------------SDNSTRSVIVSEGQTVYLYCYANGFP--AP  213 (384)
Q Consensus       157 G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~g~~~~l~C~~~~~~--~~  213 (384)
                      |.|+|.+.+..+.  .......|.|..++..                   ....+....+.+|++++|.|.+.+.+  .+
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  166 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY  166 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence            9999999865432  2334567777655421                   11112334588999999999998766  67


Q ss_pred             eEEEEeCCC--cccc-----------------cCceeE------eccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        214 TISWRRDNS--AALS-----------------TGGSIY------RGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       214 ~v~W~~~~~--~~~~-----------------~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      .+.|+++..  .+..                 ..+...      ....|.|.+++.+|+|.|+|.+.|..
T Consensus       167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            999998632  1100                 001111      12359999999999999999999853

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.86  E-value=8.4e-22  Score=158.71  Aligned_cols=173  Identities=18%  Similarity=0.338  Sum_probs=120.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------ccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------STGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|+++.|.|.+.+.+.+.+.|++++  ..+.            ...+...    ....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            45667899999999999988777789999854  2210            0111111    1237999999999999999


Q ss_pred             EEEEeCCCCc--eeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceeee
Q psy16652        252 CVAQNGVGRG--MKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSVS  323 (384)
Q Consensus       252 C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~  323 (384)
                      |.+.|.....  ......+.|.    .+|.+...++...+..|+.++|.|.+.|. |+ +.+.|+++|..+.........
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  165 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP  165 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence            9999732211  1223445553    56777665555556789999999999986 54 699999999998654321111


Q ss_pred             e-eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        324 H-FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       324 ~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      . ...+ ....+.|.|..++.+|+|.|+|.|.|..+..+.+
T Consensus       166 ~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (212)
T 1nfd_E          166 SKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS  205 (212)
T ss_dssp             BCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred             eecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence            1 0111 1124568999999999999999999998875443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.86  E-value=2.3e-20  Score=148.83  Aligned_cols=156  Identities=12%  Similarity=0.110  Sum_probs=112.9

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCC----Ccee
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMK  263 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~  263 (384)
                      ..+.+|++++|.|.+.+ +.+.+.|+|++..+.....     .......|.|.+++.+|+|.|+|.+.+...    ...+
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s   95 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS   95 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence            45789999999999974 6779999999876543211     012456899999999999999999986421    2234


Q ss_pred             eEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEee
Q psy16652        264 RNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       264 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      ..+.|.|..   +|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+++|..+.........  .  .......|.|.+
T Consensus        96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~--~--~~~~~~~L~i~~  169 (201)
T 1nkr_A           96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPK--V--NGTFQADFPLGP  169 (201)
T ss_dssp             CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEE--E--TTEEEEEEEEEE
T ss_pred             CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccc--c--CCceEEEEEeCC
Confidence            566777765   466665544 46789999999999987 56799999999766432211110  0  111256799999


Q ss_pred             cCCCCCeEEEEEEEeCC
Q psy16652        341 IERRQFGQYACKAANKY  357 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~  357 (384)
                      ++  |+|.|+|.|.+..
T Consensus       170 v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          170 AT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             CC--SCEEEEEEEEETT
T ss_pred             cC--CCeeEEEEEEcCC
Confidence            98  9999999999764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.86  E-value=3.8e-20  Score=147.54  Aligned_cols=166  Identities=16%  Similarity=0.167  Sum_probs=115.4

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+. ..+.+|++|+|.|.+.+ +...+.|+|++.......           ...+  ..  .......|.|.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-----------~~~~--~~--~~~~~~~l~I~   68 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR-----------LIGE--HH--DGVSKANFSIS   68 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE-----------EECE--EE--TTEEEEEEEES
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcce-----------eeee--cC--CCCceEEEEec
Confidence            45778877765 67899999999999864 667899999886521100           0000  00  12334579999


Q ss_pred             ecCCCCCeeEEEEEEEccC----cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652        150 EIQETDAGIYKCEVIISLN----NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS  222 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~  222 (384)
                      +++.+|+|.|+|.+.+...    ...+..+.|.|...   |.+... +. ..+.+|+.++|.|.+.+ +.+.+.|++++.
T Consensus        69 ~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~-p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~  145 (201)
T 1nkr_A           69 RMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ-PG-PTVLAGENVTLSCSSRS-SYDMYHLSREGE  145 (201)
T ss_dssp             SCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEE-SC-SEECTTCEEEEEEEESS-CCSEEEEEETTC
T ss_pred             cCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecC-CC-CccCCCCeEEEEEeCCC-CCceEEEEECCc
Confidence            9999999999999975432    23456677777653   333222 22 35789999999999976 567899999987


Q ss_pred             cccccCce-e----EeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        223 AALSTGGS-I----YRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       223 ~~~~~~~~-~----~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+...... .    .....|.|.+++  |+|.|+|.+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          146 AHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             SSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            66432111 1    125679999998  999999999875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.86  E-value=2.2e-20  Score=149.07  Aligned_cols=169  Identities=15%  Similarity=0.259  Sum_probs=117.2

Q ss_pred             eEEeecCceEEEEEEec----ccCCCeEEEEeCCCccccc------------Ccee---EeccEEEEcCCCCCCCeEEEE
Q psy16652        192 SVIVSEGQTVYLYCYAN----GFPAPTISWRRDNSAALST------------GGSI---YRGNILKIPNITKTDRGTYYC  252 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~----~~~~~~v~W~~~~~~~~~~------------~~~~---~~~~~l~i~~~~~~d~G~Y~C  252 (384)
                      .+.+.+|+++.|.|.+.    +.+.+.+.|++++..+...            .+..   .....|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            35688999999999985    3456789999988655210            0111   124589999999999999999


Q ss_pred             EEEeCCCCce----eeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeee
Q psy16652        253 VAQNGVGRGM----KRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSH  324 (384)
Q Consensus       253 ~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~  324 (384)
                      .+.+..+...    ...+.|.|..+   |.+...    ....|+.+.|.|.+. |+|.|.+.|+++|..+..... ....
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~-~~~~  157 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQ  157 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEEE
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccc-eEEe
Confidence            9999766543    34667777665   444332    123478899999995 899999999999998864422 1111


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                        ...........+..++.+|.|.|+|.|.|..|..++.+.+.
T Consensus       158 --~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~  198 (201)
T 1dr9_A          158 --DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN  198 (201)
T ss_dssp             --CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred             --cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence              10000011123345567899999999999999998887753

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.85  E-value=1.4e-20  Score=151.96  Aligned_cols=179  Identities=16%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             CcceeeeccCcEEEEEEeec-CC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQY-AD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      |....+.+|++|+|.|.+.+ .+ .+.+.|++++.......+.............|+.+..  .....+|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~   84 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDE   84 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccC
Confidence            56677899999999999544 32 5689999976432111111111111111245776655  45567899999999999


Q ss_pred             eeEEEEEEEccC-cceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc-C-
Q psy16652        157 GIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST-G-  228 (384)
Q Consensus       157 G~Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~-~-  228 (384)
                      |.|+|.+.+..+ ........|.|..   +|.+....+.. ....|+.+.|.|.+.+ .|.+ .+.|++++..+... . 
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  163 (216)
T 2xzc_L           85 ADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  163 (216)
T ss_dssp             EEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             EEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence            999999986544 2233445666653   33332211111 1235889999999987 5554 89999998766443 0 


Q ss_pred             ---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        229 ---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       229 ---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                               +.....+.|.|..+..+|+|.|+|.|.|....
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence                     01112237999999999999999999997544

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.85  E-value=4.7e-21  Score=154.32  Aligned_cols=181  Identities=15%  Similarity=0.193  Sum_probs=118.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +.. |....+.+|++++|.|.+.+.+   .+.+.|++++.......+.............|+.+..  ......|.|.++
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v   80 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGA   80 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCC
Confidence            444 7777899999999999998765   4689999975321111111110000011235666655  455678999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAAL  225 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~  225 (384)
                      +.+|+|.|+|.+.+..+........|.|..    +|.+....+. .....|+.+.|.|.+.+. |++ .+.|++++..+.
T Consensus        81 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  159 (212)
T 1q0x_L           81 QTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT  159 (212)
T ss_dssp             CGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence            999999999999865443334455676642    3333221111 123468899999999874 443 899999987664


Q ss_pred             ccCc----------eeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        226 STGG----------SIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       226 ~~~~----------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ....          .......|.|.....+|+|.|+|.|.|...
T Consensus       160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            3211          112234688999999999999999999643

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.85  E-value=4.6e-20  Score=153.46  Aligned_cols=185  Identities=16%  Similarity=0.293  Sum_probs=123.0

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCC------CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYAD------DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY  144 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (384)
                      ..+.+...|..+.+.+|++|+|.|.+.+.+      .+.+.|++.........+.............|+.+..  .....
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~   81 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDF   81 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEE
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEE
Confidence            345677778888999999999999998766      6789999975321111111111000001246777654  34567


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc------------------cccCCCceEEeecCceEEEEEE
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI------------------ISDNSTRSVIVSEGQTVYLYCY  206 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------------~~~~~~~~~~~~~g~~~~l~C~  206 (384)
                      +|.|.+++.+|+|.|+|.+.+.........+.|.|..++.                  +....+....+.+|++++|.|.
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  161 (264)
T 2gjj_A           82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCK  161 (264)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEE
Confidence            8999999999999999999754322233456777776531                  1111123346899999999999


Q ss_pred             ecccCC--CeEEEEeCCC--ccc------c-----------cCceeE------eccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        207 ANGFPA--PTISWRRDNS--AAL------S-----------TGGSIY------RGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       207 ~~~~~~--~~v~W~~~~~--~~~------~-----------~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +.+.+.  +.+.|+++..  ...      .           ..+...      ....|.|.+++.+|+|.|+|.+.|.
T Consensus       162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            987654  7899999642  111      0           111111      1348999999999999999999985

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.85  E-value=2.8e-20  Score=151.23  Aligned_cols=194  Identities=16%  Similarity=0.258  Sum_probs=121.7

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|+|.+.......+. +...+...    ...+|+.+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            5566789999999999998765  5789999976432111111 11111111    124688877654566789999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAAL  225 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~  225 (384)
                      +.+|+|.|+|.+.+.........+.|.|..    +|.+....+. ..+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  165 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG  165 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence            999999999999864322233445777764    2332221111 235679999999999874 766 999999886532


Q ss_pred             cc--C-----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652        226 ST--G-----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV  275 (384)
Q Consensus       226 ~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~  275 (384)
                      ..  .     +.....+.|.|..+..+| |.|+|.|.|..... .....+.+..+|.
T Consensus       166 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~-~~~~~~~~~~~p~  220 (227)
T 1mju_H          166 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTI  220 (227)
T ss_dssp             EEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE-EEEEECCCCCC--
T ss_pred             cEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc-ceEEEeCCCCCCC
Confidence            11  0     122234579999998888 99999999965543 4444555544443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=1.7e-20  Score=153.39  Aligned_cols=183  Identities=15%  Similarity=0.163  Sum_probs=127.7

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+.. .+.+|++|+|.|...+ +...+.|+|++....     ..        ..+    .........|.|
T Consensus         4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~-----~~--------~~~----~~~~~~~~~L~I   64 (242)
T 1p6f_A            4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFA-----VD--------RPK----PPERINKVKFYI   64 (242)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEE-----EE--------CCS----SCTTCCEEEEEE
T ss_pred             CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccc-----cc--------ccc----ccCCcceeEEEe
Confidence            3467888888877 8999999999999864 456899999764310     00        000    001234567999


Q ss_pred             eecCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652        149 KEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA  224 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~  224 (384)
                      .+++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+... + ...+.+|++++|.|.+.+. .+.+.|++++..+
T Consensus        65 ~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~-p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~  141 (242)
T 1p6f_A           65 PDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSS  141 (242)
T ss_dssp             CSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEE-S-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSC
T ss_pred             cCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEcc-C-CCccCCCCcEEEEEecCCC-CCEEEEEECCCcc
Confidence            999999999999999754322 345677888764   3333322 2 2357899999999998764 4699999998766


Q ss_pred             cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCC--CCceeeEEEEEEEec
Q psy16652        225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV--GRGMKRNIAVEVEFA  273 (384)
Q Consensus       225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~~  273 (384)
                      ............|.|.+++.+|+|.|+|.+.|..  ....+..+.|.|...
T Consensus       142 ~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          142 HVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             CccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            5321112234689999999999999999999864  223466778888764

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=7.1e-20  Score=143.88  Aligned_cols=161  Identities=20%  Similarity=0.391  Sum_probs=116.7

Q ss_pred             eeeeccCcEEEEEEeecCCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         82 QIKDIAQTADLKCSVQYADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ..+.+|++++|.|.+.+.+.+  .+.|++++....              ....       ......|.|.  +.+|+|.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~--------------~~~~-------~~~~~~l~i~--~~~d~G~Y   64 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLK--------------EDAL-------PGQKTEFKVD--SDDQWGEY   64 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEE--------------CTTC-------CCSEEEEEEC--GGGCCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEee--------------cccc-------cCCcEEEEEe--chhhCeEE
Confidence            457899999999999876554  899999764311              1110       1223356666  68999999


Q ss_pred             EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccC-CCeEEEEe---CCCccccc---CceeE
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRR---DNSAALST---GGSIY  232 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~---~~~~~~~~---~~~~~  232 (384)
                      +|.+.+    .....+.|.|..+|.+... +....+.+|+.+.|.|.+.+.| .+.+.|++   ++......   .....
T Consensus        65 ~C~~~n----~~~~~~~l~V~~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~  139 (184)
T 3b5h_A           65 SCVFLP----EPMGTANIQLHGPPRVKAV-KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV  139 (184)
T ss_dssp             EEEEES----TTSCEEEEEECCSCCCEES-CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEE
T ss_pred             EEEEEC----CcCcEEEEEEecCCceeec-CCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEE
Confidence            999985    2346678888888776644 3556789999999999999988 78999999   44433221   11111


Q ss_pred             -e---ccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        233 -R---GNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       233 -~---~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                       .   ...|.|.+++ .+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus       140 ~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  182 (184)
T 3b5h_A          140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVR  182 (184)
T ss_dssp             EEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EecCCeeEEEEeeccccccCceEEEEEEeCCCcc-eEEEEEEEe
Confidence             1   2389999999 899999999999998875 555667664

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.85  E-value=4.9e-20  Score=149.61  Aligned_cols=177  Identities=15%  Similarity=0.148  Sum_probs=125.2

Q ss_pred             CceEEeecCceEEEEEEecccCCC---eEEEEeCCCccccc----------------C-----------ceeEeccEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALST----------------G-----------GSIYRGNILKI  239 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~----------------~-----------~~~~~~~~l~i  239 (384)
                      ++.+.+..|+++.|.|.+.+.+.+   .+.|+|++......                .           .....+.+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            345668899999999999886665   48999987543210                0           00112357999


Q ss_pred             cCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCC
Q psy16652        240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQ  318 (384)
Q Consensus       240 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~  318 (384)
                      .+++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|++.+.|++++..+....
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~  167 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT  167 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence            9999999999999999977766566667777777776666666666677777777776 567888999999876553322


Q ss_pred             ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      ....  ...+.....+.|.|..++.+|+|.|+|.|+|..|....+..+.+
T Consensus       168 ~~~~--~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          168 QEPG--IQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             EEEC--SSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ceEE--ecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            1111  11111112356999999999999999999999988766555544

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.85  E-value=2.1e-20  Score=151.29  Aligned_cols=174  Identities=20%  Similarity=0.327  Sum_probs=117.2

Q ss_pred             ceEEeecCceEEEEEEecccC--CCeEEEEeCC--Ccccc-----------------cCceeEe------ccEEEEcCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAALS-----------------TGGSIYR------GNILKIPNIT  243 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~-----------------~~~~~~~------~~~l~i~~~~  243 (384)
                      ....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+..                 ..+....      ...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK   87 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence            345688999999999998765  5789999873  22210                 1111111      2489999999


Q ss_pred             CCCCeEEEEEEEeCCCCc---eeeEEEEEEEec----CeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEe
Q psy16652        244 KTDRGTYYCVAQNGVGRG---MKRNIAVEVEFA----PVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQI  314 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~  314 (384)
                      .+|+|.|+|.+.+..+..   ......|.|...    |.+...++...+..|+.+.|.|.+.| +|.| .|.|+++|..+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  167 (219)
T 1c1e_H           88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  167 (219)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             cccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence            999999999999975321   123456666653    66655555556678999999999998 8998 99999998764


Q ss_pred             cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .........  ..+.....+.|.|..... |.|.|+|.|.|..|.......|.
T Consensus       168 ~~~~~~~~~--~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          168 GVHTFPAVL--QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             TEEECCCEE--SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEECC
T ss_pred             ceEecCCcc--cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEecC
Confidence            211000000  011111235688844444 56999999999998876665554

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.85  E-value=1.8e-21  Score=155.28  Aligned_cols=154  Identities=22%  Similarity=0.334  Sum_probs=110.1

Q ss_pred             eecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe--
Q psy16652        195 VSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF--  272 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--  272 (384)
                      +.+|+++.|.|.+   |.+.+.|++++..+...   ...+..|.|.+++.+|+|.|+|.+.+..    +..+.|.+..  
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~   84 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGS   84 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC--
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEec
Confidence            4689999999998   67899999998766432   1134679999999999999999975432    2224444430  


Q ss_pred             -----------------------------cCeEEecCCCcccc-cCCcEEEEEEEeccCCCeEEEEECCEEecCCCc-ee
Q psy16652        273 -----------------------------APVITINRPRQGQA-LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH-YS  321 (384)
Q Consensus       273 -----------------------------~p~~~~~~~~~~~~-~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~  321 (384)
                                                   ++.+. ..+ ..+. +|+.++|.|.  +.|.|.+.|+++|..+....+ ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~  160 (204)
T 1sy6_A           85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-QTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN  160 (204)
T ss_dssp             -----------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTT
T ss_pred             ccccccccccccccccccccccccccccccccee-cCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCce
Confidence                                         11111 112 2334 8999999999  789999999999998865422 11


Q ss_pred             eeeeeccCccccceEEEeec-CCCCCeEEEEEEEeCCcce-EEEEEEEEe
Q psy16652        322 VSHFATSDEFSDTSLRVITI-ERRQFGQYACKAANKYGSA-QKEIELFDR  369 (384)
Q Consensus       322 ~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  369 (384)
                      +..       ....|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.++
T Consensus       161 ~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          161 IGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             EEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             Eec-------CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            111       3678999999 9999999999999999963 456666553

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.85  E-value=6e-20  Score=145.24  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=111.9

Q ss_pred             CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCccc---ccC---------------ce-eEeccEEEEcCCCCCCCeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAAL---STG---------------GS-IYRGNILKIPNITKTDRGT  249 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~---~~~---------------~~-~~~~~~l~i~~~~~~d~G~  249 (384)
                      +..+.+.+|+++.|.|.+.+ .+.+.+.|++++..+.   ...               +. ...+..|.|.+++.+|+|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            45677899999999999865 4456899999865331   000               10 1124679999999999999


Q ss_pred             EEEEEEeCCCCceeeEEEEEEEecC---eEEecCCCcccccCC-cEEEEEEEecc-CCCeEEEEECCEEecCCCceeeee
Q psy16652        250 YYCVAQNGVGRGMKRNIAVEVEFAP---VITINRPRQGQALQY-DAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSH  324 (384)
Q Consensus       250 Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~  324 (384)
                      |+|.+.+..+.. ...+.|.|..++   .+....  .....|. .++|.|.+.+. |.|.+.|+++|..+..        
T Consensus        85 Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~--------  153 (193)
T 2if7_A           85 YRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS--------  153 (193)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------
T ss_pred             EEEEEEecCCCe-EEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------
Confidence            999999887654 457788887654   333222  1223454 79999999985 5789999999986632        


Q ss_pred             eeccCccccceEEEeecCCC-CCeEEEEEEEeCCcceEEEEE
Q psy16652        325 FATSDEFSDTSLRVITIERR-QFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                              ...|.|.....+ |.|.|+|.|.|..|..+..+.
T Consensus       154 --------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          154 --------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             --------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             --------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence                    234666554444 899999999999998866543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.85  E-value=1.4e-20  Score=155.22  Aligned_cols=186  Identities=16%  Similarity=0.232  Sum_probs=124.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceec--cCceee---eCCceEEeeCCCCceEEEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM--SGSLII---HDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+...+..+.+.+|++|+|.|.+.+.+...+.|+|.........+....  ......   ..+|+.+..+ ....++|.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I   81 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTV   81 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEE
Confidence            4666777888999999999999988888899999965432222222222  111111   1257777653 345789999


Q ss_pred             eecCCCCCeeEEEEEEEccC---cceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecccCCC--eEEE
Q psy16652        149 KEIQETDAGIYKCEVIISLN---NKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISW  217 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W  217 (384)
                      .+++.+|+|.|+|.+.+..+   ........|.|..      +|.+....+....+.+|+.+.|.|.+.+.+++  .+.|
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            99999999999999975422   1233455677764      23222222222234569999999999885554  8999


Q ss_pred             EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  260 (384)
                      ++++..+...               .+.......|.|.....+| +|.|+|.|.|....
T Consensus       162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            9988766432               1122223458888888888 99999999996544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.85  E-value=1e-20  Score=153.78  Aligned_cols=183  Identities=19%  Similarity=0.296  Sum_probs=118.8

Q ss_pred             CceEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----c------------cCceeE------eccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----S------------TGGSIY------RGNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----~------------~~~~~~------~~~~l~i~~~  242 (384)
                      +....+.+|++++|.|.+.+.+  .+.+.|++.+.  ...     .            ..+...      ....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            3456789999999999998765  57899998642  110     0            111111      1248999999


Q ss_pred             CCCCCeEEEEEEEeCCCCceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecC
Q psy16652        243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMN  316 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~  316 (384)
                      +.+|+|.|.|.+.+...........|.|..    +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++..+..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~  166 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV  166 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence            999999999999985322112334666653    4665554444456689999999999985 776 9999999876421


Q ss_pred             CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      .......  ..+.....+.|.|...+.+| |.|+|.|.|..+.......+.+.++|..|
T Consensus       167 ~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~  222 (227)
T 1mju_H          167 HTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  222 (227)
T ss_dssp             EECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred             EECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence            1000000  11111234678898888888 99999999998888888888888886554

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.85  E-value=9.7e-20  Score=147.30  Aligned_cols=182  Identities=15%  Similarity=0.289  Sum_probs=122.5

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|+|.........+..... +..    ....+|+.+..+...+..+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4557789999999999998754  56899999764321111111111 000    0124688887755567789999999


Q ss_pred             CCCCCeeEEEEEEEccCc--ceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEeccc-CC--CeEEEEeCCC
Q psy16652        152 QETDAGIYKCEVIISLNN--KVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGF-PA--PTISWRRDNS  222 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~v~W~~~~~  222 (384)
                      +.+|+|.|+|.+.+....  .....+.|.|...    |.+....  ...+.+|+.+.|.|.+.+. |.  +.+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence            999999999999865332  1234467777642    2222111  1124689999999999875 66  6999999987


Q ss_pred             cccc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652        223 AALS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM  262 (384)
Q Consensus       223 ~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  262 (384)
                      .+..        ..+.....+.|.|.....+|+|.|+|.|.|..+...
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            6521        111122234689998888999999999999877653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.85  E-value=1.6e-20  Score=153.30  Aligned_cols=174  Identities=21%  Similarity=0.275  Sum_probs=118.4

Q ss_pred             eCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC----------CCCceEEE
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD----------PETSTYIL  146 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~L  146 (384)
                      .+....+.+|+++.|.|.+.+.+. +.+.|++++.......+. .    .......+..+..          ... ...|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~----~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L   79 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLA-S----AEMQGSELQVTMHDTRGRSPPYQLDS-QGRL   79 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEE-E----EEEETTEEEEEECCCSCCSSCCEECT-TCCE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEE-e----ccccCCccccccccccccccccccCC-CceE
Confidence            356677899999999999988774 899999987653211111 0    0011111111111          011 1239


Q ss_pred             EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc--CCCceEEeecCceE-EEEEEe-cccCCCeEEEEeCCC
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD--NSTRSVIVSEGQTV-YLYCYA-NGFPAPTISWRRDNS  222 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~~~g~~~-~l~C~~-~~~~~~~v~W~~~~~  222 (384)
                      .|.+++.+|+|.|+|.+.+...+..+..+.|.|..+|....  ..+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus        80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~  159 (231)
T 2pet_A           80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ  159 (231)
T ss_dssp             EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred             EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence            99999999999999999876646677788888887754322  12233445688887 999999 889999999999988


Q ss_pred             cccccC----ceeEe-------------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        223 AALSTG----GSIYR-------------GNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       223 ~~~~~~----~~~~~-------------~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+....    .....             .+.|.|.....+|+|.|+|.|.|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            765544    11111             156888766666799999999994

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.85  E-value=2.4e-20  Score=154.27  Aligned_cols=172  Identities=20%  Similarity=0.307  Sum_probs=118.5

Q ss_pred             CceEEeecCceEEEEEEecccC-----CCeEEEEeCCCcccc--------------cCceeEe----ccEEEEcCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNSAALS--------------TGGSIYR----GNILKIPNITKTD  246 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~~~~--------------~~~~~~~----~~~l~i~~~~~~d  246 (384)
                      +....+.+|++++|.|.+.+.+     .+.+.|++++.....              ..+....    ...|.|.+++.+|
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            4556789999999999998876     578999996521100              1111111    1279999999999


Q ss_pred             CeEEEEEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCcee
Q psy16652        247 RGTYYCVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYS  321 (384)
Q Consensus       247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~  321 (384)
                      +|.|+|.+.+..+........|.|..   +|.+...++...+..|+.++|.|.+.| .|++ .+.|+++|..+.......
T Consensus       121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  200 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  200 (252)
T ss_dssp             CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEE
T ss_pred             CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeee
Confidence            99999999987553323334566653   577766555545567899999999988 4544 799999999886541111


Q ss_pred             eee--eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        322 VSH--FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       322 ~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ...  ...+.....+.|.|..+..+|.|.|+|.|.|......
T Consensus       201 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p  242 (252)
T 3bkj_L          201 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  242 (252)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             cCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence            111  1111112235689999999999999999999876643

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.85  E-value=2e-20  Score=156.29  Aligned_cols=188  Identities=18%  Similarity=0.249  Sum_probs=124.7

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee----CCceEEeeCCCCceEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----DSRFQLTTDPETSTYIL  146 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L  146 (384)
                      ..+.+...+..+.+.+|++|+|.|.+. .+...+.|+|.........+...........    .+|+.+..+ ..+..+|
T Consensus        25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL  102 (268)
T 3pl6_D           25 GGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTL  102 (268)
T ss_dssp             --SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEE
T ss_pred             cCceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEE
Confidence            345677777788899999999999986 4667899999654322222222222111111    167877764 4567899


Q ss_pred             EEeecCCCCCeeEEEEEEEc-cCcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecccCC-C-eEEE
Q psy16652        147 SIKEIQETDAGIYKCEVIIS-LNNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGFPA-P-TISW  217 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~-~v~W  217 (384)
                      .|.+++.+|+|.|+|.+.+. ..........|.|..      +|.+....+....+.+|+.++|.|.+.+.++ + .+.|
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  182 (268)
T 3pl6_D          103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  182 (268)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence            99999999999999999853 223344555677765      2332222222233456899999999988544 4 8999


Q ss_pred             EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  260 (384)
                      ++++..+...               .+.......|.|.....+| +|.|+|.+.|....
T Consensus       183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            9998776432               1222223567888887777 99999999986443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.85  E-value=2.3e-20  Score=154.06  Aligned_cols=194  Identities=16%  Similarity=0.284  Sum_probs=118.8

Q ss_pred             CcceeeeccCcEEEEEEeecCCCcc-----EEEEEeCCCCCCcccceecc-CceeeeCCceEEee-CCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYP-----VIWMKMDTAKKMEPLPISMS-GSLIIHDSRFQLTT-DPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++++|.|.+.+.+...     +.|++++.........+... ........+..+.. ....+..+|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            4455689999999999998766554     99999875533222222111 11111111111110 11334567999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCcccc---
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALS---  226 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~---  226 (384)
                      +.+|+|.|+|.+.+.. +.....+.|.|..+|.+.....  ..+..|+.+.|.|.+.+ .|.+ .+.|++++..+..   
T Consensus        90 ~~~D~G~Y~C~~~~~~-~~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTP-LKAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             CGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred             CHHHCeEEEEEEEeCC-ccceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence            9999999999998654 4456678888888776554322  23456778889999988 7888 9999999864321   


Q ss_pred             -------------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEEEEecCeE
Q psy16652        227 -------------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEFAPVI  276 (384)
Q Consensus       227 -------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~  276 (384)
                                   ..+.......|.|.....+|+|.|+|.|.|..+. ..+..+.|.| ..|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V-~~p~~  229 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA-ARHSL  229 (248)
T ss_dssp             ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--------
T ss_pred             cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE-cCCCC
Confidence                         1122223457888899999999999999997765 3455666676 34443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.84  E-value=1e-20  Score=153.42  Aligned_cols=194  Identities=22%  Similarity=0.328  Sum_probs=122.1

Q ss_pred             cceeeeccCcEEEEEEeecCCC-----ccEEEEEeCCCCCCcccceeccCce--eeeCCceEEeeCC-CCceEEEEEeec
Q psy16652         80 QEQIKDIAQTADLKCSVQYADD-----YPVIWMKMDTAKKMEPLPISMSGSL--IIHDSRFQLTTDP-ETSTYILSIKEI  151 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~L~i~~~  151 (384)
                      .++.+.+|++++|.|.+.+.+.     ..+.|++++...   .+.....+..  ....+|+.+..+. ..+..+|.|.++
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~---~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   79 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQ---LVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRV   79 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCC---EEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSC
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCcc---EEEEEcCCcccccceeCcEEEecccccCCeEEEEECCc
Confidence            3456789999999999877543     689999987542   1111111111  1123444443211 223567999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALST  227 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~  227 (384)
                      +.+|+|.|+|.+.+..  ..+..+.|.|..+   |.+..  .....+.+|+.+.|.|.+ .+.|.+.+.|++++......
T Consensus        80 ~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~--~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~  155 (222)
T 4i0k_A           80 RVTDEGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTL--EPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTG  155 (222)
T ss_dssp             CGGGCSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEEC--CC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCS
T ss_pred             ccccCEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEe--CCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCC
Confidence            9999999999998643  3344555666544   33322  223357789999999999 78899999999954433322


Q ss_pred             Ccee-E---ec---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC
Q psy16652        228 GGSI-Y---RG---NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP  281 (384)
Q Consensus       228 ~~~~-~---~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~  281 (384)
                      .... .   ..   ..|.|.++..+|+|.|+|.+.|..+.. ...+.|.|..+|....+..
T Consensus       156 ~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~  215 (222)
T 4i0k_A          156 NVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQ-DAHGSVTITGQPLTFPPET  215 (222)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECCC---------
T ss_pred             CcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCC-ceEEEEEEeCCccccCCcc
Confidence            1111 1   11   247899999999999999999998875 7788899988886554433

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.84  E-value=3e-21  Score=154.67  Aligned_cols=165  Identities=14%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             eecCceEEEEEEecccC---C-CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        195 VSEGQTVYLYCYANGFP---A-PTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~~---~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.+|+++.|.|.+.+.+   . ..+.|++++..+...         .+.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998764   2 489999988654321         1112223579999999999999999999977653


Q ss_pred             -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652        262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (384)
                       ....+.+  .+..+|.+.+.+.......|+.+.|.|.+.|. |++ .+.|+++|..+.............+.....+.|
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l  174 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKL  174 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEE
Confidence             2233433  45678888766555444568999999999984 553 899999999875322111111111112223446


Q ss_pred             EEeecCCCCCeEEEEEEEeCCcc
Q psy16652        337 RVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      .|.....+|.|.|+|.|.|....
T Consensus       175 ~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          175 NVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EECHHHcCCCCEEEEEEECCCCC
Confidence            67766677899999999998654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=7.9e-20  Score=150.57  Aligned_cols=172  Identities=10%  Similarity=0.092  Sum_probs=122.7

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCC----Ccee
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMK  263 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~  263 (384)
                      ..+.+|++++|.|.+.+ +.+.+.|+|++..+.....     .......|.|.+++.+|+|.|+|.+.+...    ...+
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S   94 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS   94 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred             CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence            45889999999999975 4678999999876532111     112456799999999999999999986422    2235


Q ss_pred             eEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEee
Q psy16652        264 RNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       264 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      ..+.|.|..   +|.+...+. ..+.+|+.++|.|.+.+. .+.|.|+++|..+.........    ........|.|.+
T Consensus        95 ~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~----~~~~~~~~l~I~~  168 (257)
T 1b6u_A           95 DPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPK----VNGTFQADFPLGP  168 (257)
T ss_dssp             CCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCC----SSSCCBEEEEEEE
T ss_pred             CCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccc----cCCceeEEEEecc
Confidence            567777765   456665443 467899999999999875 4699999999776433221110    0111356799999


Q ss_pred             cCCCCCeEEEEEEEeCCc-----ceEEEEEEEEeeeec
Q psy16652        341 IERRQFGQYACKAANKYG-----SAQKEIELFDRETQT  373 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~  373 (384)
                      ++  |+|.|+|.|.|...     ..+..+.|.|.++|.
T Consensus       169 v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          169 AT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             CC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             cc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            98  99999999997632     334568888888754

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.84  E-value=8.4e-21  Score=147.68  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             eeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         82 QIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +.+.+|++|+|.|...+  .+.+.+.|++++...    .............+|+.+..+     .+|.|.+++.+|+|.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i----~~~~~~~~~~~~~~r~~~~~~-----gsL~I~~v~~~D~G~Y   76 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLV----AEFKRKMKPFLKSGAFEILAN-----GDLKIKNLTRDDSGTY   76 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEE----EEEETTSCCEESSTTEEECTT-----SCEEESSCCGGGCEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCcee----EEEcCCCeecCCCCeEEECCC-----CcEEEcccccccCEEE
Confidence            45789999999995433  456689999976421    001111111233567766331     2499999999999999


Q ss_pred             EEEEEEccCcc-eeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEE
Q psy16652        160 KCEVIISLNNK-VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK  238 (384)
Q Consensus       160 ~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~  238 (384)
                      +|.+.+..+.. .+..+.|.|..++..     + .....+..+.|.|.+.+.|.+.+.|++++..+....       .+.
T Consensus        77 ~C~~~n~~g~~~~~~~~~l~V~~~~~~-----p-~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~  143 (176)
T 1hng_A           77 NVTVYSTNGTRILNKALDLRILEMVSK-----P-MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKT  143 (176)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEECCCCC-----C-EEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-------SSE
T ss_pred             EEEEEeCCCCEEEEEEEEEEEeCCCCC-----C-EEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC-------cEE
Confidence            99998766543 466677888764321     1 222345569999999998999999999887654332       245


Q ss_pred             EcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        239 IPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       239 i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      |..+..+|+|.|+|.|.|..|..
T Consensus       144 i~~~~~~d~G~Y~C~a~N~~g~~  166 (176)
T 1hng_A          144 MSYQWTNLRAPFKCKAVNRVSQE  166 (176)
T ss_dssp             EEEECSCCSSCEEEEEEETTEEE
T ss_pred             EEEEEccCCeEEEEEEEecCCCc
Confidence            55778999999999999988765

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.84  E-value=8.2e-20  Score=152.50  Aligned_cols=185  Identities=17%  Similarity=0.295  Sum_probs=119.5

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI  145 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (384)
                      ..+.+...+..+.+.+|++|+|.|.+.+.+     ...+.|++.........+.............|+.+..  .....+
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~   91 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFT   91 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEE
Confidence            456777778888899999999999997765     4789999976432111111111100001246777654  445678


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc----------------------cccCCCceEEeecCceEEE
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI----------------------ISDNSTRSVIVSEGQTVYL  203 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~----------------------~~~~~~~~~~~~~g~~~~l  203 (384)
                      |.|.+++.+|+|.|+|.+.+...........|.|..++.                      +....+....+.+|++++|
T Consensus        92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL  171 (268)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred             EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence            999999999999999999754322233345566654321                      0111123467889999999


Q ss_pred             EEEecccCC--CeEEEEeCC--Cccc-------------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEE
Q psy16652        204 YCYANGFPA--PTISWRRDN--SAAL-------------------STGGSIYR------GNILKIPNITKTDRGTYYCVA  254 (384)
Q Consensus       204 ~C~~~~~~~--~~v~W~~~~--~~~~-------------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~  254 (384)
                      .|.+.+.+.  +.+.|++..  ..+.                   ...+....      ...|.|.+++.+|+|.|+|.+
T Consensus       172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a  251 (268)
T 1x9q_A          172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG  251 (268)
T ss_dssp             EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            999987653  689999853  2110                   01111111      247999999999999999999


Q ss_pred             EeC
Q psy16652        255 QNG  257 (384)
Q Consensus       255 ~~~  257 (384)
                      .+.
T Consensus       252 ~~~  254 (268)
T 1x9q_A          252 ASY  254 (268)
T ss_dssp             EET
T ss_pred             ccC
Confidence            874

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.84  E-value=1.5e-19  Score=146.47  Aligned_cols=181  Identities=16%  Similarity=0.290  Sum_probs=121.9

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC---c----eeeeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG---S----LIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|++.........+......   .    .....+|+.+..+.....++|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            4556789999999999998643  568999997644222211111110   0    111347888876555678899999


Q ss_pred             ecCCCCCeeEEEEEEEccC-cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCC-C-eEEEEeCC
Q psy16652        150 EIQETDAGIYKCEVIISLN-NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-P-TISWRRDN  221 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~-~v~W~~~~  221 (384)
                      +++.+|+|.|+|.+.+... ........|.|..    +|.+....+...  .+|+.+.|.|.+.+ .|. + .+.|++++
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g  164 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESG  164 (221)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCS
T ss_pred             CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECC
Confidence            9999999999999986532 2344456677752    222221111111  58999999999987 665 4 89999988


Q ss_pred             Ccccc---------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        222 SAALS---------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       222 ~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ..+..         ..+.....+.|.|.....+|+|.|+|.|.|..+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          165 QGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             TTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            76621         22223334569999999999999999999976553

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.84  E-value=7.9e-20  Score=151.37  Aligned_cols=178  Identities=17%  Similarity=0.261  Sum_probs=122.9

Q ss_pred             CceEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc-----------------ccCceeEe------ccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL-----------------STGGSIYR------GNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~  242 (384)
                      +....+.+|++++|.|.+.+.+  .+.+.|++++  ..+.                 ...+....      ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            3446789999999999998765  5689999853  2110                 01122111      247999999


Q ss_pred             CCCCCeEEEEEEEeCCCC----ceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC-----eEEEEE--CC
Q psy16652        243 TKTDRGTYYCVAQNGVGR----GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-----AIVWIK--DG  311 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~v~W~~--~~  311 (384)
                      +.+|+|.|+|.+.+..+.    .....+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+     .+.|++  +|
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g  166 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPG  166 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTT
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCC
Confidence            999999999999997552    1233467778777777666666778999999999999998775     999999  55


Q ss_pred             EEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEEEEeeee
Q psy16652        312 VQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIELFDRETQ  372 (384)
Q Consensus       312 ~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~  372 (384)
                      ..+.            ...++....     .....+|+|.+++.+|+|.|+|.|.|..+.. .....|.|..++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          167 QSPKLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             SCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             CCcEEEEEEeCCCCCccCCcEEEEc-----cCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence            4331            012332211     1134579999999999999999999854322 123456665443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.84  E-value=4.8e-20  Score=149.48  Aligned_cols=181  Identities=18%  Similarity=0.279  Sum_probs=120.4

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC----ce---eeeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG----SL---IIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +....+.+|++++|.|.+.+.+  ...+.|++.........+......    ..   ....+|+.+..+...+..+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            4456789999999999998754  678999997643211111111110    00   01246788776544567899999


Q ss_pred             ecCCCCCeeEEEEEEEccCc----ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEe
Q psy16652        150 EIQETDAGIYKCEVIISLNN----KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRR  219 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~  219 (384)
                      +++.+|+|.|+|.+.+..+.    .......|.|..    +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECC-CSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccc-cccccCCCcEEEEEEEccEECCCCEEEEec
Confidence            99999999999999754421    223345677764    232221111 1124579999999999884 877 999999


Q ss_pred             CCCccccc-------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        220 DNSAALST-------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       220 ~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ++..+...       .+.....+.|.|..+..+| |.|+|.|.|..+..
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  213 (222)
T ss_dssp             GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence            88754321       1112223478999999899 99999999987753

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=2.8e-19  Score=146.84  Aligned_cols=186  Identities=19%  Similarity=0.315  Sum_probs=122.5

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L  146 (384)
                      .+...+..+.+.+|++|+|.|.+.+.  +...+.|+|.........+.........     ...+|+.+..+...+..+|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            35556677789999999999999875  5678999997643221222221111110     1457888776544468899


Q ss_pred             EEeecCCCCCeeEEEEEEEccCc------ceeeeEEEEEecC-------CccccCCCceEEeecCceEEEEEEeccc-CC
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNN------KVSAEVELIVRRP-------PIISDNSTRSVIVSEGQTVYLYCYANGF-PA  212 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~~~l~v~~~-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~  212 (384)
                      .|.+++.+|+|.|+|.+.+...+      .....+.|.|...       |......+....+.+|+.+.|.|.+.+. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            99999999999999999865311      1233567777653       2222221222335579999999999875 64


Q ss_pred             -CeEEEEeCCC-ccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        213 -PTISWRRDNS-AALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       213 -~~v~W~~~~~-~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                       +.+.|++++. .+...        .+.......|.|..... + |.|+|.+.|..+..
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN  219 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence             6899999986 44221        11122234788887765 4 99999999987654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.84  E-value=1e-19  Score=151.13  Aligned_cols=185  Identities=15%  Similarity=0.215  Sum_probs=111.1

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceec-cCceeee----CCceEEeeCCCCceEEE
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM-SGSLIIH----DSRFQLTTDPETSTYIL  146 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~L  146 (384)
                      +|.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+.... .......    .+++....+......+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            355667777888999999999999988777899999965432222222111 1111111    12333333334566789


Q ss_pred             EEeecCCCCCeeEEEEEEEccCc--ceeeeEEEEEecCC----------------ccccCCCceEEeecCceEEEEEEec
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP----------------IISDNSTRSVIVSEGQTVYLYCYAN  208 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~----------------~~~~~~~~~~~~~~g~~~~l~C~~~  208 (384)
                      .|.+++.+|+|.|+|.+.+..+.  .......|.|..++                ......+....+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            99999999999999999865432  34445667776531                1112335567889999999999987


Q ss_pred             cc-CCCeEEEEeCCCcccc--------------cCceeE------eccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        209 GF-PAPTISWRRDNSAALS--------------TGGSIY------RGNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       209 ~~-~~~~v~W~~~~~~~~~--------------~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                      +. +.+.+.|++.......              ..+...      ....|.|.+++.+|+|.|+|.+.+
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            63 6789999985421110              011111      123699999999999999999985

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.84  E-value=7.7e-20  Score=147.41  Aligned_cols=165  Identities=18%  Similarity=0.319  Sum_probs=114.7

Q ss_pred             CceEEeecCceEEEEEEeccc-------CCCeEEEEeCCCcc-----c------------ccCceeE------eccEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF-------PAPTISWRRDNSAA-----L------------STGGSIY------RGNILKI  239 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~-------~~~~v~W~~~~~~~-----~------------~~~~~~~------~~~~l~i  239 (384)
                      +..+.+.+|+++.|.|.+.+.       +.+.+.|++++...     .            ...+...      ....|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            556778999999999998653       46689999986531     0            0011111      1237999


Q ss_pred             cCCCCCCCeEEEEEEEeCCCCce---eeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEecc----CCCeEEEEE
Q psy16652        240 PNITKTDRGTYYCVAQNGVGRGM---KRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAY----PPPAIVWIK  309 (384)
Q Consensus       240 ~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~v~W~~  309 (384)
                      .+++.+|+|.|+|.+.+..+...   ...+.|.|..   +|.+...   ..+.+|+.++|.|.+.+.    |.|.+.|++
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~---~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~  163 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL---EPLESGRPTRLSCSLPGSCEAGPPLTFSWTG  163 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEES
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC---ccccCCCeEEEEEEeccCCCCCCCceEEEeC
Confidence            99999999999999998653211   2457777776   3444432   236789999999999774    788999999


Q ss_pred             CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc--eEEEEEEEE
Q psy16652        310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS--AQKEIELFD  368 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v  368 (384)
                      ++..+....           ....+.|.|..+..+|.|.|+|.|.|..+.  .+.++.|.|
T Consensus       164 ~~~~~~~~~-----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          164 NALSPLDPE-----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             STTSSSCSS-----------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             CCCccCCCC-----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            985432111           124678999999999999999999998654  455555544

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.84  E-value=3.9e-21  Score=157.19  Aligned_cols=170  Identities=19%  Similarity=0.332  Sum_probs=97.4

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCce----eEeccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGS----IYRGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~----~~~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|+++.|.|.+.+.+.+.+.|++++.....              ..+.    ......|.|.+++.+|+|.|+
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  109 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY  109 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence            3445678999999999998877778999986421100              0111    112337999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeee--e
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVS--H  324 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~--~  324 (384)
                      |.+.+..+........|.|..   +|.+...++......|+.++|.|.+.|. |++ .+.|+++|..+.........  .
T Consensus       110 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  189 (233)
T 3bqu_C          110 CLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD  189 (233)
T ss_dssp             EEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCC
T ss_pred             EEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCcc
Confidence            999986553322233455554   6777765555555679999999999985 443 79999999887654111111  1


Q ss_pred             eeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ...+.....+.|.|.....+|.|.|+|.|.|....
T Consensus       190 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          190 SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            11111123457889999999999999999998654

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.84  E-value=3e-21  Score=155.92  Aligned_cols=166  Identities=18%  Similarity=0.214  Sum_probs=113.0

Q ss_pred             eecCceEEEEEEeccc---CC-CeEEEEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        195 VSEGQTVYLYCYANGF---PA-PTISWRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~---~~-~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.+|+++.|.|.+.+.   |. +.+.|++++..+....         +.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            5789999999999876   33 6899999986543221         112234579999999999999999999976643


Q ss_pred             -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652        262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (384)
                       ..+.+.+  .+..+|.+.+.+.......|+.+.|.|.+.| +|.+ .|.|+++|..+.............+.....+.|
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  182 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKL  182 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEE
Confidence             2233322  4567788776555444446999999999998 6766 999999999874322111111111111122345


Q ss_pred             EEeecCCCCCeEEEEEEEeCCcce
Q psy16652        337 RVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      .|.....+|.|.|+|.|.|.....
T Consensus       183 ~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          183 NMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             EEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             EECHHHcCCCCeEEEEEEcCCCCC
Confidence            566555667999999999987654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.84  E-value=9.1e-20  Score=147.52  Aligned_cols=181  Identities=17%  Similarity=0.284  Sum_probs=117.7

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc-e---eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS-L---IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++++|.|.+.+.+  ...+.|++++.......+..... +. .   ....+|+.+..+...+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            35566789999999999998754  67899999853211111111100 00 0   113467777664445577999999


Q ss_pred             cCCCCCeeEEEEEEEccCc---ceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCC
Q psy16652        151 IQETDAGIYKCEVIISLNN---KVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDN  221 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~  221 (384)
                      ++.+|+|.|+|.+.+..+.   .....+.|.|...    |.+....+ ...+.+|+.+.|.|.+.+ .|.+ .+.|++++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            9999999999999865421   2334567777653    32221111 123568999999999988 8888 99999988


Q ss_pred             Cccccc--C-----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        222 SAALST--G-----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       222 ~~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ..+...  .     +.....+.|.|..... |+|.|+|.|.|..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASS  209 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGT
T ss_pred             cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCC
Confidence            753211  0     1112234688854444 569999999997665

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=2.8e-21  Score=155.66  Aligned_cols=179  Identities=17%  Similarity=0.216  Sum_probs=118.5

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      +....+.+|++|+|.|.+.+.+.+.+.|+++........+.............|+.+..  ......|.|.+++.+|+|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~   83 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAA   83 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEE
Confidence            66777899999999999876666689999975332111111111111111246676665  4556789999999999999


Q ss_pred             EEEEEEEccCc--ceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCcccccCce
Q psy16652        159 YKCEVIISLNN--KVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSAALSTGGS  230 (384)
Q Consensus       159 Y~C~~~~~~~~--~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~  230 (384)
                      |+|.+.+....  .......|.|.    .+|.+.... ....+.+|+.+.|.|.+.+. |+ +.+.|++++..+......
T Consensus        84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  162 (212)
T 1nfd_E           84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFP-PSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT  162 (212)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCC-CCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred             EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeC-CchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence            99999862222  22334556663    334333222 22224579999999999875 54 799999998765432110


Q ss_pred             ---------eEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        231 ---------IYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       231 ---------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                               ....+.|.|.++..+|+|.|+|.|.|....
T Consensus       163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                     122356889999999999999999997654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=3.7e-20  Score=153.57  Aligned_cols=175  Identities=19%  Similarity=0.234  Sum_probs=118.3

Q ss_pred             EEeecCceEEEEEEecccC--CCeEEEEeCC--Ccccc----------------cCceeEe------ccEEEEcCCCCCC
Q psy16652        193 VIVSEGQTVYLYCYANGFP--APTISWRRDN--SAALS----------------TGGSIYR------GNILKIPNITKTD  246 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~----------------~~~~~~~------~~~l~i~~~~~~d  246 (384)
                      ..+.+|++++|.|.+.+.|  .+.+.|++++  .....                ..+....      ...|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            4588999999999998865  6789999863  21110                1122111      2389999999999


Q ss_pred             CeEEEEEEEeCCC------Cc--eeeEEEEEEEecC---------------eEEecCCCcccccCCcEEEEEEEeccCCC
Q psy16652        247 RGTYYCVAQNGVG------RG--MKRNIAVEVEFAP---------------VITINRPRQGQALQYDAILECHVEAYPPP  303 (384)
Q Consensus       247 ~G~Y~C~~~~~~~------~~--~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  303 (384)
                      +|.|+|.+.+..|      ..  ......|.|..+|               .+...+....+.+|+.++|.|.+.+.|.+
T Consensus        90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  169 (257)
T 1f3r_B           90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN  169 (257)
T ss_dssp             CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred             CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence            9999999998753      11  1234567776543               12223445668899999999999998888


Q ss_pred             eEEEEE--CCEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        304 AIVWIK--DGVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       304 ~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      .+.|++  +|..+.            ...++....     .....+|+|.+++.+|+|.|.|.|.|..........|.|.
T Consensus       170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~  244 (257)
T 1f3r_B          170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK  244 (257)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred             cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec-----CCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence            999999  554331            012333221     1134579999999999999999999975222223456665


Q ss_pred             eee
Q psy16652        370 ETQ  372 (384)
Q Consensus       370 ~~~  372 (384)
                      +.+
T Consensus       245 ~~~  247 (257)
T 1f3r_B          245 AAE  247 (257)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.84  E-value=7.7e-20  Score=150.14  Aligned_cols=184  Identities=18%  Similarity=0.249  Sum_probs=122.5

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+...+..+.+.+|++|+|.|.+.+ +...+.|+|.........+..........   ..+|+.+..+ .....+|.|.+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~   81 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA   81 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECS
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECc
Confidence            4566777888999999999999865 66789999965443222222222211111   2367877764 45678999999


Q ss_pred             cCCCCCeeEEEEEEE--ccCcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeC
Q psy16652        151 IQETDAGIYKCEVII--SLNNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRD  220 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~--~~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~  220 (384)
                      ++.+|+|.|+|.+.+  ...........|.|..      +|.+....+....+.+|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            999999999999972  2223344455676653      2322222222223456899999999987 5656 7999999


Q ss_pred             CCcccccCc-----------eeEeccEEEEcCCCCCC-CeEEEEEEEeCCC
Q psy16652        221 NSAALSTGG-----------SIYRGNILKIPNITKTD-RGTYYCVAQNGVG  259 (384)
Q Consensus       221 ~~~~~~~~~-----------~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  259 (384)
                      +..+.....           .....+.|.|.....+| +|.|+|.+.|...
T Consensus       162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            877643221           11122358888888888 7799999998644

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.84  E-value=9.1e-20  Score=141.91  Aligned_cols=155  Identities=16%  Similarity=0.249  Sum_probs=112.5

Q ss_pred             CceEEeecCceEEEEEEec--ccCCCeEEEEe--CCCccc----------ccCc-eeEeccEEEEcCCCCCCCeEEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYAN--GFPAPTISWRR--DNSAAL----------STGG-SIYRGNILKIPNITKTDRGTYYCVA  254 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~--~~~~~~v~W~~--~~~~~~----------~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~  254 (384)
                      ...+....|+++.|.|...  +.+.+.+.|++  ++..+.          ...+ ....+++|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            3456788999999999542  24456899999  776552          1112 2234568999999999999999999


Q ss_pred             EeCCCCce-eeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCc
Q psy16652        255 QNGVGRGM-KRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE  330 (384)
Q Consensus       255 ~~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  330 (384)
                      .|..+... ...+.|.|..+   |.+..        .+..+.|.|.+.+.|.+.+.|+++|..+ ..             
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-------------  143 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-------------  143 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-------------
T ss_pred             EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-------------
Confidence            99877643 35667777643   33332        2336899999999899999999999877 11             


Q ss_pred             cccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       331 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                       ....|.+.. ..+|.|.|+|.|.|..|.......+..
T Consensus       144 -~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c  179 (182)
T 1hnf_A          144 -SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC  179 (182)
T ss_dssp             -ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             -CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence             123344433 468999999999999999888776643

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.83  E-value=3.7e-19  Score=144.23  Aligned_cols=182  Identities=20%  Similarity=0.310  Sum_probs=120.6

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC-ce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG-SL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +..+.+.+|++|+|.|.+.+.+  ...+.|+|.........+...... ..    ....+|+.+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            4567789999999999998754  468999997643211111111111 00    1134688877654556789999999


Q ss_pred             CCCCCeeEEEEEEEccC---c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEe-
Q psy16652        152 QETDAGIYKCEVIISLN---N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRR-  219 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~-  219 (384)
                      +.+|+|.|+|.+.+..+   .  .....+.|.|..    +|.+....+. ..+.+|+.+.|.|.+.+. |.+ .+.|++ 
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC-ENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT-TCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC-cccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            99999999999975432   1  122445777763    2222211111 124689999999999875 766 999999 


Q ss_pred             CCCcccc--------cCceeEeccEEEEcCCCC--CCCeEEEEEEEeCCCCc
Q psy16652        220 DNSAALS--------TGGSIYRGNILKIPNITK--TDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       220 ~~~~~~~--------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~  261 (384)
                      ++..+..        ..+.....+.|.|.....  +|.|.|+|.+.|..+..
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            7766543        012222345688887776  78999999999987764

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.83  E-value=6.9e-20  Score=150.93  Aligned_cols=186  Identities=21%  Similarity=0.320  Sum_probs=122.9

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee----CCceEEeeCCCCceEEEEE
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----DSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i  148 (384)
                      +.+...+..+.+.+|++|+|.| ..+.+...+.|+|.........+...........    .+|+.+..+ .....+|.|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I   80 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKI   80 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEE
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEE
Confidence            4566777888899999999999 5556777999999543322122222222211111    177877764 356789999


Q ss_pred             eecCCCCCeeEEEEEEEcc---CcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652        149 KEIQETDAGIYKCEVIISL---NNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW  217 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W  217 (384)
                      .+++.+|+|.|+|.+.+..   .........|.|..      +|.+....+....+.+|+.+.|.|.+.+ .|.+ .+.|
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence            9999999999999997422   22344556677763      3322222222223456999999999987 4545 8999


Q ss_pred             EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  260 (384)
                      ++++..+...               .+.......|.|.....+| +|.|+|.+.|....
T Consensus       161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            9988766432               1222223458888888778 99999999986433

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.83  E-value=6.8e-20  Score=148.57  Aligned_cols=173  Identities=18%  Similarity=0.297  Sum_probs=117.9

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-------------------ccCceeEe------ccEEEEcCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-------------------STGGSIYR------GNILKIPNI  242 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-------------------~~~~~~~~------~~~l~i~~~  242 (384)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++....  ..                   ...+....      ...|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            34678999999999998755  578999985421  10                   01111111      238999999


Q ss_pred             CCCCCeEEEEEEEeCCCC----ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCE
Q psy16652        243 TKTDRGTYYCVAQNGVGR----GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGV  312 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~  312 (384)
                      +.+|+|.|.|.+.+..+.    .......|.|..    +|.+...++...+..|+.++|.|.+.|. |.| .+.|+++|.
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  168 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  168 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCe
Confidence            999999999999986531    112334566653    4666554444456689999999999985 888 999999987


Q ss_pred             EecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .+... ..... ...+.....+.|.|..++.+| |.|+|.|.|..|.......|.
T Consensus       169 ~~~~~-~~~~~-~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          169 SSGVH-TFPAV-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             CTTEE-EEEEE-EETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EcceE-ecccc-ccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            65321 11111 111111224578999999899 999999999999876665544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.83  E-value=1.6e-19  Score=151.48  Aligned_cols=182  Identities=16%  Similarity=0.273  Sum_probs=122.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      .+.. +....+.+|++|+|.|.+.+.  +...+.|++.........+.... ...    .....+|+.+..+......+|
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM   81 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            3445 677788999999999999764  56789999865433222222221 111    112346888876556777899


Q ss_pred             EEeecCCCCCeeEEEEEEEc--------cCcceeeeEEEEEec---------------CCccccCCCceEEeecCceEEE
Q psy16652        147 SIKEIQETDAGIYKCEVIIS--------LNNKVSAEVELIVRR---------------PPIISDNSTRSVIVSEGQTVYL  203 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~~~~~~~~~~~~~~~~g~~~~l  203 (384)
                      .|.+++.+|+|.|+|.+.+.        ..........|.|..               ++.+. ..+. ..+.+|++++|
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~-~~p~-~~v~~G~~v~L  159 (280)
T 3fku_X           82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLT-QPPS-VSKGLRQTATL  159 (280)
T ss_dssp             EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBB-CCSE-EEECTTCCEEE
T ss_pred             EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEE-eCCc-EEEecCCCEEE
Confidence            99999999999999999754        122233455677765               22222 3333 78999999999


Q ss_pred             EEEecc-cC-CCeEEEEeCCC--cccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        204 YCYANG-FP-APTISWRRDNS--AALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       204 ~C~~~~-~~-~~~v~W~~~~~--~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      .|.+.+ .+ .+.+.|++...  .+..            ..+...    ....|.|.+++.+|+|.|+|.+.+..
T Consensus       160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            999977 43 37899998432  1110            011111    12359999999999999999999865

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.83  E-value=1.9e-20  Score=153.16  Aligned_cols=176  Identities=17%  Similarity=0.289  Sum_probs=117.7

Q ss_pred             CceEEeecCceEEEEEEecccC-CC-eEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP-AP-TISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGT  249 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~-~~-~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~  249 (384)
                      +....+.+|+++.|.|.+.+.+ .+ .+.|++++.  ...            ...+...    ....|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            4445688999999999998754 34 799998642  110            0111111    12379999999999999


Q ss_pred             EEEEEEeCCCC--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCcee
Q psy16652        250 YYCVAQNGVGR--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYS  321 (384)
Q Consensus       250 Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~  321 (384)
                      |+|.+.+..+.  .......|.|.    .+|.+...++......|+.++|.|.+.|.++  +.+.|+++|..+.......
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999997662  11223445552    3555555444444456889999999998543  3899999999886542111


Q ss_pred             e-eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        322 V-SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       322 ~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      . .....+.....+.|.|..+..+|.|.|+|.|.|..+..++++.
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  230 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  230 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence            0 1111111223457889999999999999999999987666553

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.83  E-value=7.5e-20  Score=150.90  Aligned_cols=173  Identities=18%  Similarity=0.310  Sum_probs=117.2

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-----------------STGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-----------------~~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|+++.|.|.+.+.|  .+.+.|+++...  ..                 ...+....      ..+|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            46788999999999998876  578999985321  10                 01111111      23799999999


Q ss_pred             CCCeEEEEEEEeCCCCc-eeeEEEEEEEec---------------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652        245 TDRGTYYCVAQNGVGRG-MKRNIAVEVEFA---------------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWI  308 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~  308 (384)
                      +|+|.|+|.+.+..+.. ......|.|..+               +.+...+....+.+|+.++|.|.+.+.|.+.+.|+
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~  170 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWY  170 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEE
Confidence            99999999999872211 123346666543               33444455566889999999999999998999999


Q ss_pred             E--CCEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEEe
Q psy16652        309 K--DGVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFDR  369 (384)
Q Consensus       309 ~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  369 (384)
                      +  ++..+.            ...++...     ......+|+|.+++.+|+|.|+|.|.|..+..- ....|.|.
T Consensus       171 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          171 QQKPGQAPRPLIYDASTRATGIPDRFSGS-----GSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EECTTSCCEEEEETTTEECTTCCTTEEEE-----CSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EECCCCCcEEEEEEeccCCCccCCCEEEe-----cCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            9  554331            12233221     112345799999999999999999998644322 23456665

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.83  E-value=6.5e-20  Score=151.79  Aligned_cols=182  Identities=19%  Similarity=0.251  Sum_probs=120.6

Q ss_pred             CceEEeecCceEEEEEEecccC--CCeEEEEeCCC--cccc-----------------cCceeEe------ccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AALS-----------------TGGSIYR------GNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~~-----------------~~~~~~~------~~~l~i~~~  242 (384)
                      +....+.+|++++|.|.+.+.+  .+.+.|++...  ....                 ..+....      ...|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            3456788999999999998744  67899998321  1100                 0111111      124999999


Q ss_pred             CCCCCeEEEEEEEeCCCCceeeEEEEEEEe---------------cCeEEecCCCcccccCCcEEEEEEEeccCCC----
Q psy16652        243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEF---------------APVITINRPRQGQALQYDAILECHVEAYPPP----  303 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----  303 (384)
                      +.+|+|.|+|.+.+..+........|.|..               +|.+...+....+.+|+.++|.|.+.+.|.+    
T Consensus        88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  167 (253)
T 3uzq_A           88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNS  167 (253)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEE
T ss_pred             CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCc
Confidence            999999999999986554333455666664               3555556666788999999999999998876    


Q ss_pred             eEEEEECC--EEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEE
Q psy16652        304 AIVWIKDG--VQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFD  368 (384)
Q Consensus       304 ~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v  368 (384)
                      .+.|++++  ..+.            ...++....     .....+|+|.+++.+|+|.|.|.|.|..+..- .-..|.|
T Consensus       168 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v  242 (253)
T 3uzq_A          168 FMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG-----SRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI  242 (253)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             EEEEEEECCCCCCEEEEEEccccCCccCCceEEeC-----CCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence            89999842  2111            012222211     11345799999999999999999999654332 2356777


Q ss_pred             eeeecCCc
Q psy16652        369 RETQTGDE  376 (384)
Q Consensus       369 ~~~~~~~~  376 (384)
                      .+.++.+.
T Consensus       243 ~~~~~~~~  250 (253)
T 3uzq_A          243 KRPLEHHH  250 (253)
T ss_dssp             CCC-----
T ss_pred             cCCCCCcc
Confidence            77765443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.82  E-value=1.5e-19  Score=146.34  Aligned_cols=181  Identities=19%  Similarity=0.324  Sum_probs=119.3

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc--Cc-----eeeeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS--GS-----LIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|+|.+.......+.....  +.     .....+|+.+..+...+..+|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            5566789999999999998755  67899999764311111111110  00     011246787766444567799999


Q ss_pred             ecCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCC
Q psy16652        150 EIQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN  221 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~  221 (384)
                      +++.+|+|.|+|.+.+..+.  .......|.|..    +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC-CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc-ccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            99999999999999865322  122446677753    232221111 1235689999999999886 888 99999987


Q ss_pred             Ccc----cc---cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        222 SAA----LS---TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       222 ~~~----~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ...    ..   ..+.....+.|.|.....++ |.|+|.|.|..+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  211 (220)
T 1pz5_B          166 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV  211 (220)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred             cccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence            631    10   01222335678998888766 99999999987753

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.82  E-value=1.2e-19  Score=146.88  Aligned_cols=171  Identities=20%  Similarity=0.315  Sum_probs=116.8

Q ss_pred             ceEEeecCceEEEEEEecccC--CCeEEEEeCCC--c---ccc----------------cCceeEe------ccEEEEcC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--A---ALS----------------TGGSIYR------GNILKIPN  241 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~---~~~----------------~~~~~~~------~~~l~i~~  241 (384)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++.+.  .   +..                ..+....      ...|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            345688999999999998765  57899998642  1   000                1111111      12899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCc--eeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEE
Q psy16652        242 ITKTDRGTYYCVAQNGVGRG--MKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQ  313 (384)
Q Consensus       242 ~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~  313 (384)
                      ++.+|+|.|+|.+.+..+..  ......|.|.    .+|.+...++...+.+|+.++|.|.+.|. |.| .+.|++++..
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  167 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALS  167 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcc
Confidence            99999999999999865321  1134566665    35666655545556789999999999986 888 9999998863


Q ss_pred             ec--CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        314 IM--NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       314 ~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      ..  .....  .  ..+.....+.|.|.....+| |.|+|.|.|..|+.++++.+
T Consensus       168 ~~~~~~~~~--~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  217 (220)
T 1pz5_B          168 SGVRTVSSV--L--QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI  217 (220)
T ss_dssp             TTEEECCCE--E--ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cceEEcCCc--c--cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence            10  00000  0  00111234678898888866 99999999999987776543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.82  E-value=1.8e-19  Score=148.98  Aligned_cols=163  Identities=17%  Similarity=0.230  Sum_probs=111.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc--------------ccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL--------------STGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +..+.+.+|+++.|.|.+.+.+.+.+.|++......              ...+...    ....|.|.+++.+|+|.|+
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   90 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF   90 (250)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence            556778999999999999998888999998542110              0011111    1227999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEec-------------------CeEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEEC
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEFA-------------------PVITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKD  310 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~  310 (384)
                      |.+.+..+........|.|..+                   +.....+....+.+|+.++|.|.+.+.|  .+.+.|+++
T Consensus        91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F           91 CQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             EEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             EEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            9999865543334445666543                   2233344556688999999999998877  779999997


Q ss_pred             --CEEecC-----------------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652        311 --GVQIMN-----------------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       311 --~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                        +..+..                 ..++.+....   .....+|+|.+++.+|+|.|.|.|.|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          171 RPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADK---SSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCCCcEEEEEEeccCCccccCccccceEEEEecC---CCCeEEEEECCCCcccCEEEEEEEec
Confidence              432210                 1233332111   11345799999999999999999997

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.82  E-value=1.3e-19  Score=139.98  Aligned_cols=148  Identities=15%  Similarity=0.147  Sum_probs=108.5

Q ss_pred             eEEeecCceEEEEEEecccCCCeEEEEeCCCccccc------------CceeE--eccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST------------GGSIY--RGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~------------~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+.+.+|++++|.|.+.+ |.+.+.|++++..+...            .+...  .+..|.|.+++.+|+|.|.|.+.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            456889999999999854 77899999987543211            11111  3468999999999999999999887


Q ss_pred             CCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652        258 VGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT  334 (384)
Q Consensus       258 ~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (384)
                      .+   ...+.|.|..+   |.+......        ..|.|.+.+.|.|.+.|+++|..+....              ..
T Consensus        83 ~~---~~~~~L~V~~~~~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~--------------~~  137 (171)
T 1ccz_A           83 TD---TMKFFLYVLEMVSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLR--------------QK  137 (171)
T ss_dssp             CS---CEEEEEEEECCCCCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEES--------------SS
T ss_pred             CC---cEEEEEEEECcCCCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCc--------------ce
Confidence            66   45677777664   333322211        2799999998999999999998875322              22


Q ss_pred             eEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        335 SLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .|.+.  ..+|.|.|+|.|.|..|.....+.|.
T Consensus       138 ~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          138 TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence            33333  36789999999999999988877664

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.82  E-value=2.8e-19  Score=148.24  Aligned_cols=177  Identities=19%  Similarity=0.300  Sum_probs=118.3

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCCcccc-------------------cCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALS-------------------TGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~-------------------~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+.+  .+.+.|++.......                   ..+....      ...|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            35588999999999998755  578999984321100                   0111111      22599999999


Q ss_pred             CCCeEEEEEEEeCCC---CceeeEEEEEEEe----------------cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652        245 TDRGTYYCVAQNGVG---RGMKRNIAVEVEF----------------APVITINRPRQGQALQYDAILECHVEAYPPPAI  305 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  305 (384)
                      +|+|.|.|.+.+...   ........|.|..                +|.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v  170 (256)
T 3umt_A           91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNL  170 (256)
T ss_dssp             GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEE
Confidence            999999999998621   1123345666664                556666666678899999999999999888899


Q ss_pred             EEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEEee
Q psy16652        306 VWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFDRE  370 (384)
Q Consensus       306 ~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  370 (384)
                      .|+++  +..+.            ...++....     .....+|+|.+++.+|+|.|.|.|.|..+..- ....|.|.+
T Consensus       171 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~  245 (256)
T 3umt_A          171 NWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR-----SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR  245 (256)
T ss_dssp             EEEEECTTCCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EEEEECCCCCcEEEEEeccccCCccCCCEEEec-----CCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence            99984  22111            112332221     11345699999999999999999999654332 235677776


Q ss_pred             eec
Q psy16652        371 TQT  373 (384)
Q Consensus       371 ~~~  373 (384)
                      .+.
T Consensus       246 ~~~  248 (256)
T 3umt_A          246 AAA  248 (256)
T ss_dssp             ---
T ss_pred             CCc
Confidence            654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.82  E-value=4.3e-19  Score=148.74  Aligned_cols=181  Identities=14%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcc-----cc---------cCceeEe----ccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA-----LS---------TGGSIYR----GNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~-----~~---------~~~~~~~----~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|++++|.|.+.+.|.+.+.|++++...     ..         ..+....    ...|.|.+++.+|+|.|+
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   98 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY   98 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence            45567899999999999998888899999865311     00         1111111    237999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEecC--------------eEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEECC--EE
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEFAP--------------VITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKDG--VQ  313 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~  313 (384)
                      |.+.|..+........|.|..+|              .....+....+.+|+.++|.|.+.+.|  .+.+.|++++  ..
T Consensus        99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~  178 (276)
T 3auv_A           99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKC  178 (276)
T ss_dssp             EEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCC
T ss_pred             EEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCC
Confidence            99998754422333556665543              122234556788999999999999876  4799999963  21


Q ss_pred             e-----------------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC---cc--eEEEEEEEEeee
Q psy16652        314 I-----------------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY---GS--AQKEIELFDRET  371 (384)
Q Consensus       314 ~-----------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~--~~~~~~l~v~~~  371 (384)
                      +                 ....++.+....   ......|.|.+++.+|+|.|.|.|.|..   +.  ......|.|...
T Consensus       179 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          179 LEWVAGITPAGGYTYYADSVKGRFTISADT---SKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             EEEEEEECGGGCCEEECTTTTTTEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             cEEEEEEeccCCccccccccCCcEEEEecC---CCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence            1                 012233332210   1124579999999999999999999983   21  112346666655


Q ss_pred             ec
Q psy16652        372 QT  373 (384)
Q Consensus       372 ~~  373 (384)
                      ++
T Consensus       256 ~~  257 (276)
T 3auv_A          256 SA  257 (276)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.82  E-value=6.8e-20  Score=147.24  Aligned_cols=168  Identities=20%  Similarity=0.275  Sum_probs=114.5

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc----------------ccCceeEe------ccEEEEcCCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL----------------STGGSIYR------GNILKIPNITKT  245 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~  245 (384)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++++  ....                ...+....      ...|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   88 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE   88 (210)
T ss_dssp             CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence            34678999999999998765  3789999863  2110                01122111      138999999999


Q ss_pred             CCeEEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCc
Q psy16652        246 DRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQH  319 (384)
Q Consensus       246 d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~  319 (384)
                      |+|.|+|.+.+...  ......|.|.    .+|.+...++...+..|+.++|.|.+.|. |.| .+.|++++..+.....
T Consensus        89 D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~  166 (210)
T 3d9a_H           89 DTATYYCANWDGDY--WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF  166 (210)
T ss_dssp             GCEEEEEEETTSSC--BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred             cCEEEEEEEecCcc--cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEc
Confidence            99999999998631  1223455555    35666655555567789999999999986 888 9999999875421111


Q ss_pred             eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652        320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI  364 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  364 (384)
                      ....  ..+.....+.|.|.....+| |.|+|.|.|..|......
T Consensus       167 ~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          167 PAVL--QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             CCEE--ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CCcc--CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            0111  11111234568999988877 999999999999876543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.82  E-value=3e-18  Score=139.62  Aligned_cols=182  Identities=19%  Similarity=0.280  Sum_probs=116.5

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|+|.........+.........    ...+|+.+..+...+..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            4556789999999999998753  578999997643222222211111111    1246888876555667899999999


Q ss_pred             CCCCeeEEEEEEEccC--c---ceeeeEEEEEecC----CccccCCCceEEeecC-ceEEEEEEeccc-CCC-eEEEEe-
Q psy16652        153 ETDAGIYKCEVIISLN--N---KVSAEVELIVRRP----PIISDNSTRSVIVSEG-QTVYLYCYANGF-PAP-TISWRR-  219 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~--~---~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~-~v~W~~-  219 (384)
                      .+|+|.|+|.+.+..+  .   .....+.|.|...    |.+....+. ..+..| +.+.|.|.+.+. |.+ .+.|++ 
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~  165 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSWKYK  165 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence            9999999999963111  1   1234567777652    222211111 123478 999999999874 776 999999 


Q ss_pred             CCCcccc--------cCceeEeccEEEEcCCCC--CCCeEEEEEEEeCCCCc
Q psy16652        220 DNSAALS--------TGGSIYRGNILKIPNITK--TDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       220 ~~~~~~~--------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~  261 (384)
                      ++..+..        ..+.....+.|.|.....  +|.|.|+|.+.|..+..
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~  217 (232)
T 1dn0_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK  217 (232)
T ss_dssp             TSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCc
Confidence            7765532        012222345788988887  78999999999987653

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.82  E-value=1.1e-20  Score=148.48  Aligned_cols=144  Identities=20%  Similarity=0.274  Sum_probs=100.6

Q ss_pred             eeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee-cCCCCCeeEEE
Q psy16652         83 IKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE-IQETDAGIYKC  161 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C  161 (384)
                      ++.+|+++.|.|.+.+ + ..+.|+|++.....               .          .+.+|.|.+ ++.+|+|.|+|
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~---------------~----------~~~~L~I~~~~~~~D~G~Y~C   62 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQ---------------K----------HDKHLVLQDFSEVEDSGYYVC   62 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECS---------------C----------CCSEEEEESCCTTTSCEEEEE
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCC---------------C----------CCCEEEECCCCccccCEEEEE
Confidence            4578999999999876 3 35999997754110               0          122699999 99999999999


Q ss_pred             EEEEccCcceeeeEEEEEec--CCcc----------------cc---CCCce---EEeecCceEEEEEEecccCCCeEEE
Q psy16652        162 EVIISLNNKVSAEVELIVRR--PPII----------------SD---NSTRS---VIVSEGQTVYLYCYANGFPAPTISW  217 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~l~v~~--~~~~----------------~~---~~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W  217 (384)
                      .+.+..+. .+..+.+.|..  ++..                ..   .....   ..+.+|+++.|.|.+   |.+.+.|
T Consensus        63 ~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W  138 (186)
T 1jbj_A           63 YTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKW  138 (186)
T ss_dssp             ECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEE
T ss_pred             EEEeCCCc-EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEE
Confidence            99755443 33333333322  1110                00   00001   124499999999988   7789999


Q ss_pred             EeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ++++..+.....   ....|.|.++..+|+|.|+|.|.|..|.
T Consensus       139 ~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          139 LKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             EETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             EECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            999987653322   5668999999999999999999997654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.82  E-value=9.1e-20  Score=144.18  Aligned_cols=167  Identities=14%  Similarity=0.176  Sum_probs=109.1

Q ss_pred             eCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCc--------eeeeCCceEEeeCCCCceEEEEE
Q psy16652         78 ISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGS--------LIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .|..+.+.+|++|+|.|.+.+ .+...+.|++++...    ..+.....        .....+|+.+.     .+.+|.|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I   74 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSL----AFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQL   74 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEE----EEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEE----EEEecccCCCCceeecCccccccEEEC-----CCeEEEE
Confidence            355677899999999999875 345689999975311    00111000        00112355553     2357999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCc-eEEEEEEeccc-CCCeEEEEeCCCcccc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ-TVYLYCYANGF-PAPTISWRRDNSAALS  226 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-~~~~v~W~~~~~~~~~  226 (384)
                      .+++.+|+|.|+|.+.+..+. ....+.|.|..++..+...........|. .+.|.|.+.+. |.+.+.|++++..+. 
T Consensus        75 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~-  152 (193)
T 2if7_A           75 SNLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS-  152 (193)
T ss_dssp             CSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-
T ss_pred             CCCCcccCceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC-
Confidence            999999999999999855443 44577888876543221111111233465 89999999884 578999999876442 


Q ss_pred             cCceeEeccEEEEcCCCCC-CCeEEEEEEEeCCCCc
Q psy16652        227 TGGSIYRGNILKIPNITKT-DRGTYYCVAQNGVGRG  261 (384)
Q Consensus       227 ~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~  261 (384)
                            .+..|.|.....+ |+|.|+|.|.|..+..
T Consensus       153 ------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          153 ------SQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             ------SSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             ------CCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence                  2345777554444 8999999999987764

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.82  E-value=1.5e-19  Score=151.09  Aligned_cols=203  Identities=15%  Similarity=0.173  Sum_probs=116.0

Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc----
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS----  226 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~----  226 (384)
                      .+..|.+.|.|.+.+..+... ....+.|.       ..+..+.+.+|++++|.|.+.+ +.+.+.|++.......    
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~-~~~~~~v~-------~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~   73 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSG-GGGGMKVI-------QTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLI   73 (270)
T ss_dssp             --------------------------CCCE-------EECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccc-cccceeEE-------eCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEE
Confidence            356899999999975544322 11122222       1245567899999999999865 6679999983321100    


Q ss_pred             ---c----------C-ceeE-----eccEEEEcCCCCCCCeEEEEEEEeCCC---CceeeEEEEEEEe------cCeEEe
Q psy16652        227 ---T----------G-GSIY-----RGNILKIPNITKTDRGTYYCVAQNGVG---RGMKRNIAVEVEF------APVITI  278 (384)
Q Consensus       227 ---~----------~-~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~  278 (384)
                         .          . +...     ....|.|.+++.+|+|.|.|.+.+...   ........|.|..      +|.+.+
T Consensus        74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~  153 (270)
T 3qib_D           74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV  153 (270)
T ss_dssp             EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred             EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence               0          0 1111     134799999999999999999996421   1123345666665      566554


Q ss_pred             c-CCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeee------eccCccccceEEEeecCCCC-CeE
Q psy16652        279 N-RPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQ  348 (384)
Q Consensus       279 ~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~  348 (384)
                      . +....+..|+.++|.|.+.+ .|.+ .+.|+++|..+...........      ..+.....+.|.|.....+| .|.
T Consensus       154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~  233 (270)
T 3qib_D          154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH  233 (270)
T ss_dssp             EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCE
T ss_pred             ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCe
Confidence            3 33344566999999999988 6766 8999999999865432211000      11111123557888887777 999


Q ss_pred             EEEEEEeCCcceEE
Q psy16652        349 YACKAANKYGSAQK  362 (384)
Q Consensus       349 Y~C~a~n~~g~~~~  362 (384)
                      |+|.|.|.......
T Consensus       234 YtC~v~~~~l~~~~  247 (270)
T 3qib_D          234 FRCQVQFYGLSEND  247 (270)
T ss_dssp             EEEEEEECCBCTTS
T ss_pred             EEEEEEecCCCCcc
Confidence            99999998776554

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.82  E-value=2.9e-19  Score=146.54  Aligned_cols=164  Identities=15%  Similarity=0.191  Sum_probs=111.9

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc---------------ccCceeE-----eccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL---------------STGGSIY-----RGNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~---------------~~~~~~~-----~~~~l~i~~~~~~d~  247 (384)
                      +..+.+.+|++++|.|. .+.+.+.+.|+++..  ...               ...+...     ....|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            45677899999999999 677888999999521  100               0111111     134799999999999


Q ss_pred             eEEEEEEEeCCCCc----eeeEEEEEEEecC------------eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC
Q psy16652        248 GTYYCVAQNGVGRG----MKRNIAVEVEFAP------------VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG  311 (384)
Q Consensus       248 G~Y~C~~~~~~~~~----~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~  311 (384)
                      |.|+|.+.+..+..    ......|.|...+            .+...+....+.+|+.++|.|.+.+.|.+.+.|++++
T Consensus        86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A           86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            99999999875421    1133456665543            4444556667889999999999999999999999964


Q ss_pred             E-----Ee---------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        312 V-----QI---------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       312 ~-----~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      .     .+         ....++.+...   ......+|.|.+++.+|+|.|+|.|.|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          166 PGEGPALLISILSVSDKKEDGRFTIFFN---KREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             TTSCCEEEEEEETTCSEEEETTEEEEEE---TTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCCCCEEEEEEccCCCcccCCceEEEec---CCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            1     11         01122222210   11234689999999999999999999984

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.82  E-value=1.9e-18  Score=135.90  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=114.8

Q ss_pred             eEEeecCceEEEEEEecccCCC--eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        192 SVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      .+.+..|++++|.|.+ +.|.|  .|.|.+.+..+. .......+..|.|.+++.+|+|.|.|.+.+..+. ..+.+.|.
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~lt   92 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG-AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLL   92 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC-CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC-cEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEE
Confidence            3678999999999999 77777  999999665441 1111223568999999999999999999998765 46789999


Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEEecc-CC----CeEEEEECCEEecCCCcee--eee----e--ec-cCccccce
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHVEAY-PP----PAIVWIKDGVQIMNNQHYS--VSH----F--AT-SDEFSDTS  335 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~v~W~~~~~~~~~~~~~~--~~~----~--~~-~~~~~~~~  335 (384)
                      |..+|......+. ....|+.. |.|.+.+. |.    ++|.|+++|.++.......  ...    .  .. ....-.++
T Consensus        93 V~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~  170 (210)
T 1gsm_A           93 VYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTER  170 (210)
T ss_dssp             EEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEE
T ss_pred             EEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEE
Confidence            9999865442222 56677888 99999884 64    3899999999996443211  100    0  00 01111233


Q ss_pred             EEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        336 LRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       336 l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      |.+.....+|.+.|+|.|.+..-...
T Consensus       171 ~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          171 WRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             EECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             EeecCCcccCCceEEEEEEeeCCCCc
Confidence            44445566667899999999864443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.82  E-value=6.5e-20  Score=148.88  Aligned_cols=190  Identities=15%  Similarity=0.226  Sum_probs=123.3

Q ss_pred             CcceeeeccCcEEEEEEeecCCCc---cEEEEEeCCCCCCcccceeccC-----ceeeeCCceEEee-----CCCCceEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDY---PVIWMKMDTAKKMEPLPISMSG-----SLIIHDSRFQLTT-----DPETSTYI  145 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~  145 (384)
                      ++++.+..|++|+|.|.+.+.+..   .|.|+|++.....   ......     .......+..+..     .....+++
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVA---AFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDAT   84 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEE---EEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCC
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceE---EEecccceeeccccccccceeeeccccccccccCcEE
Confidence            445678999999999999876543   4899997754210   000000     0011122222221     12345668


Q ss_pred             EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcc
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAA  224 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~  224 (384)
                      |.|.+++.+|+|.|+|.+.+..+........+.+..++..... +.......++.+.+.|.+ .+.|++.+.|++++...
T Consensus        85 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~  163 (225)
T 4fmk_A           85 LAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAE-AQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE  163 (225)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE-ECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred             EEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeec-ccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence            9999999999999999998776665665666666665544322 222335567777777776 56788899999987655


Q ss_pred             cccCc-------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEe
Q psy16652        225 LSTGG-------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEF  272 (384)
Q Consensus       225 ~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~  272 (384)
                      .....       .....+.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|++
T Consensus       164 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          164 AKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             cCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            43221       11223479999999999999999999977654 34455555544

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.82  E-value=3.7e-19  Score=144.42  Aligned_cols=180  Identities=18%  Similarity=0.270  Sum_probs=118.7

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc-e---eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS-L---IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|+|.........+..... +. .   ....+|+.+..+...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4556789999999999998765  67899999764321111111111 00 0   0124688877654566789999999


Q ss_pred             CCCCCeeEEEEEEEccC-----c--ceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEE
Q psy16652        152 QETDAGIYKCEVIISLN-----N--KVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWR  218 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~  218 (384)
                      +.+|+|.|+|.+.+..+     .  .....+.|.|...    |.+....+.. .+.+|+.+.|.|.+.+. |.+ .+.|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            99999999999986542     1  1223467777652    3222111111 24679999999999875 766 99999


Q ss_pred             eCCCcccc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        219 RDNSAALS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       219 ~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +++..+..        ..+.......|.|.....+| |.|+|.|.|..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            98865321        11112233468999988888 9999999996543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.82  E-value=3.4e-19  Score=145.08  Aligned_cols=184  Identities=17%  Similarity=0.275  Sum_probs=118.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +...+..+.+.+|++|+|.|.+.+.  +...+.|+|.........+........    ....+|+.+..+...+..+|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            4455667788999999999998764  456899999764322222222211111    1145788887755557889999


Q ss_pred             eecCCCCCeeEEEEEEEc--cC-cceeeeEEEEEec---------CCccccCCCceEEeecCceEEEEEEeccc-CC-Ce
Q psy16652        149 KEIQETDAGIYKCEVIIS--LN-NKVSAEVELIVRR---------PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PT  214 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~--~~-~~~~~~~~l~v~~---------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~  214 (384)
                      .+++.+|+|.|.|.+.+.  .. ......+.|.|..         +|......+....+.+|+.+.|.|.+.+. |. +.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~  163 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR  163 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence            999999999999999753  11 1223445777762         12211111222224468899999999875 65 59


Q ss_pred             EEEEe-CCCccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        215 ISWRR-DNSAALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       215 v~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.|++ ++..+...        ++.....+.|.|..... + |.|+|.+.|....
T Consensus       164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            99999 66554321        11122234688887775 4 9999999997654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.82  E-value=2.2e-19  Score=144.21  Aligned_cols=179  Identities=18%  Similarity=0.279  Sum_probs=117.6

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +....+.+|++++|.|.+.+.+  ...+.|+|.+.......+.....+...    ...+|+.+..+...+..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            5566789999999999998764  478999997532111111111111100    1346777766434456799999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALS  226 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~  226 (384)
                      .+|+|.|+|.+.+..  .......|.|..    +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++++..+..
T Consensus        87 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~  163 (210)
T 3d9a_H           87 TEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV  163 (210)
T ss_dssp             GGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECC-TTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             cccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecC-CcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccce
Confidence            999999999997532  223345666653    232221111 1225689999999999885 877 9999998865321


Q ss_pred             c-------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        227 T-------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       227 ~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      .       .+.......|.|.....+| |.|+|.|.|..+..
T Consensus       164 ~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          164 HTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  204 (210)
T ss_dssp             EECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred             EEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            1       0122234568998888877 99999999987654

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.82  E-value=5.6e-19  Score=143.67  Aligned_cols=181  Identities=18%  Similarity=0.246  Sum_probs=118.1

Q ss_pred             CcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....+.+|++|+|.|.+.+.+.    ..+.|+|.........+.........    ...+|+.+..+...+...|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            55677899999999999987653    78999997533211111111111111    12467887765445678999999


Q ss_pred             cCCCCCeeEEEEEEEccC------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEE
Q psy16652        151 IQETDAGIYKCEVIISLN------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TIS  216 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~  216 (384)
                      ++.+|+|.|+|.+.+..+      .  .....+.|.|..    +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~-~~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAP-VCGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecc-cccccCCCCEEEEEEEccEeCCCEEEE
Confidence            999999999999986543      1  122346777763    233322211 2235689999999999875 777 999


Q ss_pred             EEeCCCcccccC-------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        217 WRRDNSAALSTG-------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       217 W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      |++++..+....       +.......|.|.....++ |.|+|.|.|..+..
T Consensus       166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~  216 (228)
T 3bae_H          166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST  216 (228)
T ss_dssp             EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence            999886532110       112234568998888866 99999999987653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.82  E-value=8e-19  Score=144.16  Aligned_cols=164  Identities=15%  Similarity=0.155  Sum_probs=110.7

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +....+.+|++++|.|.+.+.+.+.+.|+++..  ...            ...+...    ....|.|.+++.+|+|.|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence            455678999999999999988888999998542  110            0111111    1237999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEecCe-------------EEecCCCcccccCCcEEEEEEEeccC--CCeEEEEEC--CEEe
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEFAPV-------------ITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKD--GVQI  314 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~~  314 (384)
                      |.+.+..+........|.|..+|.             ....+....+.+|+.++|.|.+.+.|  .+.+.|+++  +..+
T Consensus        88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~  167 (242)
T 2znx_A           88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRL  167 (242)
T ss_dssp             EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred             EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCc
Confidence            999987543223345677766542             22233345688999999999999876  468999984  2222


Q ss_pred             c----------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        315 M----------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       315 ~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      .                ...++.+...   ......+|+|.+++.+|+|.|.|.|.|.
T Consensus       168 ~~l~~~~~~g~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          168 EYMGYVSYSGSTYYNPSLKSRISITRD---TSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEEEECTTSCEEECGGGTTCEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             EEEEEEecCCccccCccccCcEEEEec---CCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            0                1223332210   1113458999999999999999999984

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.81  E-value=2.7e-19  Score=147.91  Aligned_cols=188  Identities=17%  Similarity=0.285  Sum_probs=121.4

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.  +...+.|+|.........+.... .+..    ....+|+.+..+...+..+|.|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            456778999999999999763  35689999976442222221111 1110    1234688887755567889999999


Q ss_pred             CCCCCeeEEEEEEEcc---CcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCC
Q psy16652        152 QETDAGIYKCEVIISL---NNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNS  222 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~  222 (384)
                      +.+|+|.|+|.+.+..   .........|.|.    .+|.+... .....+..|+.+.|.|.+.+ +|.+ .+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE-CC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe-cCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            9999999999997542   1223444567775    23333211 22233557999999999987 6766 899999886


Q ss_pred             ccc-------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        223 AAL-------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       223 ~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ...       ...+.....+.|.|.....+| |.|+|.|.|..+.. .....+.
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~-~~~~~~~  217 (253)
T 3liz_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST-KVDKKIV  217 (253)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTE-EEEEECC
T ss_pred             ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCc-ceEEEec
Confidence            321       111233334679999999999 99999999976653 3333433

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.81  E-value=6.5e-19  Score=142.44  Aligned_cols=168  Identities=20%  Similarity=0.291  Sum_probs=113.6

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+.+  .+.+.|++...  ...                 ...+....      ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            46788999999999998755  56899998542  110                 01112111      23899999999


Q ss_pred             CCCeEEEEEEEeCCCC--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CC--CeEEEEECCEEec
Q psy16652        245 TDRGTYYCVAQNGVGR--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PP--PAIVWIKDGVQIM  315 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~~~  315 (384)
                      +|+|.|.|.+.+..+.  .......|.|..    +|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++++..+.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~  167 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDIT  167 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCE
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecc
Confidence            9999999999986442  112334666653    45665544 3456789999999999886 76  6999999987652


Q ss_pred             CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      .. .........+.....+.|.|.....+|.|.|+|.|.|..|+..
T Consensus       168 ~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          168 TV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             eE-ecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            10 0000001111111234688988888999999999999998765

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.81  E-value=6.5e-19  Score=147.92  Aligned_cols=189  Identities=15%  Similarity=0.226  Sum_probs=123.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccC-c-e---eeeCCceEEeeCCCCceEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG-S-L---IIHDSRFQLTTDPETSTYI  145 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~  145 (384)
                      ..+.+...+..+.+.+|++|+|.|.+.+.+...+.|++.+.......+...... . .   ....+|+.+..+ .....+
T Consensus        23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~s  101 (279)
T 2wbj_D           23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLST  101 (279)
T ss_dssp             CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEE
T ss_pred             ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEE
Confidence            456778888889999999999999997777789999998643221211111110 0 0   013467877764 356789


Q ss_pred             EEEeecCCCCCeeEEEEEEEccC-----cceeeeEEEEEecC------CccccCCCceEEeecCceEEEEEEeccc-CC-
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLN-----NKVSAEVELIVRRP------PIISDNSTRSVIVSEGQTVYLYCYANGF-PA-  212 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-  212 (384)
                      |.|.+++.+|+|.|+|.+.+..+     ......+.|.|...      |.+....+....+.+|+.+.|.|.+.+. |. 
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  181 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  181 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence            99999999999999999987321     11233456777642      2222111111123368999999999875 54 


Q ss_pred             CeEEEEeCCCcccccC---------------ceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652        213 PTISWRRDNSAALSTG---------------GSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR  260 (384)
Q Consensus       213 ~~v~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  260 (384)
                      +.+.|++++..+....               +.......|.|.....+| .|.|+|.|.|....
T Consensus       182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            6999999987654321               111223458888877754 77899999996543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.81  E-value=4.6e-19  Score=143.86  Aligned_cols=170  Identities=18%  Similarity=0.286  Sum_probs=113.7

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL-----------------STGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                 ...+....      ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45688999999999998765  5789999864  2110                 01122111      24899999999


Q ss_pred             CCCeEEEEEEEeCCC-----C--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECC
Q psy16652        245 TDRGTYYCVAQNGVG-----R--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDG  311 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~  311 (384)
                      +|+|.|.|.+.+..+     .  .......|.|..    +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  168 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA  168 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTS
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCC
Confidence            999999999998754     1  112345677764    3555543433345689999999999986 776 99999998


Q ss_pred             EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        312 VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      ..+... .........+.....+.|.|.....+| |.|+|.|.|..+.....
T Consensus       169 ~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  218 (225)
T 1op3_H          169 LTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  218 (225)
T ss_dssp             CCTTCE-ECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred             CcCCeE-ecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence            653211 000000111111224568999988888 99999999987765544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=1.5e-18  Score=145.94  Aligned_cols=176  Identities=19%  Similarity=0.321  Sum_probs=117.6

Q ss_pred             ceEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-----------------ccCceeEe------ccEEEEcCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-----------------STGGSIYR------GNILKIPNIT  243 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-----------------~~~~~~~~------~~~l~i~~~~  243 (384)
                      ....+.+|++++|.|.+.+.+  .+.+.|++++..  ..                 ...+....      ...|.|.+++
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  113 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT  113 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence            356789999999999998764  578999996421  10                 01122111      2479999999


Q ss_pred             CCCCeEEEEEEEeCCCC----ceeeEEEEEEEecC---------------eEEecCCCcccccCCcEEEEEEEeccCCCe
Q psy16652        244 KTDRGTYYCVAQNGVGR----GMKRNIAVEVEFAP---------------VITINRPRQGQALQYDAILECHVEAYPPPA  304 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  304 (384)
                      .+|+|.|+|.+.+..+.    .......|.|..+|               .+...+....+.+|+.++|.|.+.+.| +.
T Consensus       114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~  192 (282)
T 1qok_A          114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SY  192 (282)
T ss_dssp             GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SC
T ss_pred             hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ce
Confidence            99999999999987651    11233466666543               334445556788999999999999988 89


Q ss_pred             EEEEE--CCEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEEEEe
Q psy16652        305 IVWIK--DGVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIELFDR  369 (384)
Q Consensus       305 v~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  369 (384)
                      +.|++  +|..+.            ...++....     .....+|+|.+++.+|+|.|.|.|.|..+.. .....|.|.
T Consensus       193 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          193 MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEecCCCCcccCCeEEec-----CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            99999  554431            123333221     1134579999999999999999999864322 223566666


Q ss_pred             eee
Q psy16652        370 ETQ  372 (384)
Q Consensus       370 ~~~  372 (384)
                      +..
T Consensus       268 ~~~  270 (282)
T 1qok_A          268 RAA  270 (282)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.81  E-value=7.2e-19  Score=145.80  Aligned_cols=165  Identities=18%  Similarity=0.293  Sum_probs=113.5

Q ss_pred             CCceEEeecCceEEEEEEecc--cCCCeEEEEeCCCcccc-------------------cCceeEe------ccEEEEcC
Q psy16652        189 STRSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAALS-------------------TGGSIYR------GNILKIPN  241 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~-------------------~~~~~~~------~~~l~i~~  241 (384)
                      .+..+.+.+|++++|.|.+.+  .+.+.+.|++.......                   ..+....      ...|.|.+
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   91 (256)
T 3juy_B           12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   91 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence            356677999999999999977  35678999974311100                   0111111      23699999


Q ss_pred             CCCCCCeEEEEEEEeC-----------CCCceeeEEEEEEEe---------------cCeEEecCCCcccccCCcEEEEE
Q psy16652        242 ITKTDRGTYYCVAQNG-----------VGRGMKRNIAVEVEF---------------APVITINRPRQGQALQYDAILEC  295 (384)
Q Consensus       242 ~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C  295 (384)
                      ++.+|+|.|.|.+.+.           ..........|.|..               +|.+...+....+.+|+.++|.|
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  171 (256)
T 3juy_B           92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSC  171 (256)
T ss_dssp             CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEE
T ss_pred             CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEE
Confidence            9999999999999986           112223345666765               34455556677888999999999


Q ss_pred             EEeccCC-CeEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        296 HVEAYPP-PAIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       296 ~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .+.+.|. +.+.|++.  +..+.            ...++....     .....+|+|.+++.+|+|.|.|.|.|..+
T Consensus       172 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          172 RSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG-----SGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             EESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             EECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc-----cCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            9998776 89999983  22211            122333221     11345699999999999999999999644

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.81  E-value=3.5e-18  Score=141.60  Aligned_cols=177  Identities=16%  Similarity=0.224  Sum_probs=119.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc---------------cCceeE------eccEEEEcCCCCCCCe
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS---------------TGGSIY------RGNILKIPNITKTDRG  248 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---------------~~~~~~------~~~~l~i~~~~~~d~G  248 (384)
                      +..+.+.+|+++.|.|.+.+.+.+.+.|++.......               ..+...      ...+|.|.+++.+|+|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG   89 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA   89 (256)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred             CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence            5567789999999999998888899999984321100               011111      1337999999999999


Q ss_pred             EEEEEEEeCCCCc---eeeEEEEEEEe--------------------cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652        249 TYYCVAQNGVGRG---MKRNIAVEVEF--------------------APVITINRPRQGQALQYDAILECHVEAYPPPAI  305 (384)
Q Consensus       249 ~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  305 (384)
                      .|+|.+.+..+..   ......|.|..                    +|.+...+....+.+|+.++|.|.+.+. .+.+
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v  168 (256)
T 3tf7_C           90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYM  168 (256)
T ss_dssp             EEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSEE
T ss_pred             EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEE
Confidence            9999999865421   12234566654                    4556666666777899999999999886 6799


Q ss_pred             EEEECC--EEe---c------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE--EEEE
Q psy16652        306 VWIKDG--VQI---M------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK--EIEL  366 (384)
Q Consensus       306 ~W~~~~--~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l  366 (384)
                      .|++..  ..+   .            ..+++....    ......+|+|.+++.+|+|.|.|.|.|..|....  -..|
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l  244 (256)
T 3tf7_C          169 YWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR----TTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKL  244 (256)
T ss_dssp             EEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC----CSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEE
T ss_pred             EEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe----CCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEE
Confidence            999832  111   0            011222111    1123567999999999999999999998774422  2345


Q ss_pred             EEeee
Q psy16652        367 FDRET  371 (384)
Q Consensus       367 ~v~~~  371 (384)
                      .|...
T Consensus       245 ~v~~~  249 (256)
T 3tf7_C          245 TVLEL  249 (256)
T ss_dssp             EEECG
T ss_pred             EEEcc
Confidence            55544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.81  E-value=2.3e-18  Score=139.46  Aligned_cols=171  Identities=16%  Similarity=0.282  Sum_probs=115.2

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++...  ...                 ...+....      ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            45688999999999998754  46899998542  110                 01112111      23799999999


Q ss_pred             CCCeEEEEEEEeCCC---C--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEE-CCE
Q psy16652        245 TDRGTYYCVAQNGVG---R--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIK-DGV  312 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~-~~~  312 (384)
                      +|+|.|.|.+.+..+   .  .......|.|..    +|.+...++...+..|+.++|.|.+.+. |.+ .+.|++ +|.
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~  168 (223)
T 1dee_B           89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNS  168 (223)
T ss_dssp             GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred             HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCC
Confidence            999999999998643   1  112334677763    4555543333445789999999999886 777 999999 888


Q ss_pred             EecCCCceeee-eeeccCccccceEEEeecCC--CCCeEEEEEEEeCCcceEEEE
Q psy16652        313 QIMNNQHYSVS-HFATSDEFSDTSLRVITIER--RQFGQYACKAANKYGSAQKEI  364 (384)
Q Consensus       313 ~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~  364 (384)
                      .+.. . .... ....+.....+.|+|.....  +|.|.|+|.|.|..|.....+
T Consensus       169 ~l~~-~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          169 DISS-T-RGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             BCSC-E-EECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             ccce-e-EECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            7754 1 0000 00111112245688887776  789999999999999877654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.80  E-value=1.4e-18  Score=141.57  Aligned_cols=180  Identities=16%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc----------------ccCceeEe------ccEEEEcCCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL----------------STGGSIYR------GNILKIPNITKT  245 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~----------------~~~~~~~~------~~~l~i~~~~~~  245 (384)
                      ...+.+|++++|.|.+.+.+  .+.+.|++...  ...                ...+....      ...|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence            35688999999999997754  56899998542  110                01122111      128999999999


Q ss_pred             CCeEEEEEEEeCC--CC---ceeeEEEEEEEe----cCeEEecCCCcccccC-CcEEEEEEEecc-CCC-eEEEEE-CCE
Q psy16652        246 DRGTYYCVAQNGV--GR---GMKRNIAVEVEF----APVITINRPRQGQALQ-YDAILECHVEAY-PPP-AIVWIK-DGV  312 (384)
Q Consensus       246 d~G~Y~C~~~~~~--~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~v~W~~-~~~  312 (384)
                      |+|.|.|.+.+..  +.   .......|.|..    +|.+....+...+..| +.++|.|.+.+. |.+ .+.|++ +|.
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~  168 (232)
T 1dn0_B           89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS  168 (232)
T ss_dssp             GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred             cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence            9999999998421  11   112335677754    3555443333334577 899999999885 776 999999 988


Q ss_pred             EecCCCceeeeeeeccCccccceEEEeecCC--CCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        313 QIMNNQHYSVSHFATSDEFSDTSLRVITIER--RQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .+.. ..........+.....+.|.|.....  +|.|.|+|.|.|..+.......+.|..+.
T Consensus       169 ~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~~~  229 (232)
T 1dn0_B          169 DISS-TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIAEL  229 (232)
T ss_dssp             EECC-EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC----
T ss_pred             ceee-EEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCCCC
Confidence            8754 10000000111112245688888876  78999999999999988777777766543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.80  E-value=5.8e-20  Score=150.15  Aligned_cols=166  Identities=17%  Similarity=0.248  Sum_probs=112.4

Q ss_pred             eecCceEEEEEEeccc---CCC-eEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        195 VSEGQTVYLYCYANGF---PAP-TISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~---~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.+|++++|.|.+.+.   |.+ .+.|++++..+...         .+.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            5689999999999876   666 89999988654321         1112234579999999999999999999987653


Q ss_pred             -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652        262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (384)
                       ..+.+.+  .+..+|.+.+.+.......|+.++|.|.+.| +|+ +.+.|++||..+.............+.....+.|
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l  188 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKL  188 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEE
Confidence             2223332  4556788776655544445889999999998 555 3899999999885322111111111111222345


Q ss_pred             EEeecCCCCCeEEEEEEEeCCcce
Q psy16652        337 RVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      .|.....+|.|.|+|.|.|.....
T Consensus       189 ~v~~~~~~~~g~YtC~v~n~~l~~  212 (239)
T 1i1c_A          189 NVKKETWQQGNTFTCSVLHEGLEN  212 (239)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EEChhhcCCCCEEEEEEECCCCCC
Confidence            565555667999999999987654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.80  E-value=1.3e-18  Score=143.45  Aligned_cols=172  Identities=17%  Similarity=0.223  Sum_probs=117.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCC----------------Cccccc---CceeE-----eccEEEEcCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN----------------SAALST---GGSIY-----RGNILKIPNITKT  245 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~----------------~~~~~~---~~~~~-----~~~~l~i~~~~~~  245 (384)
                      +..+.+.+|+++.|.|.+.+.+.+.+.|++..                ......   .+...     ....|.|.+++.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   87 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE   87 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence            45567899999999999988888899999822                111111   11111     1237999999999


Q ss_pred             CCeEEEEEEEeCCC---CceeeEEEEEEEe------cCeEEec-CCCcccccCCcEEEEEEEeccCCC--eEEEEECCEE
Q psy16652        246 DRGTYYCVAQNGVG---RGMKRNIAVEVEF------APVITIN-RPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQ  313 (384)
Q Consensus       246 d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~  313 (384)
                      |+|.|+|.+.+..+   ........|.|..      +|.+.+. +....+..|+.++|.|.+.|.|++  .+.|+++|..
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  167 (246)
T 4dzb_B           88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  167 (246)
T ss_dssp             GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence            99999999987532   1122344566653      5665543 334456679999999999986655  8999999999


Q ss_pred             ecCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652        314 IMNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ  361 (384)
Q Consensus       314 ~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  361 (384)
                      +...........      ..+.....+.|.|.....+| .|.|+|.|.|......
T Consensus       168 l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          168 VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            875433221111      01111123458888888888 9999999999877665

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.80  E-value=2.4e-19  Score=148.82  Aligned_cols=179  Identities=17%  Similarity=0.227  Sum_probs=114.4

Q ss_pred             eEEeecCceEEEEEEeccc--CCCeEEEEeCCCccc--c----------------cCceeEe------ccEEEEcCCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAAL--S----------------TGGSIYR------GNILKIPNITKT  245 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~--~----------------~~~~~~~------~~~l~i~~~~~~  245 (384)
                      ...+.+|++++|.|.+.+.  +.+.+.|++......  .                ..+....      ...|.|.+++.+
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   96 (257)
T 3gkz_A           17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE   96 (257)
T ss_dssp             CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence            3458899999999999873  467899998432110  0                0111111      127999999999


Q ss_pred             CCeEEEEEEEeCCCCc---eeeEEEEEEEec--------------CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEE
Q psy16652        246 DRGTYYCVAQNGVGRG---MKRNIAVEVEFA--------------PVITINRPRQGQALQYDAILECHVEAYPPP-AIVW  307 (384)
Q Consensus       246 d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W  307 (384)
                      |+|.|+|.+.+..+..   ......|.|..+              +.+...+....+.+|+.++|.|.+.+.+.+ .+.|
T Consensus        97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W  176 (257)
T 3gkz_A           97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYW  176 (257)
T ss_dssp             GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEE
T ss_pred             hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEE
Confidence            9999999999862211   233455666654              445555555778899999999999998887 8999


Q ss_pred             EEC--CEEec---C---------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEEeeee
Q psy16652        308 IKD--GVQIM---N---------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFDRETQ  372 (384)
Q Consensus       308 ~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~  372 (384)
                      +++  +..+.   .         ..++....     .....+|+|.+++.+|+|.|.|.|.|.....- .-..|.|...+
T Consensus       177 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          177 YQQKPGSSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred             EEECCCCCcEEEEEEccccCCCcCCCEEEec-----CCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence            983  22211   0         12222211     11345699999999999999999998543221 12356666554


Q ss_pred             cCC
Q psy16652        373 TGD  375 (384)
Q Consensus       373 ~~~  375 (384)
                      +.|
T Consensus       252 ~~~  254 (257)
T 3gkz_A          252 HHH  254 (257)
T ss_dssp             ---
T ss_pred             CCC
Confidence            443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.80  E-value=2.3e-19  Score=143.01  Aligned_cols=153  Identities=16%  Similarity=0.251  Sum_probs=104.6

Q ss_pred             eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         84 KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      +.+|++|+|.|.+   +.+.+.|+|++...       .       ..      .   ....+|.|.+++.+|+|.|+|.+
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l-------~-------~~------~---~~~~~L~i~~v~~~DsG~Y~C~~   68 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMI-------G-------FL------T---EDKKKWNLGSNAKDPRGMYQCKG   68 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEE-------E-------EE------E---SSCCCEEEEEGGGCCEEEEEEES
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEEC-------C-------CC------C---CCCCeEEeCCCCcCCCEEEEEEe
Confidence            4689999999998   67799999976431       0       00      0   11236999999999999999996


Q ss_pred             EEccCcceeeeEEEEEec-------------------------------CCccccCCCceEEeecCceEEEEEEecccCC
Q psy16652        164 IISLNNKVSAEVELIVRR-------------------------------PPIISDNSTRSVIVSEGQTVYLYCYANGFPA  212 (384)
Q Consensus       164 ~~~~~~~~~~~~~l~v~~-------------------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  212 (384)
                      .+    ..+..+.|.+..                               ++.+. . .+.....+|+++.|.|.  +.|.
T Consensus        69 ~~----~~s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~p~~v~~~G~~v~L~C~--g~p~  140 (204)
T 1sy6_A           69 SQ----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-Q-TPYKVSISGTTVILTCP--QYPG  140 (204)
T ss_dssp             SS----SCCCCEEEEEEC-------------------------------------C-CCCEEEEETTEEEEECS--CCCS
T ss_pred             cC----CCCeeEEEEEEEecccccccccccccccccccccccccccccccccee-c-CCceeeecCCcEEEEcC--CCCC
Confidence            32    122334454430                               11111 1 11222238999999998  7788


Q ss_pred             CeEEEEeCCCcccccC---ceeEeccEEEEcCC-CCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652        213 PTISWRRDNSAALSTG---GSIYRGNILKIPNI-TKTDRGTYYCVAQNGVGRGMKRNIAVEV  270 (384)
Q Consensus       213 ~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  270 (384)
                      +.+.|++++..+....   .....+..|.|.++ +.+|+|.|+|.|.|..|...+..+.|.+
T Consensus       141 p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          141 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             SCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             CceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            8999999987764431   12235789999999 9999999999999988864455555554

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.80  E-value=6.3e-19  Score=145.81  Aligned_cols=181  Identities=16%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCce---eeeCC-ceEEeeCCCCceEEEEEee
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDS-RFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~L~i~~  150 (384)
                      +...+..+.+.+|++|+|.|.+.+.+...+.|+|.........+........   ....+ |+.+..+...  . |.|.+
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~-L~I~~   80 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT--E-LRLQV   80 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSS--C-CEEEE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCC--e-EEEcc
Confidence            4455667789999999999998777788999999654322222222221111   11223 7777664322  2 99999


Q ss_pred             cCCCCCeeEEEEEEEccCc-----ceeeeEEEEEecC------CccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652        151 IQETDAGIYKCEVIISLNN-----KVSAEVELIVRRP------PIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW  217 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W  217 (384)
                      ++.+|+|.|+|.+.+..++     .......|.|...      |.+....+....+..|+.+.|.|.+.+ +|.+ .+.|
T Consensus        81 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W  160 (253)
T 3to4_D           81 ANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (253)
T ss_dssp             ESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence            9999999999999754321     2233456666532      221111111111224689999999988 6666 8999


Q ss_pred             EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCC
Q psy16652        218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGV  258 (384)
Q Consensus       218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~  258 (384)
                      ++++..+...               ++.....+.|.|.....+| +|.|+|.|.|..
T Consensus       161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            9988766432               2222233468888777777 779999999864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=2e-18  Score=141.70  Aligned_cols=164  Identities=15%  Similarity=0.178  Sum_probs=113.1

Q ss_pred             CceEEeecCceEEEEEEecccC----CCeEEEEeCCC--ccc---c---------cCceeE----eccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP----APTISWRRDNS--AAL---S---------TGGSIY----RGNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~--~~~---~---------~~~~~~----~~~~l~i~~~~~~d~  247 (384)
                      +....+.+|+++.|.|.+.+.+    .+.+.|+++..  ...   .         ..+...    ...+|.|.+++.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            4556789999999999998877    67899999632  110   0         011111    122799999999999


Q ss_pred             eEEEEEEEeCCCCceeeEEEEEEEecC------eEEecCCCcccccCCcEEEEEEEeccCC--CeEEEEEC--CEEec--
Q psy16652        248 GTYYCVAQNGVGRGMKRNIAVEVEFAP------VITINRPRQGQALQYDAILECHVEAYPP--PAIVWIKD--GVQIM--  315 (384)
Q Consensus       248 G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~--~~~~~--  315 (384)
                      |.|+|.+.+..+........|.|..++      .+...+....+.+|+.++|.|.+.+.|.  +.+.|+++  +..+.  
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~  167 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI  167 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE
T ss_pred             EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEE
Confidence            999999998755433445667776643      2333455667889999999999999874  58999995  22210  


Q ss_pred             ---------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        316 ---------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       316 ---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                                     ...++.+...   ......+|.|.+++.+|+|.|.|.|.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          168 GRIDPANGNSKYVPKFQGKATITAD---TSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             EEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             EEEcccCCccccCccccccEEEEEc---ccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence                           1123322211   1123467999999999999999999953

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.80  E-value=6.4e-18  Score=140.08  Aligned_cols=164  Identities=15%  Similarity=0.232  Sum_probs=109.6

Q ss_pred             CceEEeecCceEEEEEEeccc--CCCeEEEEeCCCc--cc------------ccCceeE----eccEEEEcCCCCCCCeE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSA--AL------------STGGSIY----RGNILKIPNITKTDRGT  249 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~--~~------------~~~~~~~----~~~~l~i~~~~~~d~G~  249 (384)
                      +....+.+|++++|.|.+.+.  +.+.+.|++....  ..            ...+...    ....|.|.+++.+|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            345778999999999999876  6779999985321  10            0011111    12379999999999999


Q ss_pred             EEEEEEeCCCCc--eeeEEEEEEEecC---------------------eEEecCCCcccccCCcEEEEEEEeccC--CCe
Q psy16652        250 YYCVAQNGVGRG--MKRNIAVEVEFAP---------------------VITINRPRQGQALQYDAILECHVEAYP--PPA  304 (384)
Q Consensus       250 Y~C~~~~~~~~~--~~~~~~l~v~~~p---------------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~  304 (384)
                      |+|.+.+..+..  ......|.|..++                     .+. .++...+.+|+.++|.|.+.+.+  .+.
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~  167 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSYA  167 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence            999999864421  2234566666544                     222 23344588999999999999876  679


Q ss_pred             EEEEEC--CEEe------c-----------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        305 IVWIKD--GVQI------M-----------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       305 v~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      +.|+++  +..+      .           ...++.+....   .....+|+|.+++.+|+|.|.|.|.|..
T Consensus       168 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          168 MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN---SKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEET---TTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecC---CCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            999986  3221      0           11233332211   1134569999999999999999999974

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.80  E-value=4.8e-19  Score=144.06  Aligned_cols=172  Identities=20%  Similarity=0.319  Sum_probs=113.1

Q ss_pred             eEEeecCceEEEEEEecccCC----CeEEEEeCC--Cccc----------------ccCceeEe------ccEEEEcCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFPA----PTISWRRDN--SAAL----------------STGGSIYR------GNILKIPNIT  243 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~  243 (384)
                      ...+.+|++++|.|.+.+.+.    +.+.|++..  ....                ...+....      ...|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   88 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD   88 (228)
T ss_dssp             CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred             ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence            346889999999999987664    789999853  2110                01111111      2589999999


Q ss_pred             CCCCeEEEEEEEeCCC------C--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEE
Q psy16652        244 KTDRGTYYCVAQNGVG------R--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIK  309 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~  309 (384)
                      .+|+|.|.|.+.+..+      .  .......|.|.    .+|.+...++...+..|+.++|.|.+.+. |.+ .+.|++
T Consensus        89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~  168 (228)
T 3bae_H           89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  168 (228)
T ss_dssp             GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEee
Confidence            9999999999998654      1  11123566666    35666554444446789999999999885 777 999999


Q ss_pred             CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      ++..+.........  ..+.....+.|.|.....+| |.|+|.|.|..|.......+
T Consensus       169 ~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          169 GSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             GTCCTTEEEEEEEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CCcccCceEcCcee--CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            88653211110111  11111234568898888866 99999999999987665554

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.80  E-value=1.5e-19  Score=147.20  Aligned_cols=166  Identities=15%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             EeecCceEEEEEEeccc-CC-C-eEEEEeCCCcc-cccC--------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        194 IVSEGQTVYLYCYANGF-PA-P-TISWRRDNSAA-LSTG--------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      .+.+|+.+.|.|.+.+. |. + .+.|++++..+ ....        +.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus        24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  103 (231)
T 2w59_A           24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL  103 (231)
T ss_dssp             HHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC
Confidence            45789999999999884 63 4 99999988776 2211        111233479999999999999999999976542


Q ss_pred             eeeEEEEEE----EecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECCEEecCCCceee--eee--------
Q psy16652        262 MKRNIAVEV----EFAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDGVQIMNNQHYSV--SHF--------  325 (384)
Q Consensus       262 ~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~--~~~--------  325 (384)
                       .....+.+    ..+|.+.+.++......+..++|.|.+.|. | .+.|.|+++|..+........  ...        
T Consensus       104 -~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~  182 (231)
T 2w59_A          104 -PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAG  182 (231)
T ss_dssp             -CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC--
T ss_pred             -ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccC
Confidence             22223322    246766654433222345679999999985 4 368999999999865541111  111        


Q ss_pred             ec-cCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        326 AT-SDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       326 ~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      .. +.....+.|.|.....+|.|.|+|.|.|.....
T Consensus       183 ~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          183 GDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             -CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             CCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            11 222234668888888889999999999987654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.80  E-value=7.9e-20  Score=146.37  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=102.5

Q ss_pred             ecCceEEEEEEecccC----CCeEEEEeCCCcccccCc---eeEecc------EEEEcCCCCCCCeEEEEEEEeCCCCc-
Q psy16652        196 SEGQTVYLYCYANGFP----APTISWRRDNSAALSTGG---SIYRGN------ILKIPNITKTDRGTYYCVAQNGVGRG-  261 (384)
Q Consensus       196 ~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~---~~~~~~------~l~i~~~~~~d~G~Y~C~~~~~~~~~-  261 (384)
                      .+|+++.|.|.+.+.+    ...+.|++++..+.....   ....++      .|.|.....+|+|.|+|.+.|..+.. 
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999998764    249999999865532210   011122      23333333445999999999976653 


Q ss_pred             eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEE
Q psy16652        262 MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLR  337 (384)
Q Consensus       262 ~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  337 (384)
                      ....+.+  .+..+|.+.+.+.......++.+.|.|.+.|. |++ .+.|+++|..+.............+.....+.|.
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~  175 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT  175 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEE
Confidence            1222322  34567777665544433456679999999984 543 8999999998753221111111111112223455


Q ss_pred             EeecCCCCCeEEEEEEEeCCcc
Q psy16652        338 VITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       338 i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      +.....+|.|.|+|.|.|....
T Consensus       176 i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          176 VDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEHHHHHTTCCEEEEEECTTSG
T ss_pred             ECHHHcCCCCEEEEEEEcCCcC
Confidence            6666667899999999998654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.79  E-value=5e-19  Score=137.96  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=107.3

Q ss_pred             cceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ..+.+.+|++|+|.|.... .+...+.|++.+..   ....+......    ....+|+.+.    ..+.+|.|.+++.+
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~---~i~~~~~~~~~~~~~~~~~~R~~l~----~~~~sL~I~~v~~~   79 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQ---KILEYFPNGKKTVFESVFKDRVDLD----KTNGALRIYNVSKE   79 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSC---EEEEECSSSCEEECSSTTTTTEEEC----TTTCCEEECSCCGG
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCe---EEEEEECCCCeeEcchhcCCeEEEe----CCCccEEEcCCCHH
Confidence            4456899999999999754 34678999985321   11111111111    0112566652    23457999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCceeEe
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYR  233 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~  233 (384)
                      |+|.|+|.+.+..  .....+.|.|..++..     +.. ...+..+.|.|.+ .+ |.+.+.|++++..+.     ...
T Consensus        80 D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~~-----P~i-~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~  145 (180)
T 2dru_A           80 DRGDYYMRMLHET--EDQWKITMEVYEMVSK-----PMI-YWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLR  145 (180)
T ss_dssp             GCEEEEEEEESSS--EEEEEEEEEEECCCCC-----CEE-EEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EES
T ss_pred             HCeEEEEEEEcCC--eEEEEEEEEEECCCCC-----CEE-EecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCC
Confidence            9999999996433  5566778888765321     122 2345779999999 66 889999999987654     123


Q ss_pred             ccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        234 GNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +.+|.+..  .+|+|.|+|.|.|..+..
T Consensus       146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          146 QKTMSYQW--TNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             SSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred             CCEEEEEE--hhcCccEEEEEecCcCcc
Confidence            44666633  789999999999987654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.79  E-value=3.6e-18  Score=140.76  Aligned_cols=164  Identities=15%  Similarity=0.221  Sum_probs=110.0

Q ss_pred             CceEEeecCceEEEEEEecccC-----CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTD  246 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d  246 (384)
                      +..+.+.+|+++.|.|.+.+.+     .+.+.|++...  ...            ...+...    ....|.|.+++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            4567789999999999998877     57899998532  110            0111111    12379999999999


Q ss_pred             CeEEEEEEEeCCCCceeeEEEEEEEecC-------------eEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEECC
Q psy16652        247 RGTYYCVAQNGVGRGMKRNIAVEVEFAP-------------VITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKDG  311 (384)
Q Consensus       247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~  311 (384)
                      +|.|+|.+.+..+........|.|..++             .....++...+.+|+.++|.|.+.+.+  .+.+.|++++
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~  167 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQA  167 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence            9999999998754322334566666542             122233444588999999999999875  5689999963


Q ss_pred             --EEec-----------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        312 --VQIM-----------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       312 --~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                        ..+.                 ...++.+...   ......+|+|.+++.+|+|.|.|.|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLD---TSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCCCcEEEEEEEcCCCccccCccccCcEEEEEe---cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence              2110                 0223332211   0113468999999999999999999996

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.79  E-value=2.4e-18  Score=141.95  Aligned_cols=179  Identities=18%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc-e---eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS-L---IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|++.........+..... +. .   ....+|+.+..+...+...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456789999999999998754  56899999764321111111111 11 1   1134688887655567789999999


Q ss_pred             CCCCCeeEEEEEEEccC----------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-
Q psy16652        152 QETDAGIYKCEVIISLN----------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-  213 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-  213 (384)
                      +.+|+|.|+|.+.+..+          .  .....+.|.|..    +|.+....+ ...+.+|+.++|.|.+.+. |.+ 
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p-~~~~~~g~~v~L~C~~~g~~P~pi  165 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPV  165 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSCC
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecC-cccccCCCcEEEEEEEeeEECCCc
Confidence            99999999999986542          1  122345777764    343332222 2235689999999999874 776 


Q ss_pred             eEEEEeCCCcccc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        214 TISWRRDNSAALS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       214 ~v~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .+.|++++..+..        ..+.......|.|.+...+| |.|+|.|.|...
T Consensus       166 ~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          166 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             EEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             EEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            9999998875321        11112223467888887777 999999999543

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.79  E-value=1e-18  Score=139.25  Aligned_cols=176  Identities=19%  Similarity=0.344  Sum_probs=111.7

Q ss_pred             ceeeeccCcEEEEEEeec----CCCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         81 EQIKDIAQTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      ++.+.+|++|+|.|.+..    .+.+.+.|++++..     +.....+..   ....+|..+..   .+..+|.|.+++.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~-----i~~~~~~~~~~~~~~~~r~~~~~---~~~~~L~I~~v~~   74 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKM-----VLTMMSGDMNIWPEYKNRTIFDI---TNNLSIVILALRP   74 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEE-----EEEEETTEEEECHHHHTTEEEES---TTTTEEEECSCCG
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcE-----EEEEeCCceeecCcccceeEEcc---CCCcEEEEecccc
Confidence            456789999999999854    24568999997543     111111110   01123333311   2345799999999


Q ss_pred             CCCeeEEEEEEEccCcce----eeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccC
Q psy16652        154 TDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTG  228 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~  228 (384)
                      +|+|.|+|.+.+..+...    ...+.|.|..++..+.  ........|+.+.|.|.+ .+.|.|.+.|++++..+....
T Consensus        75 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~--~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~  152 (201)
T 1dr9_A           75 SDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN  152 (201)
T ss_dssp             GGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCE--EEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE
T ss_pred             hhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCc--eEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc
Confidence            999999999997654433    3567777776532111  011122568899999999 489999999999987765432


Q ss_pred             ceeEe--c-cE---EEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        229 GSIYR--G-NI---LKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       229 ~~~~~--~-~~---l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      .....  . ..   ..+..+..+|.|.|+|.|.|..+.. +..+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~~  196 (201)
T 1dr9_A          153 TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTFN  196 (201)
T ss_dssp             EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEEE
T ss_pred             ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee-eeEEe
Confidence            22211  1 11   1223455689999999999988765 44433

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.79  E-value=5.5e-18  Score=132.02  Aligned_cols=150  Identities=21%  Similarity=0.271  Sum_probs=108.2

Q ss_pred             CceEEeecCceEEEEEEecc-cCCCeEEEEeC-CCccc------------cc--CceeE--eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRD-NSAAL------------ST--GGSIY--RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~-~~~~~------------~~--~~~~~--~~~~l~i~~~~~~d~G~Y~  251 (384)
                      ...+.+.+|++++|.|.+.+ .+.+.+.|++. +..+.            ..  .+...  .+..|.|.+++.+|+|.|+
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence            34567899999999999854 34679999995 22211            00  11122  3457999999999999999


Q ss_pred             EEEEeCCCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeec
Q psy16652        252 CVAQNGVGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFAT  327 (384)
Q Consensus       252 C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  327 (384)
                      |.+.+..  .....+.|.|..+   |.+..        .+..++|.|.+ .| |.|.+.|++++..+..           
T Consensus        86 C~v~~~~--~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-----------  143 (180)
T 2dru_A           86 MRMLHET--EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS-----------  143 (180)
T ss_dssp             EEEESSS--EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----------
T ss_pred             EEEEcCC--eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----------
Confidence            9998765  3466777887654   33322        34569999999 66 9999999999988751           


Q ss_pred             cCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       328 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                         ....+|.+..  .+|.|.|+|.|.|..|...+...+
T Consensus       144 ---~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          144 ---LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             ---ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ---CCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence               0244566633  789999999999999988776544

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.79  E-value=4.3e-18  Score=140.95  Aligned_cols=180  Identities=16%  Similarity=0.254  Sum_probs=117.6

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++|+|.|.+.+.+  ...+.|+|.........+..... +..    ....+|+.+..+.......|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            35677799999999999998765  57899999864211111111110 110    112468877764445678999999


Q ss_pred             cCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCC
Q psy16652        151 IQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNS  222 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~  222 (384)
                      ++.+|+|.|+|.+.+....  .....+.|.|..    +|.+....+. ..+.+|+.+.|.|.+.+ +|.+ .+.|++++.
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            9999999999999854321  122445777764    2333221111 12567999999999987 4766 999999886


Q ss_pred             ccccc--C-----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        223 AALST--G-----GSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       223 ~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .+...  .     +.......|.|.....+| |.|+|.|.|...
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            54211  0     122234579999888878 999999999543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.78  E-value=6.2e-18  Score=131.54  Aligned_cols=160  Identities=16%  Similarity=0.187  Sum_probs=107.8

Q ss_pred             cceeeeccCcEEEEEEeec--CCCccEEEEE--eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQY--ADDYPVIWMK--MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      ..+.+.+|++|+|.|....  .+...+.|++  ++....    .+..........+|+.+..     +.+|.|.+++.+|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~----~~~~~~~~~~~~~R~~~~~-----ngsL~I~~v~~~D   77 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIA----QFRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDD   77 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEE----EECGGGCEEESCTTEEECT-----TSCEEECSCCGGG
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEE----EEeCccCCCCCCCeEEECC-----CCCEEECCCChhh
Confidence            4456789999999995432  3466899999  543210    0111111112456766653     2279999999999


Q ss_pred             CeeEEEEEEEccCcce-eeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652        156 AGIYKCEVIISLNNKV-SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG  234 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  234 (384)
                      +|.|+|.+.+..+... ...+.|.|..+..     .+... ..+..+.|.|.+.+.|.+.+.|++++..+ .     ...
T Consensus        78 sG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~-----~P~i~-~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~-----~~~  145 (182)
T 1hnf_A           78 QDIYKVSIYDTKGKNVLEKIFDLKIQERVS-----KPKIS-WTCINTTLTCEVMNGTDPELNLYQDGKHL-K-----LSQ  145 (182)
T ss_dssp             CEEEEEEEEETTSCEEEEEEEEEEEECCCC-----CCEEE-EETTTTEEEEECSSCSSCEEEEEESSCEE-E-----EES
T ss_pred             CEEEEEEEEeCCCceeEEEEEEEEEcCcCC-----CCEEE-EccCcEEEEeEccCCCCCEEEEEECCEEC-C-----CCC
Confidence            9999999987655432 3567788875421     11222 23447999999988888899999998876 1     123


Q ss_pred             cEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        235 NILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ..|.+.. ..+|+|.|+|.|.|..+..
T Consensus       146 ~~i~~~~-~~~d~G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          146 RVITHKW-TTSLSAKFKCTAGNKVSKE  171 (182)
T ss_dssp             SCEEEEC-CSCEEEEEEEEEECSSCEE
T ss_pred             cEEEEec-ccCCCcEEEEEEEeCCCCc
Confidence            3444433 4789999999999998875

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.78  E-value=2.3e-18  Score=140.97  Aligned_cols=183  Identities=15%  Similarity=0.252  Sum_probs=113.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +...+..+.+.+|++|+|.|.+. .+...+.|+|.+.......+.........   ...+|+.+..+ .....+|.|.++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v   79 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELA   79 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecC
Confidence            34557778899999999999984 35678999997643211111111111111   12467777653 356789999999


Q ss_pred             CCCCCeeEEEEEEEccC----cceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEe
Q psy16652        152 QETDAGIYKCEVIISLN----NKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRR  219 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~  219 (384)
                      +.+|+|.|+|.+.+..+    ........|.|..      +|.+....+....+.+|+.+.|.|.+.+. |.+ .+.|++
T Consensus        80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~  159 (238)
T 1bec_A           80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV  159 (238)
T ss_dssp             CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred             CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence            99999999999985421    1122345677764      23332222222234579999999999885 655 999999


Q ss_pred             CCCcccccCce----e-Eecc------EEEEcCCCCCC-CeEEEEEEEeCCC
Q psy16652        220 DNSAALSTGGS----I-YRGN------ILKIPNITKTD-RGTYYCVAQNGVG  259 (384)
Q Consensus       220 ~~~~~~~~~~~----~-~~~~------~l~i~~~~~~d-~G~Y~C~~~~~~~  259 (384)
                      ++..+......    . ..+.      .|.|......| .|.|+|.|.|...
T Consensus       160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            88765433211    1 1222      34444333333 6789999999643

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.78  E-value=1.8e-18  Score=121.95  Aligned_cols=96  Identities=24%  Similarity=0.327  Sum_probs=82.6

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++||..+..+.++.+....     ....|.|.+++.+|+|.|+|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C   86 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG-----AEHGLLLTAALPTDAGVYVC   86 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEET-----TEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecC-----ceEEEEEecCChhhCEEEEE
Confidence            3677777777888999999999999999999999999999999888877654311     34579999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeee
Q psy16652        352 KAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .|.|..|....++.|.|.++|
T Consensus        87 ~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           87 RARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEETTEEEEEEEEEEEEC--
T ss_pred             EEEECCCEEEEEEEEEEEcCC
Confidence            999999999999999998764

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.78  E-value=1.3e-19  Score=147.61  Aligned_cols=199  Identities=14%  Similarity=0.176  Sum_probs=112.4

Q ss_pred             eeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE-eecCceEEEEEEecccC----CCeEEEEeCCCccccc----
Q psy16652        157 GIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI-VSEGQTVYLYCYANGFP----APTISWRRDNSAALST----  227 (384)
Q Consensus       157 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~----  227 (384)
                      |.|.|.+.+.....   ..... ..+|.+....+.... +..|+.+.|.|.+.+..    ...+.|++++..+...    
T Consensus         1 ~~~~~~~~~~~~~c---~~~~~-~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~   76 (240)
T 4acp_A            1 GTKSCDKTHTCPPC---PAPEL-LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP   76 (240)
T ss_dssp             --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred             CceeeeeeecCCCC---Ccccc-CCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence            67889887543321   11111 112333222233333 45699999999998854    2379999998765321    


Q ss_pred             -----CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec
Q psy16652        228 -----GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA  299 (384)
Q Consensus       228 -----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~  299 (384)
                           ++.....+.|.|.....+|+|.|+|.|.|..+.. ..+.+.+  .+..+|.+.+.+.......|+.+.|.|.+.+
T Consensus        77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~g  156 (240)
T 4acp_A           77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKG  156 (240)
T ss_dssp             CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEE
T ss_pred             ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeE
Confidence                 1122223468887777778999999999976532 2333332  2446788777666554445899999999998


Q ss_pred             -cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        300 -YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       300 -~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                       +|.+ .+.|+++|..+.............+.....+.|.+......|.|.|+|.|.+..-.
T Consensus       157 f~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~  218 (240)
T 4acp_A          157 FYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  218 (240)
T ss_dssp             EBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence             5654 89999999987432211111122222223456777776667889999999998643

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.78  E-value=5.2e-18  Score=140.84  Aligned_cols=182  Identities=17%  Similarity=0.243  Sum_probs=112.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc---ccC--------------ce------eEeccEEEEcCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL---STG--------------GS------IYRGNILKIPNITK  244 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~---~~~--------------~~------~~~~~~l~i~~~~~  244 (384)
                      +..+.+.+|++++|.|.+.+.+.+.+.|++...  ...   ...              +.      ......|.|.+++.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   88 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE   88 (259)
T ss_dssp             --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred             CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence            456778999999999999888888999998321  110   000              00      01234699999999


Q ss_pred             CCCeEEEEEEEeCCCC--ceeeEEEEEEEec-----------------CeEEecCCCcccccCCcEEEEEEEecc-CCCe
Q psy16652        245 TDRGTYYCVAQNGVGR--GMKRNIAVEVEFA-----------------PVITINRPRQGQALQYDAILECHVEAY-PPPA  304 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~  304 (384)
                      +|+|.|+|.+.+..+.  .......|.|..+                 |.+...+....+.+|+.++|.|.+.+. |.+.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  168 (259)
T 3omz_A           89 NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY  168 (259)
T ss_dssp             GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCE
T ss_pred             ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCce
Confidence            9999999999986552  2233455666652                 455555666788999999999999874 7789


Q ss_pred             EEEEECCE--Eec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc-e----EEEEE
Q psy16652        305 IVWIKDGV--QIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS-A----QKEIE  365 (384)
Q Consensus       305 v~W~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~----~~~~~  365 (384)
                      +.|++++.  .+.            ...++.+..   ........|+|.+++.+|+|.|.|.|.+..+. .    ..-..
T Consensus       169 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg~GT~  245 (259)
T 3omz_A          169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNF---KKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTR  245 (259)
T ss_dssp             EEEEEECTTCCEEEEEEEETTSCCCEETTEEECC---BGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEECCCEE
T ss_pred             EEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEE---cCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEECCCCE
Confidence            99998531  110            012222211   01123467999999999999999999864221 1    11235


Q ss_pred             EEEeeeecC
Q psy16652        366 LFDRETQTG  374 (384)
Q Consensus       366 l~v~~~~~~  374 (384)
                      |.|.+.++.
T Consensus       246 l~v~~~~~~  254 (259)
T 3omz_A          246 VTVEPRSQH  254 (259)
T ss_dssp             EEEEC----
T ss_pred             EEEeeCccc
Confidence            666665543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.78  E-value=4e-18  Score=137.99  Aligned_cols=170  Identities=18%  Similarity=0.327  Sum_probs=110.0

Q ss_pred             ceEEeecCceEEEEEEecccC--CCeEEEEeCCCcccc---------------------cCceeEe------ccEEEEcC
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALS---------------------TGGSIYR------GNILKIPN  241 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~---------------------~~~~~~~------~~~l~i~~  241 (384)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++.......                     ..+....      ...|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            345688999999999997643  568999974321100                     0111111      12699999


Q ss_pred             CCCCCCeEEEEEEEeCCC-CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCC-C-eEEEEECCEE
Q psy16652        242 ITKTDRGTYYCVAQNGVG-RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPP-P-AIVWIKDGVQ  313 (384)
Q Consensus       242 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~v~W~~~~~~  313 (384)
                      ++.+|+|.|.|.+.+... ........|.|.    .+|.+....+... ..|+.++|.|.+.+ .|. + .+.|+++|..
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~  166 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQG  166 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence            999999999999998631 222333455554    3455542222222 78999999999988 776 4 8999999876


Q ss_pred             ecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        314 IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      +.............+.....+.|+|.....+|.|.|+|.|.|..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          167 VTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             CEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            632110000000111111235689999999999999999999987644

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.78  E-value=9.7e-18  Score=135.04  Aligned_cols=179  Identities=21%  Similarity=0.280  Sum_probs=113.4

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +....+.+|++|+|.|.+.+.+  ...+.|++.........+.....+...    ...+|+.+..+...+..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            5566789999999999998753  578999997643221212211111111    1246888776545567899999999


Q ss_pred             CCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy16652        153 ETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAA  224 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~  224 (384)
                      .+|+|.|+|.+.+..+.  .....+.|.|..    +|.+....+. ..+.+|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            99999999999754321  223446777763    2322211111 124679999999999875 777 99999988653


Q ss_pred             cccC-------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        225 LSTG-------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       225 ~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ....       +.......|.  ....+| |.|+|.+.|..+..
T Consensus       166 ~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~  206 (215)
T 1c5d_H          166 DVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASST  206 (215)
T ss_dssp             SCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTE
T ss_pred             ceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCc
Confidence            2111       1111112333  344456 99999999977653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.78  E-value=8.9e-18  Score=139.62  Aligned_cols=164  Identities=14%  Similarity=0.212  Sum_probs=111.3

Q ss_pred             CceEEeecCceEEEEEEecccC------CCeEEEEeCC--Cccc------------ccCceeEe----ccEEEEcCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP------APTISWRRDN--SAAL------------STGGSIYR----GNILKIPNITKT  245 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~------~~~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~  245 (384)
                      +..+.+.+|++++|.|.+.+.+      .+.+.|++..  ..+.            ...+....    ...|.|.+++.+
T Consensus        12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   91 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE   91 (264)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence            4567789999999999998876      5689999853  2111            01112111    238999999999


Q ss_pred             CCeEEEEEEEeCCCCceeeEEEEEEEecC------------------eE-EecCCCcccccCCcEEEEEEEeccCC--Ce
Q psy16652        246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAP------------------VI-TINRPRQGQALQYDAILECHVEAYPP--PA  304 (384)
Q Consensus       246 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~~~p~--~~  304 (384)
                      |+|.|.|.+.+..+........|.|..+|                  .+ ...++...+.+|+.++|.|.+.+.+.  +.
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  171 (264)
T 2gjj_A           92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYF  171 (264)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeE
Confidence            99999999998654322334567776653                  12 12233346889999999999998764  79


Q ss_pred             EEEEECC--EE---ec----C----------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        305 IVWIKDG--VQ---IM----N----------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       305 v~W~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      +.|+++.  ..   +.    .          ..++.+...   .......|+|.+++.+|+|.|.|.|.|.
T Consensus       172 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          172 INWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD---TSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc---CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9999863  21   11    0          122222211   1123568999999999999999999995

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=5.7e-18  Score=139.02  Aligned_cols=176  Identities=19%  Similarity=0.239  Sum_probs=114.1

Q ss_pred             CceEEeecCceEEEEEEeccc--CCCeEEEEeCC--Cccc-----------------ccCceeE------eccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDN--SAAL-----------------STGGSIY------RGNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~~~-----------------~~~~~~~------~~~~l~i~~~  242 (384)
                      +..+.+.+|++++|.|.+.+.  +.+.+.|++..  ....                 ...+...      ....|.|.++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCC
Confidence            556778999999999999764  56789999854  2110                 0111111      1347999999


Q ss_pred             CCCCCeEEEEEEEeCCC-C-----ceeeEEEEEEEec-------CeEEec-CCCcccccCCcEEEEEEEecc-CC-CeEE
Q psy16652        243 TKTDRGTYYCVAQNGVG-R-----GMKRNIAVEVEFA-------PVITIN-RPRQGQALQYDAILECHVEAY-PP-PAIV  306 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~v~  306 (384)
                      +.+|+|.|.|.+.+... .     .......|.|...       |...+. +....+..|+.++|.|.+.|. |. +.+.
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~  167 (242)
T 1hxm_B           88 EKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIH  167 (242)
T ss_dssp             CGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEE
T ss_pred             CcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEE
Confidence            99999999999998531 1     1123456777652       333332 233445679999999999986 64 6899


Q ss_pred             EEECCE-EecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        307 WIKDGV-QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       307 W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      |++++. .+......... ...+.....+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus       168 W~~~~~~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          168 WEEKKSNTILGSQEGNTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEESSSCCCCCCEECCCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEcCCCEeecCcccccee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            999987 55332111111 1111122235688877665 4 9999999999988755555554

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.77  E-value=1.8e-18  Score=142.93  Aligned_cols=175  Identities=18%  Similarity=0.308  Sum_probs=114.4

Q ss_pred             eEEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc-------------------cCceeE------eccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS-------------------TGGSIY------RGNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~-------------------~~~~~~------~~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+.  +...+.|++.......                   ..+...      ....|.|.+++.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS   88 (253)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            4568899999999999663  3467999985321100                   011111      122599999999


Q ss_pred             CCCeEEEEEEEeCCC---CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEec
Q psy16652        245 TDRGTYYCVAQNGVG---RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIM  315 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~---~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~  315 (384)
                      +|+|.|.|.+.+...   ........|.|.    .+|.+...++...+..|+.++|.|.+.+ +|.+ .+.|++++..+.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~  168 (253)
T 3liz_H           89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  168 (253)
T ss_dssp             GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecc
Confidence            999999999987531   111233456665    4666665555555667999999999988 6766 899999986431


Q ss_pred             CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      ...... . ...+.....+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       169 ~~~~~~-~-~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          169 VHTFPA-V-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             EEECCC-E-EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             eEeCCc-c-ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            110000 0 011112234679999999999 99999999999988888887766

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.77  E-value=7.9e-18  Score=142.07  Aligned_cols=177  Identities=15%  Similarity=0.280  Sum_probs=115.0

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+.+  .+.+.|++...  ...                 ...+....      ...|.|.+++.
T Consensus        31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  110 (291)
T 2gki_A           31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS  110 (291)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred             cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence            46788999999999998765  46899998642  110                 00111111      24799999999


Q ss_pred             CCCeEEEEEEEeCC-CCc---eeeEEEEEEEe----------------cCeEEecCCCcccccCCcEEEEEEEeccCCC-
Q psy16652        245 TDRGTYYCVAQNGV-GRG---MKRNIAVEVEF----------------APVITINRPRQGQALQYDAILECHVEAYPPP-  303 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~-~~~---~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-  303 (384)
                      +|+|.|+|.+.+.. +..   ......|.|..                ++.+...+....+.+|+.++|.|.+.+.|.+ 
T Consensus       111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  190 (291)
T 2gki_A          111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNS  190 (291)
T ss_dssp             GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEET
T ss_pred             HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccc
Confidence            99999999999864 211   11234566655                2233333445678899999999999988775 


Q ss_pred             -----eEEEEECC--EE---ecC---------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EE
Q psy16652        304 -----AIVWIKDG--VQ---IMN---------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KE  363 (384)
Q Consensus       304 -----~v~W~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~  363 (384)
                           .+.|++++  ..   +..         ..++....     .....+|+|.+++.+|+|.|.|.|.|...-.- .-
T Consensus       191 ~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g  265 (291)
T 2gki_A          191 RTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG  265 (291)
T ss_dssp             TTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             cccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe-----cCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCC
Confidence                 89999963  21   110         22333211     11345799999999999999999999643211 12


Q ss_pred             EEEEEeeeec
Q psy16652        364 IELFDRETQT  373 (384)
Q Consensus       364 ~~l~v~~~~~  373 (384)
                      ..|.|+..+.
T Consensus       266 t~l~v~~~~~  275 (291)
T 2gki_A          266 TKLEIKHHHH  275 (291)
T ss_dssp             EEEEEECC--
T ss_pred             EEEEEEeeEc
Confidence            3556655543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.77  E-value=1.9e-17  Score=135.76  Aligned_cols=172  Identities=13%  Similarity=0.215  Sum_probs=114.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc--------------c---cCceeE-----eccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL--------------S---TGGSIY-----RGNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--------------~---~~~~~~-----~~~~l~i~~~~~~d~  247 (384)
                      +..+.+.+|+++.|.|.+.+ +.+.+.|++......              .   ..+...     ....|.|.+++.+|+
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   87 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   87 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence            45577899999999999876 677999998321100              0   011111     123799999999999


Q ss_pred             eEEEEEEEeC--CCCceeeEEEEEEE------ecCeEEec-CCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecC
Q psy16652        248 GTYYCVAQNG--VGRGMKRNIAVEVE------FAPVITIN-RPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMN  316 (384)
Q Consensus       248 G~Y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~  316 (384)
                      |.|+|.+.+.  ..........|.|.      .+|.+.+. +....+..|+.++|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~  167 (240)
T 3q5y_A           88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  167 (240)
T ss_dssp             EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence            9999999832  22222334456665      45666543 33345667899999999988 6666 7999999999865


Q ss_pred             CCceee--eeeeccCccccceEEEeecCCCC-CeEEEEEEEeCCcceEE
Q psy16652        317 NQHYSV--SHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQK  362 (384)
Q Consensus       317 ~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~  362 (384)
                      ......  .....+.....+.|.|.....+| .|.|+|.|.|.......
T Consensus       168 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~  216 (240)
T 3q5y_A          168 GVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEED  216 (240)
T ss_dssp             TEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred             cEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCcc
Confidence            433211  11111112223458899988888 77999999998765543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.77  E-value=1.3e-18  Score=134.44  Aligned_cols=156  Identities=15%  Similarity=0.106  Sum_probs=103.4

Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      +.+.+.+|++|+|.|.+.. +...+.|++++..     +.....+...   ...+|+.+.    ..+.+|.|.+++.+|+
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~-----i~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~Ds   72 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDK-----VAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDE   72 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTEE-----EEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGC
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcE-----EEEEcCCCcccccccCCcEEEe----CCCCeEEECCCChhhC
Confidence            3456889999999999844 7789999997642     1111111100   123344442    2334799999999999


Q ss_pred             eeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccE
Q psy16652        157 GIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI  236 (384)
Q Consensus       157 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~  236 (384)
                      |.|+|.+.+..+   ...+.|.|..++..+     ....... ...|.|.+.+.|.+.+.|++++..+...     ....
T Consensus        73 G~Y~C~~~n~~~---~~~~~L~V~~~~~~p-----~i~~~~~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~  138 (171)
T 1ccz_A           73 DEYEMESPNITD---TMKFFLYVLEMVSKP-----MIYWECS-NATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKT  138 (171)
T ss_dssp             EEEEEECTTCCS---CEEEEEEEECCCCCC-----EEEEETT-TTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSE
T ss_pred             ceEEEEEeCCCC---cEEEEEEEECcCCCC-----EEEEecC-CcEEEEEeCCCCCcEEEEEECCEECcCC-----cceE
Confidence            999999964433   667788887653221     1111111 2379999988888999999988765432     1223


Q ss_pred             EEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        237 LKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       237 l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      |.+.  ..+|+|.|+|.|.|..+..
T Consensus       139 l~~~--~~~~~g~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          139 MSYQ--WTNLRAPFKCKAVNRVSQE  161 (171)
T ss_dssp             EEEE--CSCCSSCEEEEEEETTEEE
T ss_pred             EEEe--ccCCCceEEEEEEcccCcc
Confidence            4443  3678899999999987764

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.77  E-value=2.1e-17  Score=136.05  Aligned_cols=171  Identities=17%  Similarity=0.204  Sum_probs=113.9

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCC--C------------ccccc----CceeEe-----ccEEEEcCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN--S------------AALST----GGSIYR-----GNILKIPNITKTD  246 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~------------~~~~~----~~~~~~-----~~~l~i~~~~~~d  246 (384)
                      +..+.+.+|+++.|.| ..+.+.+.+.|++..  .            .....    .+....     ...|.|.+++.+|
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   87 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED   87 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred             CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence            4557789999999999 666677899999821  1            00000    111111     2389999999999


Q ss_pred             CeEEEEEEEeCC---CCceeeEEEEEEE------ecCeEEec-CCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEe
Q psy16652        247 RGTYYCVAQNGV---GRGMKRNIAVEVE------FAPVITIN-RPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQI  314 (384)
Q Consensus       247 ~G~Y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~  314 (384)
                      +|.|+|.+.+..   .........|.|.      .+|.+.+. +....+..|+.++|.|.+.| .|.+ .+.|+++|..+
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l  167 (245)
T 4ei6_B           88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (245)
T ss_dssp             CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence            999999999632   1122344566666      35655543 33345667999999999988 4545 89999999998


Q ss_pred             cCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652        315 MNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ  361 (384)
Q Consensus       315 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  361 (384)
                      ...........      ..+.....+.|.|.....+| .|.|+|.|.|......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          168 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             CTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            75433221110      01111123458888888888 9999999999876554

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.77  E-value=6.2e-18  Score=141.88  Aligned_cols=179  Identities=17%  Similarity=0.261  Sum_probs=113.1

Q ss_pred             CceEEeecCceEEEEEEeccc--CCCeEEEEeCCCccccc-------------------CceeEe------ccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALST-------------------GGSIYR------GNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~-------------------~~~~~~------~~~l~i~~~  242 (384)
                      +....+.+|++++|.|.+.+.  +.+.+.|++........                   .+....      ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            345678899999999999764  45789999743211000                   011111      137999999


Q ss_pred             CCCCCeEEEEEEEeC--------CCCceeeEEEEEEEe---------------cCeEEecCCCcccccCCcEEEEEEEec
Q psy16652        243 TKTDRGTYYCVAQNG--------VGRGMKRNIAVEVEF---------------APVITINRPRQGQALQYDAILECHVEA  299 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~  299 (384)
                      +.+|+|.|+|.+.+.        ..........|.|..               ++.+...+. ..+.+|+.++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            999999999999986        111122334556655               333433333 67889999999999988


Q ss_pred             -cC-CCeEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc---e
Q psy16652        300 -YP-PPAIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS---A  360 (384)
Q Consensus       300 -~p-~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~---~  360 (384)
                       .+ .+.+.|++.  +..+.            ...++....     ......|+|.+++.+|+|.|.|.+.|..+.   .
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~  240 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR-----SGNTASLTITGLQPEDEADYYCSTWDSSLSAVVF  240 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEE
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc-----cCCEEEEEECCCCHHHCEEEEEEEecCCCCceEE
Confidence             44 368999983  22211            012333221     113456999999999999999999998732   1


Q ss_pred             EEEEEEEEeeeecC
Q psy16652        361 QKEIELFDRETQTG  374 (384)
Q Consensus       361 ~~~~~l~v~~~~~~  374 (384)
                      .....|.|...+..
T Consensus       241 g~~t~l~V~~~~~~  254 (280)
T 3fku_X          241 GGGTKLTVLGQPKA  254 (280)
T ss_dssp             BCCCEEEEC-----
T ss_pred             CCCEEEEECCCCCC
Confidence            22346677665443

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.76  E-value=1e-17  Score=138.66  Aligned_cols=175  Identities=18%  Similarity=0.280  Sum_probs=115.0

Q ss_pred             CceEEeecCceEEEEEEecccC--CCeEEEEeCC--Ccccc-----------------cCceeEe------ccEEEEcCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAALS-----------------TGGSIYR------GNILKIPNI  242 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~-----------------~~~~~~~------~~~l~i~~~  242 (384)
                      +....+.+|++++|.|.+.+.+  .+.+.|++..  ..+..                 ..+....      ...|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            3456789999999999998765  5789999864  21110                 1111111      247999999


Q ss_pred             CCCCCeEEEEEEEeCCCCc--eeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEe
Q psy16652        243 TKTDRGTYYCVAQNGVGRG--MKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQI  314 (384)
Q Consensus       243 ~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~  314 (384)
                      +.+|+|.|.|.+.+..+..  ......|.|..    +|.+...++...+..|+.++|.|.+.+. |.+ .|.|++++..+
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence            9999999999999854211  12334666664    4665544444456779999999999884 776 99999998764


Q ss_pred             cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652        315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .........  ..+.....+.|.|.....+| |.|+|.|.|..........+.
T Consensus       173 ~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~~  222 (261)
T 2xqy_G          173 GVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE  222 (261)
T ss_dssp             TEEECCCEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             ceEecCcee--cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEec
Confidence            211100010  11111234678998888888 999999999877655554443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.76  E-value=1.6e-17  Score=138.72  Aligned_cols=172  Identities=15%  Similarity=0.205  Sum_probs=114.7

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------cc----CceeE-----eccEEEEcCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------ST----GGSIY-----RGNILKIPNITKTD  246 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~----~~~~~-----~~~~l~i~~~~~~d  246 (384)
                      +..+.+.+|++++|.|.+. .+.+.+.|++..  ....            ..    .+...     ....|.|.+++.+|
T Consensus        33 p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D  111 (268)
T 3pl6_D           33 PSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGD  111 (268)
T ss_dssp             CSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGG
T ss_pred             CCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCccc
Confidence            5567789999999999986 466799999832  1110            00    11111     13479999999999


Q ss_pred             CeEEEEEEEeCC-CCceeeEEEEEEEe------cCeEEec-CCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecC
Q psy16652        247 RGTYYCVAQNGV-GRGMKRNIAVEVEF------APVITIN-RPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMN  316 (384)
Q Consensus       247 ~G~Y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~  316 (384)
                      +|.|+|.+.+.. .........|.|..      +|.+.+. +....+..|+.++|.|.+.|.+++  .+.|+++|..+..
T Consensus       112 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~  191 (268)
T 3pl6_D          112 SAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  191 (268)
T ss_dssp             CEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECT
T ss_pred             CEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCC
Confidence            999999999742 22223345566664      5665543 333456679999999999985554  8999999998865


Q ss_pred             CCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceEE
Q psy16652        317 NQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQK  362 (384)
Q Consensus       317 ~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~  362 (384)
                      .........      ..+.....+.|.|.....+| .|.|+|.|.|.......
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~~  244 (268)
T 3pl6_D          192 GVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEND  244 (268)
T ss_dssp             TEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred             CeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCCc
Confidence            432211000      11111223557788887777 99999999998766543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.76  E-value=2e-17  Score=138.02  Aligned_cols=164  Identities=15%  Similarity=0.191  Sum_probs=106.6

Q ss_pred             CceEEeecCceEEEEEEecccC-----CCeEEEEeCCCc--cc------------ccCceeE----eccEEEEcCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNSA--AL------------STGGSIY----RGNILKIPNITKTD  246 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~--~~------------~~~~~~~----~~~~l~i~~~~~~d  246 (384)
                      +..+.+.+|++++|.|.+.+.+     .+.+.|++....  ..            ...+...    ....|.|.+++.+|
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  101 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED  101 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence            4456688999999999998766     478999986421  10            0111111    12379999999999


Q ss_pred             CeEEEEEEEeCCCCceeeEEEEEEEecCe-----------------------EEecCCCcccccCCcEEEEEEEeccCC-
Q psy16652        247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPV-----------------------ITINRPRQGQALQYDAILECHVEAYPP-  302 (384)
Q Consensus       247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C~~~~~p~-  302 (384)
                      +|.|+|.+.+..+........|.|...+.                       ....+....+.+|+.++|.|.+.+.++ 
T Consensus       102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~  181 (268)
T 1x9q_A          102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFG  181 (268)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred             CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccc
Confidence            99999999986443222334555554321                       112234557889999999999998764 


Q ss_pred             -CeEEEEEC--CEEec-------------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        303 -PAIVWIKD--GVQIM-------------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       303 -~~v~W~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                       +.+.|+++  +..+.                   ...++.+....   ......|+|.+++.+|+|.|.|.|.|.
T Consensus       182 ~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          182 HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD---SKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC---CCCEEEEEECCCCHHHCEEEEEEEccC
Confidence             78999985  22210                   12233332110   112457999999999999999999985

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.76  E-value=6.5e-18  Score=138.31  Aligned_cols=180  Identities=19%  Similarity=0.290  Sum_probs=115.6

Q ss_pred             CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceec------cCcee----eeCCceEEeeCCCCceE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISM------SGSLI----IHDSRFQLTTDPETSTY  144 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~  144 (384)
                      +....+.+|++|+|.|.+.+.+    ...+.|++.........+....      .+...    ...+|+.+..+......
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            5566789999999999998654    4489999976543222221111      11110    12468888765556778


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccC------------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEec
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLN------------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYAN  208 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~  208 (384)
                      +|.|.+++.+|+|.|.|.+.+..+            ........|.|..    +|.+... .....+..|+.+.|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEE-CCCCCC--TTEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEE-CCChhhccCCcEEEEEEEe
Confidence            999999999999999999975421            1123334566642    2222211 1222345699999999997


Q ss_pred             c-cCCC-eEEEEeCCCccc--------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        209 G-FPAP-TISWRRDNSAAL--------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       209 ~-~~~~-~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      + +|.+ .+.|++++..+.        ..++.....+.|.|.....+| |.|+|.|.|..+.
T Consensus       166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  226 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  226 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC
Confidence            7 5544 589999876331        112222334578898888888 9999999997654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.76  E-value=8e-18  Score=137.26  Aligned_cols=180  Identities=18%  Similarity=0.294  Sum_probs=112.9

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccE--EEEEeCCCCCCcccceec-cCc------eeeeCCceEEeeCCCCceEEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPV--IWMKMDTAKKMEPLPISM-SGS------LIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v--~W~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      +....+.+|++|+|.|.+.+.  ....+  .|++.........+.... .+.      .....+|+.+..+...+..+|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            445678999999999999753  22445  999976543222221111 111      1123468888876667788999


Q ss_pred             EeecCCCCCeeEEEEEEEccC-------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecccCC--Ce
Q psy16652        148 IKEIQETDAGIYKCEVIISLN-------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PT  214 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~  214 (384)
                      |.+++.+|+|.|.|.+.+..+       ........|.|..    +|.+... .....+..|+.+.|.|.+.+.++  ..
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L~C~~~~~~P~~~~  165 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVT  165 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEE-CC-------CEEEEEEEEEEEBSSCCE
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEe-cccccccCCCcEEEEEEEeeEeCCCeE
Confidence            999999999999999975421       1233445666652    2333211 22223567999999999977433  36


Q ss_pred             EEEEeCCCccc--------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        215 ISWRRDNSAAL--------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       215 v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.|++++..+.        ...+.....+.|.|......| |.|+|.|.|..+.
T Consensus       166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~  218 (232)
T 3qhz_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  218 (232)
T ss_dssp             EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred             EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence            88999875321        112222334578899888888 9999999997654

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.76  E-value=6.5e-18  Score=139.58  Aligned_cols=185  Identities=16%  Similarity=0.259  Sum_probs=116.2

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+...+..+.+.+|++|+|.|.+. .+...+.|++.........+.........   ...+|+.+..+ ......|.|.+
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~   82 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTS   82 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECS
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECc
Confidence            455667778899999999999985 35678999997643221212221111111   12467777653 24567899999


Q ss_pred             cCCCCCeeEEEEEEEcc--CcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeC
Q psy16652        151 IQETDAGIYKCEVIISL--NNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRD  220 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~  220 (384)
                      ++.+|+|.|+|.+.+..  .........|.|..      +|.+....+....+.+|+.+.|.|.+.+. |.+ .+.|+++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            99999999999997541  11222334566653      22222111221223468999999999874 654 9999998


Q ss_pred             CCcccccCc---------------eeEeccEEEEcCCCCC-CCeEEEEEEEeCCCC
Q psy16652        221 NSAALSTGG---------------SIYRGNILKIPNITKT-DRGTYYCVAQNGVGR  260 (384)
Q Consensus       221 ~~~~~~~~~---------------~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~  260 (384)
                      +..+.....               .......|.|...... +.|.|+|.+.|....
T Consensus       163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            876543211               1112235777766553 678999999996543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.76  E-value=6.3e-19  Score=142.24  Aligned_cols=180  Identities=14%  Similarity=0.183  Sum_probs=108.9

Q ss_pred             ccCCCCeeeeCccee--eeccCcEEEEEEeecC---C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652         69 SQRTPTISYISQEQI--KDIAQTADLKCSVQYA---D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS  142 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
                      ...+|.+.+.+....  +.+|++++|.|.+.+.   + .+.+.|+|++........    .......+++|..       
T Consensus         6 ~~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~----~~~~~~~~~~~~~-------   74 (218)
T 2rgs_A            6 LEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT----QTHREDYNSTIRV-------   74 (218)
T ss_dssp             ---CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEE----EEEEETTTTEEEE-------
T ss_pred             CCCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccc----ccccccCCCeEEE-------
Confidence            345667766666655  7899999999999875   3 378999998753211000    0000011223322       


Q ss_pred             eEEEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652        143 TYILSIKEIQETDAGIYKCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW  217 (384)
Q Consensus       143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W  217 (384)
                      ...|.|.+++.+|+|.|+|.+.+..+.. ....+.+  .+..+|.+........ ..+|+.+.|.|.+.| +|.+ .+.|
T Consensus        75 ~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W  153 (218)
T 2rgs_A           75 VSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEW  153 (218)
T ss_dssp             EEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEE
Confidence            2479999999999999999998764432 1222211  2334444332211111 125899999999988 6665 9999


Q ss_pred             EeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ++++..+.....         .......|.|.....+|+|.|+|.|.|....
T Consensus       154 ~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          154 TSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            999876532111         1111224555555555789999999996544

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.76  E-value=1.7e-17  Score=133.64  Aligned_cols=170  Identities=21%  Similarity=0.336  Sum_probs=109.0

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc----------------ccCceeEe------ccEEEEcCCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL----------------STGGSIYR------GNILKIPNITKT  245 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~  245 (384)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++..  ....                ...+....      ...|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (215)
T ss_dssp             CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred             CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence            35688999999999998754  4689999863  2110                01111111      238999999999


Q ss_pred             CCeEEEEEEEeCCCC--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCC
Q psy16652        246 DRGTYYCVAQNGVGR--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNN  317 (384)
Q Consensus       246 d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~  317 (384)
                      |+|.|.|.+.+..+.  .......|.|..    +|.+...++...+..|+.++|.|.+.|. |.+ .+.|+++|..+...
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~  168 (215)
T 1c5d_H           89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH  168 (215)
T ss_dssp             GCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred             cCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence            999999999986421  112335666663    4555554444456789999999999986 877 99999998654211


Q ss_pred             CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        318 QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      .. .... ..+.....+.|+  ....+| |.|+|.|.|..|.......+
T Consensus       169 ~~-~~~~-~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~~  212 (215)
T 1c5d_H          169 TF-PAVL-QSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKKL  212 (215)
T ss_dssp             BC-CCEE-ETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ec-Cccc-CCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEec
Confidence            11 0000 011111112333  444456 99999999999987655443

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.76  E-value=1.9e-17  Score=137.05  Aligned_cols=178  Identities=19%  Similarity=0.310  Sum_probs=112.3

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.  ....+.|++.........+..... ...    ....+|+.+..+...+..+|.|.++
T Consensus        30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (256)
T 3sob_H           30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL  109 (256)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence            356679999999999999753  356899999765432222221111 111    1134688887765667889999999


Q ss_pred             CCCCCeeEEEEEEEcc----------CcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cC-CCeE
Q psy16652        152 QETDAGIYKCEVIISL----------NNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTI  215 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~----------~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v  215 (384)
                      +.+|+|.|+|.+.+..          .........|.|..    +|.+... .+...+.+|+.+.|.|.+.+ +| ...+
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~~~~p~~~~v  188 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTV  188 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEE-CCC-----TTEEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEE-CCCcccccCCcEEEEEEEEEEECCCeEE
Confidence            9999999999997432          01233445676653    2222211 12223568999999999976 45 3479


Q ss_pred             EEEeCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        216 SWRRDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       216 ~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      .|  ++..+..          .++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus       189 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~  240 (256)
T 3sob_H          189 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  240 (256)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             EE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC
Confidence            99  4433321          11222233578999998889 9999999997654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.75  E-value=7.5e-18  Score=117.29  Aligned_cols=95  Identities=18%  Similarity=0.282  Sum_probs=78.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      ||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.......+.....   ....+|.|.+++.+|+|.|+|.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT---DDLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC---SSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecc---cceEEEEEcCCCccCCEEEEEE
Confidence            5677666677788999999999999999999999999999997665433322111   1346799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEee
Q psy16652        353 AANKYGSAQKEIELFDRE  370 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~  370 (384)
                      |.|..|..+.++.|.|++
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           82 LGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999999875

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.75  E-value=2.7e-17  Score=133.89  Aligned_cols=178  Identities=20%  Similarity=0.337  Sum_probs=115.8

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCc-----eeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGS-----LIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.  ....+.|++.........+.......     .....+|+.+..+.....+.|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            445678999999999999752  35689999976443222222111111     11235788888776678889999999


Q ss_pred             CCCCCeeEEEEEEEccC-------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cC-CCeEEEE
Q psy16652        152 QETDAGIYKCEVIISLN-------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTISWR  218 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v~W~  218 (384)
                      +.+|+|.|.|.+.+...       ........|.|..    +|.+... .....+.+|+.+.|.|.+.+ .| .+.+.| 
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W-  164 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW-  164 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEE-CCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEec-CCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence            99999999999975321       1223445677652    2222211 11222458999999999977 44 347999 


Q ss_pred             eCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        219 RDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       219 ~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                       ++..+..          .++.....+.|.|.....+| |.|+|.|.|..+.
T Consensus       165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  214 (230)
T 3n9g_H          165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (230)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT
T ss_pred             -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC
Confidence             4443321          11222233579999999999 9999999997654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.75  E-value=1.5e-17  Score=136.63  Aligned_cols=181  Identities=17%  Similarity=0.254  Sum_probs=115.0

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+....+.+|++|+|.|.+.+.  +...+.|++.........+.... .+..    ....+|+.+..+......+|.|.+
T Consensus         5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   84 (248)
T 3u2s_H            5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS   84 (248)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            4566778999999999999752  35689999976543222221111 1111    113478888776556788999999


Q ss_pred             cCCCCCeeEEEEEEEcc---------------------CcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEE
Q psy16652        151 IQETDAGIYKCEVIISL---------------------NNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYC  205 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C  205 (384)
                      ++.+|+|.|.|.+.+..                     .........|.|..    +|.+... .+...+..|+.+.|.|
T Consensus        85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~-~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPL-APSSKSTSGGTAALGC  163 (248)
T ss_dssp             CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEE-CCC------CEEEEEE
T ss_pred             CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEe-CCCccccCCCcEEEEE
Confidence            99999999999997531                     11233345666652    2222211 1222345699999999


Q ss_pred             Eecc-cC-CCeEEEEeCCCccc--------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        206 YANG-FP-APTISWRRDNSAAL--------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       206 ~~~~-~~-~~~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      .+.+ +| ...+.|++++....        ..++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  227 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  227 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT
T ss_pred             EEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC
Confidence            9977 45 34799999875321        112223334578888888888 9999999997654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.75  E-value=7.3e-18  Score=139.02  Aligned_cols=173  Identities=18%  Similarity=0.303  Sum_probs=99.0

Q ss_pred             eEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-----------------STGGSIYR------GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-----------------~~~~~~~~------~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+.+  .+.+.|++....  +.                 ...+....      ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45688999999999998765  568999986421  10                 01111111      23799999999


Q ss_pred             CCCeEEEEEEEeCCC----------C--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEE
Q psy16652        245 TDRGTYYCVAQNGVG----------R--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIV  306 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~  306 (384)
                      +|+|.|.|.+.+..+          .  .......|.|..    +|.+....+...+..|+.++|.|.+.+. |.+ .|.
T Consensus        89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~  168 (257)
T 3bn9_D           89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  168 (257)
T ss_dssp             GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEE
T ss_pred             hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEE
Confidence            999999999998654          1  111234667764    4665544433345678999999999985 777 999


Q ss_pred             EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      |++++..+... .........+.....+.|.|.....+| |.|+|.|.|..........+
T Consensus       169 W~k~g~~~~~~-~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i  226 (257)
T 3bn9_D          169 WNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  226 (257)
T ss_dssp             ETTTTCCSSCE-ECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred             EeeCCCcCCcE-ecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence            99998764211 000000111111223567788777778 99999999987655444433

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.74  E-value=2.8e-17  Score=152.76  Aligned_cols=171  Identities=19%  Similarity=0.300  Sum_probs=121.2

Q ss_pred             CceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc-------------ccCceeEeccEEEEcCCCCCCCeEEEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL-------------STGGSIYRGNILKIPNITKTDRGTYYCVAQ  255 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~-------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  255 (384)
                      .....+.+|++++|.|.+ .+.|.+.+.|++++..+.             ........+.+|.|.+++.+|+|.|+|.+.
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence            445678999999999998 778888999999876321             111122334589999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecCeE-EecCCCcccccCCc-EEEEEEEec-cCCCeEEEEECCEEecCCC-ceeeeee-----e
Q psy16652        256 NGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYD-AILECHVEA-YPPPAIVWIKDGVQIMNNQ-HYSVSHF-----A  326 (384)
Q Consensus       256 ~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~v~W~~~~~~~~~~~-~~~~~~~-----~  326 (384)
                      +..+......+.|.|..+|.. .+......+..++. +.|.|.+.+ +|.|.+.|+++|..+.... +..+...     .
T Consensus       453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  532 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE  532 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred             cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence            988776567788888774432 22223333455544 466999988 6999999999999987543 3222211     1


Q ss_pred             ccCccccceEEEeecCCC-CCeEEEEEEEeCCcce
Q psy16652        327 TSDEFSDTSLRVITIERR-QFGQYACKAANKYGSA  360 (384)
Q Consensus       327 ~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~  360 (384)
                      .+.+...++|.|..++.+ +.|.|+|.|+|..+..
T Consensus       533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             CceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence            122233467999998845 4889999999997543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.74  E-value=3.7e-18  Score=136.62  Aligned_cols=165  Identities=16%  Similarity=0.199  Sum_probs=102.1

Q ss_pred             eeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         84 KDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +.+|++++|.|.+.+.+    ...+.|++++.......   . .......+++|..       ...|.|.+++.+|+|.|
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~---~-~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y   83 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQ---T-KPREEQFNSTFRS-------VSELPIMHQDWLNGKEF   83 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCE---E-ECCCEETTTEEEE-------EEEEECCHHHHHTTCCE
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccc---c-CCCcCcCCCcEEE-------EEEEEEehhHcCCCCEE
Confidence            78999999999998763    34899999874321100   0 0000111223322       24799999999999999


Q ss_pred             EEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCCCcccccCc-----
Q psy16652        160 KCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDNSAALSTGG-----  229 (384)
Q Consensus       160 ~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~-----  229 (384)
                      +|.+.+..+.. ....+.+  .+..+|.+........ ...|+.+.|.|.+.| +|. +.+.|++++..+.....     
T Consensus        84 ~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  162 (207)
T 2vol_A           84 KCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM  162 (207)
T ss_dssp             EEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE
T ss_pred             EEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE
Confidence            99998655432 2223332  2334454432211111 225899999999988 455 38999999876542211     


Q ss_pred             ----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        230 ----SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       230 ----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                          .......|.|.....+|.|.|+|.|.|....
T Consensus       163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence                1111224666666667899999999997543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.74  E-value=1.2e-16  Score=125.57  Aligned_cols=153  Identities=18%  Similarity=0.238  Sum_probs=109.1

Q ss_pred             eeeeccCcEEEEEEeecCCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         82 QIKDIAQTADLKCSVQYADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +.|..|++++|.|.+ +.+.+  .|.|.+.+...                 ++...    ......|.|.+++.+|+|.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-----------------~~~~~----~~~~~~L~I~~v~~~d~G~Y   74 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-----------------GAVQS----DTGRSVLTVRNASLSAAGTR   74 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-----------------CCEEE----ESSEEEEEECSCCGGGCEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-----------------CcEEe----cCCccEEEECccCcccCceE
Confidence            479999999999999 76656  99999954321                 11111    13345799999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCC----CeEEEEeCCCcccccCc---e-
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA----PTISWRRDNSAALSTGG---S-  230 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~----~~v~W~~~~~~~~~~~~---~-  230 (384)
                      .|.+.+.. +.....+.|.|+.+|......+.  ...+|+.. |.|.+.+ .|.    +++.|++++..+.....   . 
T Consensus        75 ~C~a~n~~-~~~~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~  150 (210)
T 1gsm_A           75 VCVGSCGG-RTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEV  150 (210)
T ss_dssp             EEEEEETT-EEEEEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEE
T ss_pred             EEEEEeCC-CceEEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccce
Confidence            99998644 55778899999998865543222  45678888 9999977 463    48999999987743311   0 


Q ss_pred             --------------eEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        231 --------------IYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       231 --------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                                    ..-.++|.+.....++.+.|+|.|.+..-.
T Consensus       151 ~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~  194 (210)
T 1gsm_A          151 QEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPG  194 (210)
T ss_dssp             EECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred             ecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCC
Confidence                          111234555567777778999999986543

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.74  E-value=5.2e-17  Score=136.27  Aligned_cols=172  Identities=17%  Similarity=0.246  Sum_probs=113.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCc--cc-----------------ccCceeEe-----ccEEEEcCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--AL-----------------STGGSIYR-----GNILKIPNITKT  245 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~-----------------~~~~~~~~-----~~~l~i~~~~~~  245 (384)
                      +..+.+.+|+++.|.|.+.+.+.+.+.|++.+..  ..                 ...+....     ...|.|.+++.+
T Consensus        31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE  110 (279)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGG
T ss_pred             CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCcc
Confidence            4557789999999999998777789999986421  10                 01111111     237999999999


Q ss_pred             CCeEEEEEEEeCCC----C-ceeeEEEEEEEe------cCeEEecC-CCcccccCCcEEEEEEEecc-CC-CeEEEEECC
Q psy16652        246 DRGTYYCVAQNGVG----R-GMKRNIAVEVEF------APVITINR-PRQGQALQYDAILECHVEAY-PP-PAIVWIKDG  311 (384)
Q Consensus       246 d~G~Y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~  311 (384)
                      |+|.|+|.+.+..+    . .......|.|..      +|.+.+.. ....+..|+.++|.|.+.|. |+ +.+.|+++|
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g  190 (279)
T 2wbj_D          111 DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  190 (279)
T ss_dssp             GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETT
T ss_pred             CCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            99999999998421    0 112234566653      56665433 33345578999999999986 43 599999999


Q ss_pred             EEecCCCceeeee------eeccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652        312 VQIMNNQHYSVSH------FATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ  361 (384)
Q Consensus       312 ~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  361 (384)
                      ..+..........      ...+.....+.|.|.....+| .|.|+|.|.|......
T Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          191 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            9886543211000      011111123457777777654 6789999999877655

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.74  E-value=1.3e-16  Score=127.31  Aligned_cols=178  Identities=17%  Similarity=0.230  Sum_probs=113.4

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-CCCceEEEEEeecCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~  153 (384)
                      +...+..+.+.+|++|+|.|.+.+.. ..+.|+|.........+...  .......+|+.+..+ ...+...|.|.+++.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~   80 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYL--ASGTKENGRLKSAFDSKERRYSTLHIRDAQL   80 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEE--SSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEE--ccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence            45556777899999999999987654 37999997643211222111  122335678888775 446778999999999


Q ss_pred             CCCeeEEEEEEEccC--------c--ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCC
Q psy16652        154 TDAGIYKCEVIISLN--------N--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDN  221 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~--------~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~  221 (384)
                      +|+|.|.|.+.+..+        .  .......|.|.......  .++.+.+..+ .+.|.|.+.+. |. +.+.|+++ 
T Consensus        81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~--~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-  156 (207)
T 1ypz_E           81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPP--AKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-  156 (207)
T ss_dssp             GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCC--CCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-
T ss_pred             HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCC--CCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-
Confidence            999999999985431        1  12234677776432111  1223333232 37999999774 54 69999998 


Q ss_pred             CcccccCcee--EeccEEEEcCCCC-CCCeEEEEEEEeCCC
Q psy16652        222 SAALSTGGSI--YRGNILKIPNITK-TDRGTYYCVAQNGVG  259 (384)
Q Consensus       222 ~~~~~~~~~~--~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~  259 (384)
                      ..+.......  ..++.+.+..... +|.|.|+|.+.|..+
T Consensus       157 ~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          157 KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            6554322211  1233444444433 678999999998654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.74  E-value=2.2e-17  Score=118.42  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=90.8

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+...     .....|.|.+++.+|+|.|+|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C   80 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS-----ENGSKLTILAARQEHCGCYTL   80 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEEC-----SSEEEEEETTCCTTTCEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEECCCChhcCEEEEE
Confidence            356776667777889999999999999999999999999999887776655421     135689999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeeecCCccCCcccc
Q psy16652        352 KAANKYGSAQKEIELFDRETQTGDETFPIFYA  383 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~  383 (384)
                      .|.|..|.....+.|.|.++|.+|..+|.+..
T Consensus        81 ~a~N~~g~~~~~~~l~V~~~p~~P~~p~~~~~  112 (114)
T 2cqv_A           81 LVENKLGSRQAQVNLTVVDKPDPPAGTPSGPS  112 (114)
T ss_dssp             EEECSSCEEECCEEEEEECSCSCCCCCTTSSC
T ss_pred             EEEECCCcEEEEEEEEEECCCCCCCCCccccc
Confidence            99999999999999999999888887776543

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.73  E-value=2.1e-15  Score=119.40  Aligned_cols=244  Identities=18%  Similarity=0.175  Sum_probs=156.8

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecC-C---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYA-D---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +.+...|+...+..|+.++|.|.+.+. |   +..+.|+|++...                          ......|.|
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~I--------------------------sGaT~tLti   56 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH--------------------------ENNTATLTV   56 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEEC--------------------------SCCSSEEEE
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccc--------------------------cCCcceEEe
Confidence            356667777788999999999998764 4   4689999976431                          112236899


Q ss_pred             eecCCCCCeeEEEEEEEccCcce-eeeEEEEEecCCccccCCCceEEeecCceEEEEEEe--cc-cC-----CCeEEEEe
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKV-SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA--NG-FP-----APTISWRR  219 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~-~~-----~~~v~W~~  219 (384)
                      ..+...|+|.|+|.+.+..+... +..+.+.....+.+....+....+..|..+.|.+.+  .| .+     ..++.|++
T Consensus        57 ~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyK  136 (304)
T 3shs_A           57 ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK  136 (304)
T ss_dssp             SSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEE
T ss_pred             eeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEee
Confidence            99999999999999986554332 233333332222333333455556678899998887  44 33     45899999


Q ss_pred             CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC-CceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEe
Q psy16652        220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG-RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE  298 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  298 (384)
                      ++..+.       ....|++......++|.|.|.+.+..+ ...+..+.+.+...+.-...-....+..|+.+.|.-.+.
T Consensus       137 ngt~Is-------gAq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  209 (304)
T 3shs_A          137 GEDVID-------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS  209 (304)
T ss_dssp             TTEEEE-------SSSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEE
T ss_pred             CCeEcc-------CccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEe
Confidence            986442       233577888888999999999998755 444666666554433322222334567888888875542


Q ss_pred             --------ccCCC--eEEEEE--CCEEe----cCC-----CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        299 --------AYPPP--AIVWIK--DGVQI----MNN-----QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       299 --------~~p~~--~v~W~~--~~~~~----~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                              |.|..  .+.||.  +|+.-    ...     +.+.+.        .++.|.-.....+|...|.|.|.-..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 3shs_A          210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT--------PDGHLFKESATYDDTAKFWCVAKLYQ  281 (304)
T ss_dssp             EECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEEC--------TTSCEEESSCCGGGCEEEEEEEEEEE
T ss_pred             eccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeC--------CCcceeecccccccchheeeHHHHHH
Confidence                    23333  477875  33211    110     111111        24557667788899999999987543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.73  E-value=1.3e-16  Score=130.58  Aligned_cols=171  Identities=16%  Similarity=0.262  Sum_probs=109.6

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCc--cc---------------ccCceeE-----eccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--AL---------------STGGSIY-----RGNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~---------------~~~~~~~-----~~~~l~i~~~~~~d~  247 (384)
                      +..+.+.+|+++.|.|.+.. +.+.+.|++.+..  ..               ...+...     ....|.|.+++.+|+
T Consensus         6 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   84 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred             CCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence            45677899999999999854 5679999986421  10               0111111     124799999999999


Q ss_pred             eEEEEEEEeCCC----CceeeEEEEEEEe------cCeEEec-CCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEe
Q psy16652        248 GTYYCVAQNGVG----RGMKRNIAVEVEF------APVITIN-RPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQI  314 (384)
Q Consensus       248 G~Y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~  314 (384)
                      |.|.|.+.+..+    ........|.|..      +|.+.+. +....+..|+.++|.|.+.|. |.+ .+.|+++|..+
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~  164 (238)
T 1bec_A           85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  164 (238)
T ss_dssp             EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEE
T ss_pred             EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEEC
Confidence            999999998642    1112234566654      5666553 334456689999999999985 655 99999999988


Q ss_pred             cCCCcee--eeeeeccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652        315 MNNQHYS--VSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ  361 (384)
Q Consensus       315 ~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  361 (384)
                      .......  ......+.....+.|.|......| .|.|+|.|.|......
T Consensus       165 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  214 (238)
T 1bec_A          165 HSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  214 (238)
T ss_dssp             CTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTT
T ss_pred             CCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCC
Confidence            6543221  011111111112334454444444 6789999999865433

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.72  E-value=9.3e-17  Score=129.32  Aligned_cols=175  Identities=17%  Similarity=0.228  Sum_probs=122.9

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC--ceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG--GSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMK  263 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~  263 (384)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ....    ....|.|.++..+|+|.|+|.+.|..|.. +
T Consensus        25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  103 (215)
T 3mtr_A           25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE-S  103 (215)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE-E
T ss_pred             CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce-E
Confidence            445778899999999999999999999999998776543  1221    14689999999999999999999998876 6


Q ss_pred             eEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec----cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEE
Q psy16652        264 RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA----YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLR  337 (384)
Q Consensus       264 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  337 (384)
                      ..+.|.+..+|......  .....+..+.|.|....    .|..  .+.|..++......     .............|.
T Consensus       104 ~~~~l~v~~~P~~p~~~--~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-----~~~~~~~~~~~~~l~  176 (215)
T 3mtr_A          104 LEFILVQADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-----KWYDAKEASMEGIVT  176 (215)
T ss_dssp             EEEEEEECCCCCCCEEE--EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-----EEEEHHHHHHHTEEE
T ss_pred             EEEEEEECCCCCCCcce--EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-----cccccccccccccEE
Confidence            67788887665422111  11234567888887422    2322  47888877432111     110000111237899


Q ss_pred             EeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        338 VITIERRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       338 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.++...+.|.|+|.|.|..|....+..+.+..+|
T Consensus       177 i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          177 IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             EECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             ECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            99999999999999999999988777666665544

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.72  E-value=4.4e-17  Score=133.33  Aligned_cols=176  Identities=19%  Similarity=0.252  Sum_probs=111.9

Q ss_pred             eEEeecCceEEEEEEecccC----CCeEEEEeCCCccc-------c-----------------cCceeE------eccEE
Q psy16652        192 SVIVSEGQTVYLYCYANGFP----APTISWRRDNSAAL-------S-----------------TGGSIY------RGNIL  237 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~-------~-----------------~~~~~~------~~~~l  237 (384)
                      .+.+.+|++++|.|.+.+.+    ...+.|++......       .                 ..+...      ....|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   88 (239)
T 3tv3_H            9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL   88 (239)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred             CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence            35688999999999997654    34899998432110       0                 011111      11259


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCCC------------ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-c
Q psy16652        238 KIPNITKTDRGTYYCVAQNGVGR------------GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-Y  300 (384)
Q Consensus       238 ~i~~~~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~  300 (384)
                      .|.+++.+|+|.|.|.+.+..+.            .......|.|.    .+|.+...++...+..|+.++|.|.+.+ +
T Consensus        89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~  168 (239)
T 3tv3_H           89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  168 (239)
T ss_dssp             EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEB
T ss_pred             EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEe
Confidence            99999999999999999865210            01122345553    3566665555555667999999999988 5


Q ss_pred             CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        301 PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       301 p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      |.+ .+.|++++..+...... ......+.....+.|+|.....+| |.|+|.|.|..+.......|.+.
T Consensus       169 p~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  236 (239)
T 3tv3_H          169 PEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  236 (239)
T ss_dssp             SSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCCeEEEEEECCccCceEecC-ceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence            544 58999988643211110 011111222234568899888888 99999999999887777666553

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.72  E-value=2.7e-16  Score=126.61  Aligned_cols=174  Identities=16%  Similarity=0.182  Sum_probs=120.3

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+ ..+....+.+|+.+.|.|.+.+.|.+.+.|++++.....            ....++.+..  ......|.|
T Consensus        16 ~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~------------~~~~~~~~~~--~~~~~~L~i   80 (215)
T 3mtr_A           16 HMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS------------SNYSNIKIYN--TPSASYLEV   80 (215)
T ss_dssp             CCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSC------------SSSCSEEEEE--ETTEEEEEE
T ss_pred             eecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCC------------CCCccEEEec--CCCeeEEEE
Confidence            4456777 456667899999999999999988889999997754211            0113444443  234678999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec----ccCCC--eEEEEeCCC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN----GFPAP--TISWRRDNS  222 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~~~~--~v~W~~~~~  222 (384)
                      .+++.+|+|.|+|.+.|..+ ..+..+.|.|..+|..+..   ......+..+.|.|...    +.|..  .+.|.+++.
T Consensus        81 ~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~P~~p~~---~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~  156 (215)
T 3mtr_A           81 TPDSENDFGNYNCTAVNRIG-QESLEFILVQADTPSSPSI---DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE  156 (215)
T ss_dssp             CCCSGGGCEEEEEEEECSSC-EEEEEEEEEECCCCCCCEE---EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC
T ss_pred             ecCChhhCeEEEEEEEECCC-ceEEEEEEEECCCCCCCcc---eEEEEecceEEEEEecCCccCCCceEEEEEEEEECCC
Confidence            99999999999999986554 4567788888776654321   11234567889999742    22332  478888765


Q ss_pred             cccccCcee----EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        223 AALSTGGSI----YRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       223 ~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      .........    .....|.|.++...+.|.|+|.|.|..|..
T Consensus       157 ~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s  199 (215)
T 3mtr_A          157 EVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG  199 (215)
T ss_dssp             CCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBC
T ss_pred             CcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCccc
Confidence            422111110    012689999999999999999999988875

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.72  E-value=7.8e-17  Score=140.91  Aligned_cols=165  Identities=14%  Similarity=0.185  Sum_probs=115.3

Q ss_pred             eecCceEEEEEEeccc---CC-CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        195 VSEGQTVYLYCYANGF---PA-PTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~---~~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      +..|++++|.|.+.+.   |. ..|.|++++..+...         .........|.|..++.+|+|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6789999999999886   32 269999988554211         1112234479999999999999999999876532


Q ss_pred             -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652        262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (384)
                       ..+.+.+  .+..+|.+.+.+.......|+.++|.|.+.|. | .+.|.|++||.++.............+.....+.|
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L  339 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKL  339 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEE
Confidence             2233332  55678888877766666668999999999985 3 34899999999875432222121222222334557


Q ss_pred             EEeecCCCCCeEEEEEEEeCCcc
Q psy16652        337 RVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      .|.....+|.|.|+|.|.|..-.
T Consensus       340 ~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          340 NVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             EEcHHHhCCCCcEEEEEEeCCCC
Confidence            77777778899999999998654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.72  E-value=1.8e-16  Score=128.49  Aligned_cols=178  Identities=21%  Similarity=0.325  Sum_probs=113.3

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....+.+|++|+|.|.+.+.  +...+.|++.........+..... ...    ....+|+.+..+......+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            445778999999999998753  356899999764432222221111 111    1134688887665567889999999


Q ss_pred             CCCCCeeEEEEEEEccC--------cceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecc-cC-CCeEEE
Q psy16652        152 QETDAGIYKCEVIISLN--------NKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTISW  217 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v~W  217 (384)
                      +.+|+|.|.|.+.+...        ........|.|...    |.+... .+...+.+|+.+.|.|.+.+ .| .+.+.|
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEE-EEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEe-cCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence            99999999999975421        11223445666432    222111 11222457999999999977 44 358999


Q ss_pred             EeCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        218 RRDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       218 ~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                        ++..+..          .++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus       166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  215 (226)
T 3mlr_H          166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  215 (226)
T ss_dssp             --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence              3332211          11222233479999998888 9999999997654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=1.6e-16  Score=129.17  Aligned_cols=169  Identities=19%  Similarity=0.226  Sum_probs=107.9

Q ss_pred             CceEEeecCceEEEEEEeccc--CCCeEEEEeCCC--ccc----------------ccCceeEe------ccEEEEcCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNS--AAL----------------STGGSIYR------GNILKIPNIT  243 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~--~~~----------------~~~~~~~~------~~~l~i~~~~  243 (384)
                      +..+.+.+|++++|.|.+.+.  +...+.|++...  ...                ...+....      ...|.|.+++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (230)
T 1ypz_F            8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (230)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC
Confidence            566778999999999999764  456899998542  110                01111111      1379999999


Q ss_pred             CCCCeEEEEEEEeC--CC-CceeeEEEEEEE---------ecCeEEec-CCCcccccCCcEEEEEEEecc-CC-CeEEEE
Q psy16652        244 KTDRGTYYCVAQNG--VG-RGMKRNIAVEVE---------FAPVITIN-RPRQGQALQYDAILECHVEAY-PP-PAIVWI  308 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~--~~-~~~~~~~~l~v~---------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~  308 (384)
                      .+|+|.|.|.+.+.  .. ........|.|.         .+|...+. +....+..|+.++|.|.+.+. |. +.+.|+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~  167 (230)
T 1ypz_F           88 EEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWK  167 (230)
T ss_dssp             GGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEE
T ss_pred             hhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEE
Confidence            99999999999874  11 111233466665         12332222 233345568899999999885 75 599999


Q ss_pred             E-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        309 K-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       309 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      + +|..+......... ...+.....+.|+|..... + |.|+|.|.|..+...
T Consensus       168 ~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~  218 (230)
T 1ypz_F          168 EKDGNTILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGG  218 (230)
T ss_dssp             CTTSSCBCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTT
T ss_pred             ccCCeEccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCc
Confidence            9 87766432211111 1111122245688877775 4 999999999887543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.71  E-value=2.6e-18  Score=138.22  Aligned_cols=169  Identities=16%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             CceEEeecCceEEEEEEecccCC---CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPA---PTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      +....+.+|++++|.|.+.+.++   +.+.| ++ ......         .+.......|.|.+++.+|+|.|+|.+.|.
T Consensus        11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~   88 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP   88 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred             cChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence            34445688999999999988654   68999 43 332210         111113346888888889999999999987


Q ss_pred             CCCce-eeEEE-EEEEecCeEEecCC-CcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceee--eee---ec
Q psy16652        258 VGRGM-KRNIA-VEVEFAPVITINRP-RQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSV--SHF---AT  327 (384)
Q Consensus       258 ~~~~~-~~~~~-l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~--~~~---~~  327 (384)
                      .+... ...+. +.+..+|.+.+.++ ...+..|+.+.|.|.+.|. |+ +.|.|++||..+........  ...   ..
T Consensus        89 ~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~d  168 (214)
T 1ow0_A           89 ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT  168 (214)
T ss_dssp             SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSS
T ss_pred             CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCC
Confidence            65431 22222 12356787765443 3446788999999999985 54 49999999998865421111  111   11


Q ss_pred             cCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       328 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +.....+.|.+.....+|.|.|+|.|.|.....
T Consensus       169 gt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~  201 (214)
T 1ow0_A          169 TTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  201 (214)
T ss_dssp             CCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred             CcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence            111222345555555556899999999987543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.70  E-value=2.4e-16  Score=130.27  Aligned_cols=170  Identities=18%  Similarity=0.265  Sum_probs=110.6

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc-------c----------C-ceeEecc---EEEEcCCCCCCCe
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-------T----------G-GSIYRGN---ILKIPNITKTDRG  248 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-------~----------~-~~~~~~~---~l~i~~~~~~d~G  248 (384)
                      +..+.+.+|+++.|.|.+.+.+.+.+.|++.......       .          . +......   .|.|.+++.+|+|
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG   87 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence            4557789999999999988877889999983211100       0          0 1111111   1999999999999


Q ss_pred             EEEEEEEeCCC---C--ceeeEEEEEEE------ecCeEEecC-CCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEe
Q psy16652        249 TYYCVAQNGVG---R--GMKRNIAVEVE------FAPVITINR-PRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQI  314 (384)
Q Consensus       249 ~Y~C~~~~~~~---~--~~~~~~~l~v~------~~p~~~~~~-~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~  314 (384)
                      .|+|.+.+..+   .  .......|.|.      .+|.+.+.+ ....+..|+.++|.|.+.| +|++ .+.|+++|..+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l  167 (253)
T 3to4_D           88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (253)
T ss_dssp             EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEEC
Confidence            99999986543   1  11223355554      456655433 2233445789999999998 6766 89999999998


Q ss_pred             cCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcc
Q psy16652        315 MNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGS  359 (384)
Q Consensus       315 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  359 (384)
                      ...........      ..+.....+.|.|.....+| .|.|+|.|.|..-.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          168 HSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             CTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            65432211110      11112223567888887777 77999999998644

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.70  E-value=4.6e-16  Score=128.40  Aligned_cols=171  Identities=17%  Similarity=0.261  Sum_probs=111.6

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCc--cc---------------ccCceeEe-----ccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--AL---------------STGGSIYR-----GNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~---------------~~~~~~~~-----~~~l~i~~~~~~d~  247 (384)
                      +..+.+.+|+++.|.|.+.. +.+.+.|++....  ..               ...+....     ...|.|.+++.+|+
T Consensus        10 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   88 (252)
T 1oga_E           10 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   88 (252)
T ss_dssp             CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             CCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhC
Confidence            55678999999999999853 5679999986421  10               01111111     24799999999999


Q ss_pred             eEEEEEEEeCCC--CceeeEEEEEEE------ecCeEEecC-CCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecC
Q psy16652        248 GTYYCVAQNGVG--RGMKRNIAVEVE------FAPVITINR-PRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMN  316 (384)
Q Consensus       248 G~Y~C~~~~~~~--~~~~~~~~l~v~------~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~  316 (384)
                      |.|.|.+.+...  ........|.|.      .+|.+.+.. ....+..|+.++|.|.+.|. |.+ .+.|+++|..+..
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~  168 (252)
T 1oga_E           89 AFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  168 (252)
T ss_dssp             EEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECS
T ss_pred             EEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCC
Confidence            999999998521  111122345554      367666543 33345578999999999985 654 9999999998865


Q ss_pred             CCceeeee------eeccCccccceEEEeecCCC-CCeEEEEEEEeCCcceE
Q psy16652        317 NQHYSVSH------FATSDEFSDTSLRVITIERR-QFGQYACKAANKYGSAQ  361 (384)
Q Consensus       317 ~~~~~~~~------~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~  361 (384)
                      ........      ...+.....+.|.|...... |.|.|+|.|.|......
T Consensus       169 ~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          169 GVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             SEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            43211000      01111122345777776664 57899999999876654

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=131.25  Aligned_cols=182  Identities=19%  Similarity=0.308  Sum_probs=114.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCc-----eeeeCCceEEeeCCCCceEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGS-----LIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      .+.. +....+.+|++|+|.|.+.+  .....+.|++.........+.......     .....+|+.+..+......+|
T Consensus        26 ~v~q-~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL  104 (267)
T 3u1s_H           26 QLVQ-SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYM  104 (267)
T ss_dssp             CEEE-CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEE
T ss_pred             eEEe-eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEE
Confidence            3444 44577999999999999865  235689999976543222222221111     112347888887666678899


Q ss_pred             EEeecCCCCCeeEEEEEEE-------cc--------------Cc---ceeeeEEEEEec----CCccccCCCceEEeecC
Q psy16652        147 SIKEIQETDAGIYKCEVII-------SL--------------NN---KVSAEVELIVRR----PPIISDNSTRSVIVSEG  198 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~-------~~--------------~~---~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g  198 (384)
                      .|.+++.+|+|.|.|.+.+       ..              ..   .......|.|..    +|.+....+. ....+|
T Consensus       105 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g  183 (267)
T 3u1s_H          105 ELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPS-SKSTSG  183 (267)
T ss_dssp             EECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-GGGEET
T ss_pred             EECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCC-cccCCC
Confidence            9999999999999999861       11              00   122244566652    2222211111 113478


Q ss_pred             ceEEEEEEecc-cC-CCeEEEEeCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        199 QTVYLYCYANG-FP-APTISWRRDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       199 ~~~~l~C~~~~-~~-~~~v~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.+.|.|.+.+ +| .+.+.|  ++..+..          .++.....+.|.|.....+| +.|+|.+.|....
T Consensus       184 ~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  254 (267)
T 3u1s_H          184 GTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  254 (267)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred             CcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCC
Confidence            99999999976 55 458999  4433321          11222233578898888888 9999999997544

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.70  E-value=2e-17  Score=135.00  Aligned_cols=178  Identities=14%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             CCCCeeeeCccee--eeccCcEEEEEEeecC---CCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652         71 RTPTISYISQEQI--KDIAQTADLKCSVQYA---DDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY  144 (384)
Q Consensus        71 ~~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (384)
                      .+|.+...+....  +.+|++++|.|.+.+.   |.+ .+.|++++......   .. .......+++|..       ..
T Consensus        14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~---~~-~~~~~~~~~~~~~-------~s   82 (239)
T 1i1c_A           14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA---QT-HAPEKQSNSTLRS-------VS   82 (239)
T ss_dssp             ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC---EE-CCCEECTTSCEEE-------EE
T ss_pred             cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCc---cc-ccceEcCCCcEEE-------EE
Confidence            4555555455544  7899999999999875   544 89999987542110   00 0000111223322       34


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEe
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRR  219 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~  219 (384)
                      .|.|.+++.+|+|.|+|.+.+..+.. ....+.+  .+..+|.+........ ...|+.+.|.|.+.| +|. ..+.|++
T Consensus        83 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k  161 (239)
T 1i1c_A           83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKM  161 (239)
T ss_dssp             EEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEE
Confidence            79999999999999999998655432 2222222  2223443332211111 134789999999988 555 4899999


Q ss_pred             CCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        220 DNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       220 ~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ++..+.....         .......|.|.....+|.|.|+|.|.|....
T Consensus       162 ~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          162 NGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            9876542211         1111223555555556799999999996543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.70  E-value=9.4e-16  Score=146.13  Aligned_cols=247  Identities=16%  Similarity=0.162  Sum_probs=151.5

Q ss_pred             cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEc
Q psy16652         87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS  166 (384)
Q Consensus        87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  166 (384)
                      +..+.|.|.+.+.|.+.+.|.+++......            ...++.+.. .......|.+..+..+|.|.|.|.    
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~------------~~~~~~i~~-~~~~~~~l~~~~va~~~~G~~~~~----  153 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW------------NRAELAIST-FWPNFYQVIFEVITSGHQGYLAID----  153 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSC------------EEEEEEECC-CTTSCEEEEEEEEECSSCCEEEEC----
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCce------------eEEEEEEee-cCCCceEEEEEEEecCCceEEEEe----
Confidence            458999999999898999999988652100            001111110 002223344444444555555442    


Q ss_pred             cCcceeeeEEEEE---ecCCccccCCCceEEeecCceEEEEEEecccCCCeEE-EE--eCCCcccccCcee----EeccE
Q psy16652        167 LNNKVSAEVELIV---RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTIS-WR--RDNSAALSTGGSI----YRGNI  236 (384)
Q Consensus       167 ~~~~~~~~~~l~v---~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~-W~--~~~~~~~~~~~~~----~~~~~  236 (384)
                             .+.+.+   ..+|.+.  .+....+.+|+++.|.|.+.|.|.+.+. |+  +++..+.......    ...+.
T Consensus       154 -------~v~~~~~~~~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~  224 (731)
T 2v5y_A          154 -------EVKVLGHPCTRTPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS  224 (731)
T ss_dssp             -------CBEEESSCCSSSCEEC--CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEE
T ss_pred             -------eEEeeecccccccccc--cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEE
Confidence                   112221   1344443  2456789999999999999999999887 88  5665543321111    12358


Q ss_pred             EEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEecc---CCC---eEEEEEC
Q psy16652        237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY---PPP---AIVWIKD  310 (384)
Q Consensus       237 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~---~v~W~~~  310 (384)
                      |.|.++..+|+|.|+|.|.|..|...+....|.|..+|.....+. ........+.|.|.....   .+.   .+.|...
T Consensus       225 l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~-~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~  303 (731)
T 2v5y_A          225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ-LASVGATYLWIQLNANSINGDGPIVAREVEYCTA  303 (731)
T ss_dssp             EEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCE-EEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES
T ss_pred             EEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcc-eeccCCceEEEEeCCcccCCCCccEEEEEEEEEC
Confidence            999999999999999999999887446667788888776432222 222344678888876321   222   4566554


Q ss_pred             CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE--eCCcceEEEEEEEEeee
Q psy16652        311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA--NKYGSAQKEIELFDRET  371 (384)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~  371 (384)
                      +.      .+.....     .....+.|.++...+...|.|.|.  |..|....+..+.+...
T Consensus       304 ~~------~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~  355 (731)
T 2v5y_A          304 SG------SWNDRQP-----VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTK  355 (731)
T ss_dssp             SS------SCEEEEE-----CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECC
T ss_pred             CC------CceEEec-----cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeec
Confidence            21      1111110     134678899998888888899999  99997664433444433

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.69  E-value=1.7e-17  Score=132.81  Aligned_cols=176  Identities=13%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             CCeeeeCcceee--eccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652         73 PTISYISQEQIK--DIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        73 p~~~~~~~~~~v--~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  146 (384)
                      |.+...+....+  .+|++++|.|.+.+.+    ...+.|++++.......    ........++.+.+..       .|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~----~~~~~~~~~g~~~~~~-------~l   70 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK----TKPREEQYNSTYRVVS-------VL   70 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCE----ECCCEECTTSCEEEEE-------EE
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcc----cCCceeccCCcEEEEE-------EE
Confidence            344444444433  7999999999998754    35899999875421110    0000011122222221       34


Q ss_pred             EEeecCCCCCeeEEEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCC
Q psy16652        147 SIKEIQETDAGIYKCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDN  221 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~  221 (384)
                      .|.....+|+|.|+|.+.+..+.. ....+.+  .+..+|.+....+.... ..|..+.|.|.+.| +|. +.+.|++++
T Consensus        71 ~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g  149 (207)
T 1l6x_A           71 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNG  149 (207)
T ss_dssp             ECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeCeECCCeEEEEEECC
Confidence            444444556999999998654432 1222221  22333433322111111 24567999999988 454 389999998


Q ss_pred             CcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        222 SAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       222 ~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ..+.....         .......|.+.....+|+|.|+|.|.|....
T Consensus       150 ~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          150 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            76542111         1111224555555556799999999996543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.69  E-value=3.8e-17  Score=116.07  Aligned_cols=103  Identities=23%  Similarity=0.430  Sum_probs=72.0

Q ss_pred             EEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       266 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      +.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+.....       ....|.|.+++.+|
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D   75 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-------GNRNLTIRRVRKED   75 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET-------TTTEEEECSCCGGG
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC-------CCcEEEEeecCccc
Confidence            55667778888877788889999999999999999999999999998887665544432       45789999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        346 FGQYACKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      +|.|+|.|.|..|.....+.|.|.+++..+
T Consensus        76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           76 EGLYTCQACSVLGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             CEEEEEEEC----CEEEEEEEEEEC-----
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEeCCCccc
Confidence            999999999999999999999999887544

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.69  E-value=5.9e-17  Score=132.11  Aligned_cols=175  Identities=19%  Similarity=0.273  Sum_probs=106.9

Q ss_pred             EEeecCceEEEEEEecccC--CCeE--EEEeCCCccc---------cc------------CceeEe------ccEEEEcC
Q psy16652        193 VIVSEGQTVYLYCYANGFP--APTI--SWRRDNSAAL---------ST------------GGSIYR------GNILKIPN  241 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~--~~~v--~W~~~~~~~~---------~~------------~~~~~~------~~~l~i~~  241 (384)
                      ..+.+|++++|.|.+.+.+  ...+  .|++......         ..            .+....      ...|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN   89 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence            4578999999999986532  2344  9998432110         00            111111      12699999


Q ss_pred             CCCCCCeEEEEEEEeCCC-------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEE
Q psy16652        242 ITKTDRGTYYCVAQNGVG-------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWI  308 (384)
Q Consensus       242 ~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~  308 (384)
                      ++.+|+|.|.|.+.+..+       ........|.|.    .+|.+...++...+..|+.++|.|.+.+.+++  .+.|+
T Consensus        90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~  169 (232)
T 3qhz_H           90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  169 (232)
T ss_dssp             CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence            999999999999987521       112233455554    45666644454556679999999999885443  68899


Q ss_pred             ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +++..+...... ......+.....+.|+|.....+| |.|+|.|.|..+.......|.+.
T Consensus       170 ~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          170 SGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             GGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ECCEecceeecc-ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            988643211100 001111112223578899988889 99999999999888777776543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.68  E-value=1.9e-16  Score=130.05  Aligned_cols=178  Identities=18%  Similarity=0.288  Sum_probs=109.6

Q ss_pred             ceEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc---------c----------cCceeE------eccEEEEcCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL---------S----------TGGSIY------RGNILKIPNIT  243 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~---------~----------~~~~~~------~~~~l~i~~~~  243 (384)
                      ....+.+|++++|.|.+.+  .+...+.|++......         .          ..+...      ....|.|.+++
T Consensus         7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   86 (248)
T 3u2s_H            7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLR   86 (248)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            4467889999999999965  2345799997532110         0          011111      11259999999


Q ss_pred             CCCCeEEEEEEEeCCC---------------------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEe
Q psy16652        244 KTDRGTYYCVAQNGVG---------------------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVE  298 (384)
Q Consensus       244 ~~d~G~Y~C~~~~~~~---------------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~  298 (384)
                      .+|+|.|.|.+.+..+                     ........|.|.    .+|.+...++...+..|+.++|.|.+.
T Consensus        87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~  166 (248)
T 3u2s_H           87 VEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  166 (248)
T ss_dssp             GGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEE
T ss_pred             HHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEe
Confidence            9999999999986410                     111223455554    456666555555556799999999998


Q ss_pred             c-cC-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        299 A-YP-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       299 ~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      + +| ++.+.|+++|..+..... .......+.....+.|+|.....+| |.|+|.|.|..+.......|.+..
T Consensus       167 ~~~P~~~~v~W~~~g~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~~  238 (248)
T 3u2s_H          167 DYFPEPVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS  238 (248)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEEC-CCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC--
T ss_pred             eEECCCeEEEEeECCccCceeec-CceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccCC
Confidence            7 45 347999998864321110 0011111222234568888888888 999999999998877776666543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=8.1e-16  Score=107.22  Aligned_cols=95  Identities=21%  Similarity=0.170  Sum_probs=80.0

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.......    .....|.|.+++.+|+|.|+|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C   79 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE----DNVCELVIRDVTGEDSASIMV   79 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEE----TTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcC----CCEEEEEECCCCcCCCEEEEE
Confidence            3566766777788899999999999999999999999999999877665543211    134579999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEee
Q psy16652        352 KAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|.|..|....++.|.|.+
T Consensus        80 ~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           80 KAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCCcEEEEEEEEEec
Confidence            9999999999999999875

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.68  E-value=3.5e-16  Score=109.61  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             ccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        286 ALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      ..+..+.|.|.+.|.|.|.+.|+++|..+..+.+..............+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            45778999999999999999999999999877654332222222223566999999999999999999999999999999


Q ss_pred             EEEeeeec
Q psy16652        366 LFDRETQT  373 (384)
Q Consensus       366 l~v~~~~~  373 (384)
                      |.|.++|.
T Consensus        94 l~V~~~P~  101 (103)
T 1wwb_X           94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEECCCCC
Confidence            99988764

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.68  E-value=2.3e-16  Score=110.89  Aligned_cols=96  Identities=17%  Similarity=0.252  Sum_probs=81.9

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...     .....|.|.+++.+|+|.|+
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~   80 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT-----SGVLTLEILDCHTDDSGTYR   80 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE-----TTEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEEcCCCcccCEEEE
Confidence            3467777777778889999999999999999999999999999987776655421     13457999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeee
Q psy16652        351 CKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      |.|.|..|.....+.|.|.+.
T Consensus        81 C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           81 AVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEeCCCcEEEEEEEEEECC
Confidence            999999999999999998764

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.68  E-value=4.2e-16  Score=144.80  Aligned_cols=174  Identities=18%  Similarity=0.267  Sum_probs=115.9

Q ss_pred             cceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         80 QEQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      ....+.+|++++|.|.+ .+.+.+.+.|++++........ ....++ ....+|+.+..+     .+|.|.+++.+|+|.
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~-~~~~~~-~~~~~r~~~~~~-----~~L~i~~v~~~D~G~  446 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKV-LSPQGG-GPWDSVARVLPN-----GSLFLPAVGIQDEGI  446 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEE-CCSCCS-SGGGGTSEECTT-----SCEEESSCCGGGCEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEe-cccCCC-CCcCCcEEEcCC-----ceEEEeccccccCeE
Confidence            34568899999999998 6677889999998763211100 000000 011234443321     269999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCce-EEEEEEecc-cCCCeEEEEeCCCcccccCcee-----
Q psy16652        159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQT-VYLYCYANG-FPAPTISWRRDNSAALSTGGSI-----  231 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-----  231 (384)
                      |+|.+.+..+......+.|.|..+|..+........+.+|.. +.|.|.+.+ +|.+.+.|++++..+.......     
T Consensus       447 Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~  526 (581)
T 3o3u_N          447 FRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQ  526 (581)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEE
T ss_pred             EEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEee
Confidence            999998766555577888988875543322222223555554 567999977 6899999999987765432211     


Q ss_pred             ----------EeccEEEEcCCC-CCCCeEEEEEEEeCCCC
Q psy16652        232 ----------YRGNILKIPNIT-KTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       232 ----------~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~  260 (384)
                                .-.++|.|..++ .++.|.|+|.++|....
T Consensus       527 ~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          527 TRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             eEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                      113479999988 55588999999997543

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.67  E-value=6e-16  Score=125.87  Aligned_cols=176  Identities=18%  Similarity=0.296  Sum_probs=113.1

Q ss_pred             eEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc-------------------ccCceeE-e-----ccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL-------------------STGGSIY-R-----GNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~-------------------~~~~~~~-~-----~~~l~i~~~~~  244 (384)
                      .+.+.+|++++|.|.+.+  .....+.|++......                   ...+... .     ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            466889999999999865  2345799997432110                   0011111 1     12599999999


Q ss_pred             CCCeEEEEEEEeCC-----CC--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECC
Q psy16652        245 TDRGTYYCVAQNGV-----GR--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDG  311 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~-----~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~  311 (384)
                      +|+|.|.|.+.+..     +.  .......|.|.    .+|.+...++...+..|+.++|.|.+.+. | .+.+.|  ++
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~  166 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS  166 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CC
Confidence            99999999998753     11  11233455553    35666544555556689999999999884 4 347999  66


Q ss_pred             EEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        312 VQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       312 ~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      ..+....... ......+.....+.|+|.....+| |.|+|.|.|..+.......|.|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          167 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             GTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             cccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            5443221100 011111222234578999999999 999999999998877777776654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.67  E-value=1.6e-16  Score=129.24  Aligned_cols=173  Identities=16%  Similarity=0.233  Sum_probs=107.9

Q ss_pred             CCCCee-eeCcceeeeccCcEEEEEEeecC-CC--ccEEEEEeCCCCCCcccceeccCce--eeeCCceEEeeCCCCceE
Q psy16652         71 RTPTIS-YISQEQIKDIAQTADLKCSVQYA-DD--YPVIWMKMDTAKKMEPLPISMSGSL--IIHDSRFQLTTDPETSTY  144 (384)
Q Consensus        71 ~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  144 (384)
                      .+|.+. ..+....+.+|+.++|.|.+.+. |.  ..+.|++++....      ......  ...++.|..       ..
T Consensus        11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~------~~~~~~~~~~~~g~~~~-------~s   77 (231)
T 2w59_A           11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNL------RPDPMVLQEHFNGTYSA-------SS   77 (231)
T ss_dssp             -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCC------CCCCCEEEECTTSCEEE-------EE
T ss_pred             CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecc------ccccccceECCCCcEEE-------EE
Confidence            345554 44555567899999999999874 53  4999998775430      000000  012223322       34


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe------cCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEE
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR------RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTIS  216 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~  216 (384)
                      .|.|.+++.+|+|.|+|.+.+....   ..+.+.|.      .+|.+....+....+ .+..+.|.|.+.+. |. +.+.
T Consensus        78 ~L~I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~  153 (231)
T 2w59_A           78 AVPVSTQDWLSGERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIR  153 (231)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEecchhccCCCEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEE
Confidence            7999999999999999999865432   23344443      233222111111112 25579999999884 43 6899


Q ss_pred             EEeCCCcccccC--------------------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        217 WRRDNSAALSTG--------------------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       217 W~~~~~~~~~~~--------------------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      |++++..+....                    +.....+.|.|.....+|+|.|+|.|.|....
T Consensus       154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          154 WLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             EEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             EEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            999987664332                    11112246778888888899999999997654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=9.1e-16  Score=124.07  Aligned_cols=180  Identities=17%  Similarity=0.172  Sum_probs=110.2

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +...+..+.+.+|++|+|.|.+.+.+  ...+.|++.........+............+|+.+..+...+...|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            45557777899999999999987543  4579999976432212221111111111357888876545677899999999


Q ss_pred             CCCCeeEEEEEEEccC-----c--ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCc
Q psy16652        153 ETDAGIYKCEVIISLN-----N--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSA  223 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~  223 (384)
                      .+|+|.|+|.+.+...     .  .......|.|.......  ..+.+.+.. ....|.|.+.+ +|.+ .+.|.++ ..
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~--~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~  159 (229)
T 1hxm_A           84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPH--TKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK  159 (229)
T ss_dssp             GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCC--BCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred             HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCC--cCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence            9999999999975421     1  12234567776422111  122222222 23589999987 4554 8999998 65


Q ss_pred             ccccCcee--EeccEEEEcCCC-CCCCeEEEEEEEeCC
Q psy16652        224 ALSTGGSI--YRGNILKIPNIT-KTDRGTYYCVAQNGV  258 (384)
Q Consensus       224 ~~~~~~~~--~~~~~l~i~~~~-~~d~G~Y~C~~~~~~  258 (384)
                      +.......  ..++.+.+.... .++.|.|+|.+.|..
T Consensus       160 ~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~  197 (229)
T 1hxm_A          160 ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN  197 (229)
T ss_dssp             EEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             EecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCC
Confidence            54322211  122344443333 367889999999964

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.66  E-value=5.8e-16  Score=108.21  Aligned_cols=96  Identities=18%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.......    .....|.|.+++.+|+|.|+|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C   79 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE----KGLHSLIFEVVRASDAGAYAC   79 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEET----TTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcC----CCeEEEEECCCCcccCEEEEE
Confidence            4566666667778899999999999999999999999999998776544333211    123589999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeee
Q psy16652        352 KAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .|.|..|....++.|.|.+.
T Consensus        80 ~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           80 VAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEEECC
T ss_pred             EEEcCCCeEEEEEEEEEEec
Confidence            99999999999999998764

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.66  E-value=8.9e-17  Score=130.80  Aligned_cols=197  Identities=12%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             EEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc-cee-eeccCcEEEEEEeecCC----CccEEEEEeCCCCC
Q psy16652         41 TSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ-EQI-KDIAQTADLKCSVQYAD----DYPVIWMKMDTAKK  114 (384)
Q Consensus        41 G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~-v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~  114 (384)
                      |.|.|.++.....          +.......+|.+.+.+. ... +..|+.++|.|.+.+..    ...|.|++++....
T Consensus         1 ~~~~~~~~~~~~~----------c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~   70 (240)
T 4acp_A            1 GTKSCDKTHTCPP----------CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   70 (240)
T ss_dssp             --------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEEC
T ss_pred             CceeeeeeecCCC----------CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccC
Confidence            7888988875332          11111223455544443 333 55799999999998853    44799999876532


Q ss_pred             CcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEE--EEecCCccccCCCc
Q psy16652        115 MEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVEL--IVRRPPIISDNSTR  191 (384)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l--~v~~~~~~~~~~~~  191 (384)
                      ...    ........++.|....       .|.|.....+|.|.|+|++.+.... .....+.+  .+..+|.+....+.
T Consensus        71 ~~~----~~~~~~~~~g~~~~~s-------~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~  139 (240)
T 4acp_A           71 NAK----TKPREEQYNSTYRVVS-------VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS  139 (240)
T ss_dssp             CCE----ECCCEEC---CEEEEE-------EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC
T ss_pred             Cce----eccceECCCCeEEEEE-------EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC
Confidence            110    0000111234444433       6888888888899999999865442 22222222  12233433322221


Q ss_pred             eEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        192 SVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .. ...|+.+.|.|.+.+ +|.+ .+.|++++..+...         ++.....+.|.+.....++.|.|+|.|.|..-
T Consensus       140 ~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          140 RD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             GG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             hH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            11 124889999999988 5554 89999998765321         11222334677766666678999999999653

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.65  E-value=1.8e-15  Score=105.43  Aligned_cols=95  Identities=27%  Similarity=0.427  Sum_probs=77.7

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..........    ......+|.|.+++.+|+|.|+|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G~Y~C   79 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE----AEGGLCRLRILAAERGDAGFYTC   79 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEE----CGGGEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE----CCCCEEEEEEccCCcCCCEEEEE
Confidence            46777777777788999999999999999999999999999887654322211    11123479999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEee
Q psy16652        352 KAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|.|..|....++.|.|.+
T Consensus        80 ~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           80 KAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCCceeEEEEEEEEC
Confidence            9999999999999999875

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.65  E-value=1.9e-15  Score=105.36  Aligned_cols=94  Identities=22%  Similarity=0.326  Sum_probs=80.3

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++.+...     .....|.|.+++.+|+|.|+|
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C   79 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-----KGGFFLEIHKTDTSDSGLYTC   79 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe-----CCEEEEEECCCCcccCEEEEE
Confidence            466777777778889999999999999999999999999999987777665431     123479999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEee
Q psy16652        352 KAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|.|..|....++.|.|.+
T Consensus        80 ~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           80 TVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEeCCCcEeEEEEEEEEe
Confidence            9999999999999998864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.65  E-value=4.7e-16  Score=106.96  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=73.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC--EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG--VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+.........       .....|.|.+++.+|+|.|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~Y~   74 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK-------SSTTSIFFPSAKRADSGNYK   74 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEE-------TTEEEEECTTBCGGGCEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEec-------CCEEEEEECCCChhcCEEEE
Confidence            566655566677899999999999999999999999999  777544322211       13577999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEe
Q psy16652        351 CKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~  369 (384)
                      |.|.|..|....++.|.|.
T Consensus        75 C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           75 LKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEETTEEEEEEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEEEEC
Confidence            9999999999999988873

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.65  E-value=8.1e-16  Score=116.54  Aligned_cols=107  Identities=23%  Similarity=0.381  Sum_probs=86.2

Q ss_pred             EEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        267 AVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       267 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      .+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+....    .....|.|.+++.+|.
T Consensus        35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~  110 (154)
T 1fhg_A           35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE----EGNCSLTISEVCGDDD  110 (154)
T ss_dssp             CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT----TCEEEEEESSCCGGGC
T ss_pred             cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECC----CCeEEEEECCCChhcC
Confidence            445556788888777888999999999999999999999999999999877766654311    1246899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRETQTGDET  377 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  377 (384)
                      |.|+|.|.|..|....++.|.|..+|...+.
T Consensus       111 G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~  141 (154)
T 1fhg_A          111 AKYTCKAVNSLGEATCTAELLVETMGKEGEG  141 (154)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECC------
T ss_pred             EEEEEEEEECCCeEEEEEEEEEeCcCcCCCC
Confidence            9999999999999999999999988755443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=108.54  Aligned_cols=100  Identities=18%  Similarity=0.297  Sum_probs=82.3

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+....    ....+|.|.+++.+|+|.|+
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~   89 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN----TGRVTLLIKDVNKKDAGWYT   89 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT----TCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC----CCeEEEEECCCCcccCEEEE
Confidence            467777777788899999999999999999999999999998875 3454443211    12347999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        351 CKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      |.|.|..|.....+.|.|..+|..+
T Consensus        90 C~a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           90 VSAVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EEEEETTEEEEEEEEEEEECCSCCC
T ss_pred             EEEEcCCCeEEEEEEEEEeCCCCCC
Confidence            9999999999999999999887543

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.64  E-value=2.5e-15  Score=107.29  Aligned_cols=88  Identities=17%  Similarity=0.247  Sum_probs=71.6

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652        287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI  364 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  364 (384)
                      .+..+.|.|.+.|+|.|+|+|++||.++..+.+........  ......+.|.|.+++..|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            56789999999999999999999999998777654432211  1111246799999999999999999999999999999


Q ss_pred             EEEEeeeecC
Q psy16652        365 ELFDRETQTG  374 (384)
Q Consensus       365 ~l~v~~~~~~  374 (384)
                      .|.|...|..
T Consensus        94 ~l~v~~~P~~  103 (126)
T 1he7_A           94 MAAFMDNPFE  103 (126)
T ss_dssp             EECCCSCTTS
T ss_pred             EEEEEcCCCC
Confidence            9998877654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.64  E-value=2.1e-13  Score=130.01  Aligned_cols=225  Identities=14%  Similarity=0.129  Sum_probs=140.4

Q ss_pred             CCCCCcchhccccCCCCC---CCCCC--CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee
Q psy16652          2 IAPSPFDFVNRFQNTSTP---WDPST--QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS   76 (384)
Q Consensus         2 ~~~~~~w~~~~~~~~~~~---~~~~~--~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   76 (384)
                      |.+.+.|.+++.++..-.   .....  ....++.+..+...|.|.|.|.......              .....+|.+.
T Consensus       104 P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~--------------~~~~~~p~~~  169 (731)
T 2v5y_A          104 PLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLG--------------HPCTRTPHFL  169 (731)
T ss_dssp             CCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEES--------------SCCSSSCEEC
T ss_pred             CccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeee--------------cccccccccc
Confidence            567899999987764211   00011  3445567777777777777764221100              1123556665


Q ss_pred             eeCcceeeeccCcEEEEEEeecCCCccEE-EEE--eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYADDYPVI-WMK--MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~-W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                       .+....+.+|++++|.|.+.+.|.+.+. |++  ++..+       .       . ..+.. ........+|.|.+++.
T Consensus       170 -~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l-------~-------~-~~~~~-~~~~~~~~~l~I~~~~~  232 (731)
T 2v5y_A          170 -RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-------P-------L-KEIKV-TSSRRFIASFNVVNTTK  232 (731)
T ss_dssp             -CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCE-------E-------E-EEEEE-CCSSEEEEEEEECSCCT
T ss_pred             -cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccc-------c-------c-cceEE-eccccceEEEEEccccc
Confidence             4567889999999999999998888887 884  33221       0       0 00100 00112246899999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc----cCCC--eEEEEeCCCccccc
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG----FPAP--TISWRRDNSAALST  227 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~~~~--~v~W~~~~~~~~~~  227 (384)
                      .|+|.|+|.+.|..+...+....|.|..+|....  +..........+.|.|....    .+..  .+.|...+..... 
T Consensus       233 ~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~--~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~-  309 (731)
T 2v5y_A          233 RDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA--PPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND-  309 (731)
T ss_dssp             TTCEEEEEEEEETTEEEECCCEEEEEECCCCBSS--CCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEE-
T ss_pred             ccCeEEEEEEECCCCCcceeeEEEEEecCCCCCC--CcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceE-
Confidence            9999999999977654466677888887776542  22233335568899997632    1222  4667654322110 


Q ss_pred             CceeEeccEEEEcCCCCCCCeEEEEEEE--eCCCCc
Q psy16652        228 GGSIYRGNILKIPNITKTDRGTYYCVAQ--NGVGRG  261 (384)
Q Consensus       228 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~  261 (384)
                       ........+.|.++...+...|+|.+.  |..|..
T Consensus       310 -~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s  344 (731)
T 2v5y_A          310 -RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG  344 (731)
T ss_dssp             -EEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSC
T ss_pred             -EeccCcceEEEeCCCCCCEEEEEEEEEecCCCccc
Confidence             111234678999999888888888888  877764

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=106.35  Aligned_cols=93  Identities=23%  Similarity=0.412  Sum_probs=78.3

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++...        ....|.|.+++.+|+|.|+
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~   78 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--------EQGTLQIKNLRISDTGTYT   78 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--------TTCCEEEESCCTTTCCEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--------CCCEEEEccCCcccCEEEE
Confidence            467777777777889999999999999999999999999988863 3333321        3567999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeee
Q psy16652        351 CKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|.|..|....++.|.|.+++
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           79 CVATSSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             EEEECSSCCCBCCEEEEEESCC
T ss_pred             EEEEcCCCCEEEEEEEEEecCC
Confidence            9999999999999999988753

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.64  E-value=9.1e-16  Score=107.99  Aligned_cols=98  Identities=21%  Similarity=0.291  Sum_probs=77.9

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+              ..+.++.+..  .....+|.|
T Consensus        10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~I   73 (107)
T 3knb_B           10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL--------------AASERLSFPA--DGAEHGLLL   73 (107)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEECCE--ETTEEEEEE
T ss_pred             CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccc--------------cceeeEEEee--cCceEEEEE
Confidence            445789999999999999999999999999998999999987642              2334555544  345678999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP  183 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  183 (384)
                      .+++.+|+|.|+|.+.|.. +..+..+.|.|..+|
T Consensus        74 ~~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           74 TAALPTDAGVYVCRARNAA-GEAYAAAAVTVLEPP  107 (107)
T ss_dssp             SSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEC--
T ss_pred             ecCChhhCEEEEEEEEECC-CEEEEEEEEEEEcCC
Confidence            9999999999999998655 456677888887664

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.64  E-value=1.2e-14  Score=111.60  Aligned_cols=161  Identities=13%  Similarity=0.086  Sum_probs=110.1

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +.+.|+...|.+|+++.|+|.+....+..+.|...-..            .  .       ..+...+...|.|.+++. 
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------~--~-------~~~~~~~~~~l~l~~vs~-   59 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK------------K--E-------LLLPGNNRKVYELSNVQE-   59 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCE------------E--E-------ECSSSSSEEEEEEEEECS-
T ss_pred             eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCC------------c--c-------EeccCCceeEEEEEecCc-
Confidence            45567778899999999999986544445777641110            0  0       001123334689999984 


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI  231 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~  231 (384)
                      | |.|.|.+. ..+...+..+.|.|+.+|......+....+.+|+.++|.|.+.+ .|..  .|+|++++..+.......
T Consensus        60 ~-g~y~C~~~-c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~  137 (185)
T 1iam_A           60 D-SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG  137 (185)
T ss_dssp             C-BCCEEEEE-CSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT
T ss_pred             C-CEEEEEEE-CCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCC
Confidence            4 99999984 55567888899999988876655555556899999999999976 5554  489999987764322000


Q ss_pred             -EeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        232 -YRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       232 -~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                       ..+.+|++.....+|...|+|.|.+..+
T Consensus       138 ~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          138 EPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             TTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             ccccEEEEEeceeccCCCeEEEEEEecCc
Confidence             1123577665555565699999999766

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.63  E-value=1.6e-15  Score=122.97  Aligned_cols=172  Identities=17%  Similarity=0.293  Sum_probs=105.8

Q ss_pred             eEEeecCceEEEEEEeccc--CCCeEEEEeCCCccc--------c-----------cCceeE------eccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAAL--------S-----------TGGSIY------RGNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~--------~-----------~~~~~~------~~~~l~i~~~~~  244 (384)
                      .+.+.+|++++|.|.+.+.  +...+.|++......        .           ..+...      ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            4668999999999998652  345799998432110        0           011111      112599999999


Q ss_pred             CCCeEEEEEEEeCCC--------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEEC
Q psy16652        245 TDRGTYYCVAQNGVG--------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKD  310 (384)
Q Consensus       245 ~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~  310 (384)
                      +|+|.|.|.+.+..+        ........|.|.    .+|.+...++...+..|+.+.|.|.+.+. | .+.+.|  +
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~  166 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N  166 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--C
Confidence            999999999976421        000122345553    34555543333345678999999999884 4 347999  5


Q ss_pred             CEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652        311 GVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL  366 (384)
Q Consensus       311 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  366 (384)
                      +..+...... .......+.....+.|+|.....+| |.|+|.|.|..+.......|
T Consensus       167 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  222 (226)
T 3mlr_H          167 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  222 (226)
T ss_dssp             GGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             CccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence            4433221100 0011111222234578899998889 99999999998876655444

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=3.8e-16  Score=111.25  Aligned_cols=101  Identities=22%  Similarity=0.334  Sum_probs=84.0

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........    ......|.|.+++.+|+|.|+|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR----ENGVHSLIIEPVTSRDAGIYTC   83 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEEC----TTSCEEEEESSCCGGGCSBBCE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEe----cCCeEEEEEeeCCcccCEEEEE
Confidence            467777777778889999999999999999999999999988876655433321    1124589999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeeecCCc
Q psy16652        352 KAANKYGSAQKEIELFDRETQTGDE  376 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~~~~~~~  376 (384)
                      .|.|..|....++.|.|..++.+|.
T Consensus        84 ~a~n~~g~~~~~~~l~V~~~p~~P~  108 (110)
T 2dm3_A           84 IATNRAGQNSFSLELVVAAKESGPS  108 (110)
T ss_dssp             EEECSSCEEEECCEEEEECCCCSSS
T ss_pred             EEECCCCEEEEEEEEEEeCCCCCCC
Confidence            9999999999999999999887654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=8.1e-16  Score=109.48  Aligned_cols=101  Identities=25%  Similarity=0.329  Sum_probs=82.4

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+...    ......|.|.+++.+|.|.|+
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD----LDGTCSLHTTASTLDDDGNYT   82 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC----TTCEEEEEESSCCTTTCSCCE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC----CCcEEEEEECCCChhhCEEEE
Confidence            356666666777889999999999999999999999999998875 344444321    112347999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeeecCCc
Q psy16652        351 CKAANKYGSAQKEIELFDRETQTGDE  376 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~~~~~  376 (384)
                      |.|.|..|.....+.|.|..++..|.
T Consensus        83 C~a~N~~g~~~~~~~l~V~~~~~~P~  108 (110)
T 2dm2_A           83 IMAANPQGRISCTGRLMVQAVNSGPS  108 (110)
T ss_dssp             EEEECTTCCEEECCCEEEECCSCCSS
T ss_pred             EEEEECCCeEEEEEEEEEECCCCCCC
Confidence            99999999999999999998877654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=8.7e-16  Score=107.05  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=77.1

Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+........        .....|.|.+++.+|+|.|
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y   79 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE--------AGVAELHIQDALPEDHGTY   79 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEE--------TTEEEEEECSCCTTCCBCE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEee--------CCeEEEEECCCChhhCEEE
Confidence            45678887777788899999999999999999999999999988865443211        1356799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEe
Q psy16652        350 ACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       350 ~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +|.|.|..|....++.|.|+
T Consensus        80 ~C~a~N~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           80 TCLAENALGQVSCSAWVTVH   99 (99)
T ss_dssp             EEEEECSSCEEEEECCEEEC
T ss_pred             EEEEEECCCeEEEEEEEEEC
Confidence            99999999999988888773

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.62  E-value=2.1e-15  Score=124.80  Aligned_cols=175  Identities=19%  Similarity=0.302  Sum_probs=107.2

Q ss_pred             EEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc-------------------cCceeE------eccEEEEcCCCCC
Q psy16652        193 VIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS-------------------TGGSIY------RGNILKIPNITKT  245 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~-------------------~~~~~~------~~~~l~i~~~~~~  245 (384)
                      ..+.+|++++|.|.+.+.  ....+.|++.......                   ..+...      ....|.|.+++.+
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE  112 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence            457899999999998653  2457999974321100                   011111      1125999999999


Q ss_pred             CCeEEEEEEEeCCC---------C-ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cC-CCeEEEEE
Q psy16652        246 DRGTYYCVAQNGVG---------R-GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YP-PPAIVWIK  309 (384)
Q Consensus       246 d~G~Y~C~~~~~~~---------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~  309 (384)
                      |+|.|.|.+.+..+         . .......|.|.    .+|.+....+...+..|+.++|.|.+.+ +| ++.+.|  
T Consensus       113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--  190 (256)
T 3sob_H          113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  190 (256)
T ss_dssp             GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--
T ss_pred             cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--
Confidence            99999999986431         0 11222345554    3555654444445678999999999987 45 347999  


Q ss_pred             CCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        310 DGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      ++..+....... ......+.....+.|.|.....+| |.|+|.|.|..+.......|.+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~  251 (256)
T 3sob_H          191 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS  251 (256)
T ss_dssp             GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred             CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence            554443211100 011111122234578899998899 999999999998877777776554

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.62  E-value=1.7e-14  Score=123.46  Aligned_cols=180  Identities=19%  Similarity=0.316  Sum_probs=109.9

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--------------CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEee-
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--------------DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTT-  137 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--------------~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-  137 (384)
                      .++..+.+.+|++++|.|.....+              ...+.|++...... ..+.+...+..    ....++..+.. 
T Consensus       163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~-~~vliY~~g~~~q~~~~~~g~~~f~~~  241 (401)
T 3f8u_B          163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG-HLLLAATPGLNGQMPAAQEGAVAFAAW  241 (401)
T ss_dssp             ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEE-EEEEEECTTSCCCCCCCCTTCEEEEEE
T ss_pred             CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCC-cEEEEEeCCCccccccccCCeEEEEee
Confidence            345567789999999999986432              35699999654311 12222222211    11122222211 


Q ss_pred             --C----CCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCc-eEEEEEEecc-
Q psy16652        138 --D----PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ-TVYLYCYANG-  209 (384)
Q Consensus       138 --~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~-  209 (384)
                        +    ...++.+|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..+|.+.........+..|+ .+.|.|.+.+ 
T Consensus       242 ~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf  320 (401)
T 3f8u_B          242 DDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY-LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF  320 (401)
T ss_dssp             SCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred             cccccccccCCcEEEEECcCCHhhCceEEEEEEecc-cceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCC
Confidence              1    12467899999999999999999997543 3455677888888776653322211134676 8999999987 


Q ss_pred             cCC--CeEEEE-eCCC---cccc------------cCceeEeccEEEEcCCCC-CCCeEEEEEEEeCC
Q psy16652        210 FPA--PTISWR-RDNS---AALS------------TGGSIYRGNILKIPNITK-TDRGTYYCVAQNGV  258 (384)
Q Consensus       210 ~~~--~~v~W~-~~~~---~~~~------------~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~  258 (384)
                      +|.  +++.|. +++.   ....            .++...-.+.|.+...+. ++.+.|+|.+.|..
T Consensus       321 yP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             BSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             cCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            565  689995 7652   1111            111122234566666543 34459999999965

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.4e-15  Score=107.65  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             EEecCeEEec---CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        270 VEFAPVITIN---RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       270 v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      +..+|.+...   +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+. ..++.+..     ......|.|.+++.+|+
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~-----~~~~~~L~i~~~~~~D~   91 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRT-----SDFDTVFFVRQAARSDS   91 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEE-----CSSEEEEEESSCCTTTC
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEE-----CCCeEEEEECCCChhcC
Confidence            3446766543   345678889999999999999999999999999986 34444331     11345699999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|+|.|.|..|.....+.|.|.++|
T Consensus        92 G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           92 GEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            99999999999999999999998765

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=1.7e-14  Score=115.09  Aligned_cols=161  Identities=17%  Similarity=0.254  Sum_probs=98.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc----------ccCceeEe-------ccEEEEcCCCCCCCeEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL----------STGGSIYR-------GNILKIPNITKTDRGTY  250 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~----------~~~~~~~~-------~~~l~i~~~~~~d~G~Y  250 (384)
                      +..+.+.+|+++.|.|.+.+.+ +.+.|++...  ...          ...+....       ...|.|.+++.+|+|.|
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (207)
T 1ypz_E            8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTY   86 (207)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEE
T ss_pred             CCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEE
Confidence            4567789999999999997643 4899998542  111          11122211       23799999999999999


Q ss_pred             EEEEEeCCC---------C-ceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCC
Q psy16652        251 YCVAQNGVG---------R-GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQ  318 (384)
Q Consensus       251 ~C~~~~~~~---------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~  318 (384)
                      .|.+.+..+         . .......|.|...+... .++...+.. ..+.|.|.+.+. |. +.+.|+++ ..+....
T Consensus        87 ~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~-~~P~v~~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~  163 (207)
T 1ypz_E           87 FCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPP-AKPSVFIMK-NGTNVACLVKDFYPKEVTISLRSS-KKIVEFD  163 (207)
T ss_dssp             EEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCC-CCCEEEEEE-ETTEEEEEEEEESSSCCEEEEECS-SEEEECC
T ss_pred             EEEEecCCcccccccccceeeecCccEEEEccCCCCC-CCCeEEEeC-CCCeEEEEEeeEeCCCeEEEEecC-CcccCCc
Confidence            999998642         1 01123466665421110 111111112 236899999875 44 69999999 6665332


Q ss_pred             ceeeeeeeccCccccceEEEeecCC-CCCeEEEEEEEeCCcceE
Q psy16652        319 HYSVSHFATSDEFSDTSLRVITIER-RQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~  361 (384)
                      . ....      ..++.+.+..... +|.|.|+|.|.|..+..+
T Consensus       164 ~-~~~~------~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          164 P-AIVI------SPSGKYSAVKLGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             C-EEEE------CTTSSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred             c-ceEE------cCCCcEEEEEeecccCCCcEEEEEEECCccEe
Confidence            1 1111      0233444444443 678999999999987543

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.60  E-value=2.2e-14  Score=111.11  Aligned_cols=162  Identities=9%  Similarity=-0.001  Sum_probs=109.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+.+.|+...|.+|+++.|+|.+.-..+..+.|...-..                  ..+  ..  ......+.|.+++ 
T Consensus         4 ~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------------~~~--~~--g~~~~~~~ls~vs-   60 (196)
T 3bn3_B            4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRR------------------NGT--QR--GLRWLARQLVDIR-   60 (196)
T ss_dssp             CEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEE------------------EEE--EE--ETTEEEEEEEEEC-
T ss_pred             EEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCC------------------eeE--cc--ccCceEEEEEEEc-
Confidence            566778888899999999999986443436777642110                  000  00  1223358899998 


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCCe--EEEEeCCCcccccCce
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPT--ISWRRDNSAALSTGGS  230 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~  230 (384)
                      +|.+.|.|.+. ..+...+..+.|.|+.+|......+....+.+|+.++|.|.+.+ +|..+  +.|++++..+......
T Consensus        61 ~d~~~~~C~~~-c~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~  139 (196)
T 3bn3_B           61 EPETQPVCFFR-CARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA  139 (196)
T ss_dssp             SSEECCEEEEE-ETTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT
T ss_pred             cCCCceEEEEE-CCCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc
Confidence            88888999975 44567788899999988766554444334789999999999976 55544  8999998765422200


Q ss_pred             ------eEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        231 ------IYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       231 ------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                            ......+.+.....+|...|+|.|.+..+
T Consensus       140 ~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          140 GEPPRARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             TSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             cccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence                  00113455655555555599999998765

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=100.79  Aligned_cols=89  Identities=22%  Similarity=0.307  Sum_probs=75.4

Q ss_pred             ecCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        278 INRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       278 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      ..+....+.+|+.+.|.|.+.|. |.+.+.|++++..+....++.+...     .....|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKVVND   80 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEEECC
Confidence            34556778899999999999997 8999999999999987777665431     12458999999999999999999999


Q ss_pred             CcceEEEEEEEEeee
Q psy16652        357 YGSAQKEIELFDRET  371 (384)
Q Consensus       357 ~g~~~~~~~l~v~~~  371 (384)
                      .|....++.|.|.+.
T Consensus        81 ~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           81 YGEDSSYAELFVKGV   95 (97)
T ss_dssp             SCEEEEEEEEEETTT
T ss_pred             CCeEeEEEEEEEEec
Confidence            999999999998753

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=5.9e-15  Score=106.35  Aligned_cols=102  Identities=22%  Similarity=0.356  Sum_probs=77.3

Q ss_pred             EEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        267 AVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       267 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      .|.|.++|.+......   ...+...|.|.+.|.|.|.+.|+++|..+..+.+......... ....+.|.|.+++.+|+
T Consensus         2 ~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   77 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EISEGCLLFNKPTHYNN   77 (118)
T ss_dssp             --CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS-SEEEEEEEEESCCGGGC
T ss_pred             EEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccC-ccccEEEEECCCChhcC
Confidence            4567778876443221   2236678999999999999999999999987776554432221 12456899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|+|.|.|..|...+++.|.|...|
T Consensus        78 G~Y~C~a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           78 GNYTLIAKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEEEEECCCCeEeeEEEEEEccCC
Confidence            99999999999999999998877665

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.59  E-value=5.2e-15  Score=102.08  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+.+|+.+.|.|.+.|.| +.+.|+++|..+....++.+         ....|.|.+++.+|+|.|+|.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI---------TGEEVEVRDSIPADSGLYACV   78 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEE---------CSSEEEESSCCGGGSEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEE---------eCCEEEECCCChHHCEEEEEE
Confidence            34554455667788999999999999987 79999999998877666543         256899999999999999999


Q ss_pred             EEeCCcceEEEEEEEEe
Q psy16652        353 AANKYGSAQKEIELFDR  369 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~  369 (384)
                      |.|..|.....+.|.|.
T Consensus        79 a~n~~g~~~~~~~l~V~   95 (95)
T 2ckn_A           79 TSSPSGSDTTYFSVNVS   95 (95)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             eccCCCcEEEEEEEEEC
Confidence            99999999999888773

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.59  E-value=1.4e-13  Score=105.76  Aligned_cols=158  Identities=15%  Similarity=0.277  Sum_probs=106.0

Q ss_pred             CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccc-cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALS-TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      ++...+.+|+++.|+|.+.. +.+ .+.|...-..... ..+  .....|.|.+++. | |.|.|.+... +....+.+.
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~--~~~~~l~l~~vs~-~-g~y~C~~~c~-~~~~~~~~~   79 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG--NNRKVYELSNVQE-D-SQPMCYSNCP-DGQSTAKTF   79 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS--SSEEEEEEEEECS-C-BCCEEEEECS-SCEEEEECE
T ss_pred             CCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC--CceeEEEEEecCc-C-CEEEEEEECC-CCceEEEEE
Confidence            44567899999999999964 444 4777642111100 100  1224688999974 3 9999998654 334578888


Q ss_pred             EEEEecCe-EEecCCCcccccCCcEEEEEEEec-cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC
Q psy16652        268 VEVEFAPV-ITINRPRQGQALQYDAILECHVEA-YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       268 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      |.|..+|. +.+.+....+.+|+.++|.|.+.| .|.+  +|.|+++++++.....  .      ....+.+|++...+.
T Consensus        80 l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~--~------~~~~~~tl~~~~~re  151 (185)
T 1iam_A           80 LTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--V------GEPAEVTTTVLVRRD  151 (185)
T ss_dssp             EEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--C------TTTEEEEEEEECCSS
T ss_pred             EEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC--C------CccccEEEEEeceec
Confidence            99988775 445555566899999999999988 4544  4899999998864320  0      011234566665555


Q ss_pred             CCCeEEEEEEEeCCcceE
Q psy16652        344 RQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~g~~~  361 (384)
                      +|...|+|.|.|..+...
T Consensus       152 D~g~~~sC~A~~~l~~~g  169 (185)
T 1iam_A          152 HHGAQFSCRTELDLRPQG  169 (185)
T ss_dssp             CSSCEEEEEEEEECGGGT
T ss_pred             cCCCeEEEEEEecCcccC
Confidence            555599999999988443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=1.1e-14  Score=104.01  Aligned_cols=102  Identities=17%  Similarity=0.204  Sum_probs=75.8

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEecc---CCCeEEEEECCEE-ec--CCCceeeeee-eccCccccceEEEeecCCCCC
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAY---PPPAIVWIKDGVQ-IM--NNQHYSVSHF-ATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~-~~--~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      |.+...+....+.+|+.++|.|.+.+.   |.|.|.|++++.. +.  ...++.+... ..........|.|.+++.+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            345556777889999999999999874   8899999997521 11  1334444321 111122357899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEee-eecCC
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRE-TQTGD  375 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~-~~~~~  375 (384)
                      |.|+|.|.|..|..+.+++|.|.+ ++..|
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p  117 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTP  117 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence            999999999999999999999999 54333

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.58  E-value=2.2e-15  Score=106.15  Aligned_cols=93  Identities=16%  Similarity=0.299  Sum_probs=79.4

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.+...     .....|.|.+++.+|+|.|+|
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C   87 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-----KYKSTFEISSVQASDEGNYSV   87 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEEC-----SSEEEEEECCCCSSCCSEEEE
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEECcCCchhCEEEEE
Confidence            356677777788899999999999999999999999999998877776655431     135689999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEe
Q psy16652        352 KAANKYGSAQKEIELFDR  369 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~  369 (384)
                      .|.|..|....++.|.|.
T Consensus        88 ~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           88 VVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CCBCSSCBCCEEEEEEEC
T ss_pred             EEEeCCCeEEEEEEEEEE
Confidence            999999999999999875

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.58  E-value=2.4e-16  Score=114.49  Aligned_cols=109  Identities=24%  Similarity=0.403  Sum_probs=87.6

Q ss_pred             eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCe-EEEEECCEEecC--CCceeeeeeeccCccccceEEEe
Q psy16652        263 KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       263 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      ...+.|.|..+|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+..  ..++.+...... ....+.|.|.
T Consensus         4 ~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~I~   81 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-EGVISTLTIS   81 (122)
T ss_dssp             SCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEET-TEEEEEEECT
T ss_pred             ceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEEc
Confidence            3456778888999887 7778899999999999999999997 999999998875  345544322111 1124589999


Q ss_pred             ecCCCCC-eEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        340 TIERRQF-GQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       340 ~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +++.+|. |.|+|.|.|..|.....+.|.|.+++.
T Consensus        82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  116 (122)
T 2cry_A           82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM  116 (122)
T ss_dssp             TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             CCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence            9999998 999999999999999999999987644

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.58  E-value=1.8e-16  Score=127.45  Aligned_cols=174  Identities=14%  Similarity=0.162  Sum_probs=102.3

Q ss_pred             CCe-eeeCcceeeeccCcEEEEEEeecCCC---ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         73 PTI-SYISQEQIKDIAQTADLKCSVQYADD---YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        73 p~~-~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      |.+ ...|....+.+|++++|.|.+.+.++   ..+.|  ++......   .. ........++|.       ....|.|
T Consensus         4 p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~---~~-~~~~~~~~g~~~-------~~~~L~I   70 (214)
T 1ow0_A            4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSA---VQ-GPPERDLCGCYS-------VSSVLPG   70 (214)
T ss_dssp             CCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCC---EE-CCCCCCSTTCCC-------EEEECTT
T ss_pred             CEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCc---cc-CCceECCCCcEE-------EEEEEEE
Confidence            444 34466677899999999999987643   68999  33322110   00 000001112221       3457999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEE---EecCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELI---VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSA  223 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~---v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~  223 (384)
                      .+++.+|+|.|+|.+.+.... ......+.   +..+|.+....+....+..|+.+.|.|.+.|. |. +.+.|++++..
T Consensus        71 ~~~~~~D~g~Y~C~~~~~~~~-~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~  149 (214)
T 1ow0_A           71 CAEPWNHGKTFTCTAAYPESK-TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE  149 (214)
T ss_dssp             THHHHHHTCEEEEEECCSSCS-SCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE
T ss_pred             eHHHcCCCCeEEEEEecCCCC-CceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE
Confidence            999999999999999755432 11112222   22344433222222224578999999999884 54 49999999876


Q ss_pred             ccccCc-----eeE---ec------cEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        224 ALSTGG-----SIY---RG------NILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       224 ~~~~~~-----~~~---~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      +.....     ...   .+      ..|.+.....++.|.|+|.|.|....
T Consensus       150 l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          150 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             CCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            543310     111   12      23444444445689999999996543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=6e-15  Score=106.33  Aligned_cols=94  Identities=24%  Similarity=0.347  Sum_probs=78.8

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. ..++...        .+.+|.|.+++.+|+|.|+
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~   78 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL--------ENGVLQIRYAKLGDTGRYT   78 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEE--------ETTEEEEESCCGGGCCCEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEc--------cCCEEEEccCCcCCCEEEE
Confidence            356666666777889999999999999999999999999988864 3344332        3568999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeeec
Q psy16652        351 CKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      |.|.|..|.....+.|.|.+++.
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           79 CIASTPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             EEEECSSCEEEEECCEEEECCSC
T ss_pred             EEEEcCCCcEEEEEEEEEEeCCC
Confidence            99999999999999999987753

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=5.3e-15  Score=102.75  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+.+|+.+.|.|.+  .|.+.+.|+++|..+..+.++.+....     ....|.|.+++.+|+|.|+|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKG-----RIHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECS-----SEEEEEESSCCGGGCSEEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeC-----CEEEEEECCCChhhCEEEEEE
Confidence            4555556667788999999999999  788999999999999888877765311     245799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeeec
Q psy16652        353 AANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      |.|.  ..+.+..|.|.++|.
T Consensus        80 a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           80 PDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             ESSS--CCCEEEEEEEECCSC
T ss_pred             EcCC--CeeEEEEEEEeCCCC
Confidence            9998  556777888887754

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.57  E-value=3.5e-14  Score=124.07  Aligned_cols=164  Identities=16%  Similarity=0.198  Sum_probs=103.4

Q ss_pred             eeccCcEEEEEEeecC---C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         84 KDIAQTADLKCSVQYA---D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +..|++++|.|.+.+.   + ...|.|++++.......    ........++.+..       ...|.|..++.+|+|.|
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~-------~s~L~I~~~~~~D~g~Y  248 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQ----TQPREEQFNSTFRS-------VSELPIMHQDWLNGKEF  248 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcc----cCCCCcccCCcEEE-------EEEEEechHhccCCCEE
Confidence            7899999999999875   3 24799999885421110    00000112223322       33699999999999999


Q ss_pred             EEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEeccc-C-CCeEEEEeCCCccccc-------
Q psy16652        160 KCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-P-APTISWRRDNSAALST-------  227 (384)
Q Consensus       160 ~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~-------  227 (384)
                      +|.+.+..... ....+.+  .+..+|.+.... .......|+.++|.|.+.+. | ..+|.|++++..+...       
T Consensus       249 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~-~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~  327 (376)
T 2aty_A          249 KCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIP-PPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIM  327 (376)
T ss_pred             EEEEecCCCCCceEEEEcCCCCCCcCCeEEeeC-CCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceE
Confidence            99998654422 2222222  233445444322 22223458899999999884 3 3589999998765321       


Q ss_pred             --CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        228 --GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       228 --~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                        ++.......|.|.....+|.|.|+|.|.|...
T Consensus       328 ~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          328 NTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence              11122234688888878889999999998654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.57  E-value=7.1e-15  Score=102.11  Aligned_cols=96  Identities=19%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++.....            ....++.+..  .....+|.|.
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~------------~~~~~~~~~~--~~~~~~L~I~   68 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHS------------QEQGRFHIEN--TDDLTTLIIM   68 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCT------------TGGGTEEEEE--CSSEEEEEES
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeee------------eccceeeeec--ccceEEEEEc
Confidence            3567888888888999999999999999999999999998764211            1223555555  4556789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus        69 ~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~   98 (100)
T 3knb_A           69 DVQKQDGGLYTLSLGNEF-GSDSATVNIHIR   98 (100)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             CCCccCCEEEEEEEEECC-CEEEEEEEEEEE
Confidence            999999999999998654 456677777775

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.55  E-value=3.1e-14  Score=97.30  Aligned_cols=88  Identities=14%  Similarity=0.074  Sum_probs=70.3

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+.+..+.+|+.+.|.|.+.+ +++.+.|+++|..+..+.++.+....     ....|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g-----~~~~L~I~~v~~~D~G~Y~C~   78 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQ   78 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEEC-----CEEEEEECCCChhhCEEEEEE
Confidence            456666677788999999999999987 55789999999999887777655311     245799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEee
Q psy16652        353 AANKYGSAQKEIELFDRE  370 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~  370 (384)
                      |.|.    ..+..|.|.+
T Consensus        79 a~n~----~~sa~L~V~~   92 (93)
T 1waa_A           79 AANT----KSAANLKVKE   92 (93)
T ss_dssp             ETTE----EEEEEEEEEC
T ss_pred             ECCC----cEEEEEEEEc
Confidence            9874    3566777764

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.55  E-value=4.3e-14  Score=99.98  Aligned_cols=98  Identities=13%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCC---CeEEEEECCEEecC---CCceeeeeeecc-CccccceEEEeecCCCC
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPP---PAIVWIKDGVQIMN---NQHYSVSHFATS-DEFSDTSLRVITIERRQ  345 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d  345 (384)
                      .|.+...+....+.+|+.++|.|.+.|.|.   |.+.|++++.....   ..++.+...... .......|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            355555667778899999999999999998   89999998732221   123333221111 11235689999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        346 FGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +|.|+|.|.|..|..+.++.|.|.+
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVHE  108 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CEEEEEEEecCCCceEEEEEEEEeC
Confidence            9999999999999999999998863

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=1.6e-14  Score=96.34  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=64.9

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ...+.+|+.+.|.|.+.+ |.|.+.|++||.++..+.++.+....     ....|.|.+++.+|+|.|+|.|.|    ..
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n----~~   74 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAG-----ARQVLRVQGARSGDAGEYLCDAPQ----DS   74 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECS-----SCEEEEESSCSSTTCEEEEEECTT----TC
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecC-----CeEEEEecCCCCcccEEEEEEECC----EE
Confidence            456788999999999976 88999999999999988877665311     345799999999999999999855    45


Q ss_pred             EEEEEEEeee
Q psy16652        362 KEIELFDRET  371 (384)
Q Consensus       362 ~~~~l~v~~~  371 (384)
                      .++.|.|.+|
T Consensus        75 ~~a~l~V~eP   84 (84)
T 2lu7_A           75 RIFLVSVEEP   84 (84)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEECC
Confidence            6677877654

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.55  E-value=1.6e-13  Score=117.47  Aligned_cols=175  Identities=18%  Similarity=0.270  Sum_probs=110.2

Q ss_pred             ceEEeecCceEEEEEEecccC--------------CCeEEEEeCCCc----c------------cccCc-----------
Q psy16652        191 RSVIVSEGQTVYLYCYANGFP--------------APTISWRRDNSA----A------------LSTGG-----------  229 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~--------------~~~v~W~~~~~~----~------------~~~~~-----------  229 (384)
                      ..+.+..|++++|.|.....+              ...+.|++....    +            ....+           
T Consensus       166 ~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~  245 (401)
T 3f8u_B          166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE  245 (401)
T ss_dssp             SSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCC
T ss_pred             CcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecccc
Confidence            346688999999999875322              246999863210    0            00001           


Q ss_pred             ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcc-cccCC-cEEEEEEEec-cCC-
Q psy16652        230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG-QALQY-DAILECHVEA-YPP-  302 (384)
Q Consensus       230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~-~p~-  302 (384)
                         ....+..|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+.+.+.... +..|+ .++|.|.+.+ +|. 
T Consensus       246 ~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~  324 (401)
T 3f8u_B          246 PWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSG  324 (401)
T ss_dssp             SSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSST
T ss_pred             cccccCCcEEEEECcCCHhhCceEEEEEEecccce-eEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCC
Confidence               11234589999999999999999999876553 5678888999998887655444 45675 7999999988 465 


Q ss_pred             -CeEEEE-ECCE---EecCCCce---eeeeeeccCccccceEEEeecCCC-CCeEEEEEEEeCC---cceEEEEEE
Q psy16652        303 -PAIVWI-KDGV---QIMNNQHY---SVSHFATSDEFSDTSLRVITIERR-QFGQYACKAANKY---GSAQKEIEL  366 (384)
Q Consensus       303 -~~v~W~-~~~~---~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~---g~~~~~~~l  366 (384)
                       +.+.|. +++.   .+......   ......++.....+.|.+...+.+ +.+.|+|.+.|..   |....+++|
T Consensus       325 ~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL  400 (401)
T 3f8u_B          325 GLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL  400 (401)
T ss_dssp             TCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred             CcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence             689995 7652   11111100   111111122222344555554433 4459999999986   555555554

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.55  E-value=2.1e-14  Score=100.11  Aligned_cols=83  Identities=19%  Similarity=0.343  Sum_probs=67.8

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.......    .....|.|.+++.+|+|.|+|.|.|..|...
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~   92 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   92 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe----cCeEEEEEccCCcCCCEEEEEEEEeCCCEEE
Confidence            355778999999999999999999999999988765432211111    1346899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy16652        362 KEIELFD  368 (384)
Q Consensus       362 ~~~~l~v  368 (384)
                      .++.|.|
T Consensus        93 ~~~~l~V   99 (100)
T 3caf_A           93 HTYHLDV   99 (100)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888876

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=1.6e-13  Score=98.17  Aligned_cols=100  Identities=19%  Similarity=0.238  Sum_probs=79.8

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++...              ....++.+..  ......|.|.
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~--------------~~~~~~~~~~--~~~~~~L~I~   68 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI--------------QESEHMKVEN--SENGSKLTIL   68 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBC--------------CCSSSEEEEE--CSSEEEEEET
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEEC--------------cCCCCEEEEE--cCCEEEEEEC
Confidence            45788888888889999999999999999888999999987652              2234555554  3446789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS  186 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~  186 (384)
                      +++.+|+|.|+|.+.|.. +..+..+.|.|..+|..+
T Consensus        69 ~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           69 AARQEHCGCYTLLVENKL-GSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             TCCTTTCEEEEEEEECSS-CEEECCEEEEEECSCSCC
T ss_pred             CCChhcCEEEEEEEEECC-CcEEEEEEEEEECCCCCC
Confidence            999999999999998654 456778889888766544

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.54  E-value=5.3e-14  Score=116.92  Aligned_cols=175  Identities=18%  Similarity=0.306  Sum_probs=107.6

Q ss_pred             eEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc--------c-----------cCceeE------eccEEEEcCCCC
Q psy16652        192 SVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL--------S-----------TGGSIY------RGNILKIPNITK  244 (384)
Q Consensus       192 ~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~--------~-----------~~~~~~------~~~~l~i~~~~~  244 (384)
                      ...+.+|++++|.|.+.+  .....+.|++......        .           ..+...      ....|.|.+++.
T Consensus        32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTA  111 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCh
Confidence            356889999999999864  3346899998432110        0           011111      123599999999


Q ss_pred             CCCeEEEEEEEe-------CC------------C-C----ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEE
Q psy16652        245 TDRGTYYCVAQN-------GV------------G-R----GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECH  296 (384)
Q Consensus       245 ~d~G~Y~C~~~~-------~~------------~-~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~  296 (384)
                      +|+|.|.|.+.+       ..            . .    .......|.|.    .+|.+...++......|+.++|.|.
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~  191 (267)
T 3u1s_H          112 DDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL  191 (267)
T ss_dssp             GGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEE
T ss_pred             hhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEE
Confidence            999999999962       00            0 0    01112345553    3556654444444567899999999


Q ss_pred             Eec-cC-CCeEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        297 VEA-YP-PPAIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       297 ~~~-~p-~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +.+ +| ++.+.|  ++..+....... ......+.....+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       192 ~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~~  264 (267)
T 3u1s_H          192 VKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  264 (267)
T ss_dssp             EEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC-
T ss_pred             EeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcccC
Confidence            987 45 458999  665543221110 011111222234568898888888 99999999998776666555543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.9e-14  Score=98.35  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.|...+.+..+.+|+++.|.|.+  .+.+.+.|++++...              ..+.++.+..  ......|.|
T Consensus         4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l--------------~~~~r~~i~~--~~~~~~L~I   65 (100)
T 2yuz_A            4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPV--------------QESDRLKVVQ--KGRIHKLVI   65 (100)
T ss_dssp             SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEEC--------------CCCSSEEEEE--CSSEEEEEE
T ss_pred             CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEEC--------------CCCCcEEEEE--eCCEEEEEE
Confidence            3457788888889999999999999999  677899999987642              2346666665  455678999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI  184 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  184 (384)
                      .+++.+|+|.|+|.+.|.   ..+....|.|..+|.
T Consensus        66 ~~v~~~D~G~Y~C~a~N~---~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           66 ANALTEDEGDYVFAPDAY---NVTLPAKVHVISGPS   98 (100)
T ss_dssp             SSCCGGGCSEEEEEESSS---CCCEEEEEEEECCSC
T ss_pred             CCCChhhCEEEEEEEcCC---CeeEEEEEEEeCCCC
Confidence            999999999999999754   456677888887764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=99.74  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ...+.+|+.+.|.|.+.+.| |.+.|++++..+....++.+.         ...|.|.+++.+|.|.|+|.|.|..|...
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   81 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---------GEEVEVQDSVPADSGLYACVTSSPSGSDT   81 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---------SSEEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---------CCEEEEccCCHHHCEEEEEEEEeCCceEE
Confidence            45678899999999999976 799999999888766654432         46899999999999999999999999999


Q ss_pred             EEEEEEEeeeecCC
Q psy16652        362 KEIELFDRETQTGD  375 (384)
Q Consensus       362 ~~~~l~v~~~~~~~  375 (384)
                      ..+.|.|.+.++.+
T Consensus        82 ~~~~l~V~~~~~s~   95 (99)
T 2cr3_A           82 TYFSVNVSDALPSG   95 (99)
T ss_dssp             EEEEECBCSCCSCC
T ss_pred             EEEEEEEecCCCCc
Confidence            99999998877654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.53  E-value=5.6e-14  Score=96.01  Aligned_cols=85  Identities=20%  Similarity=0.328  Sum_probs=69.2

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      ++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....              ...|.|.+++.+|+|.|+|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~   68 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KKLYMVPYVDLEHQGTYWCH   68 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC--------------SSEEEESSCCGGGCEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC--------------CCeEEECCCCHHhCEEEEEE
Confidence            3455566666778999999999999999999999999998875442              45799999999999999999


Q ss_pred             EEeCCcceE-EEEEEEEeee
Q psy16652        353 AANKYGSAQ-KEIELFDRET  371 (384)
Q Consensus       353 a~n~~g~~~-~~~~l~v~~~  371 (384)
                      |.|..|... ..+.|.|.+.
T Consensus        69 a~n~~g~~~s~~~~l~V~~~   88 (91)
T 3bfo_A           69 VYNDRDSQDSKKVEIIIDEL   88 (91)
T ss_dssp             EECSSCEEECCCEEEEEC--
T ss_pred             EEcCCCCEEeeeEEEEEehh
Confidence            999999765 4577777543

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.53  E-value=4.5e-13  Score=106.38  Aligned_cols=177  Identities=17%  Similarity=0.158  Sum_probs=112.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...+....+.+|++|+|.|.+.+.....+.||+.........+............+||.+..+.....+.|.|.+++.
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   84 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   84 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence            45666777889999999999999776556899999765432232322111111234789988876677889999999999


Q ss_pred             CCCeeEEEEEEEcc--Cc--ceeeeEEEEEecCCccccCCCceEEee--cCceEEEEEEecccCCC-eEEEEeCCCcccc
Q psy16652        154 TDAGIYKCEVIISL--NN--KVSAEVELIVRRPPIISDNSTRSVIVS--EGQTVYLYCYANGFPAP-TISWRRDNSAALS  226 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~--~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~  226 (384)
                      +|+|.|.|.+.+..  ..  .......|.|.......   .+.+.+.  ..+.++|.|.+.++.+. ++.+.+.      
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~---~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v~~~~~------  155 (210)
T 2eys_A           85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKD------  155 (210)
T ss_dssp             GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSC---CCEEEEECCCSSSSCEEEEEESCCTTCCCCCCSS------
T ss_pred             ccCceEEEEEEccCCCcccceECCCEEEEEECCCCCC---CCeEEecCCCCCCceEEEEcccccCCcEeccccC------
Confidence            99999999997421  11  12233567665322100   1111111  12378899999885443 4422111      


Q ss_pred             cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       227 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ..........|.+..+...+.|.|.|.+.+..+
T Consensus       156 ~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~  188 (210)
T 2eys_A          156 SDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA  188 (210)
T ss_dssp             TTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred             cceEccCchhcchhcccccccchhhccCCCceE
Confidence            111112345788888888899999998877543

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=6.7e-14  Score=98.07  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=71.6

Q ss_pred             EEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC--ceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        276 ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ--HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       276 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      +...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....  ++.+...     .....|.|.+++.+|+|.|+|.|
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a   83 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE-----GKKHILIIEGATKADAAEYSVMT   83 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEE-----TTEEEEEEEEECTTTCSEEEEEE
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEc-----CCEEEEEECCCCcccCEEEEEEE
Confidence            445566677889999999999988 779999999999998776  4444421     12467999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeeecCC
Q psy16652        354 ANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      .|    ...++.|.|.++|.++
T Consensus        84 ~n----~~~~~~l~V~~~p~p~  101 (103)
T 1x44_A           84 TG----GQSSAKLSVDLKSGPS  101 (103)
T ss_dssp             TT----EEEEEEEEEECCCSCC
T ss_pred             CC----CcEEEEEEEeCCCCCC
Confidence            88    4667888888877644

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=99.65  Aligned_cols=93  Identities=14%  Similarity=0.236  Sum_probs=73.4

Q ss_pred             cCeEEecCCC---cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPR---QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+...+..   ..+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+...     .....|.|.+++.+|+|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y   80 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD-----GRKHRLILPEAKVQDSGEF   80 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEE-----TTEEEEEESSCCTTTCEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeC-----CCEEEEEECCCChhhCEEE
Confidence            4555555555   577899999999999999988 999999999987777655431     1346799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        350 ACKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       350 ~C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      +|.|.|..+    .+.|.|.++|.+|
T Consensus        81 ~C~a~n~~~----~~~l~V~~~P~pp  102 (104)
T 2e6p_A           81 ECRTEGVSA----FFGVTVQDPSGPS  102 (104)
T ss_dssp             EEECSSCCC----CEEEEEECCCCSS
T ss_pred             EEEECCceE----EEEEEEcCCCCCc
Confidence            999999854    6677787776554

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.9e-14  Score=98.83  Aligned_cols=93  Identities=22%  Similarity=0.318  Sum_probs=75.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....++.+....     ....|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEG-----TMAMLVIRGASLKDAGEYTCE   81 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEET-----TEEEEEESSCCTTTCSEEEEE
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECC-----CEEEEEECCCCcccCEEEEEE
Confidence            566666677788899999999999998 88899999999999877776655311     245799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeeecCC
Q psy16652        353 AANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      |.|    ...++.|.|.++|..+
T Consensus        82 a~n----~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           82 VEA----SKSTASLHVEEKASGP  100 (103)
T ss_dssp             CSS----CEEEEEEEECCCSSSS
T ss_pred             Ecc----CCcEEEEEEeCCCCCC
Confidence            999    3677888888877554

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.51  E-value=3.2e-13  Score=105.40  Aligned_cols=149  Identities=13%  Similarity=0.150  Sum_probs=97.6

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..+..+.+.+|++|+|.|.+.......+.|||.........+............+|+.+..+.....+.|.|.+++.+
T Consensus         3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~   82 (200)
T 3rgv_A            3 VTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEI   82 (200)
T ss_dssp             EECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred             cEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCc
Confidence            45556777899999999999998755568999997644333333333333333456889888666677889999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE--eecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI--VSEGQTVYLYCYANG-FPAPTISWRRDNSAALS  226 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~  226 (384)
                      |+|.|.|.+........-....|.|......   +.+.+.  ......++|.|.+.+ +|..++.|.+++..+..
T Consensus        83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~---~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~  154 (200)
T 3rgv_A           83 DSAVYYCAANSGTYQRFGTGTKLQVVPNIQN---PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT  154 (200)
T ss_dssp             TCEEEEEEEESSSCCCCCCCEEEEEECCCSS---CCCEEEEEEESSSSSCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred             cCCCEEEEeccCcccccCcCEEEEEeCCCCC---CCCeEEEccCCCCCceEEEEcccccCCeEeEeccCCcEEee
Confidence            9999999986321112233456666543110   011111  112234789999987 45347999999876654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.4e-14  Score=99.35  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEecc---CCCeEEEEECCE-EecC--CCceeeeeeec-cCccccceEEEeecCCCCC
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAY---PPPAIVWIKDGV-QIMN--NQHYSVSHFAT-SDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~  346 (384)
                      +.+...|....+.+|+.++|.|.+.|.   |.|.|.|++++. .+..  ..++.+..... ........|.|.++..+|+
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   92 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR   92 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence            344556677889999999999999875   788999999752 2221  23333332111 1112357899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        347 GQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       347 G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      |.|+|.|.|..|..+..+.|.|.++
T Consensus        93 G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           93 GYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             SCEEEEEECSSCEEEEEECCEEECC
T ss_pred             EEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999999999875

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.49  E-value=2.3e-12  Score=102.19  Aligned_cols=143  Identities=16%  Similarity=0.194  Sum_probs=101.6

Q ss_pred             EeecCceEEEEEEec-ccC---CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEE
Q psy16652        194 IVSEGQTVYLYCYAN-GFP---APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAV  268 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~-~~~---~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l  268 (384)
                      .+..|+.++|.|.+. +.|   +..+.|+|++..+..      ....|.+..+...++|.|+|.+.+..+... +..+.+
T Consensus        13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtV   86 (304)
T 3shs_A           13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL   86 (304)
T ss_dssp             SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEE
T ss_pred             cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEE
Confidence            367899999999985 455   347999999866432      234789999999999999999999766542 222333


Q ss_pred             EEEecCeEEecC-CCcccccCCcEEEEEEE--ec-cC-----CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEe
Q psy16652        269 EVEFAPVITINR-PRQGQALQYDAILECHV--EA-YP-----PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       269 ~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~--~~-~p-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      .....+.+.+.. .......+..+.|.+.+  .| .|     ..++.|++++..+..                ...|++.
T Consensus        87 T~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg----------------Aq~lT~s  150 (304)
T 3shs_A           87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT----------------TQDITIQ  150 (304)
T ss_dssp             ECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES----------------SSEEEEC
T ss_pred             eccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC----------------cccccee
Confidence            332233333322 22334556788898887  54 34     358999999987742                3356777


Q ss_pred             ecCCCCCeEEEEEEEeCCc
Q psy16652        340 TIERRQFGQYACKAANKYG  358 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .....++|.|+|.+.|..+
T Consensus       151 S~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          151 EFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             SCCGGGCEEEEEEEESSSG
T ss_pred             eEEecCCeEEEEEEEcCCC
Confidence            7888899999999999876

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.49  E-value=4e-13  Score=104.02  Aligned_cols=163  Identities=12%  Similarity=0.150  Sum_probs=104.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+.+|+++.|+|.+....+..+.|...-......  .......+.+.+++ +|.+.|.|.+.... ....+.+.|.
T Consensus         9 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~--~g~~~~~~~ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l~   84 (196)
T 3bn3_B            9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQ--RGLRWLARQLVDIR-EPETQPVCFFRCAR-RTLQARGLIR   84 (196)
T ss_dssp             SSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEE--EETTEEEEEEEEEC-SSEECCEEEEEETT-EEEEEECEEE
T ss_pred             CCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEc--cccCceEEEEEEEc-cCCCceEEEEECCC-CceEEEEEEE
Confidence            45567999999999999964323367775421111100  00112248888988 77777999987643 4457788899


Q ss_pred             EEecCe-EEecCCCcccccCCcEEEEEEEec-cCCCe--EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        270 VEFAPV-ITINRPRQGQALQYDAILECHVEA-YPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       270 v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |...|. +.+.+....+.+|+.++|.|.+.+ .|...  |.|+++++++.... +.  ...........++++.....+|
T Consensus        85 Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~-~~--~~~~~~~~~t~~~~~~~~r~D~  161 (196)
T 3bn3_B           85 TFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS-FA--GEPPRARGAVLTATVLARREDH  161 (196)
T ss_dssp             EEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEE-CT--TSCTTCCCEEEEEEEECCGGGT
T ss_pred             EecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccc-cc--cccccccceeEEEEEeeeeccC
Confidence            988775 334444455899999999999987 45444  89999999885332 10  0000000012445555555555


Q ss_pred             CeEEEEEEEeCCcc
Q psy16652        346 FGQYACKAANKYGS  359 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~  359 (384)
                      ...|+|.|.|..+.
T Consensus       162 g~~~sC~A~l~l~~  175 (196)
T 3bn3_B          162 GANFSCRAELDLRP  175 (196)
T ss_dssp             TCEEEEEEEEECGG
T ss_pred             CCeEEEEEEccCCc
Confidence            55999999998873

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=1.1e-12  Score=105.99  Aligned_cols=155  Identities=18%  Similarity=0.268  Sum_probs=96.8

Q ss_pred             CceEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc------------ccCceeEe------ccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL------------STGGSIYR------GNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~------------~~~~~~~~------~~~l~i~~~~~~d~  247 (384)
                      +..+.+.+|++++|.|.+.+.+  ...+.|++...  ...            ...+....      ...|.|.+++.+|+
T Consensus         8 p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   87 (229)
T 1hxm_A            8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE   87 (229)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHC
Confidence            4567789999999999997643  35799998532  111            01112111      13799999999999


Q ss_pred             eEEEEEEEeCCC------C-ceeeEEEEEEEe------cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCE
Q psy16652        248 GTYYCVAQNGVG------R-GMKRNIAVEVEF------APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGV  312 (384)
Q Consensus       248 G~Y~C~~~~~~~------~-~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~  312 (384)
                      |.|.|.+.+...      . .......|.|..      +|.+.+.       . ..+.|.|.+.+. |.+ .+.|.++ .
T Consensus        88 g~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~-------~-~~~~L~C~~~g~~P~~i~v~W~~~-~  158 (229)
T 1hxm_A           88 GSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM-------K-NGTNVACLVKEFYPKDIRINLVSS-K  158 (229)
T ss_dssp             EEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE-------E-ETTEEEEEEESCBSSCCEEEEECS-S
T ss_pred             eEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc-------C-CCCeEEEEEEEEeCCCEEEEEecC-C
Confidence            999999987531      1 111234566653      3433321       1 124899999884 554 8999999 7


Q ss_pred             EecCCCceeeeeeeccCccccceEEEeecC-CCCCeEEEEEEEeCCcce
Q psy16652        313 QIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQYACKAANKYGSA  360 (384)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~  360 (384)
                      .+...... ...  .    .++.+.+.... .+|.|.|+|.|.|..+..
T Consensus       159 ~~~~~~~~-~~~--~----~dg~y~~~~~~~~~~~~~ytC~V~h~~~~~  200 (229)
T 1hxm_A          159 KITEFDPA-IVI--S----PSGKYNAVKLGKYEDSNSVTCSVQHDNKTV  200 (229)
T ss_dssp             EEEECCCE-EEE--C----TTSSEEEEEEEEETTTTTCEEEEEETTEEE
T ss_pred             EEecCccc-eEE--C----CCCcEEEEECcccCCCCcEEEEEEeCCCCc
Confidence            66533211 111  1    23344443333 367899999999997543

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.49  E-value=1.3e-13  Score=109.22  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=90.6

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..+..+.+.+|++|+|.|.+.+.....+.|++.........+............+|+.+..+.......|.|.+++.+
T Consensus         3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   82 (203)
T 2bnu_A            3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (203)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcc
Confidence            45567778899999999999987655558999997654222222222222222356889887666677889999999999


Q ss_pred             CCeeEEEEEEEcc---C-cceeeeEEEEEecCCccccCCCceEEe--ecCceEEEEEEecc-cCCCeE
Q psy16652        155 DAGIYKCEVIISL---N-NKVSAEVELIVRRPPIISDNSTRSVIV--SEGQTVYLYCYANG-FPAPTI  215 (384)
Q Consensus       155 d~G~Y~C~~~~~~---~-~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~~~~~v  215 (384)
                      |+|.|.|.+.+..   . ........|.|.......   .+.+.+  ...+.++|.|.+.+ +|.+.+
T Consensus        83 Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~---~P~V~~~~~~~~~~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A           83 DSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNP---DPAVYQLRRSKSSDKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             GCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSC---CCEEEEECCSSSSSCEEEEEESCCTTCCC
T ss_pred             cCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCC---CCeEEecCCCCCCcEEEEEccccccCccc
Confidence            9999999997532   1 112233566665432100   111111  12347899999988 788877

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.49  E-value=5.4e-13  Score=111.02  Aligned_cols=170  Identities=12%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc-cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +....+.+|+++.|+|.+....+..+.|...-..... ..+.  ....+.+.+++.+  |.|+|.+... +....+.+.|
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~--~~~~~~l~~v~~~--~~y~C~~~~~-~~~~~~~v~l   80 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN--NRKVYELSNVQED--SQPMCYSNCP-DGQSTAKTFL   80 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCS--SEEEEEEESCCSC--CCCEEEEECS-SCEEEEECEE
T ss_pred             CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCC--ceEEEEEEecccC--CeEEEEEEcC-CccEEEEEEE
Confidence            3456799999999999996433335888642111111 1111  1125788888753  4699999754 3445777888


Q ss_pred             EEEecCeE-EecCCCcccccCCcEEEEEEEecc-CCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        269 EVEFAPVI-TINRPRQGQALQYDAILECHVEAY-PPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       269 ~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      .|..+|.- .+......+.+|+.++|.|.+.+. |.+  +|.|+++++++......        ......+|.+...+.+
T Consensus        81 ~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--------~~~~~~~l~~~~~~~D  152 (291)
T 1mq8_A           81 TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDH  152 (291)
T ss_dssp             EECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--------BTTEEEEEECCCSSSC
T ss_pred             EEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--------CCCceEEEEeeeeecc
Confidence            88887753 333334558899999999999874 444  59999999888533210        0112345666666666


Q ss_pred             CCeEEEEEEEeCCcc--------eEEEEEEEEeeee
Q psy16652        345 QFGQYACKAANKYGS--------AQKEIELFDRETQ  372 (384)
Q Consensus       345 d~G~Y~C~a~n~~g~--------~~~~~~l~v~~~~  372 (384)
                      |.+.|+|.|.|..+.        .++...|.|..+|
T Consensus       153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P  188 (291)
T 1mq8_A          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP  188 (291)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEECCCCEECBC----
T ss_pred             CCceEEEEEEecCCccCCccccccccceEEEEEecC
Confidence            777999999998663        2344566666664

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=97.69  Aligned_cols=100  Identities=15%  Similarity=0.252  Sum_probs=80.3

Q ss_pred             eeEEEEEEEec-CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeec
Q psy16652        263 KRNIAVEVEFA-PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       263 ~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      +..+.|.|... |.+...+....+.+|+.+.|.|.+.+.  |.+.|++++..+..+.++.+....     ....|.|.++
T Consensus         8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~I~~v   80 (113)
T 2edh_A            8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDG-----ARCELQIRGL   80 (113)
T ss_dssp             CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEET-----TEEEEEECSC
T ss_pred             cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECC-----CEEEEEECCC
Confidence            44556667744 477777778889999999999999774  789999999999877777665311     2357999999


Q ss_pred             CCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        342 ERRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +.+|+|.|+|.|    |....++.|.|.++|.
T Consensus        81 ~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           81 VAEDAGEYLCMC----GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             CSTTCEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred             ChhhCEEEEEEe----CCCCEEEEEEEeCCCC
Confidence            999999999999    7788889999987764

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.23  E-value=2.6e-15  Score=116.21  Aligned_cols=143  Identities=15%  Similarity=0.121  Sum_probs=90.4

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..+..+.+.+|++|+|.|.+.+.....+.|+|.........+............+|+.+..+.......|.|.+++.+
T Consensus         3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~   82 (185)
T 3c6l_A            3 VRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPG   82 (185)
Confidence            34456677789999999999987655458999997643222222222111112245677776544556778999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecC-----CccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcc
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRP-----PIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAA  224 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~  224 (384)
                      |+|.|.|.+... .........|.|...     |.+....+      ..+.++|.|.+.+ +|.++|.|..+....
T Consensus        83 DsG~Y~C~~~~~-~~~fg~gT~L~V~~~~~~~~P~V~~~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~~  151 (185)
T 3c6l_A           83 DSATYFCAASDN-RIFFGDGTQLVVKPNIQNPEPAVYQLKD------PRSQDSTLCLFTDFDSQINVPKTMESGTF  151 (185)
Confidence            999999998641 111122234555422     22221111      1227999999987 788899998766544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.48  E-value=1.4e-13  Score=94.87  Aligned_cols=82  Identities=23%  Similarity=0.287  Sum_probs=69.2

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      ....+.+|+.+.|.|.+.+  .|.+.|+++|..+....++.+.         ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus         9 ~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   77 (95)
T 4hwu_A            9 EAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI---------GEYLQIKGATPRDSGLYACTAARTVDSE   77 (95)
T ss_dssp             EEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE---------TTEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe---------CCEEEECcCCcccCEEEEEEEccCCCcE
Confidence            3455789999999999987  5799999999999777665542         5689999999999999999999999999


Q ss_pred             EEEEEEEEeeeec
Q psy16652        361 QKEIELFDRETQT  373 (384)
Q Consensus       361 ~~~~~l~v~~~~~  373 (384)
                      ...+.|.|.+++.
T Consensus        78 ~~~~~l~V~~~~~   90 (95)
T 4hwu_A           78 TWIFMVNVTDAAE   90 (95)
T ss_dssp             EEEEEEEECCC--
T ss_pred             EEEEEEEEeCCcc
Confidence            9999999987653

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.48  E-value=8.5e-12  Score=97.46  Aligned_cols=179  Identities=18%  Similarity=0.288  Sum_probs=114.6

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +...-++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+.......    ...+|+.+..+.......|.+++
T Consensus         6 eSG~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~s   85 (254)
T 4f9p_D            6 QSGAEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSS   85 (254)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEcc
Confidence            34455689999999999998854  457999996644222211 122122221    23579999998888889999999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecC----Cc----------------cccCCCceEEeecCceEEEEEEeccc
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PI----------------ISDNSTRSVIVSEGQTVYLYCYANGF  210 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~----------------~~~~~~~~~~~~~g~~~~l~C~~~~~  210 (384)
                      ++.+|++.|.|.-. ......-.-..|+|...    |.                ....++..+.+.+|+.++|.|.+...
T Consensus        86 L~~eDTAvYYCAr~-~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~  164 (254)
T 4f9p_D           86 LTSDDSAVYFCARS-DYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQS  164 (254)
T ss_dssp             CCGGGCEEEECEES-SSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSC
T ss_pred             CCCCCCEEEEEEec-CCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCc
Confidence            99999999999642 22222333445555321    10                11123556678999999999998654


Q ss_pred             CCCeEEEEeCC--Cccc------------ccCceeEe----ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        211 PAPTISWRRDN--SAAL------------STGGSIYR----GNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       211 ~~~~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      -...+.||+..  +...            ...++...    ..+|+|..++.+|.+.|.|.-.+.
T Consensus       165 ~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~~  229 (254)
T 4f9p_D          165 ISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS  229 (254)
T ss_dssp             CTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECSS
T ss_pred             ccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecCC
Confidence            34458898742  2110            00111111    237999999999999999976543

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.47  E-value=5.3e-13  Score=91.10  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=69.2

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.|...+.+..+.+|++++|.|.+.+ +.+.+.|++++...              ..+.++.+..  .....+|.|.
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i--------------~~~~~~~i~~--~g~~~~L~I~   65 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPL--------------AASPDCEIIE--DGKKHILILH   65 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEEC--------------CCBTTEEEEE--ETTEEEEEEC
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEEC--------------cCCCCEEEEE--ECCEEEEEEC
Confidence            46788888899999999999999999976 44689999987542              2345666655  3456789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      +++.+|+|.|+|.+.|     ......|.|.+
T Consensus        66 ~v~~~D~G~Y~C~a~n-----~~~sa~L~V~~   92 (93)
T 1waa_A           66 NCQLGMTGEVSFQAAN-----TKSAANLKVKE   92 (93)
T ss_dssp             SCCGGGCEEEEEEETT-----EEEEEEEEEEC
T ss_pred             CCChhhCEEEEEEECC-----CcEEEEEEEEc
Confidence            9999999999999853     23455666653

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.47  E-value=4.2e-13  Score=93.40  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             cCeEEecCCC-cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPR-QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|+++|..+..+.++.+....     ....|.|.+++.+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKG-----CQRILFINNCQMTDDSEYYV   80 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEET-----TEEEEEEEEECTTTCCEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecC-----CEEEEEEcCCCcCcCEEEEE
Confidence            4566555554 4677999999999998 688999999999999877776654311     23479999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeee
Q psy16652        352 KAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .|    |....++.|.|.++|
T Consensus        81 ~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           81 TA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EE----TTEEEEEEEEECCSC
T ss_pred             EE----CCceEEEEEEEecCC
Confidence            99    778888999998765

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.47  E-value=2.9e-13  Score=105.62  Aligned_cols=149  Identities=17%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +...+..+.+.+|++|+|.|.+.+.....+.|+|.........+............+|+.+..+.......|.|.+++.+
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~   82 (199)
T 3gsn_A            3 VEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPE   82 (199)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGG
T ss_pred             EEECCCEEEEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCccc
Confidence            45567778899999999999997755568999997644333333332222222345788777656778899999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEee--cCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS--EGQTVYLYCYANG-FPAPTISWRRDNSAALS  226 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~  226 (384)
                      |+|.|.|.+........-....|.|......   +.+.+...  ....++|.|.+.+ +|..++.|.+++..+..
T Consensus        83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~---~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~~  154 (199)
T 3gsn_A           83 DSATYLCARNTGNQFYFGTGTSLTVIPNIQN---PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYIT  154 (199)
T ss_dssp             GCEEEEEEEESSSCEEECSCEEEEEECCCSS---CCCEEEECCCSSSSSSCCEEEETCCTTCCSSCSSCSSEEEC
T ss_pred             CCccEEEEEcccccccCCCCEEEEEecccCC---CCCEEEEcccCCCCceEEEEeecccCCeEeEeccCCCeEec
Confidence            9999999985321112223356666542100   01111111  1123689999988 45347899998876543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9e-14  Score=97.37  Aligned_cols=93  Identities=13%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..+.++.+....     ...+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A            9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG-----RKYILVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEET-----TEEEEEECSCCTTTCSCEEEE
T ss_pred             CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcC-----CEEEEEECCCCHHHCEEEEEE
Confidence            345455667788999999999999987754 89999999999887777654311     245799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeeecCC
Q psy16652        353 AANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      |.    ....+..|.|.++|..+
T Consensus        84 a~----~~~~~a~L~V~~~p~~~  102 (104)
T 2eny_A           84 VR----GLTSKASLIVRERSGPS  102 (104)
T ss_dssp             ET----TEEEEECEEEECCCSSC
T ss_pred             EC----CeeEEEEEEEeCCCcCC
Confidence            84    45678889998887554

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.47  E-value=2.5e-13  Score=96.09  Aligned_cols=97  Identities=13%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCE-EecC-------CCceeeeeeeccCccccceEEEeecC
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV-QIMN-------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      ..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++. .+..       ..++.+....    .....|.|.+++
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~   79 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS----WHELSISVSDVS   79 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEES----SSEEEEEECSCC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecC----CCcEEEEECCCC
Confidence            344555556777888999999999999999999999999875 2221       2244332211    135689999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        343 RRQFGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      .+|+|.|+|.|.| .|.....+.|.|.++|
T Consensus        80 ~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           80 LSDEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             GGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             hhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            9999999999999 8999999999988754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.46  E-value=7.3e-13  Score=93.68  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=76.3

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ..|.+...+....+.+|++++|.|.+.+.+.+.+.|++++..      .+.........+.|+.+... .....+|.|.+
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~------~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~   77 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRA-SWHELSISVSD   77 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCC------EEEETTEECSCCTTEEEEEE-SSSEEEEEECS
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCc------eEEEcCCcccccCcEEEeec-CCCcEEEEECC
Confidence            456677778889999999999999999888889999986542      11122222334557776543 33577899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPP  183 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  183 (384)
                      ++.+|+|.|+|.+.+  .+..+..+.|.|..+|
T Consensus        78 v~~~D~G~Y~C~~~n--~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           78 VSLSDEGQYTCSLFT--MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             CCGGGCEEEEEEECS--SSCEEEEEEEEEECCC
T ss_pred             CChhHCeEEEEEEEc--CCCcEEEEEEEEEcCC
Confidence            999999999999986  5667777888887654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.46  E-value=7.7e-13  Score=94.68  Aligned_cols=102  Identities=21%  Similarity=0.348  Sum_probs=79.2

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++....             ....++.+..+ ..+..+|.|
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~-------------~~~~~~~~~~~-~~~~~~L~I   77 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQ-------------FNTDRISLYQD-NTGRVTLLI   77 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECC-------------CCBTTEEEEEC-TTCEEEEEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECc-------------CCCCeEEEEeC-CCCeEEEEE
Confidence            3467888888999999999999999999988888999999775421             12355655543 234568999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII  185 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  185 (384)
                      .+++.+|+|.|+|.+.|.. +..+..+.|.|..+|..
T Consensus        78 ~~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           78 KDVNKKDAGWYTVSAVNEA-GVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEECGGGCEEEEEEEEETT-EEEEEEEEEEEECCSCC
T ss_pred             CCCCcccCEEEEEEEEcCC-CeEEEEEEEEEeCCCCC
Confidence            9999999999999998654 45677888888876643

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=99.46  E-value=2.3e-12  Score=101.56  Aligned_cols=171  Identities=14%  Similarity=0.173  Sum_probs=102.3

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      +....+.+|++|+|.|.+.+.....+.|||.........+....... ....+|+.+..+.......|.|.+++.+|+|.
T Consensus         6 p~~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~   84 (200)
T 2nw2_A            6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDG-LEEKGRFSSFLSRSKGYSYLLLKELQMKDSAS   84 (200)
T ss_dssp             CSEEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSE-EEEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCeEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCC-cccCCceEEEecCCCCEEEEEECccCcccCCc
Confidence            66677899999999999876555689999987543333333222222 22268898876667778999999999999999


Q ss_pred             EEEEEEEc--cC-cceeeeEEEEEecCCccccCCCceEEe--ecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeE
Q psy16652        159 YKCEVIIS--LN-NKVSAEVELIVRRPPIISDNSTRSVIV--SEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIY  232 (384)
Q Consensus       159 Y~C~~~~~--~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~  232 (384)
                      |.|.+...  .. ........|.|...+...   .+.+.+  .....++|.|.+.+..+. ++   .+...   ......
T Consensus        85 Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~~---~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v---~~~~~---~~~~~t  155 (200)
T 2nw2_A           85 YLCAVQASGGSYIPTFGRGTSLIVHPYIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNV---SQSKD---SDVYIT  155 (200)
T ss_dssp             EEEEEC---CCCCCEECCCEEEEEECCCSSC---CCEEEEEEECC--CCEEEEEESCCTTCCC---CCCSS---SSEEEC
T ss_pred             EEEEEEcCCcceeeeeCCCEEEEEecCcccC---CCeEEEcCCCCCCceEEEEeecccCCcEe---ecccc---cceEec
Confidence            99998641  11 112234566665421100   111111  123378999999885443 33   11111   111111


Q ss_pred             eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        233 RGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      ....|.+......+.|.+.|...+...
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (200)
T 2nw2_A          156 DKCVLDMRSMDFKSNSAVAWSNKSDFA  182 (200)
T ss_dssp             CCEEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred             CchhhhhhhcccccccceeccCCCceE
Confidence            334566666666677888887766443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.46  E-value=3.3e-13  Score=97.78  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             cccccCCcEEEEEEEecc--CCCeEEEEECCEEecC-----CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652        283 QGQALQYDAILECHVEAY--PPPAIVWIKDGVQIMN-----NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                      ..+.+|+.+.|.|.+.|.  |.+.+.|++++..+..     ..+....  ........+.|.|.+++.+|+|.|+|.|.|
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS--GSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE--ETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc--CCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            367899999999999984  4568999998874421     1111110  000011356799999999999999999999


Q ss_pred             CCcceEEEEEEEEeeeecC
Q psy16652        356 KYGSAQKEIELFDRETQTG  374 (384)
Q Consensus       356 ~~g~~~~~~~l~v~~~~~~  374 (384)
                      ..|....++.|.|.++|..
T Consensus        96 ~~g~~~~~~~l~V~~~p~i  114 (122)
T 3s35_X           96 GLMTKKNSTFVRVHEKPFV  114 (122)
T ss_dssp             SSCEEEEEEEEEEEEEECC
T ss_pred             CCCceEEEEEEEEeccCeE
Confidence            9999999999999988753

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=93.02  Aligned_cols=74  Identities=15%  Similarity=0.303  Sum_probs=59.4

Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE  363 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  363 (384)
                      .+.+|+.+.|.|.+.+ |.+.+.|++||.++..+.++.+....     ....|.|.+++.+|+|.|+|.|.|.    +.+
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~   86 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEG-----PHRRLVLPATQPSDGGEFQCVAGDE----CAY   86 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEET-----TEEEEEESSCCGGGCSEEEEECSSC----EEE
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecC-----CeEEEEeCCCChhhcEEEEEEEcce----EEE
Confidence            3467999999999966 88899999999999888887765421     2457999999999999999999665    445


Q ss_pred             EEEE
Q psy16652        364 IELF  367 (384)
Q Consensus       364 ~~l~  367 (384)
                      +.|.
T Consensus        87 ~~lt   90 (91)
T 2lvc_A           87 FTVT   90 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=4.6e-13  Score=93.06  Aligned_cols=96  Identities=19%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++...              ....++.+... ......|.|.
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~--------------~~~~~~~~~~~-~~~~~~L~i~   67 (99)
T 1g1c_A            3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI--------------ERSDRIYWYWP-EDNVCELVIR   67 (99)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEEEEEE-ETTEEEEEEC
T ss_pred             CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEEC--------------CCCCCEEEEEc-CCCEEEEEEC
Confidence            34677888888889999999999999998888899999977542              11233332221 2346689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      +++.+|+|.|+|.+.|.. +.....+.|.|..
T Consensus        68 ~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~   98 (99)
T 1g1c_A           68 DVTGEDSASIMVKAINIA-GETSSHAFLLVQA   98 (99)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEEC
T ss_pred             CCCcCCCEEEEEEEEECC-CcEEEEEEEEEec
Confidence            999999999999998654 4455666777653

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.45  E-value=5.3e-13  Score=93.48  Aligned_cols=96  Identities=18%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++...              ....++.+..  ......|.|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~--------------~~~~~~~~~~--~~~~~~L~i~   69 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL--------------QESSKIHYTN--TSGVLTLEIL   69 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEEEEE--ETTEEEEEEC
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEEC--------------CCCCCEEEEE--CCCEEEEEEc
Confidence            35678888888889999999999999999888899999977542              2234555544  3456689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      +++.+|+|.|+|.+.|.. +..+..+.|.|...
T Consensus        70 ~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           70 DCHTDDSGTYRAVCTNYK-GEASDYATLDVTGG  101 (103)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEECC
T ss_pred             CCCcccCEEEEEEEEeCC-CcEEEEEEEEEECC
Confidence            999999999999998654 44566777777643

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=99.12  Aligned_cols=95  Identities=25%  Similarity=0.324  Sum_probs=69.0

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCc---eeeeeeeccCccccceEEE-----eecC
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH---YSVSHFATSDEFSDTSLRV-----ITIE  342 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i-----~~~~  342 (384)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   ..... .     .+..+.+     .+++
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~i~~~~v~   80 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML-L-----PSGSLFFLRIVHGRKS   80 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEE-C-----TTSCEEESSCCCBTTB
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEE-e-----cCCcEEEEEEEeCCCC
Confidence            4577887777778889999999999999999999999999998865431   11111 0     1223333     3557


Q ss_pred             CCCCeEEEEEEEeCCcceEEE-EEEEEeee
Q psy16652        343 RRQFGQYACKAANKYGSAQKE-IELFDRET  371 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~  371 (384)
                      .+|+|.|+|.|.|..|...+. +.|.+..+
T Consensus        81 ~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           81 RPDEGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             CSSCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             cCcCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            899999999999999987643 56655443

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.45  E-value=4.1e-13  Score=93.08  Aligned_cols=79  Identities=16%  Similarity=0.283  Sum_probs=64.5

Q ss_pred             CCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ....+.+|+.+.|.|.+. +.|.+.+.|++++........  .        .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--M--------DFNGILTIRNVQPSDAGTYVCTGSNMFAM   87 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--E--------EETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee--e--------cCCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence            445688999999999998 689999999998644332221  1        13568999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                      ...++.|.|.
T Consensus        88 ~~~~~~l~V~   97 (98)
T 1gl4_B           88 DQGTATLHVQ   97 (98)
T ss_dssp             EEEEEEEEEC
T ss_pred             cccEEEEEEe
Confidence            9999998875

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=8.3e-14  Score=99.73  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=77.8

Q ss_pred             EEEEEecC-eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        267 AVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       267 ~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      .|.|..+| .+...+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+..+.++.+...    ......|.|.+++.+|
T Consensus         6 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~----~~~~~~L~I~~v~~~D   81 (115)
T 2cr6_A            6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ----PGGYHVLTLRQLALKD   81 (115)
T ss_dssp             CCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCB----TTTBCCBEECSCCTTT
T ss_pred             EEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEc----CCCEEEEEEcCCChhh
Confidence            34555555 555566777889999999999999999999999999999987776554311    1134679999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        346 FGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      +|.|+|.    .|....++.|.|.++|.
T Consensus        82 ~G~Y~C~----~g~~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           82 SGTIYFE----AGDQRASAALRVTEKPS  105 (115)
T ss_dssp             CEEEEEE----ETTEECCEEEEEECCSS
T ss_pred             CEEEEEE----ECCeeEEEEEEEECCCc
Confidence            9999999    46777778888887754

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.45  E-value=6.4e-13  Score=93.99  Aligned_cols=99  Identities=27%  Similarity=0.453  Sum_probs=65.3

Q ss_pred             EEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEE
Q psy16652        175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYC  252 (384)
Q Consensus       175 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C  252 (384)
                      +.|.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........  .+..|.|.+++.+|+|.|+|
T Consensus         3 ~~v~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   81 (108)
T 3kvq_A            3 LTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC   81 (108)
T ss_dssp             --------CCCBS-CCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred             eeECccCCCceec-CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence            3455556666653 35667889999999999999999999999999987765544433  34689999999999999999


Q ss_pred             EEEeCCCCceeeEEEEEEEecCe
Q psy16652        253 VAQNGVGRGMKRNIAVEVEFAPV  275 (384)
Q Consensus       253 ~~~~~~~~~~~~~~~l~v~~~p~  275 (384)
                      .+.|..|.. ...+.|.|..+|.
T Consensus        82 ~a~n~~g~~-~~~~~l~V~~~~~  103 (108)
T 3kvq_A           82 QACSVLGCA-KVEAFFIIEGAQE  103 (108)
T ss_dssp             EEC----CE-EEEEEEEEEC---
T ss_pred             EEEeCCCce-EEEEEEEEeCCCc
Confidence            999998875 6778888877664

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=99.45  E-value=2e-12  Score=102.46  Aligned_cols=150  Identities=13%  Similarity=0.209  Sum_probs=95.9

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeC-CceEEeeCCCCceEEEEEeecC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD-SRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      .+...+..+.+.+|++|+|.|.+.......+.|||.........+............ +|+.+..+.....+.|.|.+++
T Consensus        11 ~V~Qsp~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq   90 (226)
T 3tjh_C           11 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   90 (226)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSCC
T ss_pred             EEEEeCCEEEEEcCCCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecCC
Confidence            455666777899999999999998755568999997644333333332222222334 8898876667788999999999


Q ss_pred             CCCCeeEEEEEEEcc-Cc--ceeeeEEEEEecCCccccCCCceEE--eecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652        153 ETDAGIYKCEVIISL-NN--KVSAEVELIVRRPPIISDNSTRSVI--VSEGQTVYLYCYANG-FPAPTISWRRDNSAALS  226 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~  226 (384)
                      .+|+|.|.|.+.... ..  ..-....|.|.......   .+.+.  ......++|.|.+.+ +|..++.|.+++..+..
T Consensus        91 ~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~~---~P~V~~~~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~  167 (226)
T 3tjh_C           91 WSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT  167 (226)
T ss_dssp             GGGCEEEEEEEEESSCSSSEEECCCEEEEEECCCSSC---CCEEEEEEECC---CEEEEEESCCTTCCCCCCSCTTEEEC
T ss_pred             cccCCCEEEEEEecCCccccccCCCeEEEEeCCCCCC---CCEEEEcccCCCCeEEEEEcccccCCcEEEeeccCceeec
Confidence            999999999987421 11  12233566665431100   11111  111234789999987 55447999998876544

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.44  E-value=2.6e-12  Score=101.05  Aligned_cols=180  Identities=17%  Similarity=0.306  Sum_probs=106.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.....-...+.||+......+..++........-..+||....  ....++|.|.+++.
T Consensus         3 vlTQsP~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~--Sgt~ftLtIs~lq~   80 (259)
T 4f9l_D            3 VLTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSG--SATGFTLTISSLQP   80 (259)
T ss_dssp             CEEEECSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEEESCCG
T ss_pred             CEEccCCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeec--cCCeEEEEEcccCh
Confidence            3556677778899999999998754434469999976554333333222111111235776655  45678899999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEec----C------Cc-----------cccCCCceEEeecCceEEEEEEecccCC
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRR----P------PI-----------ISDNSTRSVIVSEGQTVYLYCYANGFPA  212 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~------~~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~  212 (384)
                      +|++.|.|..........-.-.+|.+..    +      +.           +.........+.+|.++.|.|.+.|+..
T Consensus        81 eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tf  160 (259)
T 4f9l_D           81 EDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTF  160 (259)
T ss_dssp             GGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCG
T ss_pred             hhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCc
Confidence            9999999986432111011111222211    0      00           0000011234789999999999988653


Q ss_pred             C--eEEEEeCC--Ccc------cccCc-----------eeE-e-----ccEEEEcCCCCCCCeEEEEEEE
Q psy16652        213 P--TISWRRDN--SAA------LSTGG-----------SIY-R-----GNILKIPNITKTDRGTYYCVAQ  255 (384)
Q Consensus       213 ~--~v~W~~~~--~~~------~~~~~-----------~~~-~-----~~~l~i~~~~~~d~G~Y~C~~~  255 (384)
                      .  .+.|.|..  +.+      .....           ... +     .-.|.+.+++.+|...|.|.-.
T Consensus       161 s~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~  230 (259)
T 4f9l_D          161 TRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRE  230 (259)
T ss_dssp             GGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEe
Confidence            3  58888732  211      11110           111 1     1258899999999999999654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.44  E-value=3.6e-13  Score=89.76  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      ..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+              ..+.++.+..  ......|.|.+++.+|+|.|
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y   66 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERL--------------ASQGRVQLEQ--AGARQVLRVQGARSGDAGEY   66 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEEC--------------CCCSSEEEEE--CSSCEEEEESSCSSTTCEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEc--------------cccccEEEee--cCCeEEEEecCCCCcccEEE
Confidence            3456789999999999865 77789999987652              3345666665  44567899999999999999


Q ss_pred             EEEEEEccCcceeeeEEEEEecC
Q psy16652        160 KCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       160 ~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      +|.+     +..+..+.|.|.+|
T Consensus        67 ~C~a-----~n~~~~a~l~V~eP   84 (84)
T 2lu7_A           67 LCDA-----PQDSRIFLVSVEEP   84 (84)
T ss_dssp             EEEC-----TTTCEEEEEEECCC
T ss_pred             EEEE-----CCEEEEEEEEEECC
Confidence            9987     23455667777653

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=7.6e-13  Score=93.89  Aligned_cols=101  Identities=15%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+....+.+|+.++|.|.+.+.+.+.+.|++++.....             ...++.+..+ ..+...|.|
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-------------~~~~~~~~~~-~~~~~~L~i   70 (110)
T 2dm2_A            5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-------------KSDHYTIQRD-LDGTCSLHT   70 (110)
T ss_dssp             CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-------------TCSSEEEEEC-TTCEEEEEE
T ss_pred             CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-------------CCCeEEEEEC-CCcEEEEEE
Confidence            45678888888888999999999999999888889999997765211             1345555543 344568999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI  184 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  184 (384)
                      .+++.+|+|.|+|.+.|.. +..+..+.|.|..++.
T Consensus        71 ~~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           71 TASTLDDDGNYTIMAANPQ-GRISCTGRLMVQAVNS  105 (110)
T ss_dssp             SSCCTTTCSCCEEEEECTT-CCEEECCCEEEECCSC
T ss_pred             CCCChhhCEEEEEEEEECC-CeEEEEEEEEEECCCC
Confidence            9999999999999998655 4456777788876654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.44  E-value=8.1e-13  Score=94.09  Aligned_cols=98  Identities=21%  Similarity=0.301  Sum_probs=71.8

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEecc--CCCeEEEEECCEEecCCCceeeeeeecc---CccccceEEEeecCCCC
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAY--PPPAIVWIKDGVQIMNNQHYSVSHFATS---DEFSDTSLRVITIERRQ  345 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d  345 (384)
                      ..+|.+...+....+..|+.++|.|.+.+.  |.+.+.|++++..+..............   .......|.|.+++.+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            456777777777888999999999999865  4579999999998865432111110000   00114689999999999


Q ss_pred             CeEEEEEEEeCCcc-eEEEEEEEE
Q psy16652        346 FGQYACKAANKYGS-AQKEIELFD  368 (384)
Q Consensus       346 ~G~Y~C~a~n~~g~-~~~~~~l~v  368 (384)
                      +|.|+|.|.|..|. .+..+.|.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999999998 446677765

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.43  E-value=2.6e-13  Score=95.57  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=70.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+....     ....|.|.+++.+|+|.|+|.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~   81 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVG-----RFHKLVIDDVRPEDEGDYTFV   81 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEET-----TEEEEEESSCCTTTCSCEEEE
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeC-----CEEEEEECCCCcCCCEEEEEE
Confidence            5666667777889999999999999998877 9999999999877776654311     245799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEee
Q psy16652        353 AANKYGSAQKEIELFDRE  370 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~  370 (384)
                      |.|..++  .+..|.|..
T Consensus        82 a~n~~~~--~~~~l~V~~   97 (106)
T 2dlt_A           82 PDGYALS--LSAKLNFLE   97 (106)
T ss_dssp             EETSCCC--CCBCEEEEC
T ss_pred             EccCCce--EEEEEEEEE
Confidence            9998444  444455443

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.43  E-value=3.3e-12  Score=97.80  Aligned_cols=160  Identities=13%  Similarity=0.151  Sum_probs=104.8

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ..+.+.|+...|..|+++.|+|...-..+..+.|...-.                    +...  +...+...|.|.+++
T Consensus         3 f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~--------------------~~~~--~~g~~w~~l~l~~vs   60 (192)
T 1zxq_A            3 FEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLN--------------------KILL--DEQAQWKHYLVSNIS   60 (192)
T ss_dssp             CCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSE--------------------EEEE--EEETTEEEEEEEEEC
T ss_pred             cEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccC--------------------ceEE--cCCCCeEEEEEeccc
Confidence            356677888889999999999998543333344443110                    0001  112334469999998


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccC-
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTG-  228 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~-  228 (384)
                        |.|.|.|.+. ..+......+.|.|+.+|......+....+.+|+.++|.|.+.+ +|..  .+.|++++..+.... 
T Consensus        61 --~~g~~~C~~~-c~~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f  137 (192)
T 1zxq_A           61 --HDTVLQCHFT-CSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF  137 (192)
T ss_dssp             --SCEEEEEEEE-ETTEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEEC
T ss_pred             --cCCeeEEEEE-CCCcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeeccc
Confidence              7899999986 44456778899999998866554333345889999999999965 6665  489999877654321 


Q ss_pred             ---ceeEecc--EEEEcCCCCCCCe-EEEEEEEeCC
Q psy16652        229 ---GSIYRGN--ILKIPNITKTDRG-TYYCVAQNGV  258 (384)
Q Consensus       229 ---~~~~~~~--~l~i~~~~~~d~G-~Y~C~~~~~~  258 (384)
                         .......  .+.+ .++++|.| .|+|.|.-+.
T Consensus       138 ~~~~~~~~~~tv~~~~-~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          138 GKAAPAPQEATATFNS-TADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             CSSTTCTTCEEEEEEE-ECCGGGGGCEEEEEEEEEC
T ss_pred             ccccCcCcceEEEEEE-ecchhhCCceEEEEEEecC
Confidence               0000111  2333 45566666 8999999765

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=99.43  E-value=2.2e-12  Score=101.15  Aligned_cols=149  Identities=13%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...+..+.+.+|++|+|.|.+.+.....+.|+|.........+.... .......+|+.+..+.......|.|.+++.
T Consensus         4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~-~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~   82 (208)
T 4ei6_A            4 KVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIF-SDGDKKEGRFTAHLNKASLHVSLHIRDSQP   82 (208)
T ss_dssp             CEEEECSEEEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECC-SSEEEEETTEEEEEBTTTTBC-CEECSCCG
T ss_pred             eEEEeCCEEEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEEC-CCCcccCCcEEEEEcCCCCEEEEEEEeCcc
Confidence            4566677888999999999999976555689999976433222222222 222226688988876677788999999999


Q ss_pred             CCCeeEEEEEEEcc----CcceeeeEEEEEecCCccccCCCceEEee--cCceEEEEEEeccc-CCCeEEEEeCCCcccc
Q psy16652        154 TDAGIYKCEVIISL----NNKVSAEVELIVRRPPIISDNSTRSVIVS--EGQTVYLYCYANGF-PAPTISWRRDNSAALS  226 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~----~~~~~~~~~l~v~~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~  226 (384)
                      +|+|.|.|.+....    ....-....|.|......   +.+.+...  ....++|.|.+.+. |..++.|.+++..+..
T Consensus        83 ~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~---~~PsVf~l~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~  159 (208)
T 4ei6_A           83 SDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQN---PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT  159 (208)
T ss_dssp             GGCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSS---CCCEEEEEEBSSCTTCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred             cCCCcEEEEEecCCCccccccCCCCEEEEEeCcccC---CCCEEEEcccCCCCceEEEEeeccCCceEeeecccCcEEEe
Confidence            99999999986421    112233456777643111   11112111  11236799999884 4347999998876543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.43  E-value=2.4e-12  Score=89.51  Aligned_cols=92  Identities=18%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             CCCCeeeeCcc-eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         71 RTPTISYISQE-QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        71 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+|.+...+.+ ..+.+|++++|.|.+. .+.+.+.|++++...              ....++.+..  ......|.|.
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i--------------~~~~~~~~~~--~~~~~~L~I~   68 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEI--------------RPSTKYIFEH--KGCQRILFIN   68 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBC--------------CCBTTEEEEE--ETTEEEEEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEEC--------------CCCCCEEEEe--cCCEEEEEEc
Confidence            57788877776 5688999999999998 688899999987652              2234555554  3445689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI  184 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  184 (384)
                      +++.+|+|.|+|.+     +.....+.|.|..+|.
T Consensus        69 ~~~~~D~G~Y~C~a-----g~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           69 NCQMTDDSEYYVTA-----GDEKCSTELFVRSGPS   98 (100)
T ss_dssp             EECTTTCCEEEEEE-----TTEEEEEEEEECCSCC
T ss_pred             CCCcCcCEEEEEEE-----CCceEEEEEEEecCCC
Confidence            99999999999998     4466677888887653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=94.44  Aligned_cols=95  Identities=21%  Similarity=0.301  Sum_probs=72.1

Q ss_pred             CCCCeeee---CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         71 RTPTISYI---SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        71 ~~p~~~~~---~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      .+|.+...   +....+.+|+++.|.|.+.+.|.+.+.|++++...               ...++.+..  ......|.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l---------------~~~~~~~~~--~~~~~~L~   82 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL---------------DTSRVHVRT--SDFDTVFF   82 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEEC---------------CCSSCEEEE--CSSEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEEC---------------CCCcEEEEE--CCCeEEEE
Confidence            35555442   45677899999999999999898899999977542               123444443  44566799


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP  183 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  183 (384)
                      |.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|
T Consensus        83 i~~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           83 VRQAARSDSGEYELSVQIEN-MKDTATIRIRVVEKA  117 (118)
T ss_dssp             ESSCCTTTCEEEEEEEECSS-CEECCEEEEEEECCC
T ss_pred             ECCCChhcCEEEEEEEEeCC-CeEEEEEEEEEEcCC
Confidence            99999999999999998654 467778888887665

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.43  E-value=7e-13  Score=92.33  Aligned_cols=96  Identities=17%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++....              ...+...... ..+...|.|.+
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~--------------~~~~~~~~~~-~~~~~~L~i~~   68 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ--------------SDDLHKMIVS-EKGLHSLIFEV   68 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEEC--------------CCSSSCEEEE-TTTEEEEEESS
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECc--------------CCCcEEEEEc-CCCeEEEEECC
Confidence            45677777888889999999999999988888999999765321              1111111111 33446899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      ++.+|+|.|+|.+.|.. +..+..+.|.|...
T Consensus        69 v~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           69 VRASDAGAYACVAKNRA-GEATFTVQLDVLAK   99 (100)
T ss_dssp             CCGGGCEEEEEEEEETT-EEEEEEEEEEEECC
T ss_pred             CCcccCEEEEEEEEcCC-CeEEEEEEEEEEec
Confidence            99999999999998655 44677777877643

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.43  E-value=8e-13  Score=90.96  Aligned_cols=87  Identities=20%  Similarity=0.277  Sum_probs=69.3

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |.+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+.++.+....     ....|.|.+++.+|+|.|+|.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEG-----TRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEET-----TEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcC-----CEEEEEEcCCCcccCEEEEEEE
Confidence            344445566778999999999999 7888899999999999877776654311     2457999999999999999999


Q ss_pred             EeCCcceEEEEEEEEee
Q psy16652        354 ANKYGSAQKEIELFDRE  370 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~~  370 (384)
                          |....++.|.|.+
T Consensus        83 ----g~~~~~~~l~V~e   95 (95)
T 2k1m_A           83 ----GSSKVKFDLKVIE   95 (95)
T ss_dssp             ----TTEEEEEEEEEEC
T ss_pred             ----CCceEEEEEEEeC
Confidence                6677778887753

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=5e-13  Score=93.54  Aligned_cols=96  Identities=23%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ...++.+...+.+..+.+|++++|.|.+.+.+ +..+.|++++...              ....++.+..  .....+|.
T Consensus         5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i--------------~~~~r~~~~~--~~~~~~L~   68 (104)
T 2eny_A            5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV--------------GSSSRFQATR--QGRKYILV   68 (104)
T ss_dssp             CCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBC--------------SBCSSCEEEE--ETTEEEEE
T ss_pred             ccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEEC--------------CCCCCEEEEE--cCCEEEEE
Confidence            34566788888889999999999999998766 4479999987652              2334666654  34567899


Q ss_pred             EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII  185 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  185 (384)
                      |.+++.+|+|.|+|.+.     .......|.|..+|..
T Consensus        69 I~~v~~~D~G~Y~C~a~-----~~~~~a~L~V~~~p~~  101 (104)
T 2eny_A           69 VREAAPSDAGEVVFSVR-----GLTSKASLIVRERSGP  101 (104)
T ss_dssp             ECSCCTTTCSCEEEEET-----TEEEEECEEEECCCSS
T ss_pred             ECCCCHHHCEEEEEEEC-----CeeEEEEEEEeCCCcC
Confidence            99999999999999873     3456778888877643

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.42  E-value=7.6e-13  Score=91.94  Aligned_cols=94  Identities=23%  Similarity=0.293  Sum_probs=71.1

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++....             ....++....  .....+|.|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------------~~~~~~~~~~--~~~~~~L~i~~   68 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR-------------PDQRRFAEEA--EGGLCRLRILA   68 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECC-------------CBTTEEEEEC--GGGEEEEEESS
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECC-------------CCCCEEEEEC--CCCEEEEEEcc
Confidence            46788888888899999999999999988888999999775421             1122333322  34456899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      ++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus        69 ~~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~   97 (99)
T 1u2h_A           69 AERGDAGFYTCKAVNEY-GARQCEARLEVR   97 (99)
T ss_dssp             CCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             CCcCCCEEEEEEEEECC-CceeEEEEEEEE
Confidence            99999999999998654 445666677765

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=91.21  Aligned_cols=94  Identities=21%  Similarity=0.379  Sum_probs=72.9

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++...              ....++.+..  ......|.|.
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~--------------~~~~~~~~~~--~~~~~~L~i~   67 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--------------TQGGKYKLSE--DKGGFFLEIH   67 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEEC--------------CSSSSEEEEE--ETTEEEEEEC
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEEC--------------cCCCCEEEEE--eCCEEEEEEC
Confidence            34677888888889999999999999998888899999976542              2335565554  3455689999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus        68 ~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~   97 (99)
T 3puc_A           68 KTDTSDSGLYTCTVKNSA-GSVSSSCKLTIK   97 (99)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             CCCcccCEEEEEEEEeCC-CcEeEEEEEEEE
Confidence            999999999999998654 445666666664

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.42  E-value=3.4e-12  Score=101.54  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=95.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...+..+.+.+|++|+|.|.+.+. ...+.|+|.........+.... ... ...+|+.+..+.......|.|.+++.
T Consensus         3 ~V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~-~~~-~~~~Rfs~~~~~~~~~~sLtI~~lq~   79 (229)
T 3mbe_C            3 PVEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLA-QGT-KENGRLKSTFNSKERYSTLHIKDAQL   79 (229)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEES-SEE-EEETTEEEEEETTTTEEEEEECSCCS
T ss_pred             cEEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeC-CCC-ccCCCEEEEECCCCCEEEEEEECCcc
Confidence            35566777889999999999999776 5689999976433222222222 211 45688888866677889999999999


Q ss_pred             CCCeeEEEEEEEcc-Cc--ceeeeEEEEEecCCccccCCCceEE--eecCceEEEEEEecc-cCCCeEEEEeCCCccc
Q psy16652        154 TDAGIYKCEVIISL-NN--KVSAEVELIVRRPPIISDNSTRSVI--VSEGQTVYLYCYANG-FPAPTISWRRDNSAAL  225 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~  225 (384)
                      +|+|.|.|.+.... ..  .......|.|......   +.+.+.  ......++|.|.+.+ +|..++.|.+++..+.
T Consensus        80 ~DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~---p~P~Vf~~~~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~~  154 (229)
T 3mbe_C           80 EDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQN---PEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI  154 (229)
T ss_dssp             TTCBEEEEEEECSSSTTCEEECCCCEEEEECCCSS---CCCEEEEEECTTCTTCEEEEEESCCSSSCCCCCCSSSEEE
T ss_pred             cCCCCEEEEEEeCCCcccceeCCCEEEEEecccCC---CCCEEEEccCCCCCEEEEEEccccCCceEeEeeccCceEe
Confidence            99999999987421 11  1223346666542110   011111  112235899999988 4544799999886553

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=8.4e-14  Score=97.18  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=69.4

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC----ceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ----HYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|+++|..+....    ++.+..  .   .....|.|.+++.+|+|.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~--~---~~~~~L~I~~~~~~D~G~   81 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKK--D---GKRHILIFSDVVQEDRGR   81 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEE--C---SSEEEEECSSCCGGGCSB
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEE--C---CCEEEEEECCCChhhCEE
Confidence            45566666677889999999999999988 9999999999987666    334432  1   124579999999999999


Q ss_pred             EEEEEEeCCcceEEEEEEEEeeee
Q psy16652        349 YACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       349 Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |+|.|.|    ...+..|.|.++|
T Consensus        82 Y~C~a~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           82 YQVITNG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             EEEECSS----CEECCBEEEECCC
T ss_pred             EEEEEcC----CcEEEEEEEeCCC
Confidence            9999987    3345667776653

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=7.3e-13  Score=92.76  Aligned_cols=94  Identities=18%  Similarity=0.291  Sum_probs=75.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+.+|+.+.|.|. .+.|.+.+.|++++..+..+.++.+...     .....|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQE-----GLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEE-----TTEEEEEEESCCTTTCSEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeC-----CCEEEEEECCCCcccCEEEEEE
Confidence            455655666778899999999999 4889999999999999987777665421     1234799999999999999998


Q ss_pred             EEeCCcceEEEEEEEEeeeecCCc
Q psy16652        353 AANKYGSAQKEIELFDRETQTGDE  376 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~~~~~~~  376 (384)
                          .|.....+.|.|.+.|.+|.
T Consensus        82 ----~g~~~~~~~l~V~~~p~~p~  101 (103)
T 2dku_A           82 ----IGQAQSRAQLLVQGRRSGPS  101 (103)
T ss_dssp             ----CSSCBCCEEEEEECSCCCCS
T ss_pred             ----eCCceEEEEEEEeCccCCCC
Confidence                67777888999988876553

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.41  E-value=3.4e-13  Score=94.85  Aligned_cols=95  Identities=21%  Similarity=0.254  Sum_probs=74.6

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ....|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++...              ....++.+..  ......|.|
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~I   74 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL--------------STSARHQVTT--TKYKSTFEI   74 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCC--------------TTCSSEEEEE--CSSEEEEEE
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEEC--------------CCCCCEEEEE--CCCEEEEEE
Confidence            445678888899999999999999999999888899999977652              1234555554  345678999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      .+++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus        75 ~~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~  105 (106)
T 1nct_A           75 SSVQASDEGNYSVVVENSE-GKQEAEFTLTIQ  105 (106)
T ss_dssp             CCCCSSCCSEEEECCBCSS-CBCCEEEEEEEC
T ss_pred             CcCCchhCEEEEEEEEeCC-CeEEEEEEEEEE
Confidence            9999999999999998554 446667777764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.41  E-value=9.9e-13  Score=89.10  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=57.3

Q ss_pred             CCCeeeeCccee--eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQI--KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      |+.|..+..+..  +.+|+++.|.|.+.+ |.+.+.|+|++..+              ..+.++.+..  .+...+|.|.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i--------------~~~~~~~i~~--~~~~~~L~I~   66 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEV--------------EESDFVVLEN--EGPHRRLVLP   66 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCC--------------CCCSSCEEEE--ETTEEEEEES
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEe--------------eeeeeeeEEe--cCCeEEEEeC
Confidence            455555555544  468999999999865 66789999988763              3345666655  3456789999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|+|.|+|.+.
T Consensus        67 ~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A           67 ATQPSDGGEFQCVAG   81 (91)
T ss_dssp             SCCGGGCSEEEEECS
T ss_pred             CCChhhcEEEEEEEc
Confidence            999999999999873

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=99.41  E-value=7.8e-13  Score=105.25  Aligned_cols=180  Identities=13%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCce-eeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSL-IIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +...+..+.+.+|++|+|.|.+.+... ..+.|||.........+........ ....+|+.+..+.......|.|.+++
T Consensus         6 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   85 (211)
T 2ak4_D            6 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   85 (211)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             eEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccc
Confidence            455566778999999999999876433 3799999875432232222222211 12468898886667788999999999


Q ss_pred             CCCCeeEEEEEEEcc--C-cceeeeEEEEEecCCccccCCCceEEe--ecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652        153 ETDAGIYKCEVIISL--N-NKVSAEVELIVRRPPIISDNSTRSVIV--SEGQTVYLYCYANG-FPAPTISWRRDNSAALS  226 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~--~-~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~  226 (384)
                      .+|+|.|.|.+....  . ........|.|.......   .+.+.+  ...+.++|.|.+.+ +|.+.+.+.........
T Consensus        86 ~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~---~P~V~~~~~~~~~vtL~Cl~~gf~P~~~v~~~~~~~~~~t  162 (211)
T 2ak4_D           86 VVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT  162 (211)
T ss_dssp             GGGCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSC---CCEEEEEBCCSSSCCEEEEEESCCTTCCCCCCSSSSCEEC
T ss_pred             cccCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCC---CCEEEEccCCCCceEEEEEeeeecCCcccccccccceEec
Confidence            999999999997431  1 112233466665332111   111211  12347899999987 67776622111110000


Q ss_pred             cCcee---EeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        227 TGGSI---YRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       227 ~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      .....   .-.+. ++...+..+...|+|.+.+..
T Consensus       163 ~~~~~~~~~~~S~-t~~~~~w~~g~~~tC~V~~~~  196 (211)
T 2ak4_D          163 DKCVLDMRSMDFK-SNSAVAWSNKSDFACANAFNN  196 (211)
T ss_dssp             CCEEEEEGGGTEE-EEEEEEEECSTTCCTTSTTTT
T ss_pred             Cchhccccccccc-cccHHHccCCCceEEEEecCC
Confidence            00000   01223 555556667778999887653

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.41  E-value=3.3e-12  Score=90.18  Aligned_cols=91  Identities=16%  Similarity=0.223  Sum_probs=63.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...|....+.+|++|+|.|.+.+.+.+.+.|++.........+.............|+.+..  .....+|.|.+++.
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~   80 (108)
T 1jhl_L            3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEP   80 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCT
T ss_pred             ceeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCH
Confidence            3555677788999999999999988777899999976432222121111100001246777665  45677899999999


Q ss_pred             CCCeeEEEEEEEc
Q psy16652        154 TDAGIYKCEVIIS  166 (384)
Q Consensus       154 ~d~G~Y~C~~~~~  166 (384)
                      +|+|.|+|.+.+.
T Consensus        81 ~DsG~Y~C~~~n~   93 (108)
T 1jhl_L           81 EDFAMYICQQHNE   93 (108)
T ss_dssp             TCCSEEEEEECSS
T ss_pred             HHCEEEEEEEccC
Confidence            9999999999754

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.41  E-value=1.9e-12  Score=89.12  Aligned_cols=80  Identities=23%  Similarity=0.426  Sum_probs=66.5

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      .+....+.+|+.+.|.|.+.+.| +.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus        15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l   92 (95)
T 2ckn_A           15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSV   92 (95)
T ss_dssp             BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEE-EEEEEE
T ss_pred             CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcE-EEEEEE
Confidence            35667899999999999998887 7999999988777665555567899999999999999999999987764 555555


Q ss_pred             EE
Q psy16652        269 EV  270 (384)
Q Consensus       269 ~v  270 (384)
                      .|
T Consensus        93 ~V   94 (95)
T 2ckn_A           93 NV   94 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=7.6e-13  Score=92.66  Aligned_cols=95  Identities=23%  Similarity=0.345  Sum_probs=74.0

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...+....+.+|++++|.|.+.+ +.+.+.|++++...              ....++.+..  ......|.|
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~--------------~~~~~~~~~~--~~~~~~L~I   67 (103)
T 2edf_A            5 SSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAI--------------RKSQKYDVVC--EGTMAMLVI   67 (103)
T ss_dssp             CCCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBC--------------CCSSSEEEEE--ETTEEEEEE
T ss_pred             CCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEc--------------cCCCCEEEEE--CCCEEEEEE
Confidence            456788888888899999999999999986 66789999987652              2234555554  334668999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII  185 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  185 (384)
                      .+++.+|+|.|+|.+.|     .+..+.|.|..+|..
T Consensus        68 ~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           68 RGASLKDAGEYTCEVEA-----SKSTASLHVEEKASG   99 (103)
T ss_dssp             SSCCTTTCSEEEEECSS-----CEEEEEEEECCCSSS
T ss_pred             CCCCcccCEEEEEEEcc-----CCcEEEEEEeCCCCC
Confidence            99999999999999864     466778888776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-13
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	6e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-11
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-11
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	8e-11
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-10
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.002
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	7e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	5e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.001
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-08
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	8e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.003
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-06
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-07
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	1e-07
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	8e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.003
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	0.003
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	7e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	9e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	9e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	5e-05
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	9e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-05
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	1e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-06
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-05
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	7e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	7e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	7e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-05
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	1e-05
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.001
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	3e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	4e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.001
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	6e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	6e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.002
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	7e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	1e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.002
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	5e-04
d1hkfa_	108	b.1.1.1 (A:) NK cell activating receptor NKP44 {Hu	5e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	5e-04
d1smoa_	113	b.1.1.1 (A:) TREM-1 (triggering receptor expressed	5e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	6e-04
d1k5nb_	100	b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapi	8e-04
d1qfoa_	118	b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mo	0.001
d2g5ra1	121	b.1.1.1 (A:24-144) N-terminal domain of sialic aci	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.002
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.004
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 64.4 bits (156), Expect = 7e-14
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
            P       + ++V +GQ V + C   G PAP + W  +     S G +    + L I  
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSGLVIKG 60

Query: 242 ITKTDRGTYYCVAQNGVG 259
           +   D+G Y C A N  G
Sbjct: 61  VKNGDKGYYGCRATNEHG 78

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.2 bits (127), Expect = 6e-10
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
           AP       +     Q  D  + C V   P P +VW  +   +   +             
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG------ 55

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
               L +  ++    G Y C+A N++G    E  +
Sbjct: 56  ----LVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.9 bits (152), Expect = 3e-13
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
            P I            GQ V L C+A G P P I WR+ + +  S    +    +L I N
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQN 61

Query: 242 ITKTDRGTYYCVAQNGVGR 260
           +   D GTY C A+N  GR
Sbjct: 62  VDFEDEGTYECEAENIKGR 80

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 4e-09
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 271 EFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329
           ++AP I    P    AL      LEC     P P I W K      +    S        
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP------ 55

Query: 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                 L +  ++    G Y C+A N  G    +  +
Sbjct: 56  -----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 17/98 (17%)

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------ 233
           R  PI+      +     G  V   C       P I W +      S  G          
Sbjct: 2   RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 61

Query: 234 -----------GNILKIPNITKTDRGTYYCVAQNGVGR 260
                        +L I N+T  D G Y C+A N +G 
Sbjct: 62  KAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 99

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-09
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 274 PVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQI--------MNNQHYSVSH 324
           P++    P     +   D    C V +   P I WIK   +         +       + 
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              + +     L +  +     G+Y C A N  G +     L
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 106

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 23/112 (20%), Positives = 33/112 (29%), Gaps = 4/112 (3%)

Query: 68  SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI 127
           S  R    + +       +    +  C V  +D  P I       K            L 
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLK 59

Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           +  +    TTD E     L I+ +   DAG Y C    S+         L V
Sbjct: 60  VLKAAGVNTTDKEIEV--LYIRNVTFEDAGEYTCLAGNSI-GISFHSAWLTV 108

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (143), Expect = 5e-12
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY------RGN 235
           P + +  S  +   + GQ+V L C A+GFP PT+SW +D     +              +
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGR 260
            L I N+ K D   Y C+A+N  G 
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGE 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 274 PVITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
           P +   +              L C  + +P P + W KDG  I N +     H  + D  
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD-- 61

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             + L +  +++    +Y C A NK G     I L
Sbjct: 62  -SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 7e-12
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDN-----SAALSTGGSIYRGNILKIPNITKT 245
           R   V    TV   C A G P PT+ W ++         +       +   L + ++  +
Sbjct: 13  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 72

Query: 246 DRGTYYCVAQNGVG 259
           D+G Y CV +N  G
Sbjct: 73  DKGNYTCVVENEYG 86

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 4e-11
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 273 APVITINRPRQGQALQY-----DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
           AP  T N  +  + L            C     P P + W+K+G +              
Sbjct: 1   APYWT-NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV-- 57

Query: 328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                  SL + ++     G Y C   N+YGS      L
Sbjct: 58  --RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----SIYRGNIL 237
           P II         V  G++V L+    G    T +W +       +      +   G+ L
Sbjct: 1   PQIIQ--FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
            I    +   G Y  + +N +G   +  + + V   P
Sbjct: 59  TILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 6e-10
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              L   V    P    W+K   QI  ++H  V +       + + L ++   +   G Y
Sbjct: 17  SVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-----SENGSKLTILAARQEHCGCY 71

Query: 350 ACKAANKYGSAQKEIEL 366
                NK GS Q ++ L
Sbjct: 72  TLLVENKLGSRQAQVNL 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P I    ++Q     ++ +L   V         WM            I  S  + + +S 
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWM-------KFRKQIQESEHMKVENSE 53

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
                        L+I   ++   G Y   V   L     A+V L V   P
Sbjct: 54  N---------GSKLTILAARQEHCGCYTLLVENKL-GSRQAQVNLTVVDKP 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 58.4 bits (140), Expect = 1e-11
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS------TGGSIYRGN 235
           P  +S +    ++   G    +YC     P    ++ ++            T  +   G 
Sbjct: 6   PQYVSKD----MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61

Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
            L        D G Y C   NGVG+  K ++ + V
Sbjct: 62  RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
             ++ C   + P     + K+G  +  N    ++     +  S   L   T      G Y
Sbjct: 20  VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH---NRTSGKRLLFKTTLPEDEGVY 76

Query: 350 ACKAANKYGSAQK 362
            C+  N  G  QK
Sbjct: 77  TCEVDNGVGKPQK 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 2e-11
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS------TGGSIYRGNILKIPNITK 244
             + VS+GQ V L C   G   P I W +D +   +           +    L + ++ +
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVE 271
           +D G Y+C  ++G    + + + + VE
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT-IERRQFGQ 348
              L C VE    P I W+KDG  + N     +       E        +  +ER   G+
Sbjct: 13  PVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV----SEQHWIGFLSLKSVERSDAGR 68

Query: 349 YACKAANKYGSA 360
           Y C+  +   + 
Sbjct: 69  YWCQVEDGGETE 80

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
           Q   L CSV+  ++  + W+K                 ++ +  +  +    +     LS
Sbjct: 12  QPVKLNCSVEGMEEPDIQWVKDGA--------------VVQNLDQLYIPVSEQHWIGFLS 57

Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           +K ++ +DAG Y C+V      ++S  V L V
Sbjct: 58  LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKIP 240
           P +++    RS  V  G  V   C A    PA T+ W R ++  L +    + G IL I 
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-ILTIR 59

Query: 241 NITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
           N+  +D GTY C   N      +    + V+
Sbjct: 60  NVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 9e-06
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 274 PVITINRPRQGQALQ-YDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
            ++T+   R        D    C  ++  P   +VW +     + ++             
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------D 51

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +  L +  ++    G Y C  +N +   Q    L
Sbjct: 52  FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 86

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 8e-11
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329
           V FAP IT     +     +   +   V+  P PA+ W  +G  +  +++       T+ 
Sbjct: 1   VHFAPTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                 L++        G Y   A N+YG  +K+I  
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 14/107 (13%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA---------ALSTGG 229
           V   P I    T     +      +     G P P + W  + +           +    
Sbjct: 1   VHFAPTI----TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
                  L++ N T  + G Y  +A+N  G+  ++ I+      P I
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIP 240
           +P  +            G  +   C A+G P P + W RD     S       G  L+  
Sbjct: 1   QPDWLD--VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFS 58

Query: 241 NITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
            +   D G Y CVA+N  G  +  +  + V+
Sbjct: 59  KLVLEDSGMYQCVAENKHGT-VYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           D    C     P PA+ W++DG  + +     VS            LR   +     G Y
Sbjct: 18  DLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG---------ELRFSKLVLEDSGMY 68

Query: 350 ACKAANKYGSAQKEIEL 366
            C A NK+G+     EL
Sbjct: 69  QCVAENKHGTVYASAEL 85

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 3e-10
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI- 236
           I+ +P        RS+ V EG++    C  +G P PT++W R      ++          
Sbjct: 2   ILTKP--------RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY 53

Query: 237 ---LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
               +I ++  +D G Y  V +N  G+  +    + ++
Sbjct: 54  KSTFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A   C  +  P P + W++ G  +  +  + V+       F  +S     ++    G Y
Sbjct: 16  SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS-----VQASDEGNY 70

Query: 350 ACKAANKYGSAQKEIELFDRE 370
           +    N  G  + E  L  ++
Sbjct: 71  SVVVENSEGKQEAEFTLTIQK 91

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSI-YRG 234
           L  RR P         +    G +V L C         T+ W     AA S        G
Sbjct: 1   LAPRRCPAQEVARG-VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGR 260
             L + ++   D G Y C        
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPAG 85

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 24/111 (21%)

Query: 70  QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLII 128
           +R P               +  L C     +D   V W+    A    P   +  G    
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR--- 60

Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
                            L ++ +Q  D+G Y C        + +  V L+V
Sbjct: 61  ----------------RLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLV 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDR 247
                 EG+   + C       PTI W+      +        +   N L+I  I KTD 
Sbjct: 9   TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 68

Query: 248 GTYYCVAQNGVGRGMK-RNIAVEV 270
           GTY C  +      +  ++I V V
Sbjct: 69  GTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
           DA++ C V +  PP I+W   G  ++  +       + +        ++  I++   G Y
Sbjct: 18  DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL------QIRGIKKTDEGTY 71

Query: 350 ACKAANKYGSAQKEIEL 366
            C+            ++
Sbjct: 72  RCEGRILARGEINFKDI 88

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
           P +   +   +    E       C A G P P +   +D +         +   I +   
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT---------FPLPIGESVT 53

Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
           +T+   GTY C A++  G  + R + V V 
Sbjct: 54  VTRDLEGTYLCRARSTQGE-VTREVTVNVL 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 12/97 (12%), Positives = 22/97 (22%), Gaps = 20/97 (20%)

Query: 272 FAPVITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329
           + P +                    C     P P +  +KDG   +              
Sbjct: 1   YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEG 60

Query: 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                              Y C+A +  G   +E+ +
Sbjct: 61  T------------------YLCRARSTQGEVTREVTV 79

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.2 bits (121), Expect = 5e-09
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG----NI 236
           + P++ D     V+  E     L C   G         + +  + +              
Sbjct: 1   KYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
           L       +D G Y C A+   G    R I+   
Sbjct: 60  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332
            PV+               +LEC +E          K   +  N Q ++ +         
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-----KD 56

Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQ 361
           + SL  +  +    G Y C A    G A 
Sbjct: 57  EGSLVFLRPQASDEGHYQCFAETPAGVAS 85

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNI 236
           +P  I         V EGQ+   YC       P ++W +D+     +   + R       
Sbjct: 1   QPRFIV--KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58

Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
           L I  +   D+G Y   A+N  G
Sbjct: 59  LTINRVKGDDKGEYTVRAKNSYG 81

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A   C V A  PP + W KD  ++  +  Y   +       +D  L +  ++    G+Y
Sbjct: 18  SANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN-----GNDYGLTINRVKGDDKGEY 72

Query: 350 ACKAANKYGSAQKEIEL 366
             +A N YG+ ++ + L
Sbjct: 73  TVRAKNSYGTKEEIVFL 89

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 7e-09
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329
           V + P +      + +    +  +E  V   PPP + W+ +G  +  ++   V  +    
Sbjct: 2   VYYPPRVV--SLEEPELRL-EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHV-EYYQEG 57

Query: 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
           E S+  L          G Y   A N  G+A + I  
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 94

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 19/107 (17%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAALST-------- 227
           V  PP +       V + E +    +C      G P PT+ W  +      +        
Sbjct: 2   VYYPPRV-------VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 54

Query: 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
                    L     T  + G Y  +A+N +G    + I       P
Sbjct: 55  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 100

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332
           AP I      Q      DA     V   P P   W K+GV+I  +       +    E +
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR----IYWYWPEDN 59

Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              L +  +          KA N  G       L
Sbjct: 60  VCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 9e-08
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-----SIYRGNILKIPNITKT 245
           +S  V +G   +      G P P   W ++      +              L I ++T  
Sbjct: 12  QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE 71

Query: 246 DRGTYYCVAQNGVGR 260
           D  +    A N  G 
Sbjct: 72  DSASIMVKAINIAGE 86

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 182 PPIISD--NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY---RGNI 236
            P+  +    T     S  + V L C A   P  T  W+ + +       S Y    G++
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268
           +    +   D G+Y CVA N  G  + R  ++
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 272 FAPVITINRPR-----QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326
           + PV    +P      +G A +    L C   A PP    W  +G ++           A
Sbjct: 3   YGPVFEE-QPAHTLFPEGSAEE-KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA 60

Query: 327 TSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360
                    +    ++ +  G Y C A N  G+ 
Sbjct: 61  GD------LVISNPVKAKDAGSYQCVATNARGTV 88

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 18/111 (16%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRG------ 234
           PP      +    V+ G    L C   +G P    SW +D  + L+      R       
Sbjct: 2   PPSKPT-ISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 235 ------NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN 279
                   L    +T  D G YYC AQNG G    R+ A  ++    + +N
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA-MRSEAAHMD---AVELN 107

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 290 DAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE---RRQ 345
            A+L C   +  PP    W KDG+ ++         F  S    D     +  +      
Sbjct: 19  RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 78

Query: 346 FGQYACKAANKYGSAQK 362
            G+Y C+A N YG+A +
Sbjct: 79  SGEYYCQAQNGYGTAMR 95

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 8/109 (7%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P+   IS      I   A L CS              D    +  L      +    +S 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDG---ISMLTADAKKTRAFMNSS 59

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-SAEVELIVR 180
           F +               +   D+G Y C+        + S    +   
Sbjct: 60  FTIDPKSGDLI----FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 104

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 4e-08
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNIT 243
           ++V V+ GQ     C A G                       +            + N T
Sbjct: 9   QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 68

Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEV 270
           K D G Y C+ +   G G+     + V
Sbjct: 69  KRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 12/72 (16%), Positives = 17/72 (23%), Gaps = 2/72 (2%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A  +C                  I            TS      S  V+   +R  G+Y
Sbjct: 18  FATFQCSAIGRTVAGDRLWLQ--GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 75

Query: 350 ACKAANKYGSAQ 361
            C    + G   
Sbjct: 76  RCMIRTEGGVGI 87

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 14/110 (12%)

Query: 71  RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD 130
           RTP    I   ++    Q A  +CS                  +                
Sbjct: 1   RTPHFLRIQNVEVN-AGQFATFQCSAIGRTVAGDRLWLQGIDVRD-----------APLK 48

Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
                ++    ++   ++    + DAG Y+C +       +S   EL+V+
Sbjct: 49  EIKVTSSRRFIAS--FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-08
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 293 LECHVEAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
           +   V+  P P++ W+ +G  +   +         A ++      LR+        G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 351 CKAANKYGSAQKEIEL 366
             AAN +G A   I  
Sbjct: 80  LLAANPFGQASASIMA 95

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 191 RSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAALSTG-----------GSIYRGNI 236
            SV +     ++ +C     +G PAP++ W  + S    T                R   
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
           L++   T  + G Y  +A N  G+    +I       P   
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEF 104

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 192 SVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
           + +V EGQ ++L C+         + + +D  A        Y  + + I N T  D GTY
Sbjct: 9   AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSGTY 64

Query: 251 YCVAQNGVGRGMKRNIAVEVEFAP 274
           YC  +          + + V  AP
Sbjct: 65  YCTGKVWQLDYESEPLNITVIKAP 88

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 88  QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS-TYIL 146
            T +L C+          W   +  K +      ++      + R            + L
Sbjct: 10  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
            IK ++  D+  Y CEV          EV+L+V
Sbjct: 70  IIKNLKIEDSDTYICEVEDQ-----KEEVQLLV 97

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 21/88 (23%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--------AALSTGGSIYRGNI------ 236
           + V+  +G TV L C A+   +    W+  N         + L+ G S            
Sbjct: 2   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61

Query: 237 -------LKIPNITKTDRGTYYCVAQNG 257
                  L I N+   D  TY C  ++ 
Sbjct: 62  WDQGNFPLIIKNLKIEDSDTYICEVEDQ 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITK 244
                  G+ V L C  +      + W ++    +    S YR       +IL I   TK
Sbjct: 8   EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 66

Query: 245 TDRGTYYCVAQNGVG 259
            D   Y  +   G  
Sbjct: 67  ADAAEYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 276 ITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
           I + +  +           LEC V +     + W K+G +I+         +    E   
Sbjct: 1   IMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKS---RYRIRVEGKK 56

Query: 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
             L +    +    +Y+        SA+  ++L
Sbjct: 57  HILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-- 233
           E      P  +  +   + V EG      C   G+P P + W +D++    +        
Sbjct: 2   EEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60

Query: 234 ---GNILKIPNITKTDRGTYYCVAQNGVGR 260
                 L I  +   D   Y C A N +G 
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLGE 90

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            A  +C VE YP P ++W KD   +  ++H+ + +     E  + SL +  +      +Y
Sbjct: 25  AARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD----EEGNCSLTISEVCGDDDAKY 80

Query: 350 ACKAANKYGSAQKEIEL 366
            CKA N  G A    EL
Sbjct: 81  TCKAVNSLGEATCTAEL 97

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSI--------- 231
           PP            + G    L C   +G P    +W +D     +   S          
Sbjct: 2   PPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 232 --YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
                  L    ++ +D G Y C A+NG G     + AV +E
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
           P            +   A+L C  +   PP+         +M     S   F+ S    +
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 334 TSLRVITI---ERRQFGQYACKAANKYGSAQKEIEL 366
            +   +          G+Y+C+A N YG+      +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 9/108 (8%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P+   ++      I   A L CS Q            D         +  +       S 
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGI------VMPTNPKSTRAFSN 56

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIV 179
                +P T   +     +  +D G Y CE          S  V +  
Sbjct: 57  SSYVLNPTTGELV--FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-07
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH--YSVSHFATSDEF 331
           P +   +  +       A+L C  E+ PP             +      S S F  S   
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 332 SDTSLRVITIERRQF-GQYACKAANKYGSAQKEIEL 366
             + L +  +      GQY C   +  GS Q  I L
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 13/90 (14%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------- 233
           PP +      S  ++EG+T  L C +   P  T       + +                 
Sbjct: 2   PPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 234 ---GNILKIPNITKTDR-GTYYCVAQNGVG 259
               + L I N+      G Y C   +  G
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKG 90

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 9/108 (8%)

Query: 73  PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
           P +  +   +  +  +TA L C  +             T  + + L         +  S 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS- 61

Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
                  +  + +       E D G Y+C    S      A + L VR
Sbjct: 62  -------QGRSELHIENLNMEADPGQYRCNGTSSK-GSDQAIITLRVR 101

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 7e-07
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 88  QTADLKCSV---QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
           +TADL C     Q      ++    D    +               S++   T  ++ ++
Sbjct: 10  ETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSW 69

Query: 145 ILSIKEIQETDAGIYKCEVI----ISLNNKVSAEVELIVR 180
            L +  +Q  D G+Y+C +       +        EL V 
Sbjct: 70  TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-07
 Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 18/108 (16%)

Query: 174 EVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIY 232
           +V+L ++R             +  G    L C        P ++W + N           
Sbjct: 2   DVQLYIKRQ--------SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ 53

Query: 233 R---------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
                       IL    +   D G+Y C A          +  + V 
Sbjct: 54  TSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 1/73 (1%)

Query: 290 DAILECHVEAYP-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
              LEC V+     P + W K             + +      S   L    +     G 
Sbjct: 20  PFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGS 79

Query: 349 YACKAANKYGSAQ 361
           Y C A  +    +
Sbjct: 80  YRCSANFQSNLIE 92

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 9e-07
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 18/96 (18%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI--------- 231
           RP I+S  +  ++ V  G  + L C   G  +    W+ + S        +         
Sbjct: 1   RPVIVSPANE-TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59

Query: 232 -------YRGNILKIPNITKTDRGTYY-CVAQNGVG 259
                      +L I  I        + C A+N  G
Sbjct: 60  PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 95

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-05
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 274 PVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS-------VSHF 325
           PVI        +        L C+V         W  +G  I  +            +  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 326 ATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIEL 366
                   T L +  IE R +   + C A N +G     I+L
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 9e-07
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG-NIL 237
           V +P +   N+T    V E  +V L C +N   A         S  L+   ++ +  +IL
Sbjct: 3   VTQPFLQVTNTT----VKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSIL 58

Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
           +I  I + D G Y C   N V      +I +++ F P
Sbjct: 59  RIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----I 236
           +P I++  ++R + +  G T  L     G P PT +W   +S A      +         
Sbjct: 2   KPKILT--ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
           +  P+  + D G Y    +N +G   +    V V+
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              LE      P P   W      + ++            + S TS+   + +R   G Y
Sbjct: 19  THNLEVDFIGAPDPTATW-----TVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNY 73

Query: 350 ACKAANKYGSAQKEIEL 366
             K  N+ G  +   E+
Sbjct: 74  KLKVKNELGEDEAIFEV 90

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 192 SVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
             +  E   ++L C++        +++ ++           +  +   IP  T  D G+Y
Sbjct: 11  RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK----DRKYFHHNSDFHIPKATLKDSGSY 66

Query: 251 YCVAQNGVGRGMKRNIAVEVEFA 273
           +C    G        + + +  A
Sbjct: 67  FCRGLVGSKNVSSETVNITITQA 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 37/116 (31%)

Query: 182 PPII----SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-- 235
           PP I          +++V  G  + L    +G PAPT+ W++  +               
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 236 -------------------------------ILKIPNITKTDRGTYYCVAQNGVGR 260
                                          I  +    K D G Y    +N VG 
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE 119

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 13/101 (12%), Positives = 21/101 (20%), Gaps = 24/101 (23%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSV------------------------SHF 325
              L+  +   P P ++W K   Q                                    
Sbjct: 26  KLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV 85

Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                   +   V   E+   G Y     N  G  Q  + +
Sbjct: 86  RVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 192 SVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
            +   EG+T+ L C++    P   +++ ++  +   +           IP    +  G Y
Sbjct: 9   HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS----RSDPNFSIPQANHSHSGDY 64

Query: 251 YCVAQNGVGRGMKRNIAVEV 270
           +C    G      + + + V
Sbjct: 65  HCTGNIGYTLYSSKPVTITV 84

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL----------- 225
           L V  PPIIS  ST++     G+   + C+    P P           L           
Sbjct: 2   LTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59

Query: 226 STGGSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
           +        + L I NI     +  Y C A N  G      I ++ +
Sbjct: 60  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQ 105

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 268 VEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI-KDGVQIMNNQHYSVSHFA 326
           + V   P+I+  + +     +    ++C + + PPP  +        + +      +   
Sbjct: 2   LTVNGPPIISSTQTQHALHGE-KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 327 TSDEFSDTSLRVIT--IERRQFGQYACKAANKYGSAQKEIEL 366
            S E    S   I+  +       Y C A N +GS  + I L
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 102

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-LKIPNITKTDR 247
           S R      G T  L C      A      ++      +      G   L I N+++ D 
Sbjct: 3   SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 62

Query: 248 GTYYCVAQNGVG 259
           G Y C+++  V 
Sbjct: 63  GVYQCLSEERVK 74

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA------------ALSTG 228
           +  + +  S   V V E +++ L C  +GF +P + W+    +            A    
Sbjct: 1   KGSVYTAQS--DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58

Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEV 270
              +  + +   ++T+ D G Y C+     G+     +I + V
Sbjct: 59  RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD---EFSDTSLRVITIERRQF 346
              L C    +  P + W            Y+    A       FS + +   ++ R+  
Sbjct: 18  SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDN 77

Query: 347 GQYACKAANKYGSAQKEIEL 366
           G+Y C  + + G    E+ +
Sbjct: 78  GEYTCMVSEEGGQNYGEVSI 97

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234
            EL  R  P  +             +  ++ Y NG                    SI  G
Sbjct: 20  AELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEG 79

Query: 235 NI-LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR 282
            + L+I N+  +D G Y C  ++   +     + ++VE  P   IN  R
Sbjct: 80  KVALRIQNVRFSDEGGYTCFFRDHSYQEEA-AVELKVE-DPFYWINPGR 126

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 8/105 (7%)

Query: 88  QTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS----RFQLTTDPE 140
             A+L C +     A    V W +   ++ +                       L     
Sbjct: 18  DEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIG 77

Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
                L I+ ++ +D G Y C      + +  A VEL V  P   
Sbjct: 78  EGKVALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVEDPFYW 121

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 18/95 (18%)

Query: 290 DAILECHVEAYPPPAIVWIKD------------------GVQIMNNQHYSVSHFATSDEF 331
           +A L C +        + +                      +              S   
Sbjct: 19  EAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGE 78

Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
              +LR+  +     G Y C   +     +  +EL
Sbjct: 79  GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 193 VIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYR----GNILKIPNITKTDR 247
           ++ S  +     C  N      TI+W +D+S    +     R       L        D 
Sbjct: 12  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 71

Query: 248 GTYYCVAQNGVGRGMKRNIAVEV 270
           G YYCV +N     ++  I+ + 
Sbjct: 72  GHYYCVVRNSSYC-LRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 6/77 (7%)

Query: 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
            +  C +        I W KD  +   +   +              L  +  +    G Y
Sbjct: 20  DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH-----QHKEKLWFVPAKVEDSGHY 74

Query: 350 ACKAANKYGSAQKEIEL 366
            C   N     + +I  
Sbjct: 75  YCVVRNSSYCLRIKISA 91

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 8e-06
 Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 6/82 (7%)

Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RG 234
           ++          +  VS+G  + L           + W ++      +G           
Sbjct: 3   KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAK 61

Query: 235 NILKIPNITKTDRGTYYCVAQN 256
             L I   +  D   Y CV   
Sbjct: 62  RTLTISQCSLADDAAYQCVVGG 83

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 9e-05
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
              L   + A     + W+K+G +I  +    +         +  +L +          Y
Sbjct: 23  KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES----IGAKRTLTISQCSLADDAAY 77

Query: 350 ACKAANKYGSAQKEIE 365
            C    +  S +  ++
Sbjct: 78  QCVVGGEKCSTELFVK 93

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 84  KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETST 143
           K++ + A L C    + +      ++   K+ + +   MSG + I       T    T+ 
Sbjct: 6   KEVKEVATLSCGHNVSVEEL-AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 144 YILSIKEIQETDAGIYKCEVII----SLNNKVSAEVELIVR 180
             + I  ++ +D G Y+C V+     +   +  AEV L V+
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK 105

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 19/98 (19%)

Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI---------------- 236
           V     +   L C  N         R           ++  G++                
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63

Query: 237 ---LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
              + I  +  +D GTY CV         KR    EV 
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVT 101

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 17/106 (16%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALSTGGSIYRGN--- 235
           P  +     +   V+ G ++       G      P + W +     LS+    +      
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 236 ----------ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
                      L I +      G Y C            N  + V 
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF-DCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 7/84 (8%)

Query: 290 DAILECHVEAYP---PPAIVWIKDGVQIM----NNQHYSVSHFATSDEFSDTSLRVITIE 342
                  V       PP + W K     +             +  + +     L +   +
Sbjct: 21  SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80

Query: 343 RRQFGQYACKAANKYGSAQKEIEL 366
               G Y C+ + K         L
Sbjct: 81  PAFTGGYRCEVSTKDKFDCSNFNL 104

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 6/78 (7%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
             ++     +   V E  +V L C     P    +    N + +       + +   I  
Sbjct: 5   KAVVFL-EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-----SSQASSYFIDA 58

Query: 242 ITKTDRGTYYCVAQNGVG 259
            T  D G Y C       
Sbjct: 59  ATVNDSGEYRCQTNLSTL 76

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
           P +S  +     + +G+ V L C  N F   + +    N +           + L I N 
Sbjct: 2   PKVS-LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS-----EETNSSLNIVNA 55

Query: 243 TKTDRGTYYCVAQNGVG 259
              D G Y C  Q    
Sbjct: 56  KFEDSGEYKCQHQQVNE 72

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 11/96 (11%)

Query: 194 IVSEGQTVYLYC------YANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKTD 246
            +       L C             P + W +D    L          + L + N+ +  
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKH 69

Query: 247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR 282
           RG Y C A      G +  I   +E    IT+   +
Sbjct: 70  RGNYTCHASYTYL-GKQYPITRVIE---FITLEENK 101

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 14/83 (16%)

Query: 290 DAILECH------VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343
           D  L C        E    P + W KD   ++ +  +               L V+ +  
Sbjct: 16  DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG--------VKDRLIVMNVAE 67

Query: 344 RQFGQYACKAANKYGSAQKEIEL 366
           +  G Y C A+  Y   Q  I  
Sbjct: 68  KHRGNYTCHASYTYLGKQYPITR 90

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANG---FPAPTISWRRDN------SAALSTGGSIY 232
           PP     + +  +V+ G++  + C         + T+   R N      +   +      
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 233 RGNILKIPNITKTDRGTYYCVAQNGVG 259
                      +     + C+A   + 
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLM 87

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 8/96 (8%), Positives = 21/96 (21%), Gaps = 6/96 (6%)

Query: 274 PVITINRPRQGQALQYDAILECHVE---AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE 330
             + +       A+     +EC V          +   +    +        +      +
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPA---PQ 59

Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            +  +             ++C A     S    I  
Sbjct: 60  EATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 6e-05
 Identities = 8/82 (9%), Positives = 17/82 (20%), Gaps = 5/82 (6%)

Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANG---FPAPTISWRRDNSAALSTGGSIYRGN-IL 237
           P  +   +        G+ + L C   G       T+   R                   
Sbjct: 4   PERVE-LAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTT 62

Query: 238 KIPNITKTDRGTYYCVAQNGVG 259
            +          + C  +  + 
Sbjct: 63  TVLVRRDHHGAQFSCRTELDLR 84

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 11/96 (11%)

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPA---IVWIKDGVQIMNNQHYSVSHFATSDE 330
             + +      Q +     L C VE   P A   +V ++   ++                
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEP------- 57

Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
            ++ +  V+        Q++C+          E+  
Sbjct: 58  -AEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 192 SVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGS----IYRGNILKIPNITKTD 246
            V ++EG  V   C     +PA +  W  +                    L I     +D
Sbjct: 13  PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD 72

Query: 247 RGTYYCVAQNGVG 259
            G Y C A + + 
Sbjct: 73  LGNYSCFATSHID 85

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL------------STGGSIYRGNI 236
           S   V + E   V L C  +GF +P + W+ D                       +    
Sbjct: 10  SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69

Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
           +   ++T+ D GTY C+     G      + V++
Sbjct: 70  ITFKSVTREDTGTYTCMVSEEGGNSYG-EVKVKL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD---EFSDTSLRVITIERRQF 346
              L C    +  P + W  D         Y+    A+ +    F  T +   ++ R   
Sbjct: 21  PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT 80

Query: 347 GQYACKAANKYGSAQKEIEL 366
           G Y C  + + G++  E+++
Sbjct: 81  GTYTCMVSEEGGNSYGEVKV 100

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 11/103 (10%)

Query: 88  QTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD------SRFQLTT 137
               L CS       +DD    W       +        +      D       R Q   
Sbjct: 15  SQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG 74

Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-SAEVELIV 179
           DP      + I  +  +D G + C+V    +    +++V L V
Sbjct: 75  DPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
           P + +  P     +  D +L C VE        WI   ++       S    +     ++
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
                            C A N  G A+  +++
Sbjct: 63  ------VTSDLNRKNVTCWAENDVGRAEVSVQV 89

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAALSTGGSIYRGNILKIPNITKTDRG 248
            +  V  G  V L C   G       W       +A            L + N+T     
Sbjct: 10  PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNR 69

Query: 249 TYY-CVAQNGVGR 260
               C A+N VGR
Sbjct: 70  KNVTCWAENDVGR 82

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 17/103 (16%)

Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALSTGGSIY-------------RG 234
           +   V  G+ +              PTI W +     L++    +               
Sbjct: 8   QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 67

Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
             ++I        G Y C            +  +EV  +   T
Sbjct: 68  FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 109

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 275 VITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332
           +I + +P  G  +     A  E  + + P     W   G  +  +    +          
Sbjct: 1   LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIED-----GK 54

Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
              L +   +    G+ + +AAN   +A  +++
Sbjct: 55  KHILILHNCQLGMTGEVSFQAANAKSAANLKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----SIYRGNILKIPNITKTD 246
             V V  G+T +        P     W+       ++         + +IL + N     
Sbjct: 9   YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGM 67

Query: 247 RGTYYCVAQNGVGR 260
            G     A N    
Sbjct: 68  TGEVSFQAANAKSA 81

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 88  QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
           QT  ++C      +      W K  +A     L  S     +   SRF +  DP+   + 
Sbjct: 12  QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFT 71

Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVEL 177
           +++ +++E D+G Y C +    +N VS  V  
Sbjct: 72  VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRF 103

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 6/81 (7%)

Query: 191 RSVIVSEGQTVYL-YCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
           + + V       L           TI W R  +       S    N+        T    
Sbjct: 9   KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVT-----GVTQSTM 63

Query: 250 YYCVAQNGVGRGMKRNIAVEV 270
           + C A N  G    R   V +
Sbjct: 64  FSCEAHNLKGLASSRTATVHL 84

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 69  SQRTPTISYISQEQIKDIAQTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSL 126
           + +     Y  +E      QT D+KC  +++        W  +   +  + L  +   S 
Sbjct: 1   ATKLTEEKYELKE-----GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSK 55

Query: 127 IIHD---SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVS--AEVELIV 179
             H     R  L    +     + +  +Q  D+G+Y+C +             + L+V
Sbjct: 56  NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 191 RSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNI 242
               +S G++ +  C          ISW   N   LS               + L I N 
Sbjct: 8   SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 67

Query: 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
              D G Y CV     G   +  + V++
Sbjct: 68  NIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGN 235
           +++R P I   S        G++ +L CY +GF      +   ++         S    +
Sbjct: 1   MIQRTPKIQVYSRHPA--ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS 58

Query: 236 ------ILKIPNITKTDRGTYYCVAQ 255
                 +L     T T++  Y C   
Sbjct: 59  KDWSFYLLYYTEFTPTEKDEYACRVN 84

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 88  QTADLKCSVQYADD-------YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPE 140
               + C   Y  D         + +      +++                R +L  + +
Sbjct: 16  SCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMD 75

Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNK 170
                L +K+++  D+G Y     IS +N+
Sbjct: 76  HKVCNLLLKDLKPEDSGTYNFRFEISDSNR 105

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 88  QTADLKCSVQYADDYP-------VIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTT 137
               ++CS  Y  D           W +       +    + + +  + +    RF L  
Sbjct: 17  MCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLG 76

Query: 138 DPETSTYILSIKEIQETDAGIYKCEV 163
           DP+T    LSI++ + +DAG Y   +
Sbjct: 77  DPQTKNCTLSIRDARMSDAGRYFFRM 102

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 10/101 (9%)

Query: 79  SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD 138
           SQ+    +                 +   + D   ++E        S             
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL------ 55

Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
            +T +  L+I  +  +D   Y+ E     N   + +  L V
Sbjct: 56  -DTVSGSLTIYNLTSSDEDEYEMESP---NITDTMKFFLYV 92

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 88  QTADLKCS-VQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
              +L     Q  DD   +  +                   +    F++      +   L
Sbjct: 11  HGINLNIPNFQMTDDIDEVRWERG---STLVAEFKRKMKPFLKSGAFEIL-----ANGDL 62

Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
            IK +   D+G Y   V  + N        L +R
Sbjct: 63  KIKNLTRDDSGTYNVTVYST-NGTRILNKALDLR 95

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 92  LKCSVQYADDYPVIWMKMDTAKKMEPL---PISMSGSLIIHDSRFQLTTDPETSTYILSI 148
           L             W K +T    + +     + + +        +       S   L  
Sbjct: 19  LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS---LLF 75

Query: 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
           + I   D G+Y  ++      +  A V   V
Sbjct: 76  QMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.76
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.73
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.72
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.7
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.7
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.69
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.69
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.68
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.67
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.64
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.63
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.63
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.62
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.61
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.6
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.6
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.59
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.59
d2avga1	110	Cardiac myosin binding protein C, different domain	99.59
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.59
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.58
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.58
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.56
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.56
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.55
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.55
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.54
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.54
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.54
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.54
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.53
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.52
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.52
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.51
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.5
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.5
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.49
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.49
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.48
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.48
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.48
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.47
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.47
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.46
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.46
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.46
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.46
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.45
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.45
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.45
d2avga1	110	Cardiac myosin binding protein C, different domain	99.45
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.44
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.44
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.43
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.43
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.42
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.41
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.41
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.41
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.4
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.39
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.39
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.39
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.37
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.36
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.35
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.34
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.34
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.33
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.31
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.31
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.3
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	99.3
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.3
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.29
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.29
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.29
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.28
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	99.26
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.26
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	99.26
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.24
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.24
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.24
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.24
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.24
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.24
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	99.22
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	99.22
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	99.22
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.22
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.22
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.21
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.21
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.21
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.21
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	99.2
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.19
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.19
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	99.17
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	99.17
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.17
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	99.16
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	99.16
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	99.16
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	99.16
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	99.16
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.15
d8faba1	103	Immunoglobulin light chain lambda variable domain,	99.14
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.14
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	99.14
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.13
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.13
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	99.13
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	99.13
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	99.13
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.12
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	99.11
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	99.1
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.09
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	99.08
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	99.08
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	99.08
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	99.07
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	99.06
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	99.06
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	99.06
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	99.05
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	99.05
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	99.05
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.05
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	99.04
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	99.04
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.03
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	99.03
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.03
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	99.03
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	99.02
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	99.02
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.02
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.01
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	99.01
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	99.0
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	99.0
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	99.0
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.99
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.99
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.98
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.98
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.97
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.97
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.97
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.96
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.96
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.96
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.96
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.95
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.95
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.95
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.93
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.92
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.92
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.92
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.9
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.9
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.87
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.85
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.85
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.84
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.84
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.83
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.79
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.79
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.78
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.78
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.77
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.76
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.76
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.73
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.72
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.71
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.71
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.69
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.69
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.69
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.68
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.68
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.68
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.68
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.67
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.66
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.66
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.65
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.65
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.64
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.64
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.64
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.63
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.63
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.62
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.62
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.62
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.61
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.61
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.61
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.6
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.6
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.6
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.59
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.59
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.59
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.59
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.58
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.58
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.58
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.58
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.57
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.57
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.57
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.57
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.57
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.57
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.56
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.56
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.56
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.56
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.55
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.54
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.54
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.54
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.54
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.54
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.54
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.54
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.53
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.53
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.53
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.51
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.51
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.51
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.51
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.51
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	98.51
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.51
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.5
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.5
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.5
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.49
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.49
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.48
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.48
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.48
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.46
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.46
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.44
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.44
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	98.43
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.43
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.43
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.41
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	98.41
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.4
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.4
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	98.39
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	98.38
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.37
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.37
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.36
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.34
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.34
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.34
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.34
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.33
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.32
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.32
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.32
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	98.31
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.31
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.29
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.29
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.28
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.28
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.28
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.28
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.27
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.27
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.26
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.25
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.25
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.25
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.25
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.25
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.23
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.21
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.21
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.21
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.2
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.19
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.18
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.18
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.18
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.17
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.17
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.16
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.16
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.15
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.15
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.15
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.13
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.12
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.12
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.11
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.11
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.11
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.11
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.11
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.11
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.1
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.09
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.09
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.09
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.07
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.06
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.05
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.05
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.05
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.05
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.04
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.03
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	98.03
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.0
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.0
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.0
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.0
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.99
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.99
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.98
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.98
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.97
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.97
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.97
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.96
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.96
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.96
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.95
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.95
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.94
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.94
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.94
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.93
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.93
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.93
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.93
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.92
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.92
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.89
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.89
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.88
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.87
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.87
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.87
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.86
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.85
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.85
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.84
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.84
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.83
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.82
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.79
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.79
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.78
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.77
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.76
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.76
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.75
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.74
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.74
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.73
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.73
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.72
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.7
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.7
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.67
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.67
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.66
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.66
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.65
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.65
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.65
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.63
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.63
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.62
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.58
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.58
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.58
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.56
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.54
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.53
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.53
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.51
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.48
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.47
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.47
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.46
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.45
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.41
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.41
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.4
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.4
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.38
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.37
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.36
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.35
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.33
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.31
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.3
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.3
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.3
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.28
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.27
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.27
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.26
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.26
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.25
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.24
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.23
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.2
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.19
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.18
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.18
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.15

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.2e-19  Score=120.67  Aligned_cols=100  Identities=21%  Similarity=0.238  Sum_probs=84.8

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...+++.+....     ...+|.|.+++.+|+|.|+|.|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a   75 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE-----NGSKLTILAARQEHCGCYTLLV   75 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS-----SEEEEEETTCCTTTCEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEec-----ceeEEEEeeCCcccCEEEEEEE
Confidence            34444566777899999999999999999999999999999888877664321     3467999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeeecCCccC
Q psy16652        354 ANKYGSAQKEIELFDRETQTGDETF  378 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~~~~~~~~~~  378 (384)
                      .|..|..+.++.|.|.+.|.+|...
T Consensus        76 ~N~~G~~~~~~~l~V~~~P~pP~g~  100 (101)
T d2cqva1          76 ENKLGSRQAQVNLTVVDKPDPPAGT  100 (101)
T ss_dssp             ECSSCEEECCEEEEEECSCSCCCCC
T ss_pred             EECCCEEEEEEEEEEEecCCCcCCC
Confidence            9999999999999999988766544

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=3.6e-18  Score=114.10  Aligned_cols=87  Identities=25%  Similarity=0.387  Sum_probs=77.9

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      |.+...+.+..+..|+.+.|.|.+.|.|.|++.|++||.++....++.+         ....|.|.+++.+|.|.|+|.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a   72 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV---------SGGELRFSKLVLEDSGMYQCVA   72 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE---------ETTEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee---------eeeeEEEEeecccCCEEEEEEE
Confidence            5666677788899999999999999999999999999999988777654         3568999999999999999999


Q ss_pred             EeCCcceEEEEEEEEe
Q psy16652        354 ANKYGSAQKEIELFDR  369 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~  369 (384)
                      .|..|....+..|.|+
T Consensus        73 ~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          73 ENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEEE
Confidence            9999999999999886

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=3.5e-18  Score=116.59  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=81.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..     ......|.|.+++.+|+|.|+|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~   75 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-----NGNDYGLTINRVKGDDKGEYTVR   75 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCC-----STTEEEEEESCCCSGGGSCEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEe-----cCCeeEEEeCCCceecCEEEEEE
Confidence            3677777888889999999999999999999999999999998777665432     11345799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeee
Q psy16652        353 AANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |.|..|..+.++.|.|...+
T Consensus        76 a~N~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          76 AKNSYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEETTEEEEEEECCEEECSC
T ss_pred             EEECCCEEEEEEEEEEeecC
Confidence            99999999999999997654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=2.5e-17  Score=112.48  Aligned_cols=94  Identities=21%  Similarity=0.201  Sum_probs=80.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++|+.++..+.+........    ....|.|.+++.+|.|.|+|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED----NVCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccc----eEEEEEeccCccccCEEEEEE
Confidence            5667777777889999999999999999999999999999998877665543221    345799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEee
Q psy16652        353 AANKYGSAQKEIELFDRE  370 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~~  370 (384)
                      |.|..|..+.+..|.|+.
T Consensus        80 a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          80 AINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999999999999875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.73  E-value=2.1e-17  Score=113.83  Aligned_cols=95  Identities=25%  Similarity=0.435  Sum_probs=82.1

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++||.++..+.++.+....    ....+|.|.+++.+|.|.|+|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C   82 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE----EGNCSLTISEVCGDDDAKYTC   82 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT----TCEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEec----CceeeeEecCCCHHhCEEEEE
Confidence            3577777777888899999999999999999999999999999988877664322    235679999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEee
Q psy16652        352 KAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~~  370 (384)
                      .|.|..|....++.|.|..
T Consensus        83 ~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          83 KAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCcEEEEEEEEEEEE
Confidence            9999999999999998864

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.72  E-value=1.1e-17  Score=113.17  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=79.6

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+..+.+.......     ....|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~   76 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS-----STTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEET-----TEEEEECTTBCGGGCEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccc-----cceeeccccccccccEEEEEE
Confidence            577766667788999999999999999999999999999999887776554321     356799999999999999999


Q ss_pred             EEeCCcceEEEEEEEEe
Q psy16652        353 AANKYGSAQKEIELFDR  369 (384)
Q Consensus       353 a~n~~g~~~~~~~l~v~  369 (384)
                      |+|..|+.+.++.|.|+
T Consensus        77 a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          77 VKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEC
Confidence            99999999999999874

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.9e-17  Score=110.99  Aligned_cols=100  Identities=21%  Similarity=0.286  Sum_probs=80.8

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .++|.+...   .....+....|.|.+.|+|.|++.|+++|..+..+.+..+...........+.|.|.+++.+|.|.|+
T Consensus         2 ~~pP~it~~---~~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFL---ESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCC---CCCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEc---CCCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            456665321   12245677789999999999999999999999888777766554444445678999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeeec
Q psy16652        351 CKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      |.|+|..|+.+.++.|.|..+|.
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEEeccCCEEEEEEEEEEEeCCC
Confidence            99999999999999999988774

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.70  E-value=8.8e-17  Score=107.27  Aligned_cols=86  Identities=22%  Similarity=0.398  Sum_probs=72.2

Q ss_pred             cCeEEecCCC-cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPR-QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|.++..+ ++..         ....|.|.+++.+|+|.|+|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~---------~~~~L~i~~v~~~d~G~Y~C   71 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV---------TDSGLVIKGVKNGDKGYYGC   71 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE---------ETTEEEESSCCSTTCEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE---------eeeeEEECCCChhhCEEEEE
Confidence            4666665544 56788999999999999999999999999998643 3333         24569999999999999999


Q ss_pred             EEEeCCcceEEEEEEEE
Q psy16652        352 KAANKYGSAQKEIELFD  368 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v  368 (384)
                      .|.|..|.....+.|.|
T Consensus        72 ~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          72 RATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999999988887

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.1e-16  Score=109.81  Aligned_cols=96  Identities=23%  Similarity=0.444  Sum_probs=74.9

Q ss_pred             ecCeEEecCCC--cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        272 FAPVITINRPR--QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       272 ~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .||.+...+..  ..+..|+.+.|.|.+.|.|.|.+.|+++|..+.............   ...+.|.|.+++.+|+|.|
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y   78 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS---DDSSELTIRNVDKNDEAEY   78 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC---TTSCEEEECSCCGGGCEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEee---cCceEEEeCCCCcccCEEE
Confidence            36666654443  356789999999999999999999999999987654332221111   1357899999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEee
Q psy16652        350 ACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       350 ~C~a~n~~g~~~~~~~l~v~~  370 (384)
                      +|.|+|..|..+..+.|.|..
T Consensus        79 ~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          79 VCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEEE
Confidence            999999999999999998864

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.69  E-value=1e-16  Score=107.56  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=71.3

Q ss_pred             ecCeEEec-CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITIN-RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      ++|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++++.......           ...+..|.|.+++.+|+|.|+
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-----------~~~~~~L~I~~v~~~D~G~Y~   71 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW-----------LSSEPLLHIQNVDFEDEGTYE   71 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC-----------SBSSSEEEECSCCGGGCEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe-----------eeeeeEEEeCCCCccCCEEEE
Confidence            46666654 566778899999999999999999999999765432211           114678999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEe
Q psy16652        351 CKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~  369 (384)
                      |.|+|..|..+.++.|.|.
T Consensus        72 C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999999999999885

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-16  Score=110.11  Aligned_cols=101  Identities=21%  Similarity=0.336  Sum_probs=77.4

Q ss_pred             EEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      |.++|.+.....   ...+....|.|.+.|+|.|++.|++||.++..+.+......... ....+.|.|.+++.+|+|.|
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y   77 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EISEGCLLFNKPTHYNNGNY   77 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS-SEEEEEEEEESCCGGGCEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeec-ccceEEEEEeecccccceEE
Confidence            456666532211   22344566889999999999999999999987776654433322 22456799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEeeeecC
Q psy16652        350 ACKAANKYGSAQKEIELFDRETQTG  374 (384)
Q Consensus       350 ~C~a~n~~g~~~~~~~l~v~~~~~~  374 (384)
                      +|.|+|..|..+.++.|.|..+|.+
T Consensus        78 ~C~a~N~~G~~~~~~~v~V~~~P~P  102 (105)
T d1wwca_          78 TLIAKNPLGTANQTINGHFLKEPFP  102 (105)
T ss_dssp             EEEEEETTEEEEEEEEECCSCCCCC
T ss_pred             EEEEEcCCCEEEEEEEEEEEeCCCC
Confidence            9999999999999999999887654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.67  E-value=1.9e-17  Score=111.31  Aligned_cols=87  Identities=15%  Similarity=0.317  Sum_probs=75.0

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      .|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+....     ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-----YKSTFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECS-----SEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeec-----ceeEEeecCCCHHHCEEEEEEEEECCC
Confidence            456677899999999999999999999999999999877766544321     457799999999999999999999999


Q ss_pred             ceEEEEEEEEee
Q psy16652        359 SAQKEIELFDRE  370 (384)
Q Consensus       359 ~~~~~~~l~v~~  370 (384)
                      ..+.++.|.|++
T Consensus        80 ~~~~~~~l~V~e   91 (91)
T d1tnna_          80 KQEAEFTLTIQK   91 (91)
T ss_dssp             BCCEEEEEECCC
T ss_pred             EEEEEEEEEEEC
Confidence            999999998863

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=107.10  Aligned_cols=82  Identities=20%  Similarity=0.356  Sum_probs=69.2

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ..+..|+.+.|.|.+.|+|.|.+.|++||.++..+.+.......    ....+|.|.+++.+|+|.|+|.|+|..|..+.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   90 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINH   90 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEc----CCcEEEEECCCCcccCEEEEEEEEECCCEEEE
Confidence            35678999999999999999999999999999766544332211    13568999999999999999999999999999


Q ss_pred             EEEEEE
Q psy16652        363 EIELFD  368 (384)
Q Consensus       363 ~~~l~v  368 (384)
                      ++.|.|
T Consensus        91 ~~~l~V   96 (97)
T d3dara1          91 TYHLDV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999887

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=100.32  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=66.9

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      |.+...+....+..|+.+.|.|.+.|.|.| +|.|++||..+....              ...+.|.....+|+|.|+|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~--------------~~~~~l~~~~~~d~G~Y~C~   67 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA--------------PSPSVLNVTGVTQSTMFSCE   67 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE--------------ESSEEEEECCCSSCEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC--------------CcceEEecCCccccEEEEEE
Confidence            667777888889999999999999999988 899999999886432              23456667777899999999


Q ss_pred             EEeCCcceE-EEEEEEEe
Q psy16652        353 AANKYGSAQ-KEIELFDR  369 (384)
Q Consensus       353 a~n~~g~~~-~~~~l~v~  369 (384)
                      |+|..|... ..+.|.|+
T Consensus        68 A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          68 AHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EEcCCCcEEEEEEEEEEC
Confidence            999999654 35777663

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.2e-15  Score=102.50  Aligned_cols=90  Identities=18%  Similarity=0.280  Sum_probs=73.7

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      +.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+..........      ..+++|.|.+++.+|+|.|+|.|
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a   75 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV------LSNNYLQIRGIKKTDEGTYRCEG   75 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE------CTTSCEEETTCCGGGCEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeee------eeeeeEEECCCCHHhCEEEEEEE
Confidence            456667778889999999999999999999999999999997665544332      13457999999999999999999


Q ss_pred             EeCCcceEEEEEEEEe
Q psy16652        354 ANKYGSAQKEIELFDR  369 (384)
Q Consensus       354 ~n~~g~~~~~~~l~v~  369 (384)
                      .|..|.......+.|.
T Consensus        76 ~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          76 RILARGEINFKDIQVI   91 (92)
T ss_dssp             EEGGGTEEEEEEEEEE
T ss_pred             EECcCCEEEEEEEEEE
Confidence            9998877666666653

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=1.2e-15  Score=103.54  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.......+...   ......+|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH---NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESC---SSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeee---eecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            4567788999999999999999999999999999976655443321   1224568999999999999999999999998


Q ss_pred             eE-EEEEEEE
Q psy16652        360 AQ-KEIELFD  368 (384)
Q Consensus       360 ~~-~~~~l~v  368 (384)
                      .. .++.|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            64 4678876

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=107.62  Aligned_cols=89  Identities=18%  Similarity=0.294  Sum_probs=74.1

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C  351 (384)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......       .......|.|.+++.+|.| .|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~-------~~~~~~~L~i~~~~~~d~G~~Y~C   74 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-------GGLPSLGLTLANVTSDLNRKNVTC   74 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC-------CCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee-------eeccceeEEEccccccccceEEEE
Confidence            5777778888899999999999999999999999999987764332211       1124567999999999999 6999


Q ss_pred             EEEeCCcceEEEEEEEE
Q psy16652        352 KAANKYGSAQKEIELFD  368 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v  368 (384)
                      .|.|..|..+.++.|.|
T Consensus        75 ~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          75 WAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CCEETTEECCEEECCCC
T ss_pred             EEEcCCCEEEEEEEEEE
Confidence            99999999999988876

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.8e-16  Score=101.98  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +...+.+|+.++|.|.+.|.|.|.+.|++++..+..               ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~---------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~   71 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------GGKTLSVSQLELQDSGTWTCTVLQNQKKV   71 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE---------------ESSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeeccccee---------------eeeeeeeeecccccccEEEEEEEeCCCEE
Confidence            345688999999999999999999999998754421               35679999999999999999999999999


Q ss_pred             EEEEEEEEeeee
Q psy16652        361 QKEIELFDRETQ  372 (384)
Q Consensus       361 ~~~~~l~v~~~~  372 (384)
                      +..+.|.|.+.|
T Consensus        72 ~~~~~v~V~~~~   83 (84)
T d2nxyb2          72 EFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEEEECEECCC
T ss_pred             EEEEEEEEEecC
Confidence            999999998765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6e-16  Score=103.98  Aligned_cols=88  Identities=20%  Similarity=0.310  Sum_probs=70.7

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      |.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+....   ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecc---cCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            34456789999999999999999999999999999777655443221   123467999999999999999999999997


Q ss_pred             e-EEEEEEEEee
Q psy16652        360 A-QKEIELFDRE  370 (384)
Q Consensus       360 ~-~~~~~l~v~~  370 (384)
                      . +..+.|.|.+
T Consensus        80 ~~S~~~~l~V~G   91 (91)
T d1rhfa1          80 EISQPVWLTVEG   91 (91)
T ss_dssp             EECCCEEEEEEC
T ss_pred             EEEEEEEEEEEC
Confidence            5 4568888763

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.8e-15  Score=100.11  Aligned_cols=96  Identities=19%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+              ....++.+..  .....+|.|.+++
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l--------------~~~~~~~~~~--~~~~~~L~I~~~~   64 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI--------------QESEHMKVEN--SENGSKLTILAAR   64 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBC--------------CCSSSEEEEE--CSSEEEEEETTCC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceee--------------ccCCcEEEEE--ecceeEEEEeeCC
Confidence            44556677888999999999999999888899999988763              3345666655  4456789999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPII  185 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  185 (384)
                      .+|+|.|+|.+.|. .+..+..+.|.|...|..
T Consensus        65 ~~D~G~Y~C~a~N~-~G~~~~~~~l~V~~~P~p   96 (101)
T d2cqva1          65 QEHCGCYTLLVENK-LGSRQAQVNLTVVDKPDP   96 (101)
T ss_dssp             TTTCEEEEEEEECS-SCEEECCEEEEEECSCSC
T ss_pred             cccCEEEEEEEEEC-CCEEEEEEEEEEEecCCC
Confidence            99999999999854 456778889999877643

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=100.63  Aligned_cols=79  Identities=14%  Similarity=0.144  Sum_probs=65.8

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+........        ...+.|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--------~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~   82 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNE--------GTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEE--------TTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeee--------cCCcEEEEecccccccceEEEEEEeCCCEEEE
Confidence            3456899999999999999999999998876643322111        14568999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy16652        363 EIELFDR  369 (384)
Q Consensus       363 ~~~l~v~  369 (384)
                      ++.|.|.
T Consensus        83 ~~~v~V~   89 (90)
T d1vcaa2          83 GIQVEIY   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.6e-15  Score=100.37  Aligned_cols=80  Identities=16%  Similarity=0.299  Sum_probs=67.1

Q ss_pred             CCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        280 RPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++..+.......          ..+.|+|.+++.+|+|.|+|.|.|..|
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD----------FNGILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE----------ETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe----------eceEEEEecCCcccCEEEEEEEEECCC
Confidence            3445688999999999997 67888999999988775543211          356899999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy16652        359 SAQKEIELFDR  369 (384)
Q Consensus       359 ~~~~~~~l~v~  369 (384)
                      ..+.++.|.|+
T Consensus        79 ~~~~~~~l~V~   89 (89)
T d1gl4b_          79 MDQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999999874

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.9e-15  Score=102.84  Aligned_cols=92  Identities=16%  Similarity=0.249  Sum_probs=70.7

Q ss_pred             CcccccCCcEE---EEEEEeccCCCeEEEEECCEEecCCCceeeeeeecc--CccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        282 RQGQALQYDAI---LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS--DEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       282 ~~~~~~g~~~~---l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      ...+..|..+.   +.|.+.|+|.|.+.|++||.++..+.+.........  .....+.|.|.++..+|.|.|+|.|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            33444454444   556899999999999999999987766554432221  2223466999999999999999999999


Q ss_pred             CcceEEEEEEEEeeeec
Q psy16652        357 YGSAQKEIELFDRETQT  373 (384)
Q Consensus       357 ~g~~~~~~~l~v~~~~~  373 (384)
                      .|...+++.|.|..+|.
T Consensus        86 ~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          86 FGQASASIMAAFMDNPF  102 (107)
T ss_dssp             TEEEEEEEEECCCSCTT
T ss_pred             CCEEEEEEEEEEEcCCC
Confidence            99999999999988773

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-16  Score=103.04  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=62.2

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      +....+.+|+.+.|.|.+.|.|.|++.|+++|..+....                  .+..++.+|+|.|+|.|+|..|+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~------------------~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT------------------SCEECCGGGCEEEEEEEEETTEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee------------------eeeccccCCCCEEEEEEEcCCCE
Confidence            345677889999999999999999999999987664322                  23457789999999999999999


Q ss_pred             eEEEEEEEEeee
Q psy16652        360 AQKEIELFDRET  371 (384)
Q Consensus       360 ~~~~~~l~v~~~  371 (384)
                      .+..+.|.|..|
T Consensus        73 ~~~~~~l~V~~P   84 (84)
T d2oz4a3          73 VTREVTVNVLSP   84 (84)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEECC
Confidence            999999998754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=101.27  Aligned_cols=97  Identities=14%  Similarity=0.227  Sum_probs=73.4

Q ss_pred             eEEecCCCcccccCCcEEEEEEEeccC---CCeEEEEECCEEecCC---Cceeeeee-eccCccccceEEEeecCCCCCe
Q psy16652        275 VITINRPRQGQALQYDAILECHVEAYP---PPAIVWIKDGVQIMNN---QHYSVSHF-ATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       275 ~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      .+...|....+..|+.++|.|.+.|.|   .|.|.|++++......   .+...... ..........|.|.+++.+|+|
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            455566778889999999999999988   5689999987543222   22222221 1222223567999999999999


Q ss_pred             EEEEEEEeCCcceEEEEEEEEeee
Q psy16652        348 QYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       348 ~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .|+|.|+|..|..+.++.|.|.+.
T Consensus        86 ~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          86 GYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEEEECCCeEEEEEEEEEEec
Confidence            999999999999999999999764

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=5.9e-15  Score=98.13  Aligned_cols=81  Identities=26%  Similarity=0.443  Sum_probs=71.5

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+..|+++.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.|.|..|.. .....|.
T Consensus         8 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   86 (89)
T d1cs6a4           8 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELT   86 (89)
T ss_dssp             CCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEE-EEEEEEE
Confidence            455778999999999999999999999999999888777777778899999999999999999999998875 5667777


Q ss_pred             EE
Q psy16652        270 VE  271 (384)
Q Consensus       270 v~  271 (384)
                      |+
T Consensus        87 V~   88 (89)
T d1cs6a4          87 VQ   88 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.6e-15  Score=100.41  Aligned_cols=92  Identities=26%  Similarity=0.390  Sum_probs=71.6

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEe----cCC--CceeeeeeeccCccccceEEEeecC-CC
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQI----MNN--QHYSVSHFATSDEFSDTSLRVITIE-RR  344 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~  344 (384)
                      ||.+...+....+.+|+.+.|.|.+.|.|++ .+.|++++...    ...  .++.+..  .   .....|.|.+++ .+
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~--~---~~~~~L~I~~v~~~~   76 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--S---QGRSELHIENLNMEA   76 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--E---TTEEEEEECSCCTTT
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEe--C---CCEEEEEEecccccc
Confidence            6778777777888999999999999999988 79999975322    211  2222221  1   135679999998 47


Q ss_pred             CCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        345 QFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       345 d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      |+|.|+|.|.|..|+.+.++.|.|+
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999999999885

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.7e-15  Score=103.17  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=74.9

Q ss_pred             ecCCCcccccCCcEEEEEEEeccC---CCeEEEEECCEEe---cCCCceeeeeeec-cCccccceEEEeecCCCCCeEEE
Q psy16652        278 INRPRQGQALQYDAILECHVEAYP---PPAIVWIKDGVQI---MNNQHYSVSHFAT-SDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       278 ~~~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      ..|.+..+.+|+.++|.|.+.|.|   .|.|.|++++...   ....++....... ........|.|.+++.+|+|.|+
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            346677889999999999999988   5799999987543   2233443333222 22223457999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeeecCC
Q psy16652        351 CKAANKYGSAQKEIELFDRETQTGD  375 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~~~~~~~  375 (384)
                      |.|.|..|..+.++.|.|.+++..+
T Consensus        85 C~a~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          85 CEVTYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEEECSSCEEEECCEEEEECCCCSC
T ss_pred             EEEEeCCCEEEEEEEEEEEcCCCcC
Confidence            9999999999999999998776543

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-15  Score=99.57  Aligned_cols=79  Identities=16%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             CCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ....+.+|+.+.|.|.+. |.|.|.|.|++.+..+..   ....       ...+.|+|.+++.+|+|.|+|.|.|..|+
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~~~~-------~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---VQSD-------TGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---EEEE-------SSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---eecc-------CceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            345677999999999985 789999999987765421   1111       14578999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                      .+.++.|.|.
T Consensus        81 ~~~s~~l~Vy   90 (90)
T d1gsma1          81 FQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9999999873

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=8.7e-15  Score=97.38  Aligned_cols=80  Identities=28%  Similarity=0.515  Sum_probs=66.6

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      +.....+.+|+++.|.|.+.|.|.|.+.|++++..+.. ......+..|.|.++..+|+|.|+|.|.|..|.. ...+.|
T Consensus         9 p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l   86 (89)
T d1biha4           9 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLV   86 (89)
T ss_dssp             CCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEE
T ss_pred             CCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEeeeeEEECCCChhhCEEEEEEEEECCCEE-EEEEEE
Confidence            34556788999999999999999999999999987754 3455567789999999999999999999998875 555666


Q ss_pred             EE
Q psy16652        269 EV  270 (384)
Q Consensus       269 ~v  270 (384)
                      .|
T Consensus        87 ~V   88 (89)
T d1biha4          87 QV   88 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=5.4e-15  Score=100.43  Aligned_cols=94  Identities=21%  Similarity=0.235  Sum_probs=73.9

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      .|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+              ..+.++.+..  ......|.|.++
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l--------------~~~~~~~~~~--~~~~~~L~I~~~   64 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL--------------KQSVKYMKRY--NGNDYGLTINRV   64 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEEC--------------CSBTTBBCCC--STTEEEEEESCC
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecc--------------ceeeEEEEEe--cCCeeEEEeCCC
Confidence            377888888999999999999999999999999999977642              2234444443  455678999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      +.+|+|.|+|.+.|.. +..+..+.|.|...
T Consensus        65 ~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~   94 (97)
T d1koaa1          65 KGDDKGEYTVRAKNSY-GTKEEIVFLNVTRH   94 (97)
T ss_dssp             CSGGGSCEEEEEEETT-EEEEEEECCEEECS
T ss_pred             ceecCEEEEEEEEECC-CEEEEEEEEEEeec
Confidence            9999999999998654 44566677777643

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=3.8e-15  Score=101.17  Aligned_cols=89  Identities=19%  Similarity=0.344  Sum_probs=68.0

Q ss_pred             ecCeEEecCCCcccccC---CcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        272 FAPVITINRPRQGQALQ---YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      ++|.+...+....+..|   +.+.|.|.+.|.|.|.+.|++||..+..........      .....|.|..++.+|+|.
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~------~~~~~l~i~~~~~~d~G~   76 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL------VAGDLVISNPVKAKDAGS   76 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE------ETTEEEEESCCHHHHCEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEe------eeeeEEEEecccccCCEE
Confidence            46777776766655554   789999999999999999999999997665443332      124557778888999999


Q ss_pred             EEEEEEeCCcceEE-EEEE
Q psy16652        349 YACKAANKYGSAQK-EIEL  366 (384)
Q Consensus       349 Y~C~a~n~~g~~~~-~~~l  366 (384)
                      |+|.|.|..|...+ .+.|
T Consensus        77 Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          77 YQCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEEEETTEEEECCCEEE
T ss_pred             EEEEEEECCCEEEEEEEEE
Confidence            99999999997643 4544

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.56  E-value=9.1e-15  Score=101.95  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             cCeEEec-CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC----CCceeeee----eeccCccccceEEEeecCC
Q psy16652        273 APVITIN-RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN----NQHYSVSH----FATSDEFSDTSLRVITIER  343 (384)
Q Consensus       273 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~l~i~~~~~  343 (384)
                      +|.+... |.+..+.+|+.+.|.|.+.|.|.|.|.|++++.....    ........    ...........|.|.+++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5666543 5678899999999999999999999999987644321    11111111    0111122356799999999


Q ss_pred             CCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652        344 RQFGQYACKAANKYGSAQKEIELFD  368 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~g~~~~~~~l~v  368 (384)
                      +|.|.|+|.|.|..|...+++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999999987

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=4.1e-15  Score=100.51  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=67.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++||..+..........      ...++|.|.+++.+|+|.|+|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C   75 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR------KDEGSLVFLRPQASDEGHYQC   75 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC------TTSCCEEESSCCGGGCEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec------ccceEEEEeccChhcCeEEEE
Confidence            4667667777888999999999999999876 799999999986554322211      135679999999999999999


Q ss_pred             EEEeCCcceEE
Q psy16652        352 KAANKYGSAQK  362 (384)
Q Consensus       352 ~a~n~~g~~~~  362 (384)
                      .|.|..|+..+
T Consensus        76 ~a~N~~G~~~s   86 (94)
T d1biha1          76 FAETPAGVASS   86 (94)
T ss_dssp             EEEETTEEEEC
T ss_pred             EEEeCCCEEEE
Confidence            99999997653

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.55  E-value=9.5e-15  Score=96.74  Aligned_cols=79  Identities=16%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             CCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        280 RPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ++...+.+|+.++|.|.+.+. |.+.+.|+++|..+....             ....|.|..++.+|+|.|+|.|.|..|
T Consensus         7 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~-------------~~~~l~i~~v~~~dsG~Y~C~a~n~~g   73 (88)
T d2fcba2           7 TPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR-------------SDPNFSIPQANHSHSGDYHCTGNIGYT   73 (88)
T ss_dssp             CSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES-------------SCCEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             CCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc-------------cccccccCccCHHHCCeEEEEEEeCCC
Confidence            344557899999999999754 556899999998774322             356799999999999999999999999


Q ss_pred             ceE-EEEEEEEeee
Q psy16652        359 SAQ-KEIELFDRET  371 (384)
Q Consensus       359 ~~~-~~~~l~v~~~  371 (384)
                      ... ..+.|.|++|
T Consensus        74 ~~~S~~v~l~V~~P   87 (88)
T d2fcba2          74 LYSSKPVTITVQAP   87 (88)
T ss_dssp             EEECCCEEEEECCC
T ss_pred             CEEeeeEEEEEeCC
Confidence            764 5678888765

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=1.2e-14  Score=97.84  Aligned_cols=91  Identities=23%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.|..++.+..+.+|+++.|.|.+.+.|.+.+.|++++...              ....++.+..  ......|.|.++
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i--------------~~~~~~~~~~--~~~~~~L~I~~~   65 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA--------------ALAPELLVDA--KSSTTSIFFPSA   65 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSC--------------BCSTTSEEEE--ETTEEEEECTTB
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeec--------------eeeeeeeecc--cccceeeccccc
Confidence            577777888889999999999999999999999999988653              2334454444  345678999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +.+|+|.|+|.+.|.. |..+..+.|.|
T Consensus        66 ~~~D~G~Y~c~a~N~~-G~~~~~~~l~V   92 (93)
T d1wiua_          66 KRADSGNYKLKVKNEL-GEDEAIFEVIV   92 (93)
T ss_dssp             CGGGCEEEEEEEEETT-EEEEEEEEEEE
T ss_pred             cccccEEEEEEEEECC-CEEEEEEEEEE
Confidence            9999999999998654 45666677766

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.6e-15  Score=102.73  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             CCCcccccCCcEEEEEEEeccC-CCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYP-PPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      +....+..|+.+.|.|.+.|.| .|.+.|++++..+.... +....... ........|.|.+++.+|+|.|+|.|.|..
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-EKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEE-CSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEe-cCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            4445788999999999999998 48999999886653222 22221111 122234569999999999999999999999


Q ss_pred             cceE-EEEEEEEee
Q psy16652        358 GSAQ-KEIELFDRE  370 (384)
Q Consensus       358 g~~~-~~~~l~v~~  370 (384)
                      |... .++.|.|.+
T Consensus        89 G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          89 NLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEECCCEEEEEEC
T ss_pred             CeEEEEEEEEEEEE
Confidence            9865 468888765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=1.5e-14  Score=96.77  Aligned_cols=86  Identities=31%  Similarity=0.490  Sum_probs=68.5

Q ss_pred             CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652        183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM  262 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  262 (384)
                      |.+....+....+.+|+++.|.|.+.|.|.|.+.|++++.....  .....+..|.|.+++.+|+|.|+|.|.|..|.. 
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-   81 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-   81 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE-
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce--EeeeeeeEEEeCCCCccCCEEEEEEEEECCCEE-
Confidence            33433445677899999999999999999999999997765432  223356789999999999999999999999875 


Q ss_pred             eeEEEEEEE
Q psy16652        263 KRNIAVEVE  271 (384)
Q Consensus       263 ~~~~~l~v~  271 (384)
                      +..+.|.|+
T Consensus        82 ~~~~~l~V~   90 (91)
T d1cs6a3          82 TYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            666777765

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.5e-14  Score=97.07  Aligned_cols=89  Identities=16%  Similarity=0.262  Sum_probs=67.4

Q ss_pred             EecCCCcccccCCcEEEEEEEeccCC-CeEEEEE-CCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652        277 TINRPRQGQALQYDAILECHVEAYPP-PAIVWIK-DGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA  353 (384)
Q Consensus       277 ~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  353 (384)
                      .+.|....+..|+.+.|.|.+.|.|+ +.+.|++ +|..+.. ..++......    ...++|.|.+++.+|+|.|+|.|
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a   79 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVV   79 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec----CcceEEEcccCchhhceEEEEEE
Confidence            34556677889999999999999885 6999998 4555433 3444443322    13567999999999999999999


Q ss_pred             EeCCcce-EEEEEEEEe
Q psy16652        354 ANKYGSA-QKEIELFDR  369 (384)
Q Consensus       354 ~n~~g~~-~~~~~l~v~  369 (384)
                      +|..|.. ++++.|.|.
T Consensus        80 ~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          80 TAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EETTTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEEEE
Confidence            9999975 456787775

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-14  Score=97.76  Aligned_cols=88  Identities=23%  Similarity=0.323  Sum_probs=67.7

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      |.++.+.+|+++.|.|.+.+.|.+.+.|++++...              ....+..+..........|.|.+++.+|+|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l--------------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   68 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVV--------------QNLDQLYIPVSEQHWIGFLSLKSVERSDAGR   68 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEEC--------------CSSEEEEEEEETTEEEEEEEESSCCGGGCEE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeeccc--------------ccceeeeeeecccCceeeEEECCCCcccCEE
Confidence            56777899999999999999999999999977542              1222333333334456689999999999999


Q ss_pred             EEEEEEEccCcceeeeEEEEEe
Q psy16652        159 YKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       159 Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      |+|.+.|..+...+..+.|.|.
T Consensus        69 Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          69 YWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EEEEESSCTTCEECCCEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEEE
Confidence            9999987666556777888774

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=8.2e-15  Score=99.30  Aligned_cols=85  Identities=18%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ..+..+.+|+.+.|.|.+.+ +++.+.|+++|..+....+.....       ...+|.|.+++.+|.|.|+|.|.|..|.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ-------NNSILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET-------TTTEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC-------CceEEEEeccchhhceEEEEEEEeCCCC
Confidence            34566889999999999876 668999999999998887776543       4578999999999999999999999998


Q ss_pred             eE-EEEEEEEeeee
Q psy16652        360 AQ-KEIELFDRETQ  372 (384)
Q Consensus       360 ~~-~~~~l~v~~~~  372 (384)
                      .. ..+.|.|..+|
T Consensus        82 ~~S~~~~L~V~~~P   95 (96)
T d1l6za2          82 RRSNSIKLDIIFDP   95 (96)
T ss_dssp             EECCCCEEEECCSC
T ss_pred             eEEEeEEEEEEcCC
Confidence            75 45888887665

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.54  E-value=2.3e-14  Score=98.22  Aligned_cols=95  Identities=25%  Similarity=0.398  Sum_probs=75.4

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++...              ..+.++.+... ..+.++|.|.
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i--------------~~~~~~~~~~~-~~~~~~L~I~   70 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV--------------KESRHFQIDYD-EEGNCSLTIS   70 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCSSSEEEEEC-TTCEEEEEES
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccc--------------cceeeEeEEEe-cCceeeeEec
Confidence            34677888888899999999999999999898999999987652              33455555443 3456789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +++.+|+|.|+|.+.|.. |..+..+.|.|.
T Consensus        71 ~~~~~D~G~Y~C~a~N~~-G~~~~~~~L~V~  100 (102)
T d1fhga_          71 EVCGDDDAKYTCKAVNSL-GEATCTAELLVE  100 (102)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             CCCHHhCEEEEEEEEECC-cEEEEEEEEEEE
Confidence            999999999999998655 456667777764

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.3e-14  Score=97.91  Aligned_cols=94  Identities=22%  Similarity=0.270  Sum_probs=70.6

Q ss_pred             CeEEecCC-CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeec-------cCccccceEEEeecCCCC
Q psy16652        274 PVITINRP-RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT-------SDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       274 p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d  345 (384)
                      |.+..+.. ...+..|+.+.|.|.+.|.|.|.+.|+++|..+.............       ......+.|+|..++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            44444332 2457789999999999999999999999999987654333222111       111123579999999999


Q ss_pred             Ce-EEEEEEEeCCcceEEEEEEE
Q psy16652        346 FG-QYACKAANKYGSAQKEIELF  367 (384)
Q Consensus       346 ~G-~Y~C~a~n~~g~~~~~~~l~  367 (384)
                      .| .|+|.|.|..|..++.+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999999999886

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-15  Score=107.41  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             ecCeEEe-----cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeee---------------------
Q psy16652        272 FAPVITI-----NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF---------------------  325 (384)
Q Consensus       272 ~~p~~~~-----~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---------------------  325 (384)
                      +||.+..     .+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...........                     
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            4666543     23346688899999999999999999999998766643321111000                     


Q ss_pred             ---eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652        326 ---ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE  370 (384)
Q Consensus       326 ---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  370 (384)
                         ..........|.|.+++.+|+|.|+|.|.|..|+.++++.|.|.+
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence               000011345799999999999999999999999999999998853

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=95.75  Aligned_cols=79  Identities=11%  Similarity=0.207  Sum_probs=62.7

Q ss_pred             cCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        279 NRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      .++...+.+|+.++|.|.+.+. |.+.+.|++||..+....             ....|.|.+++.+|+|.|+|.|.|..
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~-------------~~~~l~I~~v~~~dsG~Y~C~a~n~~   74 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------------HNSDFHIPKATLKDSGSYFCRGLVGS   74 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec-------------cccccEECccceeccceEEEEEEeCC
Confidence            3444557899999999999754 555899999998774321             35679999999999999999999999


Q ss_pred             cceE-EEEEEEEee
Q psy16652        358 GSAQ-KEIELFDRE  370 (384)
Q Consensus       358 g~~~-~~~~l~v~~  370 (384)
                      |... ..+.|.|++
T Consensus        75 ~~~~S~~v~itV~E   88 (89)
T d1fnla2          75 KNVSSETVNITITQ   88 (89)
T ss_dssp             EEEECCCEEEEEEC
T ss_pred             CCeEEeeEEEEEEe
Confidence            8764 467787765

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=3e-14  Score=96.87  Aligned_cols=94  Identities=19%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++...              ....++..... ..+.+.|.|.+
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i--------------~~~~~~~~~~~-~~~~~~L~I~~   67 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI--------------ERSDRIYWYWP-EDNVCELVIRD   67 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEEEEEE-ETTEEEEEECS
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEE--------------eeeeeeEEEec-cceEEEEEecc
Confidence            4678888888999999999999999999999999999977542              22233322221 34567899999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      ++..|+|.|+|.+.|.. |..+....|.|.
T Consensus        68 ~~~~D~G~Y~c~a~N~~-G~~~~~~~L~V~   96 (98)
T d1g1ca_          68 VTGEDSASIMVKAINIA-GETSSHAFLLVQ   96 (98)
T ss_dssp             CCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             CccccCEEEEEEEEECC-cEEEEEEEEEEE
Confidence            99999999999998654 456667777775

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=2.3e-14  Score=97.11  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=65.5

Q ss_pred             eCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      .+.+..+.+|+++.|.|.+.+.|.+.+.|++++....              ...+..+.........+|.|.+++.+|+|
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~--------------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   74 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVN--------------GNPEDRITRHNRTSGKRLLFKTTLPEDEG   74 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECC--------------CCTTSSEESCSSSTTSEEEESSCCGGGCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeecc--------------ccceeeeeeeeecCCCEEEEEeccccccE
Confidence            3577889999999999999999988999999876521              11122222222333457999999999999


Q ss_pred             eEEEEEEEccCcceeeeEEEEE
Q psy16652        158 IYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       158 ~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .|+|.+.|..+...+..+.|.|
T Consensus        75 ~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          75 VYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEE
T ss_pred             EEEEEEEECCCcEEEEEEEEEE
Confidence            9999998776655666777776

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.1e-14  Score=94.45  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             CCCcccccCCcEEEEEEEeccC-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        280 RPRQGQALQYDAILECHVEAYP-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ++...+.+|+.++|.|.+.+.+ +..+.|++||..+....             ....|.|.+++.+|+|.|.|.|.|..|
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~i~~~~~~dsG~Y~C~a~n~~~   73 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------ENHNISITNATVEDSGTYYCTGKVWQL   73 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------CSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-------------ccceEEEeeeeeecCcEEEEEEEeCCC
Confidence            3445578999999999997754 44899999998885432             356799999999999999999999988


Q ss_pred             ceE-EEEEEEEeeee
Q psy16652        359 SAQ-KEIELFDRETQ  372 (384)
Q Consensus       359 ~~~-~~~~l~v~~~~  372 (384)
                      ... ..+.|.|.++|
T Consensus        74 ~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          74 DYESEPLNITVIKAP   88 (89)
T ss_dssp             EEECCCEEEEEECSC
T ss_pred             CeEeeeEEEEEEeCC
Confidence            754 55788888765

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.3e-15  Score=103.22  Aligned_cols=97  Identities=20%  Similarity=0.356  Sum_probs=72.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      ||.+........+.+|+.++|.|.+ .|.|.+.+.|++++..+....+........  ......+.|.|.+++.+|.|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4544444445667889999999998 589999999999999887665443322111  1122356799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEe
Q psy16652        350 ACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       350 ~C~a~n~~g~~~~~~~l~v~  369 (384)
                      +|.|.|..|+...+..|++.
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEECCCceEEEEEEEEE
Confidence            99999999998776555543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.9e-14  Score=100.40  Aligned_cols=89  Identities=24%  Similarity=0.445  Sum_probs=64.6

Q ss_pred             cccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeecc---CccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        283 QGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATS---DEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+..............   .......|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            457889999999998 4899999999999998866543332221111   112356799999999999999999999999


Q ss_pred             ceEE--EEEEEEeee
Q psy16652        359 SAQK--EIELFDRET  371 (384)
Q Consensus       359 ~~~~--~~~l~v~~~  371 (384)
                      +...  .++|.|.+.
T Consensus        92 ~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          92 TAMRSEAAHMDAVEL  106 (110)
T ss_dssp             CCEECCCEEEEEESS
T ss_pred             cEEEEEEEEEEEEec
Confidence            8765  456666543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.5e-16  Score=108.66  Aligned_cols=103  Identities=23%  Similarity=0.385  Sum_probs=78.5

Q ss_pred             EEEEecCeEEecCCCcccccCCcEEEEEEEeccC-CCeEEEEECCEEecCCC--ceeeeeeeccCccccceEEEeecCCC
Q psy16652        268 VEVEFAPVITINRPRQGQALQYDAILECHVEAYP-PPAIVWIKDGVQIMNNQ--HYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       268 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      |.|..||.+.. +....+.+|+.+.|.|.+.+.| .+.+.|++++..+....  ++.+...... ....+.|.|.+++.+
T Consensus         2 L~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~-~~~~s~L~I~~v~~~   79 (115)
T d2crya1           2 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-EGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEET-TEEEEEEECTTCCHH
T ss_pred             eEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccc-cCcEEEEEEeccchh
Confidence            55777888764 4556788999999999999865 45799999999886553  3333222211 112357999999999


Q ss_pred             C-CeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652        345 Q-FGQYACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       345 d-~G~Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      | +|.|+|.|.|..|+.+..+.|.|++.+
T Consensus        80 D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             cCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            8 699999999999999999999987654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=9.3e-14  Score=92.61  Aligned_cols=81  Identities=30%  Similarity=0.472  Sum_probs=66.8

Q ss_pred             CCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        189 STRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      .+....+.+|+++.|.|.+. +.|.+.+.|++++..+... .....+..|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~   85 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTAT   85 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc-ccEeeceEEEEecCCcccCEEEEEEEEECCCEE-EEEEE
Confidence            35567789999999999996 6778899999988776554 344567789999999999999999999998865 66677


Q ss_pred             EEEE
Q psy16652        268 VEVE  271 (384)
Q Consensus       268 l~v~  271 (384)
                      |.|+
T Consensus        86 l~V~   89 (89)
T d1gl4b_          86 LHVQ   89 (89)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7663

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.49  E-value=2.4e-14  Score=95.81  Aligned_cols=88  Identities=22%  Similarity=0.258  Sum_probs=68.0

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      ...|.++.+.+|+++.|.|.+.+.|.+.+.|++++..+              ....++.+..  ......|.|.+++.+|
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D   66 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL--------------STSARHQVTT--TKYKSTFEISSVQASD   66 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTT--------------CSSSSCEEEE--CSSEEEEECSSCCSCC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccc--------------ccccceeeee--ecceeEEeecCCCHHH
Confidence            34567788999999999999999998899999988653              2234444444  4456789999999999


Q ss_pred             CeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        156 AGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +|.|+|.+.|.. +..+..+.|.|.
T Consensus        67 ~G~Y~C~a~N~~-G~~~~~~~l~V~   90 (91)
T d1tnna_          67 EGNYSVVVENSE-GKQEAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECBCSS-CBCCEEEEEECC
T ss_pred             CEEEEEEEEECC-CEEEEEEEEEEE
Confidence            999999998654 445666777664

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.2e-13  Score=92.31  Aligned_cols=94  Identities=19%  Similarity=0.322  Sum_probs=69.6

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      .+.+.|....+.+|+++.|.|.+.+.| .+.+.|++++....            .....++.+... .....+|.|.+++
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~------------~~~~~~~~~~~~-~~~~~~L~I~~~~   68 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL------------SPNQQRISVVWN-DDDSSTLTIYNAN   68 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEE------------CCBSSSEEEEEE-ETTEEEEEECSCC
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeee------------eeccccEEEEee-cCcceEEEcccCc
Confidence            356677888899999999999998876 46899998654310            112344444432 3445689999999


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      .+|+|.|+|.+.|..+...+..+.|.|+
T Consensus        69 ~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          69 IDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             GGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             hhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            9999999999998776556667788775

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=100.13  Aligned_cols=95  Identities=17%  Similarity=0.281  Sum_probs=69.2

Q ss_pred             eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeee---ccCccccceEEEeecCCCCCeEEEE
Q psy16652        275 VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA---TSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       275 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      .+...++...+.+|+++.|.|.+.|.|.|.+.|++++..+............   .......++|.|.+++.+|+|.|+|
T Consensus         6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (105)
T d1nbqa1           6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC   85 (105)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred             EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence            3444556677899999999999999999999999976544322211111100   0011134679999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEe
Q psy16652        352 KAANKYGSAQKEIELFDR  369 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v~  369 (384)
                      .|.|..|.....+.|.+.
T Consensus        86 ~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          86 MVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEETTSSCEECCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            999999999888777654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=96.73  Aligned_cols=93  Identities=13%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEec-cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEA-YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      .|+.+.+.+....+.+|+.++|.|.+.| .|.+  ++.|++++..+......        .....+.|+|.....+|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~--------~~~~~s~l~i~~~~~dd~g~   74 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDHHGAQ   74 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--------TTTEEEEEEEECCSSCSSCE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc--------cccceEEEEEeeehhHCCCE
Confidence            4677777777778899999999999986 5655  68899999988543221        11245678999999999999


Q ss_pred             EEEEEEeCCcceEEEEEEEEeeee
Q psy16652        349 YACKAANKYGSAQKEIELFDRETQ  372 (384)
Q Consensus       349 Y~C~a~n~~g~~~~~~~l~v~~~~  372 (384)
                      |+|.|+|..|+....+.+.+.++.
T Consensus        75 ytC~A~n~~g~~~~~~~~~~s~p~   98 (103)
T d1iama1          75 FSCRTELDLRPQGLELFENTSAPY   98 (103)
T ss_dssp             EEEEEEEECGGGTSCEEEEECCCE
T ss_pred             EEEEEEeCCCCccCeEeeeEcCCC
Confidence            999999999998888887776543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-13  Score=93.40  Aligned_cols=96  Identities=21%  Similarity=0.338  Sum_probs=68.8

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      +...+....+.+|+++.|.|.+.+.| .+.++|+|++.....     .      ....+.....+.......|.|.+++.
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~-----~------~~~~~~~~~~~~~~~~~~L~I~~v~~   74 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCV-----K------LEDRQTSWKEEKNISFFILHFEPVLP   74 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEE-----E------CCSSCEEEEECSSCEEEEEEESSCCG
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCccccc-----c------cceeeeeEEecCCceEEEEEEccccH
Confidence            34446667799999999999999987 579999998865210     0      11122222333344556799999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      +|+|.|+|.+.|..+...+..+.|.|.+
T Consensus        75 ~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          75 NDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             HHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence            9999999999977655566778887753

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.48  E-value=1.6e-13  Score=95.41  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CCCCeeee-CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         71 RTPTISYI-SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        71 ~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+|.+... |.+..+.+|++++|.|.+.+.|.+.+.|++++.....   .....+.....................|.|.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   79 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGS---KYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR   79 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC----------------CEEEECCEEEEETTEEEEEEEEC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCc---eeccCCceeEeecccceeEEecCCcEEEEEC
Confidence            35666554 6788899999999999999999999999997654211   1111111111111111222224456789999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +++.+|+|.|+|.|.|. .+.....+.|.|
T Consensus        80 ~~~~~D~G~Y~C~a~N~-~G~~~~~~~L~V  108 (109)
T d2fdbp2          80 NVTFEDAGEYTCLAGNS-IGISFHSAWLTV  108 (109)
T ss_dssp             SCCGGGCEEEEEEEECS-SCEEEEEEEEEE
T ss_pred             CCCHHHCeEEEEEEEEC-CCEEEEEEEEEE
Confidence            99999999999999855 455666677765

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.6e-14  Score=91.59  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF  272 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  272 (384)
                      ..+.+|++++|.|.+.|.|.|.+.|++++....      ..+..|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~-~~~~~v~V~~   81 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLA   81 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEE------EESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECEEC
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccce------eeeeeeeeeecccccccEEEEEEEeCCCEE-EEEEEEEEEe
Confidence            347899999999999999999999999775433      356679999999999999999999998865 6677777765


Q ss_pred             cC
Q psy16652        273 AP  274 (384)
Q Consensus       273 ~p  274 (384)
                      .|
T Consensus        82 ~~   83 (84)
T d2nxyb2          82 FQ   83 (84)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.6e-14  Score=97.36  Aligned_cols=96  Identities=15%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCce--eee-eeeccCccccceEEEeecCCCCCeEEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY--SVS-HFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      |.+...++...+.+|+++.|.|.+.|.|.|.+.|++++.........  ... .........+++|+|.+++.+|+|.|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            44555666677899999999999999999999999855332211000  000 001111123567999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEe
Q psy16652        351 CKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v~  369 (384)
                      |.|.|..|.....+.|.|.
T Consensus        82 C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999998877776654

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=93.25  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE--CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK--DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+. ...+..+.+|+.+.|.|.+.|.|.|.+.|++  ++.......+....  .  ......+|.|.+++.+|+|.|+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~L~I~~v~~~D~G~Y~   76 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVT--S--SRRFIASFNVVNTTKRDAGKYR   76 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEE--E--TTEEEEEEEECSCCGGGCSEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEE--E--eecCceEEEECCCCHHHCeEEE
Confidence            46664 4677889999999999999999988654432  22222211111111  1  1123467999999999999999


Q ss_pred             EEEEeCCcceEEE-EEEEEe
Q psy16652        351 CKAANKYGSAQKE-IELFDR  369 (384)
Q Consensus       351 C~a~n~~g~~~~~-~~l~v~  369 (384)
                      |.|.|..|+..+. ..|.|+
T Consensus        77 C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          77 CMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCeEEEEEEEEEEC
Confidence            9999999987555 688774

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-14  Score=95.35  Aligned_cols=86  Identities=13%  Similarity=0.179  Sum_probs=66.5

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEeccCC-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAYPP-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      .+|.+...+....+.+|+.+.|.|.+.+.|+ ++|.|+++|..+....+....        .+.+|.|.+++.+|+|.|+
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~   76 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--------MGRRLLLRSVQLHDSGNYS   76 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE--------ESSEEEECSCCGGGCEEEE
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec--------CCCEEEECCCChhcCEEEE
Confidence            3566666666677888999999999998765 589999999888766543332        3568999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEE
Q psy16652        351 CKAANKYGSAQKEIELFD  368 (384)
Q Consensus       351 C~a~n~~g~~~~~~~l~v  368 (384)
                      |.|.|..+.   ++.|.|
T Consensus        77 C~a~n~~~~---t~~l~V   91 (93)
T d1n26a1          77 CYRAGRPAG---TVHLLV   91 (93)
T ss_dssp             EESSSSCSC---EEEEEE
T ss_pred             EEECCcccc---EEEEEE
Confidence            999876543   334544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-13  Score=89.57  Aligned_cols=80  Identities=20%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             CCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652        189 STRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA  267 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~  267 (384)
                      +.....+.+|+++.|.|.+. +.|.+.+.|++.+..+... ......+.|.|.+++.+|+|.|+|.|.|..+.. +.++.
T Consensus         9 p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~-~~s~~   86 (90)
T d1gsma1           9 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQ   86 (90)
T ss_dssp             CCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE-EEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             CCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee-eccCceeeEEcCccChhhCCcEEEEEEeCCCcE-EEEEE
Confidence            34557788999999999984 7888999999988765322 222245689999999999999999999987764 66676


Q ss_pred             EEE
Q psy16652        268 VEV  270 (384)
Q Consensus       268 l~v  270 (384)
                      |.|
T Consensus        87 l~V   89 (90)
T d1gsma1          87 LLV   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-13  Score=93.56  Aligned_cols=83  Identities=27%  Similarity=0.432  Sum_probs=68.6

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      ....+.+|+++.|.|.+.+ +.+.+.|++++..+.........  ..+|.|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L   89 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL   89 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEE
Confidence            3456889999999999876 56799999999887665554433  45899999999999999999999988776677899


Q ss_pred             EEEecC
Q psy16652        269 EVEFAP  274 (384)
Q Consensus       269 ~v~~~p  274 (384)
                      .|.++|
T Consensus        90 ~V~~~P   95 (96)
T d1l6za2          90 DIIFDP   95 (96)
T ss_dssp             EECCSC
T ss_pred             EEEcCC
Confidence            998877

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-13  Score=89.64  Aligned_cols=82  Identities=11%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      |.|...|.+..+.+|+++.|.|.+.+.|.+ .+.|++++.....                         .....+.|...
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~-------------------------~~~~~~~l~~~   56 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG-------------------------PAPSPSVLNVT   56 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSC-------------------------SEESSEEEEEC
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCC-------------------------CCCcceEEecC
Confidence            678888999999999999999999998865 8999997754210                         00112455666


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      ..+|+|.|+|.+.|..+...+..+.|.|
T Consensus        57 ~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          57 GVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             CCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            7789999999999887766677777766

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.45  E-value=9.9e-14  Score=93.51  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .|.|...|.+..+.+|+++.|.|.+.+.|. ..+.|++++.....             ...++...    ....+|.|.+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~-------------~~~~~~~~----~~~~~L~i~~   64 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW-------------QEHNAALR----KDEGSLVFLR   64 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCT-------------TTTTEEEC----TTSCCEEESS
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeee-------------ecceeeec----ccceEEEEec
Confidence            477888888899999999999999998874 47999998765311             11111121    1223699999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      ++.+|+|.|+|.+.|..+...+..+.|.
T Consensus        65 v~~~D~G~Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          65 PQASDEGHYQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             cChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence            9999999999999987765555665554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.5e-14  Score=94.59  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             CCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCC--ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        280 RPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQ--HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      +....+.+|+.+.|.|.+. +.|.++|.|+++|..+....  ...+..       ...+|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-------HKEKLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE-------ETTEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec-------cCCEEEeccceecCCEEEEEEEECC
Confidence            3345567899999999885 67889999999986554332  222221       3568999999999999999999999


Q ss_pred             CcceEEEEEEEEeeeec
Q psy16652        357 YGSAQKEIELFDRETQT  373 (384)
Q Consensus       357 ~g~~~~~~~l~v~~~~~  373 (384)
                      .|....++.|.|....+
T Consensus        82 ~g~~~~~~~L~V~~~~p   98 (101)
T d1iray1          82 SYCLRIKISAKFVENEP   98 (101)
T ss_dssp             TEEEEEEEEEEEECCCT
T ss_pred             CCeEEEEEEEEEEeCCC
Confidence            99999999999987654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.45  E-value=1.7e-13  Score=90.62  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             eeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         77 YISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      +.++...+.+|++++|.|.+.+ .+...+.|+|++...                      ..  ......|.|.+++.+|
T Consensus         5 lq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~----------------------~~--~~~~~~l~i~~v~~~d   60 (88)
T d2fcba2           5 LQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSK----------------------KF--SRSDPNFSIPQANHSH   60 (88)
T ss_dssp             EECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEE----------------------EE--ESSCCEEEETTCCGGG
T ss_pred             EeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccc----------------------cc--cccccccccCccCHHH
Confidence            3445566889999999999865 467789999976431                      00  1122369999999999


Q ss_pred             CeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        156 AGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       156 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      +|.|+|.+.+..+...+..+.|.|..|
T Consensus        61 sG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          61 SGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             CCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            999999999776655677888888764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.7e-13  Score=89.64  Aligned_cols=80  Identities=21%  Similarity=0.366  Sum_probs=63.9

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+....... ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~v~   87 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVE   87 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEE-EEEEEEE
Confidence            34556789999999999999999999999877654332221 234589999999999999999999998875 6777777


Q ss_pred             EE
Q psy16652        270 VE  271 (384)
Q Consensus       270 v~  271 (384)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-13  Score=93.34  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+.+...|.+..+.+|++++|.|.+.+.|   .+.+.|++++.....     ...........++  ........+.|.|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~L~I   76 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS-----SKVGQHLQLHDSY--DRASKVYLFELHI   76 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCST-----TTCSSSEEEEEEE--ETTTTEEEEEEEE
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeec-----ccCCceeEeeeee--EEecccCEEEEEE
Confidence            35677778889999999999999999876   467999987643211     0011101111111  1112334568999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      .+++..|+|.|+|.+.|. .+..+..+.|.|.++
T Consensus        77 ~~v~~~D~G~Y~C~a~N~-~G~~~~~~~L~V~~~  109 (110)
T d2avga1          77 TDAQPAFTGGYRCEVSTK-DKFDCSNFNLTVHEA  109 (110)
T ss_dssp             ESCCTTCCEEEEEEEEET-TEEEEEEEEEEEESC
T ss_pred             eccCHHHCcEEEEEEEEC-CCeEEEEEEEEEEec
Confidence            999999999999999854 466778888888754

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.44  E-value=1.6e-13  Score=90.14  Aligned_cols=79  Identities=15%  Similarity=0.297  Sum_probs=64.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +|.+.+.|+...+.+|+.++|.|.+.+.|.+ .+.|++||..+...               ...|.|..++.+|+|.|+|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~---------------~~~l~i~~v~~~dsG~Y~C   68 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH---------------TQPSYRFKANNNDSGEYTC   68 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC---------------CSSEEEEECCGGGCEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc---------------ccceEEeeccccCCcEEEE
Confidence            3567777777889999999999999998877 68999999887532               4568999999999999999


Q ss_pred             EEEeCCcceEEEEEE
Q psy16652        352 KAANKYGSAQKEIEL  366 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l  366 (384)
                      .|.|..++....++|
T Consensus        69 ~a~ns~~S~~v~l~V   83 (85)
T d2fcba1          69 QTGQTSLSDPVHLTV   83 (85)
T ss_dssp             ECTTSBCCCCEEEEE
T ss_pred             ECCCCcccccEEEEE
Confidence            999987776655444

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-13  Score=92.34  Aligned_cols=79  Identities=10%  Similarity=0.111  Sum_probs=62.9

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ..+.+|+++.|.|.+.| |+|.+.|+++|..+.........       ..+..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~-------~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGL-------MGRKNLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCC-------TTTTCEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeec-------ceeeEEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            45688999999999998 77899999999888655432211       13567999999999999999999999998776


Q ss_pred             EEEEEEe
Q psy16652        363 EIELFDR  369 (384)
Q Consensus       363 ~~~l~v~  369 (384)
                      ...|.+.
T Consensus        79 ~~~l~~~   85 (92)
T d1olza1          79 FQVVAKH   85 (92)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6655443

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.44  E-value=4.3e-14  Score=97.17  Aligned_cols=81  Identities=14%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             CCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...........     ...++|.|.+++.+|+|.|+|.|.|..|+
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-----QTTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-----TTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-----cCCCEEeecccccccCcEEEEEEEECCCC
Confidence            34678899999999997 7899999999999977644332221110     13567999999999999999999999999


Q ss_pred             eEEEEEE
Q psy16652        360 AQKEIEL  366 (384)
Q Consensus       360 ~~~~~~l  366 (384)
                      ..+++..
T Consensus        87 ~~~~v~~   93 (105)
T d1cs6a2          87 ITKSVFS   93 (105)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            8877543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-13  Score=90.48  Aligned_cols=84  Identities=14%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      +..+..+.+|+.+.|.|.+. .|.+.+.|+++|.++..+.+........+   ....|.|.+++.+|+|.|+|.|.|.  
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~--   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEG---KKHILIIEGATKADAAEYSVMTTGG--   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEET---TEEEEEEEEECTTTCSEEEEEETTE--
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeC---CccEEEECccccccCEEEEEEEecc--
Confidence            34567789999999999994 58889999999999977665433332221   3467999999999999999999774  


Q ss_pred             ceEEEEEEEEee
Q psy16652        359 SAQKEIELFDRE  370 (384)
Q Consensus       359 ~~~~~~~l~v~~  370 (384)
                        ..+.+|.|..
T Consensus        80 --~~~a~l~V~~   89 (90)
T d1x44a1          80 --QSSAKLSVDL   89 (90)
T ss_dssp             --EEEEEEEEEC
T ss_pred             --eEEEEEEEEE
Confidence              4455666653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=90.71  Aligned_cols=83  Identities=13%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             eeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      +.+.++...+.+|++++|.|.+.+ .+...+.|++++...              .      ..    .....|.|.+++.
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~--------------~------~~----~~~~~l~I~~v~~   60 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR--------------K------YF----HHNSDFHIPKATL   60 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE--------------E------EE----EECCCEEESSCCG
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccc--------------c------ee----ccccccEECccce
Confidence            344556667899999999999864 466789999976431              0      00    1122589999999


Q ss_pred             CCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        154 TDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      +|+|.|+|.+.+..+...+..+.|.|.+
T Consensus        61 ~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          61 KDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            9999999999987666667788888764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-13  Score=91.89  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=58.8

Q ss_pred             cccccCCcEEEEE------EEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        283 QGQALQYDAILEC------HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       283 ~~~~~g~~~~l~C------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      +.+..|....|.|      .+.++|.|.+.|++||.++..+......        .+..|.|.+++.+|+|.|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG--------VKDRLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE--------ETTEEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe--------cCCEEEEcccccccCcEEEEEEEEC
Confidence            3467899999999      5678999999999999999766543322        3567999999999999999999998


Q ss_pred             CcceEE
Q psy16652        357 YGSAQK  362 (384)
Q Consensus       357 ~g~~~~  362 (384)
                      .|....
T Consensus        81 ~~g~~~   86 (103)
T d1iray2          81 YLGKQY   86 (103)
T ss_dssp             ETTEEE
T ss_pred             cCCEEE
Confidence            875443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.5e-13  Score=89.94  Aligned_cols=97  Identities=22%  Similarity=0.324  Sum_probs=71.2

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+ .+.|++.+.......   .     .....++.+..  ......|.|.+
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~---~-----~~~~~~~~~~~--~~~~~~L~I~~   71 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKAL---M-----NGSESRFFVSS--SQGRSELHIEN   71 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEEC---C-----TTGGGTEEEEE--ETTEEEEEECS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeec---c-----cCCCceEEEEe--CCCEEEEEEec
Confidence            6888888888889999999999999987755 799999765421110   0     01234555554  44567899999


Q ss_pred             cC-CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        151 IQ-ETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       151 ~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +. ..|+|.|+|.|.|.. +..+..+.|.|
T Consensus        72 v~~~~D~G~Y~C~A~N~~-G~~~~~~~L~V  100 (101)
T d3b5ha1          72 LNMEADPGQYRCNGTSSK-GSDQAIITLRV  100 (101)
T ss_dssp             CCTTTSSEEEEEEEEETT-EEEEEEEEEEE
T ss_pred             cccccCCEEEEEEEEECC-CEEEEEEEEEE
Confidence            98 579999999998654 55666677766

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-13  Score=89.98  Aligned_cols=79  Identities=27%  Similarity=0.346  Sum_probs=64.9

Q ss_pred             EEeecCceEEEEEEeccc-CCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE  271 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  271 (384)
                      ..+.+|+++.|.|.+.+. +..++.|++++..+...    .....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc----cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            447899999999999664 44589999999766432    2346799999999999999999999877766788999998


Q ss_pred             ecCe
Q psy16652        272 FAPV  275 (384)
Q Consensus       272 ~~p~  275 (384)
                      ++|+
T Consensus        86 ~~Pr   89 (89)
T d1f2qa2          86 KAPR   89 (89)
T ss_dssp             CSCC
T ss_pred             eCCC
Confidence            8874

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.6e-13  Score=93.59  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      |...|++..+.+|++++|.|.+.+.|   .+.+.|++++.....     ...........  ............|.|.++
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~L~I~~v   75 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA-----SKAGKHLQLKE--TFERHSRVYTFEMQIIKA   75 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHH-----HHTTSSEEEEE--EEETTTTEEEEEEEECSC
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccc-----cccceeeeecc--ceeeEeecCEEEEEEccC
Confidence            44557778899999999999999876   468999997653210     00000000001  111122344567999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPII  185 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  185 (384)
                      +.+|+|.|+|.+.|. .+..+..+.|.|..++..
T Consensus        76 ~~~D~G~Y~C~a~N~-~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          76 KDNFAGNYRCEVTYK-DKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             CTTSCEEEEEEEECS-SCEEEECCEEEEECCCCS
T ss_pred             CHHHCeEEEEEEEeC-CCEEEEEEEEEEEcCCCc
Confidence            999999999999854 456777888988766543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=91.55  Aligned_cols=79  Identities=25%  Similarity=0.427  Sum_probs=64.3

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN  265 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  265 (384)
                      ....+..|+++.|.|.+.|.|.|.+.|++++..+......   .  ....+|.|.++..+|+|.|+|.|.|..|.. +..
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~   91 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHT   91 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEE
Confidence            3456889999999999999999999999999877654322   1  134689999999999999999999998875 666


Q ss_pred             EEEEE
Q psy16652        266 IAVEV  270 (384)
Q Consensus       266 ~~l~v  270 (384)
                      +.|.|
T Consensus        92 ~~l~V   96 (97)
T d3dara1          92 YHLDV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.2e-14  Score=91.75  Aligned_cols=73  Identities=26%  Similarity=0.380  Sum_probs=60.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  269 (384)
                      +....+.+|+.+.|.|.+.|.|.|++.|++++..+....         .+.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~---------~~~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~   80 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGEV-TREVTVN   80 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT---------SCEECCGGGCEEEEEEEEETTEEE-EEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee---------eeeccccCCCCEEEEEEEcCCCEE-EEEEEEE
Confidence            566789999999999999999999999999987665432         245678899999999999998875 6778887


Q ss_pred             EEe
Q psy16652        270 VEF  272 (384)
Q Consensus       270 v~~  272 (384)
                      |..
T Consensus        81 V~~   83 (84)
T d2oz4a3          81 VLS   83 (84)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            754

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.5e-13  Score=95.01  Aligned_cols=107  Identities=18%  Similarity=0.242  Sum_probs=74.5

Q ss_pred             CCCCeee-----eCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceec---------------cCceeeeC
Q psy16652         71 RTPTISY-----ISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM---------------SGSLIIHD  130 (384)
Q Consensus        71 ~~p~~~~-----~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~---------------~~~~~~~~  130 (384)
                      .||.|..     .++.+.|.+|+.++|.|.+.+.|.+.+.|++++............               ........
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            4555532     355677999999999999999999999999988664322211110               01112223


Q ss_pred             CceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      .++.+..  ......|.|.+++.+|+|.|+|.|.|. .|..+..+.|.|.
T Consensus        83 ~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVET--TKDRSIFTVEGAEKEDEGVYTVTVKNP-VGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEE--ETTEEEEECSCCCTTTCEEEEEEEECS-SCEEEEEEEEEEC
T ss_pred             ceEEEEE--CCCEEEEEECcCChhcCEEEEEEEEEC-CCEEEEEEEEEEE
Confidence            4555554  456778999999999999999999865 4557777888774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.8e-13  Score=93.31  Aligned_cols=95  Identities=18%  Similarity=0.275  Sum_probs=65.3

Q ss_pred             CCCeeeeCcc--eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQE--QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~--~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ||.|...+..  ..+..|+++.|.|.+.+.|.+.+.|++++.......          ....++..    ......|.|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~----------~~~~~~~~----~~~~~~L~I~   68 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE----------EDDEKHIF----SDDSSELTIR   68 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC------------CCSSEEE----CTTSCEEEEC
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCccccccc----------ccceeEEe----ecCceEEEeC
Confidence            4555544433  346789999999999999989999999775421100          00111111    2234579999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR  181 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  181 (384)
                      +++.+|+|.|+|.+.|.. +..+..+.|.|..
T Consensus        69 ~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~   99 (100)
T d1qz1a3          69 NVDKNDEAEYVCIAENKA-GEQDASIHLKVFA   99 (100)
T ss_dssp             SCCGGGCEEEEEEEEETT-EEEEEEEEEEEEC
T ss_pred             CCCcccCEEEEEEEEECC-CEEEEEEEEEEEE
Confidence            999999999999998654 5567778887764

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.40  E-value=4.4e-13  Score=87.73  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +|.+.+.|....+.+|+.++|.|.+.+.|.+ .+.|++++..+..               ...+|.|.+++.+|+|.|+|
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C   69 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------------QASSYFIDAATVNDSGEYRC   69 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------------SCSEEEESSCCGGGCEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee---------------cceeeEecCCcccCCEEEEE
Confidence            4667777778889999999999999998888 4677888876642               24579999999999999999


Q ss_pred             EEEeCCcceEEEEE
Q psy16652        352 KAANKYGSAQKEIE  365 (384)
Q Consensus       352 ~a~n~~g~~~~~~~  365 (384)
                      .|.|..++....++
T Consensus        70 ~a~~s~~S~~v~L~   83 (84)
T d1fnla1          70 QTNLSTLSDPVQLE   83 (84)
T ss_dssp             ECSSSCCCCCEEEE
T ss_pred             EccCCCccccEEEE
Confidence            99988776654443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-13  Score=90.67  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      +..+|.+...+..+.+.+|++++|.|.+.+.+ .+.++|+|++.....              ..+.....     +.+|.
T Consensus         3 P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~--------------~~~~~~~~-----~~~L~   63 (93)
T d1n26a1           3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS--------------HPSRWAGM-----GRRLL   63 (93)
T ss_dssp             SSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC--------------CCEEEEEE-----SSEEE
T ss_pred             CCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc--------------eeeEEecC-----CCEEE
Confidence            45678999999999999999999999998765 468999998865311              12222211     12699


Q ss_pred             EeecCCCCCeeEEEEEEE
Q psy16652        148 IKEIQETDAGIYKCEVII  165 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~  165 (384)
                      |.+++.+|+|.|+|.+.+
T Consensus        64 I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1          64 LRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             ECSCCGGGCEEEEEESSS
T ss_pred             ECCCChhcCEEEEEEECC
Confidence            999999999999998853

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-13  Score=89.02  Aligned_cols=78  Identities=18%  Similarity=0.371  Sum_probs=60.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      +|.+.+.|+...+.+|+.++|.|.+.+.|.+ .+.|++++..+..               ....|.|..++.+|+|.|.|
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~i~~v~~~d~G~Y~C   65 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------------TNSSLNIVNAKFEDSGEYKC   65 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------------CSSEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec---------------ccceeEECCCChhhCCcEEE
Confidence            4677777777889999999999999998888 4677888877642               24569999999999999999


Q ss_pred             EEEeCCcceEEEEE
Q psy16652        352 KAANKYGSAQKEIE  365 (384)
Q Consensus       352 ~a~n~~g~~~~~~~  365 (384)
                      .|.|..++....+.
T Consensus        66 ~a~~s~~S~~v~l~   79 (82)
T d1f2qa1          66 QHQQVNESEPVYLE   79 (82)
T ss_dssp             ECTTSSCCCCEEEE
T ss_pred             EecCCCCcccEEEE
Confidence            99998776654433

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9e-13  Score=88.39  Aligned_cols=79  Identities=16%  Similarity=0.267  Sum_probs=60.4

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      +...+.+|+.+.|.|.+. .|++.+.|++||..+..+. ++.+.. .    .....|.|.++..+|+|.|+|.|.|.   
T Consensus        14 ~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~-~----~~~~~L~I~~~~~~D~G~Y~c~a~n~---   84 (94)
T d1pd6a_          14 PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES-I----GAKRTLTISQCSLADDAAYQCVVGGE---   84 (94)
T ss_dssp             SEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEE-E----TTEEEEEECSCSSSSCEEEEEEETTE---
T ss_pred             CCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeec-c----CCeEEeecCCCCceecEEEEEEEeeE---
Confidence            345678999999999985 4889999999999997654 344332 1    13567999999999999999999764   


Q ss_pred             eEEEEEEEEe
Q psy16652        360 AQKEIELFDR  369 (384)
Q Consensus       360 ~~~~~~l~v~  369 (384)
                       ..+..|.|.
T Consensus        85 -~~s~~l~V~   93 (94)
T d1pd6a_          85 -KCSTELFVK   93 (94)
T ss_dssp             -EECCEEEEE
T ss_pred             -EEEEEEEEE
Confidence             445566665

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=5e-13  Score=89.35  Aligned_cols=80  Identities=24%  Similarity=0.336  Sum_probs=59.7

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +.+...|.+..+.+|+.+.|.|.+.+.|.+.+.|++++.....            ....++....  .   .+|.|.+++
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~------------~~~~~~~~~~--~---~~L~I~~~~   64 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL------------KKDVRFIVLS--N---NYLQIRGIK   64 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGG------------GCCTTEEECT--T---SCEEETTCC
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCccccc------------ccceeeeeee--e---eeEEECCCC
Confidence            4566778888999999999999999999999999998754211            0111222211  1   259999999


Q ss_pred             CCCCeeEEEEEEEccCc
Q psy16652        153 ETDAGIYKCEVIISLNN  169 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~  169 (384)
                      ..|+|.|+|.+.|..++
T Consensus        65 ~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2          65 KTDEGTYRCEGRILARG   81 (92)
T ss_dssp             GGGCEEEEEEEEEGGGT
T ss_pred             HHhCEEEEEEEEECcCC
Confidence            99999999999875544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=2.1e-12  Score=88.35  Aligned_cols=99  Identities=13%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      |.+..++....+.+|++++|.|.+.+.|.+.+.|++.+.......  ............+....      ..+|.|.+++
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~tL~I~~v~   73 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALV--CYNSQITAPYADRVTFS------SSGITFSSVT   73 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEE--EETTEECGGGTTTEEEE------TTEEEESCCC
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeee--ccccccccceeeEEEec------CCEEEEeECC
Confidence            556666777889999999999999998888999999876521110  11110011112233222      2369999999


Q ss_pred             CCCCeeEEEEEEEccCcc-eeeeEEEEE
Q psy16652        153 ETDAGIYKCEVIISLNNK-VSAEVELIV  179 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~-~~~~~~l~v  179 (384)
                      .+|+|.|+|.+.+..+.. ....+.|.|
T Consensus        74 ~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          74 RKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             GGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             ccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            999999999998665442 233344443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.6e-12  Score=86.72  Aligned_cols=93  Identities=17%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEE-EeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWM-KMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .|.|. .+.+..|.+|+++.|.|.+.+.|.+.+.|. .+.....     .       .......+..  .....+|.|.+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~-----~-------~~~~~~~~~~--~~~~~~L~I~~   66 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRD-----A-------PLKEIKVTSS--RRFIASFNVVN   66 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCC-----C-------CEEEEEEEET--TEEEEEEEECS
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeee-----e-------cCCceeEEEe--ecCceEEEECC
Confidence            56776 478888999999999999999876655444 3332210     0       0011111111  33455799999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      ++.+|+|.|+|.+.|..+...+....|.|
T Consensus        67 v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          67 TTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             CCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            99999999999999777666666677776

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.35  E-value=1e-11  Score=86.24  Aligned_cols=91  Identities=23%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +...|..+.+.+|++|+|.|.........+.||+.........+.............++....+.....++|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            55667888899999999999987666668999998866555555555555555677888888877788999999999999


Q ss_pred             CCeeEEEEEEE
Q psy16652        155 DAGIYKCEVII  165 (384)
Q Consensus       155 d~G~Y~C~~~~  165 (384)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~Ca~~~   93 (114)
T d2cdea1          83 DSASYICVVSD   93 (114)
T ss_dssp             GCSEEEEEEEC
T ss_pred             hCcccceeeec
Confidence            99999999874

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.1e-12  Score=85.81  Aligned_cols=86  Identities=22%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      |+.++.+..+.+|+++.|.|.+. .|.+.+.|++++.....            ....++.+..  ....++|.|.+++.+
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~------------~~~~~~~~~~--~~~~~~L~I~~v~~~   67 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIP------------GPKSRYRIRV--EGKKHILIIEGATKA   67 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCC------------STTCSEEEEE--ETTEEEEEEEEECTT
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCC------------CCCccEEEEE--eCCccEEEECccccc
Confidence            45567788899999999999985 57778999998754211            1122344444  455678999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      |+|.|+|.+.+     ......|.|.
T Consensus        68 D~G~Y~C~a~n-----~~~~a~l~V~   88 (90)
T d1x44a1          68 DAAEYSVMTTG-----GQSSAKLSVD   88 (90)
T ss_dssp             TCSEEEEEETT-----EEEEEEEEEE
T ss_pred             cCEEEEEEEec-----ceEEEEEEEE
Confidence            99999999842     3344566654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.34  E-value=9.2e-14  Score=92.17  Aligned_cols=82  Identities=15%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      +..+..+.+|+++.|.|.+ +.|.|.+.|++||.++..++++.+....     ....|.|.+++.+|+|.|+|.|.|..+
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECS-----SCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeec-----eeEEEEEcCCChhcCEEEEEEECceEE
Confidence            3456778899999999998 5688999999999999988887765421     356799999999999999999988654


Q ss_pred             ceEEEEEEEEee
Q psy16652        359 SAQKEIELFDRE  370 (384)
Q Consensus       359 ~~~~~~~l~v~~  370 (384)
                          +..|.|.+
T Consensus        81 ----sa~l~V~e   88 (89)
T d1tiua_          81 ----AANLKVKE   88 (89)
T ss_dssp             ----CEEEEEEC
T ss_pred             ----EEEEEEEE
Confidence                34565553

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-12  Score=88.99  Aligned_cols=90  Identities=16%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      .+.+...++.+.+.+|++++|.|.+.+.|.+.+.|++++.......  ............+....      ..+|.|.++
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~L~I~~v   75 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV--CYNNKITASYEDRVTFL------PTGITFKSV   75 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEES--EETTEECTTTTTTCEEE------TTEEECSCC
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeee--eccceeeccccceeeec------CceEEEecc
Confidence            4456666777779999999999999999999999999876521110  00000000111222221      136999999


Q ss_pred             CCCCCeeEEEEEEEccCc
Q psy16652        152 QETDAGIYKCEVIISLNN  169 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~  169 (384)
                      +.+|+|.|+|.+.|..+.
T Consensus        76 ~~~D~G~Y~C~a~n~~G~   93 (105)
T d1nbqa1          76 TREDTGTYTCMVSEEGGN   93 (105)
T ss_dssp             CTTSCSEEEEEEEETTSS
T ss_pred             cccceeeEEEEEEECCCC
Confidence            999999999999876554

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=86.73  Aligned_cols=89  Identities=12%  Similarity=0.186  Sum_probs=67.0

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      .|.+...+.+..+.+|+++.|.|.+.+.|.+.+.|++++......                  ...........|.|.++
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~------------------~~~~~~~~~~~L~i~~~   63 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT------------------VMKSGGLPSLGLTLANV   63 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE------------------ECCCCCSSEEEEEEESC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeee------------------eeeeeeccceeEEEccc
Confidence            578888888999999999999999999999999999987652110                  00111345568999999


Q ss_pred             CCCCCe-eEEEEEEEccCcceeeeEEEEE
Q psy16652        152 QETDAG-IYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +.+|.| .|+|.+.|..+ ..+..+.|.|
T Consensus        64 ~~~d~G~~Y~C~a~N~~G-~~~~s~~l~V   91 (92)
T d2ifga1          64 TSDLNRKNVTCWAENDVG-RAEVSVQVNV   91 (92)
T ss_dssp             CSTTTTCCEEECCEETTE-ECCEEECCCC
T ss_pred             cccccceEEEEEEEcCCC-EEEEEEEEEE
Confidence            999999 79999986654 4455555443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-12  Score=86.16  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=64.2

Q ss_pred             ecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE---------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652        196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY---------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       196 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      ..+....|.|.+.|.|.|++.|++++..+........         ....|.|.+++.+|+|.|+|.|.|..|.. +..+
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEEE
Confidence            3577888999999999999999999988765433221         12479999999999999999999999986 7778


Q ss_pred             EEEEEecCe
Q psy16652        267 AVEVEFAPV  275 (384)
Q Consensus       267 ~l~v~~~p~  275 (384)
                      .|.|..+|.
T Consensus        93 ~v~V~~~P~  101 (103)
T d1wwbx_          93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEEEeCCC
Confidence            888777664

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.4e-13  Score=91.53  Aligned_cols=88  Identities=10%  Similarity=0.091  Sum_probs=62.0

Q ss_pred             CCCcccccCCcEEEEEEEec-cC--CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652        280 RPRQGQALQYDAILECHVEA-YP--PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~-~p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      .....+.+|+.++|.|.+.| .|  .+++.|++++.++.........   .......+.|.+.....+|.|.|+|.|.|.
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~---~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA---PAPQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST---TCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEe---ecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            34456778999999999987 44  4489999999998644322211   111112345777777778888999999999


Q ss_pred             CcceEEEEEEEEee
Q psy16652        357 YGSAQKEIELFDRE  370 (384)
Q Consensus       357 ~g~~~~~~~l~v~~  370 (384)
                      .|.....+.+.+..
T Consensus        86 ~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          86 LMSRGGNIFHKHSA   99 (106)
T ss_dssp             CGGGTCCEEEEECC
T ss_pred             CCCCCCeeEecccC
Confidence            99877777666644

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.30  E-value=2.9e-11  Score=83.78  Aligned_cols=94  Identities=20%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.|||.......+.+............+++............|.|.+++.
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            35667778889999999999998766666799999765544444444444444556677777777677889999999999


Q ss_pred             CCCeeEEEEEEEcc
Q psy16652        154 TDAGIYKCEVIISL  167 (384)
Q Consensus       154 ~d~G~Y~C~~~~~~  167 (384)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          82 GDSATYLCAVRPTS   95 (113)
T ss_dssp             GGCEEEEEEEEESS
T ss_pred             CCCcEEeEeEecCC
Confidence            99999999987443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-11  Score=82.91  Aligned_cols=78  Identities=15%  Similarity=0.261  Sum_probs=58.0

Q ss_pred             CCCCeeeeCcc-eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         71 RTPTISYISQE-QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        71 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+|.+.....+ ..|.+|+++.|.|.+. .|.+.+.|++++..+.             ..+.++.+..  ..+.+.|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~-------------~~~~~~~~~~--~~~~~~L~I~   67 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQ-------------MSGSKYIFES--IGAKRTLTIS   67 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEEC-------------CCSSSSEEEE--ETTEEEEEEC
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccce-------------eeeeeEeeec--cCCeEEeecC
Confidence            34556555554 4589999999999985 4777999999887521             1233455554  3456789999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|+|.|+|.+.
T Consensus        68 ~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_          68 QCSLADDAAYQCVVG   82 (94)
T ss_dssp             SCSSSSCEEEEEEET
T ss_pred             CCCceecEEEEEEEe
Confidence            999999999999984

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=7.4e-13  Score=91.50  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             ccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCe---EEEEEEEeCCcc
Q psy16652        284 GQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG---QYACKAANKYGS  359 (384)
Q Consensus       284 ~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~  359 (384)
                      .+.+|+.+.|.|.+ .|.|.|.+.|++++..+............ .....+.+|.|.+++.+|+|   .|.|.|.|..|+
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR-ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT-EEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeee-eccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            46789999999996 89999999999987666433222111100 00013567999999988766   799999999999


Q ss_pred             eEEEEEEEEeee
Q psy16652        360 AQKEIELFDRET  371 (384)
Q Consensus       360 ~~~~~~l~v~~~  371 (384)
                      ....+.+.+...
T Consensus        92 ~~~~~~~~~i~~  103 (111)
T d1biha2          92 EEVVLVEYEIKG  103 (111)
T ss_dssp             SCEEEEEEEECC
T ss_pred             ceEEEEEEEeCc
Confidence            988876555443

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.2e-12  Score=86.65  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=60.4

Q ss_pred             cCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652        197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV  268 (384)
Q Consensus       197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  268 (384)
                      .+....|.|.+.|.|.|.+.|++++..+........        ....|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v   94 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTING   94 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEEE
Confidence            345566888999999999999999987765543221        23469999999999999999999998875 677777


Q ss_pred             EEEecC
Q psy16652        269 EVEFAP  274 (384)
Q Consensus       269 ~v~~~p  274 (384)
                      .|..+|
T Consensus        95 ~V~~~P  100 (105)
T d1wwca_          95 HFLKEP  100 (105)
T ss_dssp             CCSCCC
T ss_pred             EEEeCC
Confidence            776555

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=9.5e-13  Score=89.04  Aligned_cols=90  Identities=22%  Similarity=0.322  Sum_probs=64.8

Q ss_pred             CCCeeeeCcceeeecc---CcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         72 TPTISYISQEQIKDIA---QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +|.+...|.+..+.+|   ++++|.|.+.+.|.+.+.|++++......            ...++...     ....|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~------------~~~~~~~~-----~~~~l~i   66 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG------------PDSRYRLV-----AGDLVIS   66 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCS------------TTSSEEEE-----TTEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCC------------CCceEEee-----eeeEEEE
Confidence            4678888888887766   78999999999999999999987642110            11111111     1246889


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELI  178 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  178 (384)
                      ..++.+|+|.|+|.+.|..+...+..+.|.
T Consensus        67 ~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          67 NPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             SCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            999999999999999987765556556553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.29  E-value=2.1e-12  Score=84.73  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+|.+.+.|+...+.+|++|+|.|.+.+.+. ..+.|++++...                          ......|.|.
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~--------------------------~~~~~~l~i~   56 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLI--------------------------PTHTQPSYRF   56 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEEC--------------------------TTCCSSEEEE
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccc--------------------------cccccceEEe
Confidence            4678888888899999999999999988764 467888866431                          1112258999


Q ss_pred             ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +++.+|+|.|+|++.+   ...+..+.|.|.
T Consensus        57 ~v~~~dsG~Y~C~a~n---s~~S~~v~l~V~   84 (85)
T d2fcba1          57 KANNNDSGEYTCQTGQ---TSLSDPVHLTVL   84 (85)
T ss_dssp             ECCGGGCEEEEEECTT---SBCCCCEEEEEE
T ss_pred             eccccCCcEEEEECCC---CcccccEEEEEE
Confidence            9999999999999753   234556666664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=5.6e-12  Score=87.51  Aligned_cols=94  Identities=16%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +..+.+|+++.|.|.+. +.|.+.+.|++++.........    .........+..    ......|.|.+++.+|+|.|
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~l~I~~v~~~D~G~Y   82 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK----KTRAFMNSSFTI----DPKSGDLIFDPVTAFDSGEY   82 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC---------CBSCSSSCEEE----CTTTCCEEESSCCGGGCEEE
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCce----eEEeecCceEEE----eecccceEECCCCccCCEEE
Confidence            34588999999999985 6788899999987543211100    000011111111    22334699999999999999


Q ss_pred             EEEEEEccCcc-eeeeEEEEEecC
Q psy16652        160 KCEVIISLNNK-VSAEVELIVRRP  182 (384)
Q Consensus       160 ~C~~~~~~~~~-~~~~~~l~v~~~  182 (384)
                      +|.+.|..+.. .+..+.|.|.+.
T Consensus        83 ~C~a~N~~G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          83 YCQAQNGYGTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             EEEEECSSSCCEECCCEEEEEESS
T ss_pred             EEEEEECCCcEEEEEEEEEEEEec
Confidence            99999766543 355677777643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.28  E-value=9.9e-13  Score=87.07  Aligned_cols=84  Identities=12%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      |..+..+..+.+|+++.|.|.+. .|.+.+.|++++...              ..++++.+..  .+..+.|.|.+++.+
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i--------------~~~~~~~~~~--~~~~~~L~I~~~~~~   66 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPL--------------TASPDCEIIE--DGKKHILILHNCQLG   66 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCC--------------CSSSSCEEEE--CSSCEEEECCSCCSC
T ss_pred             EEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeec--------------ccceeEEEEe--eceeEEEEEcCCChh
Confidence            45567788899999999999974 577799999988763              3456777766  456678999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      |+|.|+|.+.+     ...+..|.|.
T Consensus        67 D~G~Y~c~a~n-----~~~sa~l~V~   87 (89)
T d1tiua_          67 MTGEVSFQAAN-----AKSAANLKVK   87 (89)
T ss_dssp             CCSEECCBCSS-----CBCCEEEEEE
T ss_pred             cCEEEEEEECc-----eEEEEEEEEE
Confidence            99999998743     2334556554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=7.9e-11  Score=81.48  Aligned_cols=91  Identities=21%  Similarity=0.398  Sum_probs=67.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ++..|..+.+.+|++|+|.|..... ....+.||+......+..+... ........++|+.+..+.....+.|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            5677888889999999999998653 3457899997654333333322 2223334567898888777778899999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          82 RNDSGIYLCGAIS   94 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999998863

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-11  Score=81.95  Aligned_cols=70  Identities=21%  Similarity=0.382  Sum_probs=57.8

Q ss_pred             ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce--eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS--IYRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ....+.+|+++.|.|.+.+ +.+.+.|++++..+......  ...++.|.|.++..+|+|.|+|.|.|..+..
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            3467899999999999988 67899999999887655432  2345689999999999999999999987754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4e-11  Score=82.52  Aligned_cols=95  Identities=23%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             cceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         80 QEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      +.+.+.+|++|+|.|.....  ....+.|+|.........+............+|+.+..+...+...|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            34557899999999987543  2346789996654333334444444445566788887777788899999999999999


Q ss_pred             eEEEEEEEccCcceeee
Q psy16652        158 IYKCEVIISLNNKVSAE  174 (384)
Q Consensus       158 ~Y~C~~~~~~~~~~~~~  174 (384)
                      .|.|.+...........
T Consensus        84 ~Y~C~v~~~~~~~~~~~  100 (108)
T d1hkfa_          84 HYWCRIYRPSDNSVSKS  100 (108)
T ss_dssp             EEEEEEECTTTCCEEEE
T ss_pred             EEEEEEecCCCCcEEEe
Confidence            99999875444333333

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.24  E-value=3.1e-11  Score=83.77  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=67.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..+..+.+.+|++|+|.|.........+.|||.........+.............++.+..+.......|.|.+++++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            55667777799999999999987766668999997755444433333333333445677777665666778999999999


Q ss_pred             CCeeEEEEEEEc
Q psy16652        155 DAGIYKCEVIIS  166 (384)
Q Consensus       155 d~G~Y~C~~~~~  166 (384)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1lp9e1          84 DSALYYCALFLA   95 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCccceEEEEcC
Confidence            999999987643

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.8e-12  Score=81.85  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +|.|.+.|....+.+|++++|.|.+.+.+.+ .+.|++++...                          ......|.|.+
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~i~~   54 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS--------------------------EETNSSLNIVN   54 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEEC--------------------------SCCSSEEEECS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeee--------------------------ecccceeEECC
Confidence            4788888888899999999999999887755 45566654321                          11123699999


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      ++.+|+|.|+|++.+   ...+..+.|.|.
T Consensus        55 v~~~d~G~Y~C~a~~---s~~S~~v~l~V~   81 (82)
T d1f2qa1          55 AKFEDSGEYKCQHQQ---VNESEPVYLEVF   81 (82)
T ss_dssp             CCGGGCEEEEEECTT---SSCCCCEEEEEE
T ss_pred             CChhhCCcEEEEecC---CCCcccEEEEEE
Confidence            999999999999753   344556677664

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.24  E-value=4.1e-11  Score=81.88  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ....+.|.|.+++.
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~   80 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--cCCEEEEEEcccCc
Confidence            3566777888999999999998765556679999987654333333222222222345777665  45678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|...
T Consensus        81 ~Dsa~YyCa~~   91 (107)
T d1j1pl_          81 EDFGMYFCQQA   91 (107)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCCEEEEEEcC
Confidence            99999999764

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.24  E-value=2.9e-11  Score=82.27  Aligned_cols=89  Identities=13%  Similarity=0.180  Sum_probs=62.2

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............|+....  ....+.|.|.+++.
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~   80 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLS   80 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--CCCeeeecccCCcc
Confidence            3556677788999999999998765555679999976443333322222222222455776655  45678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        81 ~Dsa~YyCa~~   91 (106)
T d1i8ka_          81 EDVGDYYCLQS   91 (106)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCEEEeEecC
Confidence            99999999764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.24  E-value=3.2e-11  Score=82.18  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=62.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..|..+.+.+|++|+|.|.........+.||+......+..+.............++....  ....+.|.|.+++.+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~   81 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD--SGKDYTLSITSLQTE   81 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSSEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec--CCCeEEeEEcccccc
Confidence            455677788899999999999876555579999977654433332222222223446776655  556789999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (107)
T d1ospl1          82 DVATYFCQQY   91 (107)
T ss_dssp             GCSEEEEEEC
T ss_pred             cCCcEEEeec
Confidence            9999999764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.24  E-value=7.1e-12  Score=85.82  Aligned_cols=73  Identities=21%  Similarity=0.344  Sum_probs=58.6

Q ss_pred             CCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc--ee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652        189 STRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SI--YRGNILKIPNITKTDRGTYYCVAQNGVGRG  261 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~--~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  261 (384)
                      ....+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....  ..  ...+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            3456789999999999997 6788999999999876643221  11  234579999999999999999999987765

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.7e-11  Score=84.75  Aligned_cols=104  Identities=21%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             eCcceeeeccCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      .|+.+.+.+|++|+|.|.+...   ....+.|++.........+............+++.+..+...+..+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            3566778999999999997543   2456889986654332333333333333345677777777888899999999999


Q ss_pred             CCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        155 DAGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      |+|.|.|.+... +......+.|.|.+.
T Consensus        85 DsG~Y~C~v~~~-~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          85 DSGRYKCGLGIN-SRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GCEEEEEEESCG-GGCCEEEEEEEEECC
T ss_pred             CCEEEEEEEEcC-CCCceEeEEEEEECC
Confidence            999999998533 233344577777654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.22  E-value=6.4e-11  Score=80.60  Aligned_cols=88  Identities=17%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..|..+.+.+|++|+|.|.........+.||+......+..+.............++....  ....+.|.|.+++++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~   80 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG--SGTEFTLTISGLQFD   80 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec--cCCEEEEEEcccccc
Confidence            456678888999999999998866556679999987654444333222222222345776665  456788999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|.+.
T Consensus        81 Dsa~YyCa~~   90 (106)
T d1op3k1          81 DFATYHCQHY   90 (106)
T ss_dssp             GCSEEEEEEE
T ss_pred             CCCcEeeeeC
Confidence            9999999865

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.22  E-value=6e-11  Score=80.90  Aligned_cols=89  Identities=13%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ....+.|.|.++++
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~   80 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG--SGTEFTLTISTLRP   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec--cCCEEEEEecccee
Confidence            4567788888999999999999876556789999987654444444333222222344666554  55678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|...
T Consensus        81 ~DsA~YyCa~~   91 (107)
T d1tjgl1          81 EDFATYYCQQL   91 (107)
T ss_dssp             GGCSEEEEEEC
T ss_pred             CcCceEEEEEC
Confidence            99999999754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.8e-12  Score=87.44  Aligned_cols=98  Identities=21%  Similarity=0.311  Sum_probs=62.0

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      |.+.....+..+.+|++++|.|.+. +.|.+.+.|++++...........     .....++..    ......|.|.++
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~-----~~~~~~~~~----~~~~~~l~I~~v   73 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTR-----AFSNSSYVL----NPTTGELVFDPL   73 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSS-----SCTTCCCCC----CTTTCCEEESSC
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeE-----EeeCCcEEE----eecccceEECCC
Confidence            3333334456688999999999984 678889999998876322111100     011111111    223447999999


Q ss_pred             CCCCCeeEEEEEEEccCcc-eeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNK-VSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v  179 (384)
                      +.+|+|.|+|.+.|..+.. .+..+.|.|
T Consensus        74 ~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          74 SASDTGEYSCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             CGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             CcccCcEEEEEEEECCCceEEEEEEEEEE
Confidence            9999999999999766543 244455544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=80.51  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ..+|.+.+.|....+.+|++++|.|.+.+.+.+. +.|++++...               .           ....+|.|
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~---------------~-----------~~~~~l~i   56 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI---------------S-----------SQASSYFI   56 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEE---------------E-----------SSCSEEEE
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceee---------------e-----------ecceeeEe
Confidence            3567888889889999999999999998877654 5555544320               0           11226999


Q ss_pred             eecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        149 KEIQETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      .+++.+|+|.|+|++.+   ...+..+.|.|
T Consensus        57 ~~~~~~d~G~Y~C~a~~---s~~S~~v~L~V   84 (84)
T d1fnla1          57 DAATVNDSGEYRCQTNL---STLSDPVQLEV   84 (84)
T ss_dssp             SSCCGGGCEEEEEECSS---SCCCCCEEEEE
T ss_pred             cCCcccCCEEEEEEccC---CCccccEEEEC
Confidence            99999999999999753   23455555554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.1e-11  Score=81.04  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=64.8

Q ss_pred             CceEEeecCceEEEEEEec-ccCCCeEEEEeCCCccccc----CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652        190 TRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALST----GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR  264 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~  264 (384)
                      +......+|+.+.|.|.+. +.|.+.+.|++++..+...    ......+.+|.|.+++.+|+|.|+|.+.|..|.. ..
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~   87 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RI   87 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeE-EE
Confidence            4456678899999999884 6788899999988655422    2234467799999999999999999999988875 66


Q ss_pred             EEEEEEEe
Q psy16652        265 NIAVEVEF  272 (384)
Q Consensus       265 ~~~l~v~~  272 (384)
                      .+.|.|..
T Consensus        88 ~~~L~V~~   95 (101)
T d1iray1          88 KISAKFVE   95 (101)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            67777753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.21  E-value=5.2e-11  Score=80.83  Aligned_cols=89  Identities=15%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.|||.........+.............++....  ....+.|.|.+++.
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~   80 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--SGSDYSLTISSLES   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--cCCEEEEEEhhhcc
Confidence            3456677788999999999999876556679999976554333232222222222344555554  45578999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        81 ~Dsa~YyCa~~   91 (107)
T d1c5cl1          81 EDFADYYCLQY   91 (107)
T ss_dssp             GGCSEEEEEEC
T ss_pred             cCCeEEEEecC
Confidence            99999999764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-11  Score=84.95  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=62.0

Q ss_pred             EeecCceEE---EEEEecccCCCeEEEEeCCCcccccCceeE-----------eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652        194 IVSEGQTVY---LYCYANGFPAPTISWRRDNSAALSTGGSIY-----------RGNILKIPNITKTDRGTYYCVAQNGVG  259 (384)
Q Consensus       194 ~~~~g~~~~---l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~  259 (384)
                      .+..|..+.   +.|.+.|.|.|.+.|++++..+........           ....|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            344444444   556889999999999999987765433221           124699999999999999999999999


Q ss_pred             CceeeEEEEEEEecCe
Q psy16652        260 RGMKRNIAVEVEFAPV  275 (384)
Q Consensus       260 ~~~~~~~~l~v~~~p~  275 (384)
                      .. +..+.|.|..+|.
T Consensus        88 ~~-~~~i~v~v~~~P~  102 (107)
T d1he7a_          88 QA-SASIMAAFMDNPF  102 (107)
T ss_dssp             EE-EEEEEECCCSCTT
T ss_pred             EE-EEEEEEEEEcCCC
Confidence            86 7788888877774

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=2.3e-11  Score=83.15  Aligned_cols=98  Identities=13%  Similarity=0.054  Sum_probs=64.6

Q ss_pred             eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceec-cCceee----eCCceEEeeCCCCceEEEEEeec
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM-SGSLII----HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +.+.+..+.+|++|+|.|.........+.|+|.........+.... ......    ..+|..+..     +.+|.|.++
T Consensus         4 i~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~-----ngSL~I~~v   78 (107)
T d1l6za1           4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-----NGSLLFQMI   78 (107)
T ss_dssp             EEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT-----TSCEEECSC
T ss_pred             EEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc-----cccEEEcCC
Confidence            3344455789999999998655556789999966543323222221 111112    234655543     247999999


Q ss_pred             CCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLNNKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  179 (384)
                      +.+|+|.|+|.+.+...+.....+.|.|
T Consensus        79 ~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          79 TMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             CchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            9999999999998666665666666655

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.20  E-value=8.7e-11  Score=80.31  Aligned_cols=89  Identities=16%  Similarity=0.227  Sum_probs=62.4

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ......|.|.+++.
T Consensus         3 ~~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~   80 (107)
T d1kcvl1           3 VMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG--SATDFTLTISSVQA   80 (107)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec--cCCeeecEEHhhee
Confidence            3456677788999999999999866555579999976554333333222222122345666655  45678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        81 ~DSa~YyCa~~   91 (107)
T d1kcvl1          81 DDDADYYCGQS   91 (107)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEec
Confidence            99999999764

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.1e-11  Score=82.51  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=60.7

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee----------------EeccEEEEcCCCCCCCe-EEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI----------------YRGNILKIPNITKTDRG-TYYC  252 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d~G-~Y~C  252 (384)
                      .....+..|+++.|.|.+.+.|.+.+.|++++..+.......                .....|.|.+++.+|.| .|+|
T Consensus         9 ~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3           9 NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             SEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             CCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            344567889999999999999999999999887664332211                11247999999999999 5999


Q ss_pred             EEEeCCCCceeeEEEEE
Q psy16652        253 VAQNGVGRGMKRNIAVE  269 (384)
Q Consensus       253 ~~~~~~~~~~~~~~~l~  269 (384)
                      .|.|..|.. +..+.|.
T Consensus        89 ~A~N~~G~~-~~~i~L~  104 (107)
T d1iray3          89 FAKNTHGID-AAYIQLI  104 (107)
T ss_dssp             EEECSSCEE-EEEEEEE
T ss_pred             EEEeCCCeE-EEEEEEE
Confidence            999999875 5555543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=1.9e-10  Score=81.76  Aligned_cols=107  Identities=19%  Similarity=0.236  Sum_probs=68.6

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCc------eeeeCCceEEeeCC-CCceE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGS------LIIHDSRFQLTTDP-ETSTY  144 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~  144 (384)
                      +..+...+.+.+|++|+|.|.+...   ....+.|++.+...   ...+...+.      ......|..+..+. ..++.
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   81 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSR---VVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKV   81 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CC---EEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcc---eEEEEEeccccccccccccceeEEEeeccccCCeE
Confidence            3444555778999999999998542   34569999976432   111111111      11122344444332 45578


Q ss_pred             EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652        145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII  185 (384)
Q Consensus       145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  185 (384)
                      +|.|.+++.+|+|.|+|.+.+. .+..+..+.|.|.+|...
T Consensus        82 sL~I~~v~~~D~G~Y~C~v~~~-~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          82 ALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEEECTTTT
T ss_pred             EEEEEEEchhHCeEEEEEEEEC-CCEEEEEEEEEEeCCCEE
Confidence            9999999999999999999754 455677788999876544

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.17  E-value=1.2e-10  Score=79.26  Aligned_cols=89  Identities=16%  Similarity=0.247  Sum_probs=62.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ....+.|.|.++++
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~   80 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SGTDFTLTINNVQS   80 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CCCeeeeeechhhe
Confidence            3556677778899999999998765545579999976554444333322222222345776655  45678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        81 ~DsA~YyCa~~   91 (107)
T d1mexl1          81 EDLAEYFCQQY   91 (107)
T ss_dssp             GGCSEEEEEEC
T ss_pred             ecceeEEEeEC
Confidence            99999999764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.17  E-value=2.1e-10  Score=79.07  Aligned_cols=90  Identities=19%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +...|..+.+.+|++|+|.|.........+.||+.........+.............++....+.....+.|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            45567777789999999999876655557999997765444444433333334455678777766778999999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|.+.
T Consensus        83 Dsa~YyCa~~   92 (111)
T d1bd2d1          83 DSAVYFCAAM   92 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccEEEEeecc
Confidence            9999999875

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.17  E-value=2.3e-10  Score=77.83  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ......|.|.+++.
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~l~~   80 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEP   80 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCT
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC--CCCEEEeEeeeeEe
Confidence            3566778888999999999999866555679999976554333332222111111233444444  55678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|...
T Consensus        81 ~Dsa~YyCA~~   91 (108)
T d1jhll_          81 EDFAMYICQQH   91 (108)
T ss_dssp             TCCSEEEEEEC
T ss_pred             ccceEEEEeeC
Confidence            99999999754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.16  E-value=1.7e-10  Score=78.60  Aligned_cols=89  Identities=17%  Similarity=0.273  Sum_probs=62.5

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+............+++....  ......|.|.+++.
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~   80 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG--SGQDYSLTISSLEY   80 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc--cCCEEEccccccCC
Confidence            3556677788999999999998766555679999976554334333322222122345676655  45668999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|...
T Consensus        81 ~Dsa~YyCa~~   91 (107)
T d1d5il1          81 EDMGIYYCLQY   91 (107)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCEEEEeeec
Confidence            99999999764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.16  E-value=1.7e-10  Score=79.06  Aligned_cols=89  Identities=16%  Similarity=0.221  Sum_probs=63.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|...+.....+.||+......+..+.............++....  ......|.|.+++.
T Consensus         5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~l~~   82 (109)
T d1bwwa_           5 QMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG--SGTDYTFTISSLQP   82 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             eEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC--CCCEeEEEEeecee
Confidence            4556677888999999999999876556679999977654443333222222222345666655  45567899999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        83 ~Dsa~YyCA~~   93 (109)
T d1bwwa_          83 EDIATYYCQQY   93 (109)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcCceEEEeec
Confidence            99999999864

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.7e-10  Score=78.59  Aligned_cols=84  Identities=14%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      |+.+.+.+|++|+|.|.........+.||+......+..+.............++....  ......|.|.+++++|+|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec--CCCEEEeEECCcChhhCCC
Confidence            34677899999999999876556679999987654444333322222222345666665  4567899999999999999


Q ss_pred             EEEEEE
Q psy16652        159 YKCEVI  164 (384)
Q Consensus       159 Y~C~~~  164 (384)
                      |.|...
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.5e-10  Score=81.44  Aligned_cols=105  Identities=19%  Similarity=0.284  Sum_probs=67.6

Q ss_pred             eeeCcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCcccceeccCce-e-----eeCCceEEeeCCCCceEE
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKMEPLPISMSGSL-I-----IHDSRFQLTTDPETSTYI  145 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~  145 (384)
                      ...+.++.+..|++|+|.|.+...    ....+.|++.................. .     ...+|+.+..+...+..+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            345677788999999999997532    345799998765433232222222111 1     123566666655566778


Q ss_pred             EEEeecCCCCCeeEEEEEEEccC-cceeeeEEEEEe
Q psy16652        146 LSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVR  180 (384)
Q Consensus       146 L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~  180 (384)
                      |.|.+++.+|+|.|+|.+.+... ......+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999975432 233445666664

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.16  E-value=2.2e-10  Score=79.00  Aligned_cols=90  Identities=21%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      ...|..+.+.+|++|+|.|.........+.||+.........+.............++....+.....+.|.|.+++.+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            44566677899999999999865555579999976544434444333333344556666666556778899999999999


Q ss_pred             CeeEEEEEEE
Q psy16652        156 AGIYKCEVII  165 (384)
Q Consensus       156 ~G~Y~C~~~~  165 (384)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (110)
T d1u3ha1          83 SATYFCAASA   92 (110)
T ss_dssp             CSEEEECCEE
T ss_pred             ceeEeeeecC
Confidence            9999998763

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-10  Score=78.71  Aligned_cols=68  Identities=19%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             EEeecCceEEEEE------EecccCCCeEEEEeCCCcccccCc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652        193 VIVSEGQTVYLYC------YANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGR  260 (384)
Q Consensus       193 ~~~~~g~~~~l~C------~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  260 (384)
                      ..+..|....|.|      .+.+.|.|.+.|++++..+..... ....+..|.|.++..+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            4578899999999      557888999999999988765443 3456678999999999999999999987654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=99.14  E-value=1.1e-10  Score=79.11  Aligned_cols=83  Identities=19%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +.+.+.+|++|+|.|.........+.|||.........+.............++....  ......|.|.+++++|+|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST--SGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC--CCCccCceEcCcchhHCceE
Confidence            3667899999999998765444579999976554333222222222223345666555  45678999999999999999


Q ss_pred             EEEEE
Q psy16652        160 KCEVI  164 (384)
Q Consensus       160 ~C~~~  164 (384)
                      .|.+.
T Consensus        84 yCA~~   88 (103)
T d8faba1          84 YCQAW   88 (103)
T ss_dssp             EEEEE
T ss_pred             Eeeec
Confidence            99765

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2.9e-10  Score=79.56  Aligned_cols=92  Identities=21%  Similarity=0.409  Sum_probs=63.1

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCC---cccceecc-Cceee------eCCceEEeeCCCC
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKM---EPLPISMS-GSLII------HDSRFQLTTDPET  141 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~-~~~~~------~~~~~~~~~~~~~  141 (384)
                      +|.+...|..+.+.+|++|+|.|.........+.|++.......   ..+..... .....      ...++..... ..
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~   79 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD-TN   79 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE-TT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECC-CC
Confidence            47788899999999999999999987766778999996543221   11221111 11111      1124443332 45


Q ss_pred             ceEEEEEeecCCCCCeeEEEEEE
Q psy16652        142 STYILSIKEIQETDAGIYKCEVI  164 (384)
Q Consensus       142 ~~~~L~i~~~~~~d~G~Y~C~~~  164 (384)
                      ..++|.|.+++.+|+|.|.|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEe
Confidence            67899999999999999999875

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.14  E-value=8.6e-10  Score=76.16  Aligned_cols=90  Identities=14%  Similarity=0.180  Sum_probs=69.2

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|...+ ....+.||+.........+.............++.+..+.......|.|.+++.
T Consensus         2 ~l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (115)
T d1ogad1           2 LLEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP   80 (115)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred             ceEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence            3566677888999999999998754 345799999776544444444444444566678878777778889999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        81 ~Dsa~YyCa~~   91 (115)
T d1ogad1          81 GDTGLYLCAGA   91 (115)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeeEccccc
Confidence            99999999875

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=2.3e-10  Score=81.36  Aligned_cols=91  Identities=15%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             CCcccccCCcEEEEEEEeccC---CCeEEEEECCEEe-----cCC--------Cce--eeeeeeccCccccceEEEeecC
Q psy16652        281 PRQGQALQYDAILECHVEAYP---PPAIVWIKDGVQI-----MNN--------QHY--SVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~-----~~~--------~~~--~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      ..+.+..|+.++|.|.+....   ...+.|++.+...     ...        ..+  ............+.+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            346678999999999986432   2368999865321     000        001  0111111112235689999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652        343 RRQFGQYACKAANKYGSAQKEIELFDRET  371 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  371 (384)
                      .+|+|.|.|.+.+..+..+..+.|.|.+|
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            99999999999999999999999999875

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.2e-11  Score=81.91  Aligned_cols=84  Identities=10%  Similarity=0.048  Sum_probs=60.4

Q ss_pred             ceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652        191 RSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI  266 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  266 (384)
                      ....+.+|+.++|.|.+.| .|.+  ++.|++++..+....... .....|.|.....+|+|.|+|.|+|..+.. ...+
T Consensus        12 ~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~-~~~~   90 (103)
T d1iama1          12 LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ-GLEL   90 (103)
T ss_dssp             CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG-TSCE
T ss_pred             CCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCc-cCeE
Confidence            3445889999999999976 5655  588999987765432211 124579999999999999999999988765 3445


Q ss_pred             EEEEEecCe
Q psy16652        267 AVEVEFAPV  275 (384)
Q Consensus       267 ~l~v~~~p~  275 (384)
                      .+.+..++.
T Consensus        91 ~~~~s~p~~   99 (103)
T d1iama1          91 FENTSAPYQ   99 (103)
T ss_dssp             EEEECCCEE
T ss_pred             eeeEcCCCE
Confidence            555554443

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=99.13  E-value=1.9e-10  Score=78.74  Aligned_cols=88  Identities=16%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      ++..|..+.+.+|++|+|.|..... ....+.||+......+..+.............++....  ....+.|.|.+++.
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~L~I~~~~~   81 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--SGTDFTLTISRLEP   81 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--CCCEEEEEehHhee
Confidence            4566777889999999999987543 34569999987654444443333333233445666655  45578999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        82 ~Dsa~YyCa~~   92 (108)
T d2fx7l1          82 EDFAVYYCQQY   92 (108)
T ss_dssp             GGCSEEEEEEC
T ss_pred             cccEEEeeecC
Confidence            99999999764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.13  E-value=3.2e-10  Score=78.70  Aligned_cols=91  Identities=13%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEee
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++..+..+.+.+|++|+|.|..... ....+.||+.........+.........   ...+||.+..+.....+.|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            4556777788999999999988653 4568999996544333333322222221   13468888776667778999999


Q ss_pred             cCCCCCeeEEEEEEE
Q psy16652        151 IQETDAGIYKCEVII  165 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~  165 (384)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsg~YyCa~~~   97 (116)
T d1tvda_          83 VRTEDSATYYCAFTL   97 (116)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             ccccccccceeeEec
Confidence            999999999998764

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.13  E-value=4.1e-10  Score=77.31  Aligned_cols=91  Identities=13%  Similarity=0.192  Sum_probs=68.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..+..+.+.+|++|+|.|.........+.||+......+..+.............++....+.......|.|.+++++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            55667778899999999999876655557999997755444444443333344456778777666677889999999999


Q ss_pred             CCeeEEEEEEE
Q psy16652        155 DAGIYKCEVII  165 (384)
Q Consensus       155 d~G~Y~C~~~~  165 (384)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCA~~~   93 (110)
T d1ac6a_          83 DSAVYYCALSG   93 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCcccceeecC
Confidence            99999998753

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.12  E-value=3.3e-10  Score=77.00  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ....+.|.|.++++
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~L~I~~~~~   79 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG--SGRDYSFSISNLEP   79 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCG
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec--CCCEeeeEehhhcc
Confidence            3566677888999999999998765555579999976443222222221111122345666655  45678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        80 ~DsA~YyCa~~   90 (106)
T d1a0ql1          80 EDIATYYCLQY   90 (106)
T ss_dssp             GGCSEEEEEEC
T ss_pred             cCCEeEEEEEe
Confidence            99999999864

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.9e-10  Score=79.67  Aligned_cols=85  Identities=18%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             cceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCc---eeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGS---LIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ....+.+|++|+|.|.+.+.  ....+.|+|.........+.......   .....+|+.+..+...+..+|.|.+++.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            34567899999999987642  45679999976544333333222211   12344688888777778899999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|.+.
T Consensus        87 Dsg~Y~Cav~   96 (113)
T d1smoa_          87 DSGLYQCVIY   96 (113)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCceEEEEEE
Confidence            9999999885

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.10  E-value=2.8e-10  Score=77.64  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+......+..+.............++....  ....+.|.|.++++
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~   80 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLP   80 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec--cCCEEEEEEccccc
Confidence            3556677888999999999999865555579999977654444433222222222345666554  56678999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|.+.
T Consensus        81 ~DSa~YyCA~~   91 (109)
T d1mqkl_          81 EDFGSYYCQHH   91 (109)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCeeEEEeee
Confidence            99999999865

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.4e-11  Score=79.16  Aligned_cols=82  Identities=10%  Similarity=0.148  Sum_probs=56.9

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccC-----ccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD-----EFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      ....+|++++|.|.+. .|.+.+.|++++..+...............     ...+.+|+|.+++.+|+|.|.|.|.|..
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            4567899999999865 488899999998776422111111100000     1135689999999999999999999988


Q ss_pred             cceEEEEE
Q psy16652        358 GSAQKEIE  365 (384)
Q Consensus       358 g~~~~~~~  365 (384)
                      ++.+..++
T Consensus        84 ~t~~~~l~   91 (93)
T d1ccza1          84 DTMKFFLY   91 (93)
T ss_dssp             SCEEEEEE
T ss_pred             cEEEEEEE
Confidence            76654443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.08  E-value=1.2e-09  Score=72.50  Aligned_cols=78  Identities=22%  Similarity=0.338  Sum_probs=59.8

Q ss_pred             cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEE
Q psy16652         87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVII  165 (384)
Q Consensus        87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  165 (384)
                      |++|+|.|.........+.||+......++. ++..........+++....+......+|.|.+++++|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~-l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPEL-IMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEE-EEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCccccc-ceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            7899999998766666899999766543332 33334444566778888776677788999999999999999998863

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=99.08  E-value=7.6e-10  Score=75.78  Aligned_cols=89  Identities=18%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .++..|..+.+.+|++|+|.|.....    ....+.||+.........++............|+....  ....+.|.|.
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~~~~~~L~I~   80 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--SGTDFTLNIH   80 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--CCCchhcccc
Confidence            35566777889999999999987532    23359999976554333333222221112345776655  4567899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++++|+|.|.|.+.
T Consensus        81 ~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          81 PVEEEDAATYYCSHI   95 (111)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             cccccCCceEEEEEC
Confidence            999999999999764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=99.08  E-value=9e-10  Score=75.69  Aligned_cols=89  Identities=16%  Similarity=0.240  Sum_probs=63.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .++..|..+.+.+|++|+|.|.....     ....+.||+......+..+.............++....  ....+.|.|
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I   81 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI   81 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEE
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCcc
Confidence            35667778889999999999997542     23579999977655444433332222223455666655  566789999


Q ss_pred             eecCCCCCeeEEEEEE
Q psy16652        149 KEIQETDAGIYKCEVI  164 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~  164 (384)
                      .+++.+|+|.|.|...
T Consensus        82 ~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          82 SRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             SSCCGGGCEEEEEEEC
T ss_pred             CCCCcccCEEEEEEEC
Confidence            9999999999999643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=99.07  E-value=5e-10  Score=76.82  Aligned_cols=88  Identities=16%  Similarity=0.207  Sum_probs=59.7

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++..|..+.+.+|++|+|.|.....    ....+.||+......+..++............++....  ....+.|.|.+
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~--~~~~~~L~I~~   81 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDP   81 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec--CCCEEEEEEcc
Confidence            4566777888999999999987432    23459999976554444333222211111234555544  56778999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|+|.|.|.+.
T Consensus        82 ~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          82 VEADDVATYYCQQT   95 (111)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccccCccEEEeec
Confidence            99999999999764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.06  E-value=1.5e-09  Score=74.37  Aligned_cols=85  Identities=13%  Similarity=0.188  Sum_probs=59.2

Q ss_pred             CcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      |+.+.+.+|++|+|.|..... ....+.||+.........+.......  ....+..+..........|.|.+++.+|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNN--ETNEMASLIITEDRKSSTLILPHATLRDTA   82 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSC--EECSSCEEEECTTCSEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeecee--cccccceeeecccCCeeeehhcccccCCce
Confidence            446778999999999987543 34468999976544333333322222  233444455555677899999999999999


Q ss_pred             eEEEEEEE
Q psy16652        158 IYKCEVII  165 (384)
Q Consensus       158 ~Y~C~~~~  165 (384)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (110)
T d2esvd1          83 VYYCIVVR   90 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99998863

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.3e-11  Score=79.71  Aligned_cols=79  Identities=19%  Similarity=0.313  Sum_probs=51.9

Q ss_pred             eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCC-CCceEEEEEeecCCCCC
Q psy16652         82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDP-ETSTYILSIKEIQETDA  156 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~  156 (384)
                      +...+|++|+|.|.........+.|++.....    .........    ....+|+....+. ..++.+|.|.+++.+|+
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~Ds   79 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIK----ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS   79 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCE----EEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGC
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCce----eeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHC
Confidence            44689999999999877667789999865431    111111111    1123344433221 34567899999999999


Q ss_pred             eeEEEEEE
Q psy16652        157 GIYKCEVI  164 (384)
Q Consensus       157 G~Y~C~~~  164 (384)
                      |.|+|.+.
T Consensus        80 G~Y~C~v~   87 (97)
T d2nxyb1          80 DTYICEVE   87 (97)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEe
Confidence            99999984

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=99.06  E-value=5.9e-10  Score=77.35  Aligned_cols=89  Identities=16%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             eeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccc---eeccCcee-----eeCCceEEeeCCCCceEEE
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLP---ISMSGSLI-----IHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~L  146 (384)
                      ...|....+.+|++|+|.|.+.+ .....+.||+......+..+.   ........     ....++....+.......|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            45677788999999999999876 345579999865433223221   11112111     2345666666667778899


Q ss_pred             EEeecCCCCCeeEEEEEE
Q psy16652        147 SIKEIQETDAGIYKCEVI  164 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~  164 (384)
                      .|.+++.+|+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999875

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.05  E-value=2e-10  Score=78.28  Aligned_cols=89  Identities=15%  Similarity=0.221  Sum_probs=61.9

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .++..|..+.+.+|++|+|.|.........+.||+......+..+.............++....  ....+.|.|.++++
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~   80 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG--SGTDYSLTISNLEP   80 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE--ETTEEEEECSCCCS
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc--cCCEEEEEEeEeee
Confidence            3556677888999999999998766555679999977654333333222222222334555444  45578999999999


Q ss_pred             CCCeeEEEEEE
Q psy16652        154 TDAGIYKCEVI  164 (384)
Q Consensus       154 ~d~G~Y~C~~~  164 (384)
                      +|+|.|.|...
T Consensus        81 ~Dsa~YyCa~~   91 (107)
T d3cx5k1          81 EDIATYFCQHH   91 (107)
T ss_dssp             CCCSEEEEEEC
T ss_pred             cCCCcEEeeeC
Confidence            99999999753

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.05  E-value=7.4e-10  Score=76.75  Aligned_cols=92  Identities=14%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceecc-CceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMS-GSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      .++..+..+.+.+|++|+|.|.........+.||+.........+..... ........++............|.|.+++
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH   81 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence            35566777889999999999998765566799999765433333332222 22233345666655445556789999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          82 MSDAAEYFCAVSE   94 (115)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccCCccceeeecC
Confidence            9999999999864

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=8.5e-10  Score=74.91  Aligned_cols=100  Identities=22%  Similarity=0.390  Sum_probs=68.0

Q ss_pred             cceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCc---eeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         80 QEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGS---LIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +...+.+|++|+|.|.+.+.  ....+.|+|.........++......   .....+|+.+..+...+...|.|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            45668999999999998753  45579999965443333333222211   12335789998877888999999999999


Q ss_pred             CCeeEEEEEEEccCcc--eeeeEEEEE
Q psy16652        155 DAGIYKCEVIISLNNK--VSAEVELIV  179 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~--~~~~~~l~v  179 (384)
                      |+|.|.|.+.......  ....+.|.|
T Consensus        83 Dsa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          83 DSGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             GCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            9999999886443321  123455554

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.05  E-value=8.8e-10  Score=76.50  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ++..+..+.+.+|++|+|.|..... ....+.||+.........+... .........+++.+..+.......|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            4556777788999999999987543 3446899997654332222222 2222233446777777656677899999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          82 IEDSAVYFCAMRG   94 (115)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccccccccceeec
Confidence            9999999998863

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=6.4e-10  Score=75.77  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .++.+ +.+.+.+|++|+|.|......   ...+.||+......+..+............+|+....  ....+.|.|.+
T Consensus         3 ~~tQ~-~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~--~~~~~~L~I~~   79 (110)
T d1oaql_           3 VVTQE-SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGNKAALTITG   79 (110)
T ss_dssp             CEEEC-SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEES
T ss_pred             CEeeC-CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc--cccceeeecCC
Confidence            34443 467789999999999986432   2349999976543333332222111112346777666  34678999999


Q ss_pred             cCCCCCeeEEEEEEE
Q psy16652        151 IQETDAGIYKCEVII  165 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~  165 (384)
                      ++.+|+|.|.|....
T Consensus        80 ~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          80 AQTEDEAIYFCALWY   94 (110)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCccccEeEEEEccc
Confidence            999999999998763

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.04  E-value=1e-09  Score=75.95  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ++..+..+.+.+|++|+|.|..... ....+.||+.........+... ..........++.+........+.|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            5566777789999999999987543 3446899997655433333322 2222233455666666666778999999999


Q ss_pred             CCCCeeEEEEEEEc
Q psy16652        153 ETDAGIYKCEVIIS  166 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~  166 (384)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          83 VVDSAVYFCALSGF   96 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCCCceEeCCCC
Confidence            99999999987643

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.03  E-value=6.4e-10  Score=77.08  Aligned_cols=91  Identities=13%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      .++.++..+.+.+|++|+|.|.........+.||+......+..+... ..........+...........+.|.|.+++
T Consensus         2 sV~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1i9ea_           2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH   81 (115)
T ss_dssp             EEECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence            355666678899999999999987665667899996554433433322 2222233344555555556667889999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      .+|+|.|.|.+.
T Consensus        82 ~~Dsg~YyCa~~   93 (115)
T d1i9ea_          82 WSDSAVYFCAVS   93 (115)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccceeccccc
Confidence            999999999875

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=99.03  E-value=2e-09  Score=73.86  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      |+.+.+.+|++|+|.|...+.  ....+.||+.........+............+++....  ....+.|.|.+++++|+
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Ds   84 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--SGTSATLGITGLQTGDE   84 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGC
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--CCCEeeeEEeeeccccC
Confidence            346778999999999987653  34569999976554433333222222223345666655  44568999999999999


Q ss_pred             eeEEEEEEE
Q psy16652        157 GIYKCEVII  165 (384)
Q Consensus       157 G~Y~C~~~~  165 (384)
                      |.|.|.+..
T Consensus        85 a~YyCA~~~   93 (111)
T d1rzfl1          85 ADYYCGTWD   93 (111)
T ss_dssp             SEEEEEEEE
T ss_pred             cceEEeecC
Confidence            999998763

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.9e-10  Score=78.49  Aligned_cols=92  Identities=10%  Similarity=0.184  Sum_probs=58.2

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+.+.+.+..+.+|+.++|.|.+.+.   +.+.++|++++....              .................|.|..
T Consensus         4 ~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~--------------~~~~~~~~~~~~~~~s~l~~~~   69 (106)
T d1zxqa1           4 QVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH--------------YETFGKAAPAPQEATATFNSTA   69 (106)
T ss_dssp             CCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEE--------------EEECCSSTTCTTCEEEEEEEEC
T ss_pred             CCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEee--------------ecccceEeecccceeEEEEEee
Confidence            34455666778999999999999873   345799999876421              1111111111133345688888


Q ss_pred             cCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      .+.+|.|.|+|+|.|..+. ....+.+.+.
T Consensus        70 ~~~d~g~~ytC~A~n~~~~-~~~~~~~~~s   98 (106)
T d1zxqa1          70 DREDGHRNFSCLAVLDLMS-RGGNIFHKHS   98 (106)
T ss_dssp             CGGGGGCEEEEEEEEECGG-GTCCEEEEEC
T ss_pred             ehhcCCcEEEEEEEecCCC-CCCeeEeccc
Confidence            8888888999999976542 2333444443

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=99.03  E-value=1.7e-09  Score=74.22  Aligned_cols=87  Identities=15%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ++..|..+.+.+|++|+|.|...+.     ....+.||+......+..++............++....  ....+.|.|.
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~--s~~~~~L~Is   81 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG--SGTAFTLRIS   81 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--CSSEEEEEES
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec--CCCEEEEEEC
Confidence            4555667778999999999987542     24579999977554333333222211112234555544  5677899999


Q ss_pred             ecCCCCCeeEEEEE
Q psy16652        150 EIQETDAGIYKCEV  163 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~  163 (384)
                      +++.+|+|.|.|..
T Consensus        82 ~~~~~DsAvYyCa~   95 (112)
T d1mjul1          82 RVEAEDVGVYYCLQ   95 (112)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             CccccCCceEEEEe
Confidence            99999999999954

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=99.02  E-value=2.3e-09  Score=73.42  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             cceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         80 QEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      +.+.+.+|++|+|.|...+.  ....+.||+.........+............+++....  ....+.|.|.+++.+|+|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--SGTSASLAISGLESEDEA   85 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--CCCeeeeEecccCcccCc
Confidence            35678999999999998654  35679999977654444333222222223345666655  456789999999999999


Q ss_pred             eEEEEEEE
Q psy16652        158 IYKCEVII  165 (384)
Q Consensus       158 ~Y~C~~~~  165 (384)
                      .|.|....
T Consensus        86 ~YyCA~~~   93 (114)
T d2rhea_          86 DYYCAAWN   93 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeecC
Confidence            99998763

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=99.02  E-value=1.5e-09  Score=74.58  Aligned_cols=86  Identities=14%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      |+.+.+.+|++|+|.|...+..  ...+.|+|.........+............+++....+.......|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            4567789999999999986543  34599999764432222222222222234567877776677789999999999999


Q ss_pred             eeEEEEEE
Q psy16652        157 GIYKCEVI  164 (384)
Q Consensus       157 G~Y~C~~~  164 (384)
                      |.|.|...
T Consensus        87 a~YyCA~~   94 (111)
T d1cd0a_          87 ADYYCQSY   94 (111)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEeec
Confidence            99999865

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.02  E-value=1.4e-10  Score=79.86  Aligned_cols=70  Identities=27%  Similarity=0.407  Sum_probs=55.1

Q ss_pred             EEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCce--------eEeccEEEEcCCCCCCCe---EEEEEEEeCCCC
Q psy16652        193 VIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGS--------IYRGNILKIPNITKTDRG---TYYCVAQNGVGR  260 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~  260 (384)
                      ..+.+|+++.|.|.+ .|.|.|.+.|++++..+......        ...+.+|.|.+++.+|+|   .|.|.|.|..|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            346789999999997 89999999999987765433211        123568999999888776   799999999887


Q ss_pred             ce
Q psy16652        261 GM  262 (384)
Q Consensus       261 ~~  262 (384)
                      ..
T Consensus        92 ~~   93 (111)
T d1biha2          92 EE   93 (111)
T ss_dssp             SC
T ss_pred             ce
Confidence            63

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=4.5e-10  Score=75.29  Aligned_cols=87  Identities=14%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             ccccCCcEEEEEEEec-cC-CCeEEEEECCEEecCCCceeeeeee--ccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        284 GQALQYDAILECHVEA-YP-PPAIVWIKDGVQIMNNQHYSVSHFA--TSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ...+|++++|.|.... .. ...|.|++++..+..-.+.......  ......+.+|+|.+++.+|+|.|+|.+.+..|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            4567999999996432 22 2379999998776321100000000  001123578999999999999999999999998


Q ss_pred             e--EEEEEEEEee
Q psy16652        360 A--QKEIELFDRE  370 (384)
Q Consensus       360 ~--~~~~~l~v~~  370 (384)
                      .  ++++.|.|.+
T Consensus        86 ~~~~~~~~L~V~E   98 (98)
T d1hnga1          86 RILNKALDLRILE   98 (98)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEC
Confidence            6  6778888764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=99.01  E-value=1.8e-09  Score=74.33  Aligned_cols=83  Identities=18%  Similarity=0.397  Sum_probs=61.4

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ++..|..+.+.+|++|+|.|...+.  ....+.||+......+..+        ....+++....+.....+.|.|.+++
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~L~I~~l~   74 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQS--------ISIGGRYVETVNKGSKSFSLRISDLR   74 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEE--------CCCBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceee--------eeecccccceeECCCCceeeeecccc
Confidence            5566778888999999999998754  3457999996543222211        12345666666556677899999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      .+|+|.|.|.+..
T Consensus        75 ~~Dsa~YyCa~~~   87 (113)
T d1vesa_          75 VEDSGTYKCQAFY   87 (113)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCcceEeeeeec
Confidence            9999999999863

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.00  E-value=8.8e-09  Score=71.68  Aligned_cols=91  Identities=22%  Similarity=0.354  Sum_probs=64.5

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceee-----eCCceEEeeCCCCceEEEE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLII-----HDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~  147 (384)
                      +..++..+.+.+|++|+|.|.+.+.  ....+.||+.......+.+......+...     ..+||.+..+.......|.
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            4444555667899999999998764  35579999976554444443322222211     2457888876666788999


Q ss_pred             EeecCCCCCeeEEEEEEE
Q psy16652        148 IKEIQETDAGIYKCEVII  165 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~  165 (384)
                      |.+++.+|+|.|.|....
T Consensus        84 i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ccccccccCcEEEEeeeC
Confidence            999999999999998763

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.2e-10  Score=79.14  Aligned_cols=88  Identities=20%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             CcceeeeccCcEEEEEEeecC-------CCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEEEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA-------DDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +..+.+.+|++|+|.|.+...       ....+.|++.........+.....+..   ....+|+.+..+...++++|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            456678999999999998532       123578998765543333333322221   1234577877766677889999


Q ss_pred             eecCCCCCeeEEEEEEEc
Q psy16652        149 KEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~  166 (384)
                      .+++.+|+|.|.|++...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999743

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=99.00  E-value=1.9e-09  Score=73.75  Aligned_cols=88  Identities=16%  Similarity=0.220  Sum_probs=59.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .++..|..+.+.+|++|+|.|.....     ....+.||+.........+.............++....  ....+.|.|
T Consensus         3 ~lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~--~~~~~~L~I   80 (112)
T d1ncwl1           3 VMTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG--SGTDFTLKI   80 (112)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred             cEeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC--CCCEEEEEE
Confidence            34566777889999999999986432     23469999976554333333222221112235665544  456789999


Q ss_pred             eecCCCCCeeEEEEE
Q psy16652        149 KEIQETDAGIYKCEV  163 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~  163 (384)
                      .+++++|+|.|.|..
T Consensus        81 ~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          81 SRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             CccccCcCEeEEEEc
Confidence            999999999999954

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.7e-09  Score=73.62  Aligned_cols=90  Identities=16%  Similarity=0.362  Sum_probs=62.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCccc-ceec-cCcee----eeCCceEEeeCCCCceEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPL-PISM-SGSLI----IHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~~~~~~L  146 (384)
                      .+.+.|....+.+|++|+|.|.+... ....+.|||.........+ .+.. .....    ....|+....  ......|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L   79 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--LGDTFVL   79 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--ETTEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--CCCChhc
Confidence            35667888889999999999998654 3457999997755433322 2221 11111    1234666655  4457889


Q ss_pred             EEeecCCCCCeeEEEEEEE
Q psy16652        147 SIKEIQETDAGIYKCEVII  165 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~~  165 (384)
                      .|.+++.+|+|.|.|.+..
T Consensus        80 ~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          80 TLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EEccCCCCCCEEEeEeEcC
Confidence            9999999999999999863

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.9e-10  Score=77.97  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=67.0

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccc-eeccCce------eeeCCceEEeeCC-CC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLP-ISMSGSL------IIHDSRFQLTTDP-ET  141 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~-~~  141 (384)
                      .++.+...+.+.+|++|+|.|.+...+    ...+.|++........... +......      ....+|..+..+. ..
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            444444556789999999999986532    3468999866543322221 1111111      1123455555432 34


Q ss_pred             ceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        142 STYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       142 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      +..+|.|.+++.+|+|.|.|.+.+. .+.....+.|.|.
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~-~~~~~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKA-PGVANKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEEC-CCeEEeEEEEEEE
Confidence            5678999999999999999999854 3455666677663

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.99  E-value=2.5e-09  Score=72.41  Aligned_cols=87  Identities=15%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..|..+.+.+|++|+|.|.... ....+.||+.........+.............++....  ....+.|.|.+++.+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~   79 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG--SGTSYSLTISSMETE   79 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEec--CCCEEEEEecccCcc
Confidence            566778888999999999998643 34468999976543333332222221111234555444  456789999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|...
T Consensus        80 Dsa~YyCa~~   89 (104)
T d1yqvl1          80 DAATYYCQQW   89 (104)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCCeEEEEec
Confidence            9999999753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.98  E-value=2.3e-09  Score=73.34  Aligned_cols=82  Identities=17%  Similarity=0.388  Sum_probs=60.6

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +...|..+.+.+|++|+|.|...+.  ....+.||+......+..+        ...++++....+.....+.|.|.+++
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~--------~~~~gr~~~~~~~~~~~~~L~I~~l~   73 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEES--------ISKGGRYVETVNSGSKSFSLRINDLT   73 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEE--------CCCBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeee--------eccCCcEeeEEecCCceeeeEecCCc
Confidence            4566777888999999999987543  3568999996644222211        22345676666556667899999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      ++|+|.|.|.+.
T Consensus        74 ~~Dsa~YyCA~~   85 (112)
T d1sq2n_          74 VEDGGTYRCGLG   85 (112)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CccCEEEeEEEe
Confidence            999999999875

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.98  E-value=4.7e-09  Score=71.89  Aligned_cols=89  Identities=10%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .++..|....+.+|++|+|.|.... ....+.|||......+..+..........   ...++..... ....+.|.|.+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~   80 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRP-SQEQFSLILES   80 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEE-ETTEEEEEESS
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEec-cCCEEEEEECC
Confidence            4667788888999999999998754 34579999977654444333332221111   1234333332 34568899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|+|.|.|...
T Consensus        81 ~~~~Dsa~YyCa~~   94 (110)
T d2aq2a1          81 ATPSQTSVYFCASG   94 (110)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhhCEEEEEeeC
Confidence            99999999999875

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.97  E-value=2.1e-09  Score=72.96  Aligned_cols=84  Identities=18%  Similarity=0.184  Sum_probs=59.1

Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY  159 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  159 (384)
                      +.+.+.+|++|+|.|.........+.||+.........+.............++....  ......|.|.+++.+|+|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN--SGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec--CCCccceEEeeeccCCCEEE
Confidence            3567899999999998755445579999987654444443333322222345665555  46678999999999999999


Q ss_pred             EEEEEE
Q psy16652        160 KCEVII  165 (384)
Q Consensus       160 ~C~~~~  165 (384)
                      .|....
T Consensus        86 yCA~~~   91 (109)
T d1w72l1          86 YCQVWD   91 (109)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            998764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.7e-10  Score=77.02  Aligned_cols=76  Identities=17%  Similarity=0.183  Sum_probs=49.3

Q ss_pred             cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee--eCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652         80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII--HDSRFQLTTDPETSTYILSIKEIQETDAG  157 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (384)
                      +++.+..|++|+|.|... .|...+.|++++....    ..........  ...+..+    ...+.+|.|.+++.+|+|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~----~~~~~~~~~~~~~~~~~~~----~~~~~sL~I~~l~~~DsG   73 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVA----ELENSEFRAFSSFKNRVYL----DTVSGSLTIYNLTSSDED   73 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEE----EEETTEEEECGGGTTSEEE----CTTTCCEEECSCCGGGCE
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccc----eeeecceeeCCCccceEEE----cCCeeEEEEEecChhhCE
Confidence            345678999999999864 4777999999764311    1111111111  1122222    234567999999999999


Q ss_pred             eEEEEEE
Q psy16652        158 IYKCEVI  164 (384)
Q Consensus       158 ~Y~C~~~  164 (384)
                      .|+|++.
T Consensus        74 ~Y~c~~~   80 (93)
T d1ccza1          74 EYEMESP   80 (93)
T ss_dssp             EEEEECT
T ss_pred             EEEEEEE
Confidence            9999974

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.97  E-value=4.2e-09  Score=73.06  Aligned_cols=90  Identities=13%  Similarity=0.297  Sum_probs=63.7

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .++..|....+.+|++|+|.|...+.....+.|||.........+.........     ....++..... ....+.|.|
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i   81 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHA-SPTLSTLTV   81 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEEC-SSSEEEEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecc-ccccccccc
Confidence            356677778899999999999987666668999997655433333222221111     13456666543 456778999


Q ss_pred             eecCCCCCeeEEEEEE
Q psy16652        149 KEIQETDAGIYKCEVI  164 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~  164 (384)
                      .+++++|+|.|.|.+.
T Consensus        82 ~~~~~~Dsa~YyCa~~   97 (118)
T d2ij0c1          82 TSAHPEDSGFYVCSAL   97 (118)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccccccCceEEEEEe
Confidence            9999999999999875

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.96  E-value=5.8e-09  Score=71.66  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CcceeeeccCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD  155 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (384)
                      |..+.+.+|++|+|.|...+.   ....+.||+.........+.............++....  ....+.|.|.+++.+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SGNSASLTISGLQAED   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEECSCCGGG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CCCEeeEEeCcCcccc
Confidence            556778999999999997653   23469999977554333333333333333445666655  4557899999999999


Q ss_pred             CeeEEEEEE
Q psy16652        156 AGIYKCEVI  164 (384)
Q Consensus       156 ~G~Y~C~~~  164 (384)
                      +|.|.|...
T Consensus        85 sa~YyCa~~   93 (112)
T d1lgva1          85 EADYYCSSY   93 (112)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEeee
Confidence            999999875

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.96  E-value=1.6e-09  Score=75.28  Aligned_cols=91  Identities=21%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      .+...++.+.+.+|++++|.|...+..  ...+.||+.........+............+|+....+.......|.|.++
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            345556677789999999999987543  346999996544333333222222122234678777765667789999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +++|+|.|.|...
T Consensus        83 ~~~Dsa~YyCA~~   95 (120)
T d1hxma1          83 SERDEGSYYCACD   95 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccCCceeecCcc
Confidence            9999999999865

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.4e-10  Score=80.89  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEee--CCCCceEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTT--DPETSTYILS  147 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~  147 (384)
                      .+|.+.. ++...+.+|+++.|.|.+.+. +...+.|++++.....            ....++.+..  ........|.
T Consensus         6 ~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~------------~~~~~~~~~~~~~~~~~~s~L~   72 (115)
T d2crya1           6 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES------------GTSGRYTVETISTEEGVISTLT   72 (115)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECS------------EEETTEEEEEEEETTEEEEEEE
T ss_pred             cCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEee------------eeeeeEeeeeeccccCcEEEEE
Confidence            4666654 566778899999999999885 5667999998764211            1123333332  1123345799


Q ss_pred             EeecCCCC-CeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652        148 IKEIQETD-AGIYKCEVIISLNNKVSAEVELIVRRP  182 (384)
Q Consensus       148 i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~~~  182 (384)
                      |.+++..| +|.|+|.|.|.. |..+..+.|.|...
T Consensus        73 I~~v~~~D~~G~Y~C~A~N~~-G~~~~~~~L~V~~~  107 (115)
T d2crya1          73 ISNIVRADFQTIYNCTAWNSF-GSDTEIIRLKEQGS  107 (115)
T ss_dssp             CTTCCHHHHHSCEEEEEECSS-CEEEEEECCCCSCS
T ss_pred             EeccchhcCCeEEEEEEEECC-CeEEEEEEEEEECC
Confidence            99999999 699999998554 55777777877644

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.2e-09  Score=73.22  Aligned_cols=91  Identities=15%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             ceeeeccCcEEEEEEeec-C-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         81 EQIKDIAQTADLKCSVQY-A-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~-~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      .+....|++|+|.|.... . ....|.|++++...    ............+.++.+..     +.+|.|.+++.+|+|.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i----~~~~~~~~~~~~~~~~~~~~-----ngSL~I~nl~~~DsG~   74 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLV----AEFKRKMKPFLKSGAFEILA-----NGDLKIKNLTRDDSGT   74 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEE----EEEETTSCCEESSTTEEECT-----TSCEEESSCCGGGCEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccce----eEEccCCccccCCCeEEECC-----CccEEEeCCCHHHCEE
Confidence            345678999999997532 2 33579999965321    11222222233444544432     2469999999999999


Q ss_pred             EEEEEEEccCcc-eeeeEEEEEe
Q psy16652        159 YKCEVIISLNNK-VSAEVELIVR  180 (384)
Q Consensus       159 Y~C~~~~~~~~~-~~~~~~l~v~  180 (384)
                      |+|.+.+..+.. .+..+.|.|.
T Consensus        75 Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          75 YNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEETTCCEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEEEEEEE
Confidence            999998666553 4667778775

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=1.4e-09  Score=75.29  Aligned_cols=88  Identities=16%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      ++..|..+.+.+|++|+|.|.........+.||+.........+.............++....  ....+.|.|.+++.+
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~   81 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG--SGTDYTLTISSLQPE   81 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--EBTEEEEEECSCCGG
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC--CCCEEEEEcccCccC
Confidence            455677777899999999998765545579999976554333333222222222345665544  455688999999999


Q ss_pred             CCeeEEEEEE
Q psy16652        155 DAGIYKCEVI  164 (384)
Q Consensus       155 d~G~Y~C~~~  164 (384)
                      |+|.|.|...
T Consensus        82 DsavYyCa~~   91 (119)
T d1f3rb2          82 DVATYFCYQY   91 (119)
T ss_dssp             GCSEEEEEEE
T ss_pred             CCeEEEeecc
Confidence            9999999765

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.95  E-value=4.4e-11  Score=79.72  Aligned_cols=84  Identities=18%  Similarity=0.274  Sum_probs=60.0

Q ss_pred             ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652         81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK  160 (384)
Q Consensus        81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (384)
                      .+.|.+|++|+|.|.... ....+.|||......+..+.....+......+|+.+..+.......|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            346789999999998754 3457999996544433444433333444456677766554556678999999999999999


Q ss_pred             EEEEE
Q psy16652        161 CEVII  165 (384)
Q Consensus       161 C~~~~  165 (384)
                      |.+..
T Consensus        81 CA~~~   85 (96)
T d1ymmd1          81 CATDT   85 (96)
T ss_dssp             EEEEE
T ss_pred             EeEec
Confidence            98764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.95  E-value=4.2e-09  Score=72.38  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecC------CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYA------DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      .++..|..+.+.+|++|+|.|...+.      ....+.||+......+..+.............++....  ......|.
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~--s~~~~~L~   80 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG--SGTDFTLT   80 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEE
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC--CCCeEeEE
Confidence            35566788889999999999986532      22459999976544333333222222222345665554  56678899


Q ss_pred             EeecCCCCCeeEEEEEE
Q psy16652        148 IKEIQETDAGIYKCEVI  164 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~  164 (384)
                      |.+++++|+|.|.|...
T Consensus        81 I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          81 ITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             ecccccCCCeEEEeccc
Confidence            99999999999999753

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.93  E-value=4e-09  Score=72.53  Aligned_cols=85  Identities=12%  Similarity=0.203  Sum_probs=57.6

Q ss_pred             eCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      .|..+.+.+|++|+|.|...+.. ...+.|||.......+.+........  ...+..+..........|.|.+++.+|+
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   81 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNV--NNRMASLAIAEDRKSSTLILHRATLRDA   81 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSE--ECSSEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceec--cccccceeecccCCeeEEEEeecccccc
Confidence            35567789999999999976533 44599999765543343333322222  2233333434356678899999999999


Q ss_pred             eeEEEEEE
Q psy16652        157 GIYKCEVI  164 (384)
Q Consensus       157 G~Y~C~~~  164 (384)
                      |.|.|.+.
T Consensus        82 a~YyCa~~   89 (112)
T d1kgcd1          82 AVYYCILP   89 (112)
T ss_dssp             EEEEEECC
T ss_pred             eeEeeeEe
Confidence            99999764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.4e-09  Score=76.11  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             CcceeeeccCcEEEEEEeecC------CCccEEEEEeCCCCCCcccceeccC--ceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA------DDYPVIWMKMDTAKKMEPLPISMSG--SLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~------~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      |..+.+.+|++|+|.|.+...      ....+.|++........ .......  ......+|+.+..+...+.++|.|.+
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQV-VIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEE-EEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccce-eeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            556778999999999998632      12356788765542211 1111111  11224568888776667788999999


Q ss_pred             cCCCCCeeEEEEEEEcc
Q psy16652        151 IQETDAGIYKCEVIISL  167 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~  167 (384)
                      ++.+|+|.|.|++....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997443

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.92  E-value=1.4e-08  Score=69.67  Aligned_cols=88  Identities=17%  Similarity=0.276  Sum_probs=60.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEEEEEee
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++..|...++.+|++|+|.|.... ....+.|||......+..+..........    ...++..... ....+.|.|.+
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i~~   79 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT-GGTYSTLKVQP   79 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEESS
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC-CCCEEEEEECC
Confidence            345677788999999999998543 34579999987654444443322222221    2345554443 45567899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|+|.|.|.+.
T Consensus        80 ~~~~Dsa~YyCa~~   93 (111)
T d2esve1          80 AELEDSGVYFCASS   93 (111)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCCceEEEeee
Confidence            99999999999865

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.92  E-value=1.3e-08  Score=70.04  Aligned_cols=90  Identities=13%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE  153 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (384)
                      .+...|..+.+.+|++|+|.|.... ....+.||+.........+ +.........+.............+.|.|.+++.
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISL-FYLASGTKENGRLKSAFDSERARYSTLHIRDAQL   80 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEE-EEESSSEEEETTEEEECCSSSSSEEEEEECSCCG
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEE-EEeeeeeccccccceEEeecCCceeEEEECCCCH
Confidence            3566678888999999999999764 3457999997654332222 2222222222332233333355677899999999


Q ss_pred             CCCeeEEEEEEE
Q psy16652        154 TDAGIYKCEVII  165 (384)
Q Consensus       154 ~d~G~Y~C~~~~  165 (384)
                      +|+|.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (113)
T d1h5ba_          81 EDSGTYFCAAEA   92 (113)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             hHCEEEEEEecC
Confidence            999999998763

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.90  E-value=3.9e-09  Score=71.71  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      |..+.+.+|++|+|.|.........+.||+......+..+............+|+....  ......|.|.+++++|+|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--CCCEeeeeEcCccccCCce
Confidence            45677899999999998754444579999976543333332222221122345777665  4457889999999999999


Q ss_pred             EEEEEEE
Q psy16652        159 YKCEVII  165 (384)
Q Consensus       159 Y~C~~~~  165 (384)
                      |.|.+..
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998753

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.90  E-value=6.9e-09  Score=71.90  Aligned_cols=90  Identities=21%  Similarity=0.354  Sum_probs=63.2

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCc-ee---eeCCceEEeeCCCCceEEEEE
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGS-LI---IHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +..++..+.+.+|++|+|.|...+.  ....+.||+.......+.+....... ..   ....++.+..+.....+.|.|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            4444556667899999999987653  24569999987654444443322221 11   234577787776777889999


Q ss_pred             eecCCCCCeeEEEEEE
Q psy16652        149 KEIQETDAGIYKCEVI  164 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~  164 (384)
                      .+++.+|+|.|.|...
T Consensus        84 ~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             CSCCGGGCSEEEEEEC
T ss_pred             cccccccceeEEEEEc
Confidence            9999999999999764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.87  E-value=2.7e-08  Score=68.33  Aligned_cols=88  Identities=20%  Similarity=0.328  Sum_probs=59.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEEEEEee
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++..|...++.+|++|+|.|.... ....+.||+......+..+..........    ...++.... .......|.|.+
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~   79 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQR   79 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESS
T ss_pred             eEECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECC
Confidence            345677788899999999998543 44579999976554333333322222211    234554443 244567899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++++|+|.|.|.+.
T Consensus        80 ~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          80 TQQEDSAVYLCASS   93 (112)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcCCCEEEEEeee
Confidence            99999999999875

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=1e-08  Score=71.10  Aligned_cols=87  Identities=14%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             CcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      |..+.+.+|++|+|.|......   ...+.|+|.......+.+... .........+++....+.......|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            4556789999999999986532   235889997654322222221 112222233333333333566789999999999


Q ss_pred             CCeeEEEEEEE
Q psy16652        155 DAGIYKCEVII  165 (384)
Q Consensus       155 d~G~Y~C~~~~  165 (384)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998863

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.4e-08  Score=68.03  Aligned_cols=94  Identities=20%  Similarity=0.269  Sum_probs=60.8

Q ss_pred             ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ...+|.+...|.. .|..|++|+|.|.... +...+.|++++......             ..+  ...........+.|
T Consensus         4 ~lpkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~-------------~~~--~~~~~~~~~a~F~l   66 (99)
T d1ucta1           4 DFPMPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYRE-------------IGR--RLKFWNETDPEFVI   66 (99)
T ss_dssp             GSCCCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEE-------------CSE--ECC----CCCEEEE
T ss_pred             CCCCCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCcee-------------ccc--cccCCCCceEEEEe
Confidence            3467888887754 5889999999998653 45678899876531000             000  00000122346899


Q ss_pred             eecCCCCCeeEEEEEEEccCc-ceeeeEEEEE
Q psy16652        149 KEIQETDAGIYKCEVIISLNN-KVSAEVELIV  179 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v  179 (384)
                      .+++..|+|.|+|...+.... ..+..++|.|
T Consensus        67 ~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          67 DHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             cCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            999999999999998765432 3466677665

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.84  E-value=1.9e-08  Score=69.13  Aligned_cols=89  Identities=16%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEee
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .++..|..+++.+|++|+|.|.... ....+.||+......+..+..........   ...++..... ......|.|.+
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~   80 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA   80 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEEC-TTSCEEEECCS
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcC-CCCeEEEEecc
Confidence            4567788888999999999998643 34579999987654444444333222222   2245554432 34567899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|+|.|.|.+.
T Consensus        81 ~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          81 LELEDSAMYFCASS   94 (113)
T ss_dssp             CCGGGCEEECEEEE
T ss_pred             cCcCCceeEEEEee
Confidence            99999999999875

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2e-09  Score=74.15  Aligned_cols=84  Identities=19%  Similarity=0.263  Sum_probs=48.1

Q ss_pred             eeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCc--eeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         82 QIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGS--LIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      +.+..|++|+|.|.+....   ...+.|+......  ..+.....+.  .....++|..+.+...+..+|.|.+++.+|+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQEN--LVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTC--CEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeecccc--ceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHC
Confidence            4578999999999986432   2335555432211  1111111111  1112233333222234456899999999999


Q ss_pred             eeEEEEEEEcc
Q psy16652        157 GIYKCEVIISL  167 (384)
Q Consensus       157 G~Y~C~~~~~~  167 (384)
                      |.|.|.+....
T Consensus        82 G~Y~C~V~~~~   92 (110)
T d1ncna_          82 GLYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEecC
Confidence            99999997443

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.83  E-value=3.8e-08  Score=67.65  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=57.6

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEeecC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +..|..+++.+|++|+|.|.... ....+.||+.........+..........   ...++.... .......|.|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ-FSNSRSEMNVSTLE   80 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCC
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeecc-CcCCeeEEEECCCC
Confidence            45567788899999999998644 34579999965443333333222221111   233444433 24556799999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      ++|+|.|.|.+.
T Consensus        81 ~~Dsa~YyCA~~   92 (113)
T d2ntsp1          81 LGDSALYLCASS   92 (113)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceeeeeeee
Confidence            999999999876

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.79  E-value=3.5e-08  Score=67.93  Aligned_cols=87  Identities=11%  Similarity=0.273  Sum_probs=57.4

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEeecC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +..|..+.+.+|++|+|.|... .....+.||+.........+..........   ...++..... ....+.|.|.+++
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~   80 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSAQ   80 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSCC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcc-cCCeEEEEECcCC
Confidence            4456677789999999999975 345579999977654333333222222111   1223333322 4456789999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      .+|+|.|.|...
T Consensus        81 ~~DSa~YyCa~~   92 (114)
T d1ogae1          81 KNPTAFYLCASS   92 (114)
T ss_dssp             SCCCEEEEEEEE
T ss_pred             cCCceeEEEeec
Confidence            999999999775

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.79  E-value=3.8e-08  Score=66.85  Aligned_cols=84  Identities=20%  Similarity=0.339  Sum_probs=58.6

Q ss_pred             cceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccce-eccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         80 QEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPI-SMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ....+++|++|+|.|.+.+..    ...+.|+|.......+-+.. ...+....   ..+|+.+..+.......|.|.++
T Consensus         8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l   87 (120)
T d2agjh1           8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL   87 (120)
T ss_dssp             CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC
T ss_pred             CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee
Confidence            345578999999999987642    24689999755432222222 11221111   25789888877777889999999


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      +.+|++.|.|..
T Consensus        88 ~~eDsAvYyCAr   99 (120)
T d2agjh1          88 DPVDTATYYCAR   99 (120)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             eeccceEEeeEe
Confidence            999999999964

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.3e-08  Score=68.53  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=55.9

Q ss_pred             CcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceec-cCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISM-SGSLIIHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      |..+.+.+|+.|+|.|......   ...+.|+|.......+.+.... .........+.....+.......|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            4556689999999999985432   2359999987653333222211 11111122222223344566789999999999


Q ss_pred             CCeeEEEEEEE
Q psy16652        155 DAGIYKCEVII  165 (384)
Q Consensus       155 d~G~Y~C~~~~  165 (384)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998864

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.78  E-value=5.4e-08  Score=66.87  Aligned_cols=88  Identities=13%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ++..|..+++.+|++|+|.|... .....+.|||.........+..........   ...++.... .....+.|.|.++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~   80 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR-EKKERFSLILESA   80 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC-SSTTBCEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe-ccCcEeeeEeccC
Confidence            55667778889999999999863 344579999976553333232222111111   123444333 2455678999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|+|.|.|.+.
T Consensus        81 ~~~Dsa~YyCa~~   93 (113)
T d1j8he1          81 STNQTSMYLCASS   93 (113)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCcccEEeeEc
Confidence            9999999999876

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=2.5e-09  Score=72.76  Aligned_cols=85  Identities=15%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEecCC--------Cceeee---eeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN--------QHYSVS---HFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      .+.+|+++.|.|.........+.|++........        ......   ...+..-..+.+|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            4679999999998543345589999855322110        000000   00011112467899999999999999999


Q ss_pred             EEeCCc-ceEEEEEEEE
Q psy16652        353 AANKYG-SAQKEIELFD  368 (384)
Q Consensus       353 a~n~~g-~~~~~~~l~v  368 (384)
                      +.+..+ ..+.++.|.|
T Consensus        90 v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          90 MTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEETTEEECCCCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            998864 4556677765

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.76  E-value=9e-08  Score=64.18  Aligned_cols=86  Identities=20%  Similarity=0.318  Sum_probs=60.0

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|++++|.|.+.+.  ....+.|++.......+-+. +.......    ...+|+.+..+.......|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~   85 (115)
T d1f3dh1           6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS   85 (115)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence            3445568999999999999875  34579999975442222221 22122111    13468989887777778899999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999953

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.1e-08  Score=72.12  Aligned_cols=85  Identities=22%  Similarity=0.333  Sum_probs=57.8

Q ss_pred             cccccCCcEEEEEEEeccCCC----eEEEEECCEEecCC---------------------CceeeeeeeccCccccceEE
Q psy16652        283 QGQALQYDAILECHVEAYPPP----AIVWIKDGVQIMNN---------------------QHYSVSHFATSDEFSDTSLR  337 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~  337 (384)
                      ..+.+|+.++|.|.+...+..    .+.|++.+......                     ++..+.  ..........|+
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~   91 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT--SNDLKSGDASIN   91 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEEC--CSCGGGTBCCEE
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEE--ccCCCCCEEEEE
Confidence            457899999999998754333    58898732111000                     111111  011112346799


Q ss_pred             EeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652        338 VITIERRQFGQYACKAANKYGSAQKEIELFDR  369 (384)
Q Consensus       338 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  369 (384)
                      |.+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999999999888888875

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.73  E-value=2.7e-08  Score=68.28  Aligned_cols=88  Identities=13%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee---CCceEEeeCCCCceEEEEEeec
Q psy16652         75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH---DSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ++..|....+.+|++|+|.|.... ....+.||+......+..+...........   ..++.... .......|.|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~   79 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR-STTEDFPLRLLSA   79 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC-SSSSBCCEEESSC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEec-CCCCEEEEEECCC
Confidence            455677778999999999998653 455799999776544433322222222221   12333332 2444568999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +++|+|.|.|...
T Consensus        80 ~~~DsavYyCA~~   92 (112)
T d2bnub1          80 APSQTSVYFCASS   92 (112)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CHHHCEEEEEeec
Confidence            9999999999875

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.72  E-value=4.3e-08  Score=67.22  Aligned_cols=88  Identities=13%  Similarity=0.211  Sum_probs=57.8

Q ss_pred             eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeC---CceEEeeCCCCceEEEEEeecC
Q psy16652         76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD---SRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ...|...++.+|++|+|.|.... ....+.||+.........+...........+   .++... ........|.|.+++
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVS-RIRTEHFPLTLESAR   79 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEEC-CSSSSBCCEEBSSCC
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceee-cCCCCceEeeecccc
Confidence            45567778899999999998643 3457999997765433333322222222211   222222 224556789999999


Q ss_pred             CCCCeeEEEEEEE
Q psy16652        153 ETDAGIYKCEVII  165 (384)
Q Consensus       153 ~~d~G~Y~C~~~~  165 (384)
                      ++|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          80 PSHTSQYLCASSE   92 (112)
T ss_dssp             TTTCSEEEEEEEC
T ss_pred             ccccccEEEEEec
Confidence            9999999998763

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.2e-08  Score=63.97  Aligned_cols=91  Identities=13%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...|.. .|..|++|+|.|.... ....+.|++.+....     ..         .   ...........+.|.+
T Consensus         3 PKPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~-----~~---------~---~~~~~~~~~a~F~i~~   63 (95)
T d1olla1           3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFA-----VD---------R---PKPPERINKVKFYIPD   63 (95)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEE-----EE---------C---CSSCTTCCEEEEEESS
T ss_pred             CCCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcc-----ee---------E---EccCCCccEEEEEEee
Confidence            46788887755 4779999999998643 345677787553200     00         0   0000122335799999


Q ss_pred             cCCCCCeeEEEEEEEccC-cceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLN-NKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~  180 (384)
                      ++.+|+|.|+|...+... ...+..++|.|.
T Consensus        64 v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          64 MNSRMAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             CCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             eecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence            999999999999875432 234666777765

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.71  E-value=1.4e-07  Score=63.84  Aligned_cols=86  Identities=20%  Similarity=0.391  Sum_probs=60.4

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +...++++|++|+|.|.+.+.  ....+.|+|.......+-+. +.......    ...+|+.+..+.......|.|.++
T Consensus         7 sg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L   86 (119)
T d1qnzh_           7 SGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRL   86 (119)
T ss_dssp             ECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeeccc
Confidence            444568899999999998874  34579999975443222222 22222221    134688888877777788999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        87 ~~eDsAvYYCA~~   99 (119)
T d1qnzh_          87 TSDDSAVYYCAIH   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CccceeEEEEEEe
Confidence            9999999999653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.69  E-value=1e-07  Score=64.50  Aligned_cols=87  Identities=16%  Similarity=0.300  Sum_probs=61.9

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCceee----eCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSLII----HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|++++|.|.+.+..  ...+.|+|.......+-+ .+........    ..+|+.+..+.......|.|.+
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~   85 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence            34455688999999999998753  456999997654322222 1222222211    3568999887777888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=1.3e-07  Score=63.13  Aligned_cols=86  Identities=28%  Similarity=0.401  Sum_probs=62.3

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....++++|++++|.|.+.+..  ...+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL   85 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence            34456689999999999998753  5679999976543333222 222222211   34699999887888889999999


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      +.+|++.|.|..
T Consensus        86 ~~eDtAvYYCAr   97 (117)
T d1c5db1          86 QTEDTAIYFCTR   97 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEec
Confidence            999999999954

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.69  E-value=1.8e-07  Score=62.98  Aligned_cols=86  Identities=17%  Similarity=0.342  Sum_probs=61.8

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ...-++++|++++|.|.+.+..  ...+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.+++
T Consensus         6 sg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~   85 (119)
T d1kxvc_           6 SGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLK   85 (119)
T ss_dssp             ECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCC
Confidence            3445679999999999998753  5579999976443222222 222222221   246899998878888899999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      .+|++.|.|...
T Consensus        86 ~eDtA~YYCAr~   97 (119)
T d1kxvc_          86 PDDTAMYYCKPS   97 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCcceEeeeec
Confidence            999999999754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.68  E-value=1.4e-07  Score=63.14  Aligned_cols=87  Identities=20%  Similarity=0.400  Sum_probs=62.2

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee---eeCCceEEeeCCCCceEEEEEeec
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI---IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....++++|++++|.|.+.+.  ....+.|+|.......+-+. +...+...   ...+|+.+..+.......|.|+++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            3455668899999999999875  35679999976543322221 12222211   124788898877788889999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYyCAr~   98 (116)
T d7fabh1          86 TAADTAVYYCARN   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEeeee
Confidence            9999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.68  E-value=1.1e-07  Score=63.59  Aligned_cols=85  Identities=19%  Similarity=0.383  Sum_probs=60.8

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCc-ee---eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGS-LI---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +..... ..   ...+|+.+..+.......|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~   85 (118)
T d1nlbh1           6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence            45556789999999999998753  5579999976543222221 221111 11   23579999987777888999999


Q ss_pred             cCCCCCeeEEEE
Q psy16652        151 IQETDAGIYKCE  162 (384)
Q Consensus       151 ~~~~d~G~Y~C~  162 (384)
                      ++.+|++.|.|.
T Consensus        86 L~~eDtAvYYCA   97 (118)
T d1nlbh1          86 LKNEDTATYFCA   97 (118)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             cccCcceEEEEe
Confidence            999999999995

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.68  E-value=1.4e-07  Score=63.53  Aligned_cols=85  Identities=24%  Similarity=0.414  Sum_probs=61.1

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +...-++++|+++.|.|.+.+..  ...+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.++
T Consensus         6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l   85 (120)
T d1dn0b1           6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (120)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence            34455688999999999998853  5579999976553333221 222222211   24689999887788888999999


Q ss_pred             CCCCCeeEEEE
Q psy16652        152 QETDAGIYKCE  162 (384)
Q Consensus       152 ~~~d~G~Y~C~  162 (384)
                      +.+|++.|.|.
T Consensus        86 ~~eDtA~YYCA   96 (120)
T d1dn0b1          86 TAADTAVYYCA   96 (120)
T ss_dssp             CGGGCEEEEEE
T ss_pred             ccccccEEEEE
Confidence            99999999994

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.68  E-value=1.9e-07  Score=62.42  Aligned_cols=87  Identities=18%  Similarity=0.358  Sum_probs=62.7

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|++|.|.|.+.+.  ....+.|+|.......+-+. +......    ....+|+.+..+.......|.|++
T Consensus         6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~   85 (117)
T d1iqdb1           6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence            4455678999999999999875  35579999976543222111 2212211    224679999988778888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCA~~   99 (117)
T d1iqdb1          86 LRSDDTAVYYCAVP   99 (117)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcCcceEEEEeEc
Confidence            99999999999753

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.67  E-value=1.2e-07  Score=63.50  Aligned_cols=87  Identities=21%  Similarity=0.310  Sum_probs=61.7

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccC-cee---eeCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSG-SLI---IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .++...++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+.... ...   ...+|+.+..+.......|.|+
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            345566789999999999998754  457999997755322222 111111 111   1247898988777788899999


Q ss_pred             ecCCCCCeeEEEEE
Q psy16652        150 EIQETDAGIYKCEV  163 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~  163 (384)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999953

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.66  E-value=4.7e-07  Score=61.06  Aligned_cols=87  Identities=21%  Similarity=0.376  Sum_probs=60.9

Q ss_pred             eCcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccc-eeccCcee---eeCCceEEeeCCCCceEEEEEe
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLP-ISMSGSLI---IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +....++++|++++|.|.+.+..    ...+.|+|.......+-+. +...+...   ...+|+.+..+.......|.|.
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~   85 (120)
T d1ai1h1           6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLI   85 (120)
T ss_dssp             EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEES
T ss_pred             eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeeccee
Confidence            34456688999999999998743    3358899976543222221 22222211   1347999998877888899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|++.|.|.-.
T Consensus        86 sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          86 SVTNEDTAMYYCSRE  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeccceeEEEEEec
Confidence            999999999999643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.66  E-value=1.3e-07  Score=62.83  Aligned_cols=85  Identities=16%  Similarity=0.344  Sum_probs=61.0

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCc-ee---eeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGS-LI---IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ....++++|+++.|.|.+.+..  ...+.|+|.......+-+. +..... ..   ...+|+.+..+.......|.|+++
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            4455688999999999998753  5579999976543322221 221221 11   124699999887788889999999


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999963

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2e-07  Score=64.47  Aligned_cols=84  Identities=10%  Similarity=0.173  Sum_probs=53.1

Q ss_pred             eeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc--eeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         82 QIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS--LIIHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      ..+.+|+.|+|.|...+..  ...+.|++.........+.+... ..  ......++.+..+.......|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            4577899999999986542  22334444433322222222221 11  1223456666665566788999999999999


Q ss_pred             eeEEEEEEE
Q psy16652        157 GIYKCEVII  165 (384)
Q Consensus       157 G~Y~C~~~~  165 (384)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998763

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.65  E-value=1.4e-07  Score=63.25  Aligned_cols=86  Identities=17%  Similarity=0.284  Sum_probs=61.8

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|++++|.|.+.+..  ...+.|+|.......+-+ .+....+.    ....+|+.+..+.......|.|.+
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s   84 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence            45566789999999999998753  557999997654322211 12212211    123578999887777888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        85 L~~eDtAvYYCAr   97 (117)
T d1um5h1          85 LTSEDSAVYYCAR   97 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999964

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.65  E-value=1.2e-07  Score=63.24  Aligned_cols=86  Identities=23%  Similarity=0.354  Sum_probs=61.3

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +....++++|+++.|.|.+.+.  ....+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|+++
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l   85 (116)
T d1a2yb_           6 ESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSL   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeee
Confidence            3445567899999999999875  35679999976543323221 121222111   24688888877778889999999


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      +.+|++.|.|.-
T Consensus        86 ~~eDTAvYYCAr   97 (116)
T d1a2yb_          86 HTDDTARYYCAR   97 (116)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             eeccceEEEEEE
Confidence            999999999974

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.64  E-value=5e-07  Score=60.03  Aligned_cols=86  Identities=19%  Similarity=0.317  Sum_probs=61.7

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-cee-ccCcee---eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PIS-MSGSLI---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+. ..+...   ...+|+.+..+.......|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            45566789999999999998853  567999997654322211 122 122111   13468999888788888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAr   98 (116)
T d1mjuh1          86 LTSDDSAVYYCAN   98 (116)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEcc
Confidence            9999999999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.64  E-value=9.3e-08  Score=62.95  Aligned_cols=81  Identities=19%  Similarity=0.366  Sum_probs=56.9

Q ss_pred             eeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee---eeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652         83 IKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI---IHDSRFQLTTDPETSTYILSIKEIQETDA  156 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  156 (384)
                      +|++|++++|.|.+.+.  ....+.|+|.......+-+. +...+...   ...+|+.+..+.......|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            46889999999998774  35679999976543323222 22222221   12468999988777888999999999999


Q ss_pred             eeEEEEE
Q psy16652        157 GIYKCEV  163 (384)
Q Consensus       157 G~Y~C~~  163 (384)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.64  E-value=1e-06  Score=60.00  Aligned_cols=105  Identities=15%  Similarity=0.293  Sum_probs=69.5

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCccc-ceeccCce-e---eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPL-PISMSGSL-I---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+.  ....+.|+|.......+-+ .+....+. .   ...+|+.+..+.......|.|.+
T Consensus         6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~   85 (135)
T d1ieha_           6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS   85 (135)
T ss_dssp             EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred             eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence            3445568899999999999875  3567999997644322222 12212211 1   23579999998888888999999


Q ss_pred             cCCCCCeeEEEEEEEccC-cceeeeEEEEEecC
Q psy16652        151 IQETDAGIYKCEVIISLN-NKVSAEVELIVRRP  182 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~  182 (384)
                      ++.+|++.|.|....... ...-.-..|+|...
T Consensus        86 L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSa  118 (135)
T d1ieha_          86 LKSEDTAVYYCAKYSGGALDAWGQGTQVTVSSQ  118 (135)
T ss_dssp             CCSSSCEEEEEEEBSSSSBCCCSCCEEEEECSS
T ss_pred             eCcccceeeEEEEecCCccceeCCCEEEEEECC
Confidence            999999999996432111 12234456676644

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.63  E-value=2e-07  Score=62.72  Aligned_cols=87  Identities=17%  Similarity=0.337  Sum_probs=62.7

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+......    ....+|+.+..+.......|.|.+
T Consensus         7 ~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            35667789999999999998754  457999997654322222 12211111    123579999988778888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        87 L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          87 LRPEDTAVYYCARD  100 (122)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999754

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=7.4e-08  Score=67.02  Aligned_cols=83  Identities=18%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEec--------CCCceeeeee----------eccCccc
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM--------NNQHYSVSHF----------ATSDEFS  332 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~--------~~~~~~~~~~----------~~~~~~~  332 (384)
                      +|.+...|..+.+.+|+.++|.|.+.+.....+.|++.  |..+.        ..........          .......
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            36677778888899999999999998877778999982  22110        0000000000          0000112


Q ss_pred             cceEEEeecCCCCCeEEEEEEEe
Q psy16652        333 DTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       333 ~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                      ..+|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            34699999999999999998763

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.62  E-value=2.8e-07  Score=61.91  Aligned_cols=86  Identities=17%  Similarity=0.295  Sum_probs=61.8

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSL----IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+.  ....+.|+|.......+-+. +......    ....+|+.+..+.......|.|.+
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~   85 (121)
T d2p49b1           6 ESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDS   85 (121)
T ss_dssp             EEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeee
Confidence            3455668999999999999875  45679999976543323221 2212111    123569999988778888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (121)
T d2p49b1          86 LKPEDTATYYCAA   98 (121)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccccceeEEeeec
Confidence            9999999999974

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.62  E-value=2.3e-07  Score=62.13  Aligned_cols=87  Identities=18%  Similarity=0.373  Sum_probs=61.9

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +...-++++|+++.|.|.+.+..  ...+.|+|.......+-+. +.......    ...+|+.+..+.......|.|.+
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   85 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence            34456689999999999998864  4579999966443222221 12122111    13578999988788888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d2fbjh1          86 VRSEDTALYYCARL   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeEe
Confidence            99999999999754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.62  E-value=1.4e-07  Score=62.96  Aligned_cols=86  Identities=19%  Similarity=0.337  Sum_probs=61.8

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCce-e---eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSL-I---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +...... .   ...+|+.+..+...+...|.|.+
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~   85 (117)
T d1jpth1           6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNS   85 (117)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccc
Confidence            34556689999999999998854  5679999976543222221 1112211 1   23578999988778888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jpth1          86 LRAEDTAVYYCAR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEee
Confidence            9999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.61  E-value=1.3e-07  Score=64.07  Aligned_cols=87  Identities=17%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|++|+|.|.+.+..  ...+.|+|.......+-+. +.......    ...+|+.+..+.......|.|.+
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            45566789999999999988743  4579999976443222222 22222221    13468888877667778899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1j05b_          86 LTSEDTAVYYCAPF   99 (121)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcCcceEEEeEee
Confidence            99999999999754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=4.2e-07  Score=55.41  Aligned_cols=89  Identities=19%  Similarity=0.328  Sum_probs=61.5

Q ss_pred             eeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         83 IKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        83 ~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      .+..|+.+.|.|.++- ...+.++|.|.+....   ..+..+.     +-..+.....+..-+.|.+..+.++|.|.|+|
T Consensus        14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~c---v~Le~~p-----q~~TsW~e~~nis~FvLhF~pvl~sDnGsYrC   85 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIW---VPLEVGP-----QLYTSWEENRSVPVFVLHFKPIHLSDNGSYSC   85 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSE---EECCCBT-----TEEEEEECSSSSCEEEEEETTCCGGGCEEEEE
T ss_pred             eEecCCceEecCcchhhcCCCCcEEEEeCCcEE---EEeecCC-----ccccchhhcCCeeEEEEEeeeeeecCCCceEE
Confidence            4789999999999976 4577999999776521   1111111     11122333445667889999999999999999


Q ss_pred             EEEEccCcceeeeEEEEE
Q psy16652        162 EVIISLNNKVSAEVELIV  179 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~l~v  179 (384)
                      .+....+-..+.++.+.|
T Consensus        86 Sanf~s~vieSHSvti~V  103 (104)
T d1xaua_          86 STNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             ecCCChhheecceEEEEe
Confidence            997666555666666655

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.61  E-value=1.9e-07  Score=62.59  Aligned_cols=87  Identities=17%  Similarity=0.306  Sum_probs=61.3

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCceee----eCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLII----HDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .++...++++|++++|.|.+.+..  ...+.|+|.......+-+. +........    ..+|+.+..+.......|.|.
T Consensus         5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            345666789999999999998753  5579999975442222221 222222211    245888888777788899999


Q ss_pred             ecCCCCCeeEEEEE
Q psy16652        150 EIQETDAGIYKCEV  163 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~  163 (384)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.60  E-value=2.7e-07  Score=61.99  Aligned_cols=86  Identities=21%  Similarity=0.398  Sum_probs=61.8

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCceee----eCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSLII----HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +...-++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+........    ..+|+.+..+.......|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s   85 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence            45556689999999999998854  557999997644322222 1221222211    3469999988788888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1rz7h1          86 LRSEDTAVYYCAA   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcccceEEEEee
Confidence            9999999999964

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.60  E-value=2.1e-07  Score=62.50  Aligned_cols=86  Identities=19%  Similarity=0.293  Sum_probs=60.9

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCce-e---eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSL-I---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+...... .   ...+|+.+..+.......|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s   85 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence            45566789999999999998853  557999997654322211 12211211 1   13468989887777788999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.60  E-value=1.6e-07  Score=63.37  Aligned_cols=86  Identities=20%  Similarity=0.411  Sum_probs=60.8

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ....++++|+++.|.|.+.+..  ...+.|+|.......+-+. +.......    ...+|+.+..+.......|.|+++
T Consensus         7 sG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L   86 (123)
T d1mqkh_           7 SGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL   86 (123)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee
Confidence            4455688999999999998753  5579999976543222221 22122211    135689998877777788999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (123)
T d1mqkh_          87 KSEDTAMYYCVRH   99 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCcccceeEEec
Confidence            9999999999754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.59  E-value=3.7e-07  Score=61.93  Aligned_cols=87  Identities=18%  Similarity=0.367  Sum_probs=62.7

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|+++.|.|.+.+.  ....+.|+|.......+-+- +.......    ...+|+.+..+.......|.|++
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~s   85 (127)
T d2fx7h1           6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecc
Confidence            3455667899999999999875  35679999976543322221 22122111    13579999988888888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|.-.
T Consensus        86 L~~eDTavYYCAR~   99 (127)
T d2fx7h1          86 LRPEDTAVYYCARE   99 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeec
Confidence            99999999999754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.59  E-value=2.5e-07  Score=63.04  Aligned_cols=88  Identities=18%  Similarity=0.286  Sum_probs=63.2

Q ss_pred             eeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .++...++++|+++.|.|.+.+.  ....+.|+|.......+-+. +....+..    ...+|+.+..+.......|.|.
T Consensus         4 ~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~   83 (130)
T d1rhhb1           4 EQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT   83 (130)
T ss_dssp             EECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence            34556678999999999999875  35579999976543322221 22222111    1346999998888888899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|++.|.|...
T Consensus        84 ~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          84 NLRSDDTAVYYCARD   98 (130)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCcEEEEEEee
Confidence            999999999999754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.1e-07  Score=61.27  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=58.4

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...|. ..|..|++|+|.|.........+.|+|++......                .  ..  ......+.|.
T Consensus         3 ~PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----------------~--~~--~~~~a~F~l~   61 (96)
T d1ucta2           3 YGKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----------------H--QS--GEHPANFSLG   61 (96)
T ss_dssp             SCCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----------------E--EE--CSSSEEEECC
T ss_pred             CCCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----------------E--cC--CCcccEEEEe
Confidence            35778887664 47899999999998543344468899977531100                0  00  1123468899


Q ss_pred             ecCCCCCeeEEEEEEEccC----cceeeeEEEEE
Q psy16652        150 EIQETDAGIYKCEVIISLN----NKVSAEVELIV  179 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v  179 (384)
                      +++.+|+|.|+|.......    ...+..++|.|
T Consensus        62 ~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          62 PVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             SCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             ccccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            9999999999998864332    12355666655

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.59  E-value=3e-07  Score=61.42  Aligned_cols=86  Identities=17%  Similarity=0.322  Sum_probs=61.6

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+.  ....+.|+|.......+-+- +.......    ...+|+.+..+......-|.|.+
T Consensus         6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~   85 (117)
T d1jnhb1           6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS   85 (117)
T ss_dssp             ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence            3455667899999999999885  35679999976543222221 12122211    12468999988778888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jnhb1          86 LTSEDSAVYSCSR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999964

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.58  E-value=3.1e-07  Score=63.32  Aligned_cols=86  Identities=23%  Similarity=0.327  Sum_probs=60.4

Q ss_pred             CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .....+++|++++|.|.+.+..    ...+.|+|.......+-+.........    ...+|+.+..+.......|.|.+
T Consensus         7 sg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~   86 (132)
T d1tjgh1           7 SGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTR   86 (132)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEccccc
Confidence            3455688999999999988643    235899997654333333222222111    13578988887677788899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        87 l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          87 VSPVDTATYFCAHR  100 (132)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcccceEEEEEEe
Confidence            99999999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.58  E-value=2.2e-07  Score=63.07  Aligned_cols=85  Identities=16%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ...-.+++|+++.|.|.+.+.  ....+.|+|.......+-+. +.......    ...+|+.+..+.......|.|.++
T Consensus         6 sG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL   85 (124)
T d1zvya1           6 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV   85 (124)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc
Confidence            445567899999999999875  35679999977553333221 22222221    135799999887788889999999


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      +.+|++.|.|..
T Consensus        86 ~~eDtAvYYCAr   97 (124)
T d1zvya1          86 KSEDTAIYTCGA   97 (124)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cCCcceEEEEee
Confidence            999999999975

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.58  E-value=2.8e-07  Score=62.84  Aligned_cols=86  Identities=17%  Similarity=0.376  Sum_probs=62.1

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|+++.|.|.+.+..  ...+.|+|.......+-+. +.......    ...+|+.+..+.......|.|++
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s   85 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS   85 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence            45566789999999999998753  5579999976543322221 22222221    13578999988777888899999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtA~YYCAr   98 (130)
T d1rzga1          86 LRSEDTAVFYCAS   98 (130)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCccEEEEEEE
Confidence            9999999999974

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.58  E-value=2.6e-07  Score=60.84  Aligned_cols=86  Identities=20%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eecc--C-ce---eeeCCceEEeeCCCCceEEEEE
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMS--G-SL---IIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~--~-~~---~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +...  . ..   ....+|+.+..+.......|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            34556789999999999998753  4579999976553222111 1111  1 11   1134699999887788889999


Q ss_pred             eecCCCCCeeEEEEE
Q psy16652        149 KEIQETDAGIYKCEV  163 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~  163 (384)
                      .+++.+|++.|.|.-
T Consensus        86 ~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVR  100 (109)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cCCCHhHCEEEEEEE
Confidence            999999999999974

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.57  E-value=2.8e-07  Score=62.74  Aligned_cols=86  Identities=22%  Similarity=0.379  Sum_probs=61.9

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +...+...    ...+|+.+..+......-|.|+++
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L   86 (127)
T d2fb4h1           7 SGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSL   86 (127)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeee
Confidence            4455678999999999998753  5579999976543322221 12122111    235799999888888899999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        87 ~~eDTA~YYCAr~   99 (127)
T d2fb4h1          87 RPEDTGVYFCARD   99 (127)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eecceeEEEEEEe
Confidence            9999999999753

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.57  E-value=3.5e-07  Score=61.85  Aligned_cols=86  Identities=19%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|+++.|.|.+.+..  ...+.|+|.......+-+- +.......    ...+|+.+..+.......|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~   85 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS   85 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence            45556789999999999998854  4579999976553333221 22222211    13579999988788888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDTA~YYCAR   98 (124)
T d2b1hh1          86 LKPSDTALYYCAR   98 (124)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEEEee
Confidence            9999999999953

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.57  E-value=1.7e-07  Score=63.54  Aligned_cols=86  Identities=22%  Similarity=0.339  Sum_probs=58.6

Q ss_pred             CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEee
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ....++++|++++|.|.+.+..    ...+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.+
T Consensus         7 sg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s   86 (123)
T d1r0ah1           7 SGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT   86 (123)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence            3455678999999999987642    2357899975443223221 222222111   2368888887666778899999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999743

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.5e-07  Score=58.09  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...|. ..|..|++|+|.|.... ....+.|+|++....                  .....  ......+.|.+
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~------------------~~~~~--~~~~a~F~i~~   60 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSH------------------VQRGY--GKVQAEFPLGP   60 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSCE------------------EEEEE--CSSEEEEEEEE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCCC-CCCEEEEEECCCccc------------------eeecC--CCceeEEEecc
Confidence            4678877664 55788999999998643 455788998765310                  00011  22345799999


Q ss_pred             cCCCCCeeEEEEEEEccC--cceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLN--NKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~  180 (384)
                      ++..|+|.|+|.......  ...+..+.|.|.
T Consensus        61 v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          61 VTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             CCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             cChhcCceEEEEeECCCCCcCCCCCCEEEEee
Confidence            999999999997543322  123555666553

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=2.3e-07  Score=64.50  Aligned_cols=88  Identities=13%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             cCCCcccccCCcEEEEEEEecc----CCCeEEEEECCE------Ee---------c-CC----CceeeeeeeccCccccc
Q psy16652        279 NRPRQGQALQYDAILECHVEAY----PPPAIVWIKDGV------QI---------M-NN----QHYSVSHFATSDEFSDT  334 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~----p~~~v~W~~~~~------~~---------~-~~----~~~~~~~~~~~~~~~~~  334 (384)
                      .+....+..|++++|.|.....    ....+.|++...      .+         . ..    +|..+..   .....+.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~   81 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG---DPSWKDG   81 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECC---BGGGTBC
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEE---ECCCCEE
Confidence            3455667899999999997532    223799987211      00         0 00    1111110   1112346


Q ss_pred             eEEEeecCCCCCeEEEEEEEeCCc--ceEEEEEEEEe
Q psy16652        335 SLRVITIERRQFGQYACKAANKYG--SAQKEIELFDR  369 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~  369 (384)
                      +|.|.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            799999999999999999998543  44556777765

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.57  E-value=3.4e-07  Score=61.93  Aligned_cols=86  Identities=20%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ...-++++|+++.|.|.+.+..  ...+.|+|.......+-+- +...+..    ....+|+.+..+.......|.|.++
T Consensus         7 SG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL   86 (125)
T d1op3h1           7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (125)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeecc
Confidence            3445689999999999998753  5579999976543222221 1111111    1135689999887888889999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (125)
T d1op3h1          87 RVEDTAIYYCARK   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCccceeEeEeec
Confidence            9999999999753

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.56  E-value=3.2e-07  Score=62.13  Aligned_cols=86  Identities=22%  Similarity=0.393  Sum_probs=61.8

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-ee-ccCce---eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-IS-MSGSL---IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ...-++++|+++.|.|.+.+..  ...+.|+|.......+-+. +. ..+..   ....+|+.+..+.......|.|.++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           7 SGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL   86 (126)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence            4455689999999999998754  4579999976543322221 21 12111   1235799999887888889999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        87 ~~eDtavYYCAr~   99 (126)
T d1dfbh1          87 RAEDMALYYCVKG   99 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCcceEEEEEec
Confidence            9999999999643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=62.27  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             EecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        271 EFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      +.+|.+.+.+. ..+..|+.++|.|.+.|+ |.. .+.|.+||.++.............+.....+.|   .+..++.+.
T Consensus         3 ~~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l---~v~~~~~~~   78 (100)
T d1k5nb_           3 QRTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYT---EFTPTEKDE   78 (100)
T ss_dssp             CBCCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEE---EECCCSSCC
T ss_pred             cCCCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEe---EECCCCCCE
Confidence            44666655322 234568889999999995 433 799999999986443333333222222222233   334556779


Q ss_pred             EEEEEEeCCcce
Q psy16652        349 YACKAANKYGSA  360 (384)
Q Consensus       349 Y~C~a~n~~g~~  360 (384)
                      |+|.+....-..
T Consensus        79 ytC~V~H~sl~~   90 (100)
T d1k5nb_          79 YACRVNHVTLSQ   90 (100)
T ss_dssp             EEEEEECTTCSS
T ss_pred             EEEEEEeCCCCC
Confidence            999999875443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-07  Score=63.58  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=57.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+. ..+..|+.|+|.|.... +...+.|+++|...........    .........+.|.+++.+|+|.|.|.
T Consensus         7 kPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~----~~~~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           7 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRL----KFWNETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEEC----C----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCC-CceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccc----cCCCCceEEEEecCCCHHHCceEEEE
Confidence            466666554 45788999999998754 5568999987642211110000    00111345689999999999999999


Q ss_pred             EEeCCcceE--EEEEEEE
Q psy16652        353 AANKYGSAQ--KEIELFD  368 (384)
Q Consensus       353 a~n~~g~~~--~~~~l~v  368 (384)
                      ..+..+..+  ..++|.|
T Consensus        81 y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          81 YRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             EEETTTEEEECCCEEEEE
T ss_pred             EECCCcccCCCCCEEEEe
Confidence            999876433  2355554

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.56  E-value=4.3e-07  Score=61.81  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=62.9

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCce----eeeCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSL----IIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .++...++++|++++|.|.+.+..  ...+.|+|.......+-+- +......    ....+|+.+..+.......|.|.
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            345666789999999999998754  4579999976543322221 2112221    12346898988877888899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.55  E-value=4.7e-07  Score=60.62  Aligned_cols=88  Identities=18%  Similarity=0.315  Sum_probs=62.3

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccC-ceee---eCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSG-SLII---HDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +.... ....   ..+|+.+..+.......|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~   84 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence            345566789999999999998853  5679999976543222221 22222 1111   346888888777788899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|++.|.|.-.
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          85 SLTTEDSAIYYCARY   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeee
Confidence            999999999999653

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.54  E-value=4.1e-07  Score=61.00  Aligned_cols=87  Identities=22%  Similarity=0.369  Sum_probs=61.6

Q ss_pred             eCcceeeeccCcEEEEEEeecCCC---ccEEEEEeCCCCCCcccc-eeccCcee---eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYADD---YPVIWMKMDTAKKMEPLP-ISMSGSLI---IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+...   ..+.|+|.......+-+. +...+...   ...+|+.+..+...+...|.|.+
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s   85 (119)
T d1ncwh1           6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS   85 (119)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence            345566889999999999988542   458999966542222111 22222221   13469999988888889999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1ncwh1          86 VTTEDTATYYCAGL   99 (119)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEeEe
Confidence            99999999999654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.54  E-value=1.5e-06  Score=58.03  Aligned_cols=86  Identities=20%  Similarity=0.384  Sum_probs=61.4

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ....++++|+++.|.|.+.+.  ....+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.+++
T Consensus         7 Sg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~   86 (118)
T d1lo4h1           7 TGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLR   86 (118)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccccc
Confidence            445567899999999999885  35689999976543322221 222222111   245888988877888899999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      .+|++.|.|.-.
T Consensus        87 ~eDtA~YyCAr~   98 (118)
T d1lo4h1          87 SEDTAIYYCARG   98 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeccc
Confidence            999999999643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.54  E-value=5.8e-07  Score=60.50  Aligned_cols=86  Identities=19%  Similarity=0.312  Sum_probs=62.5

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +.......    ...+|+.+..+.......|.|++
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            45566789999999999998853  5579999976543323221 22222221    23579999988788888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAR   98 (124)
T d1yedb1          86 LKSEDSAVYFCTR   98 (124)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEecc
Confidence            9999999999964

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.54  E-value=4.4e-07  Score=61.24  Aligned_cols=86  Identities=21%  Similarity=0.385  Sum_probs=61.2

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCc-e---eeeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGS-L---IIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+..... .   ....+|+.+..+.......|.|++
T Consensus         6 esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~s   85 (121)
T d1ol0a_           6 ESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNS   85 (121)
T ss_dssp             EEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeee
Confidence            34455678999999999998753  457999997644322222 1121211 1   123569999988778888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (121)
T d1ol0a_          86 LRAEDTAVYYCAR   98 (121)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEEEEE
Confidence            9999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.54  E-value=5e-07  Score=61.17  Aligned_cols=86  Identities=15%  Similarity=0.320  Sum_probs=61.9

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCccc-ceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPL-PISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      ++...++++|+++.|.|.+.+.  ....+.|+|.......+-+ .+.......    ...+|+.+..+.......|.|.+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~   84 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS   84 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence            4556678999999999999885  3567999996654222211 122222211    13579999888788889999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|.-
T Consensus        85 L~~eDTAvYYCAr   97 (126)
T d1lmka1          85 LTSEDSAVYYCAR   97 (126)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999964

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.54  E-value=3.1e-07  Score=62.08  Aligned_cols=86  Identities=22%  Similarity=0.390  Sum_probs=61.1

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSL----IIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +......    ....+|+.+..+......-|.|+++
T Consensus         7 sG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL   86 (122)
T d1bz7b1           7 SGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL   86 (122)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee
Confidence            4455678999999999998853  5579999976543323221 1112211    1235799998877777888999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (122)
T d1bz7b1          87 RSEDTAIYYCTRG   99 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccCceEEEeecC
Confidence            9999999999653

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.3e-07  Score=62.96  Aligned_cols=81  Identities=11%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             ccccCCcEEEEEEEeccCCCeEEEEECCEEe--cCCCceee----------eeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        284 GQALQYDAILECHVEAYPPPAIVWIKDGVQI--MNNQHYSV----------SHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      ...+|++++|.|.........+.|++.....  ........          ..........+.+|+|.+++.+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            3568999999999877666789999854221  11110000          00001112234579999999999999999


Q ss_pred             EEEeCCcceEEEEEEEE
Q psy16652        352 KAANKYGSAQKEIELFD  368 (384)
Q Consensus       352 ~a~n~~g~~~~~~~l~v  368 (384)
                      .+.+.    ...+.|.|
T Consensus        85 ~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          85 EVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EETTE----EEEEEEEE
T ss_pred             EEecC----CeEEEEEC
Confidence            99653    34455544

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.53  E-value=5.2e-07  Score=61.29  Aligned_cols=87  Identities=20%  Similarity=0.381  Sum_probs=63.2

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +.......    ...+|+.+..+.......|.|.+
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s   85 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN   85 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence            45556689999999999998864  4568999976553333221 22222221    13579999988788888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTA~YYCAr~   99 (128)
T d2nxyd1          86 LRSDDTAVYFCAGV   99 (128)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccCceEEEEeEE
Confidence            99999999999864

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.3e-07  Score=63.21  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=47.4

Q ss_pred             ccccCCcEEEEEEEec-cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        284 GQALQYDAILECHVEA-YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      .+.+|+.++|.|.+.+ +|.+  .+.|++++..+......... ...+.....+.|++.....++...|+|.|+|..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~-~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA-DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC-SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccccc-ccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            3678999999999965 6654  69999999887532211110 01111112345666555555555899999998755

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-07  Score=61.94  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+.. .+..|+.|+|.|.... ....+.|+++|.........      .........+.|.+++.+|+|.|.|.
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEc------cCCCccEEEEEEeeeecCCCceEEEE
Confidence            4666665543 4779999999998753 45689999998644211110      00111345799999999999999999


Q ss_pred             EEeCCcce--EEEEEEEEe
Q psy16652        353 AANKYGSA--QKEIELFDR  369 (384)
Q Consensus       353 a~n~~g~~--~~~~~l~v~  369 (384)
                      ..+..+..  +..++|.|.
T Consensus        76 y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          76 YRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EEETTEECCCCCCEEEEEE
T ss_pred             eCCCCCccCCCCCEEEEEe
Confidence            98876533  334666664

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=4.4e-07  Score=62.14  Aligned_cols=77  Identities=13%  Similarity=0.270  Sum_probs=49.9

Q ss_pred             cCCCcccccCCcEEEEEEEecc-CCCeEEEEEC--CEEe-------------cCCCceeeeeeeccCccccceEEEeecC
Q psy16652        279 NRPRQGQALQYDAILECHVEAY-PPPAIVWIKD--GVQI-------------MNNQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .|..+.+.+|+.++|.|...+. ....+.||+.  |..+             ....++.+....   ......|.|.+++
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~~~~   81 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNILDTR   81 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEESSCC
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeC---CCCEEEEEECccC
Confidence            4555668899999999998653 3447899972  2111             112233322111   1124569999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy16652        343 RRQFGQYACKAANKYG  358 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g  358 (384)
                      .+|+|.|.|.+....+
T Consensus        82 ~~Dsg~YyCa~~~~~~   97 (114)
T d3bp5a1          82 RNDSGIYLCGAISLHP   97 (114)
T ss_dssp             GGGCEEEEEEEECSSS
T ss_pred             cCCCeEEEEEEEeCCC
Confidence            9999999998876543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.51  E-value=6.5e-07  Score=60.62  Aligned_cols=86  Identities=16%  Similarity=0.428  Sum_probs=61.4

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-ee-ccCceee---eCCceEEeeCCCCceEEEEEe
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-IS-MSGSLII---HDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .++...++++|+++.|.|.+.+..  ...+.|+|.......+-+- +. ..+....   ..+|+.+..+.......|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            345667789999999999998854  5579999976543222111 11 1211111   356899998777788889999


Q ss_pred             ecCCCCCeeEEEE
Q psy16652        150 EIQETDAGIYKCE  162 (384)
Q Consensus       150 ~~~~~d~G~Y~C~  162 (384)
                      +++.+|++.|.|.
T Consensus        85 ~L~~eDtAvYYCA   97 (127)
T d1n0xh1          85 SLRSADTAVYYCA   97 (127)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccCCCCceEEEEE
Confidence            9999999999995

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.5e-08  Score=66.45  Aligned_cols=81  Identities=22%  Similarity=0.396  Sum_probs=50.6

Q ss_pred             eeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCce-e--eeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652         82 QIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSL-I--IHDSRFQLTTDPETSTYILSIKEIQET  154 (384)
Q Consensus        82 ~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~  154 (384)
                      +.+..|++|+|.|.+....    ...+.|.+.+..     +.....+.. .  ...+|..+..   .++.+|.|.+++.+
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~-----v~~~~~~~~~~~~~~~~r~~~~~---~g~~sL~I~~v~~~   75 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKM-----VLTMMSGDMNIWPEYKNRTIFDI---TNNLSIVILALRPS   75 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEE-----EEEEETTEEEECHHHHTTEEEES---TTTTEEEECSCCGG
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceE-----EEEEEeccceeecceeeeeeecc---CCcEEEEECcCChH
Confidence            4578999999999875432    235677764422     111111111 1  1234544433   24568999999999


Q ss_pred             CCeeEEEEEEEccCcc
Q psy16652        155 DAGIYKCEVIISLNNK  170 (384)
Q Consensus       155 d~G~Y~C~~~~~~~~~  170 (384)
                      |+|.|.|.+.+...+.
T Consensus        76 D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          76 DEGTYECVVLKYEKDA   91 (105)
T ss_dssp             GCEEEEEEEEECCTTS
T ss_pred             HCeEEEEEEEeCCCCC
Confidence            9999999998655443

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.7e-07  Score=61.75  Aligned_cols=91  Identities=18%  Similarity=0.362  Sum_probs=57.5

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+.+.++......++.++|.|.+.|+ |.. .|.|.+||..+..+... ......++.+...+.|+|..-.......|
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEE
Confidence            5665554443333345678999999885 433 89999999988644221 11112223333446677777776777899


Q ss_pred             EEEEEeCCcceEEE
Q psy16652        350 ACKAANKYGSAQKE  363 (384)
Q Consensus       350 ~C~a~n~~g~~~~~  363 (384)
                      +|.|.........+
T Consensus        85 tC~V~H~~~~~~kt   98 (102)
T d1q0xl2          85 SCQVTHEGHSSNKT   98 (102)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             EEEEEECCccEeeE
Confidence            99999976544443

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.51  E-value=6.1e-07  Score=61.40  Aligned_cols=85  Identities=22%  Similarity=0.348  Sum_probs=59.1

Q ss_pred             cceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         80 QEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        80 ~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ...++++|++++|.|.+.+..    ...+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.++
T Consensus         8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l   87 (126)
T d1etzb1           8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV   87 (126)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence            345678999999999988642    2356799875443333222 222222211   24689988887777889999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999743

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.51  E-value=2.5e-07  Score=61.70  Aligned_cols=86  Identities=19%  Similarity=0.335  Sum_probs=61.7

Q ss_pred             eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCceee----eCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLII----HDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+.  ....+.|+|.......+-+- +........    ..+|+.+..+.......|.|++
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~s   85 (117)
T d1b2wh1           6 QSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNS   85 (117)
T ss_dssp             ECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecc
Confidence            3455668999999999999874  46689999976543323221 211211111    2479999988888888999999


Q ss_pred             cCCCCCeeEEEEE
Q psy16652        151 IQETDAGIYKCEV  163 (384)
Q Consensus       151 ~~~~d~G~Y~C~~  163 (384)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1b2wh1          86 LRPEDTAVYYCAR   98 (117)
T ss_dssp             CCGGGCEEEECCE
T ss_pred             ccCCcceEEEEcc
Confidence            9999999999953

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.51  E-value=1.4e-06  Score=58.38  Aligned_cols=86  Identities=21%  Similarity=0.364  Sum_probs=60.5

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-e-e-ccCcee----eeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-I-S-MSGSLI----IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~-~-~~~~~~----~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ....++++|++++|.|.+.+.  ....+.|+|.......+-+. + . ..+...    ...+|+.+..+...+...|.|.
T Consensus         7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~   86 (120)
T d1dlfh_           7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN   86 (120)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence            445567899999999999875  45679999966543222111 1 1 111111    1246899988777888899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGI  101 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccCCCceEEEeeEe
Confidence            999999999999653

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.50  E-value=1.9e-07  Score=63.93  Aligned_cols=88  Identities=13%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEEEEEe
Q psy16652         74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .+...|...++.+|++|+|.|.........+.||+......+..+..........    ...++.....   ....|.|.
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~---~~~~l~l~   79 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDTELRLQ   79 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE---ETTEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc---cccEEEEe
Confidence            4566777888999999999999876556679999987654333333222221111    1234544331   22468888


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      .++.+|++.|.|...
T Consensus        80 ~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          80 VANMSQGRTLYCTCS   94 (112)
T ss_dssp             EESCCSCEEEEEEEE
T ss_pred             cCCccCCccEEEEEe
Confidence            899999999999864

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.50  E-value=6.8e-07  Score=59.86  Aligned_cols=87  Identities=21%  Similarity=0.356  Sum_probs=62.3

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +...-++++|+++.|.|.+.+..  ...+.|+|.......+-+- +.......    ...+|+.+..+...+...|.|++
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~   85 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence            45566789999999999998754  4579999976542222111 12122211    23579999988888889999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999643

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.50  E-value=1.6e-07  Score=64.57  Aligned_cols=76  Identities=14%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECC--E---E-e--c------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDG--V---Q-I--M------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~---~-~--~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|+.++|.|.........+.||+..  .   . +  .      ...++....   .......+|+|.+++.+|
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL---DADTKQSSLHITASQLSD   83 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB---CSSSSEEEEEECSCCGGG
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee---cCcccccccEEcccChhh
Confidence            34456789999999999877666789999732  1   0 0  0      011222111   112245679999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16652        346 FGQYACKAANKYG  358 (384)
Q Consensus       346 ~G~Y~C~a~n~~g  358 (384)
                      +|.|.|.+....+
T Consensus        84 sg~Y~Ca~~~~~~   96 (114)
T d2cdea1          84 SASYICVVSDRGS   96 (114)
T ss_dssp             CSEEEEEEECSCT
T ss_pred             CcccceeeecCCC
Confidence            9999999987543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=4.6e-07  Score=60.19  Aligned_cols=84  Identities=19%  Similarity=0.275  Sum_probs=51.0

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .+|.+.+.+.. ....|+.++|.|.+.|+ |.. .++|.+||.++.............+.....+.|.   +..++.+.|
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~---v~~~~~~~y   78 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTE---FTPTETDTY   78 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEE---ECCCSSCCE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeE---ecCcCCCEE
Confidence            45665553222 23467889999999995 433 7999999998865443332222222222223333   345566789


Q ss_pred             EEEEEeCCcc
Q psy16652        350 ACKAANKYGS  359 (384)
Q Consensus       350 ~C~a~n~~g~  359 (384)
                      +|.+....-.
T Consensus        79 tC~V~H~sl~   88 (99)
T d1lk2b_          79 ACRVKHDSMA   88 (99)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEEeCCCC
Confidence            9999986533

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.49  E-value=4.2e-07  Score=62.40  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      +....+.+|+.++|.|.........+.||+.  |..+.            ...++....   ........|.|.+++.+|
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL---HKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECC---BGGGTBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeec---cCCCCeEEeecccccccc
Confidence            3445578899999999987766678999983  21110            011222211   111234569999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16652        346 FGQYACKAANKYG  358 (384)
Q Consensus       346 ~G~Y~C~a~n~~g  358 (384)
                      +|.|.|.+....+
T Consensus        85 sg~YyCa~~~~~~   97 (115)
T d1lp9e1          85 SALYYCALFLASS   97 (115)
T ss_dssp             CEEEEEEEEECSS
T ss_pred             CccceEEEEcCCC
Confidence            9999998876543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-07  Score=65.33  Aligned_cols=91  Identities=10%  Similarity=0.174  Sum_probs=57.9

Q ss_pred             CCCcccccCCcEEEEEEEecc---CCCeEEEEECCEE-----e-cC--------CCceeeeeeeccCccccceEEEeecC
Q psy16652        280 RPRQGQALQYDAILECHVEAY---PPPAIVWIKDGVQ-----I-MN--------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~-----~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      |....+.+|++++|.|.....   ....+.|++....     + ..        ..+..+..   .......+|+|.+++
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~l~   82 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN---FPENGTFVVNIAQLS   82 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEee---eCCCCEEEEEEhhhC
Confidence            445667899999999987432   2235789874311     1 00        12222221   112234679999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652        343 RRQFGQYACKAANKYGSAQKEIELFDRETQT  373 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  373 (384)
                      .+|+|.|.|.+..........+.|.|.+...
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~~  113 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRGLSFDVSLEVLEHHH  113 (116)
T ss_dssp             GGGCEEEEEEESCGGGCCEEEEEEEEECCCC
T ss_pred             cCCCEEEEEEEEcCCCCceEeEEEEEECCCc
Confidence            9999999999876655556677888876643

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.48  E-value=5.1e-07  Score=60.85  Aligned_cols=85  Identities=22%  Similarity=0.398  Sum_probs=60.7

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-e-e-ccCcee----eeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-I-S-MSGSLI----IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~-~-~~~~~~----~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ....++++|+++.|.|.+.+..  ...+.|+|.......+-+. + . ..+...    ...+|+.+..+.......|.|.
T Consensus         7 sg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   86 (122)
T d1q9rb1           7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (122)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence            4455688999999999998753  4579999976543322221 1 1 111111    1246899998878888899999


Q ss_pred             ecCCCCCeeEEEEE
Q psy16652        150 EIQETDAGIYKCEV  163 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~  163 (384)
                      +++.+|++.|.|..
T Consensus        87 sL~~eDTAvYYCar  100 (122)
T d1q9rb1          87 TLRAEDSATYYCAR  100 (122)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eeccCcceEEEEEe
Confidence            99999999999975

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.9e-07  Score=60.68  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             ccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        286 ALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       286 ~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      ..+..++|.|.+.+ +|.. .|.|.++|..+.............+.....+.|.|..-.+.....|+|.|.+.....+.
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            34567899999998 4544 79999999998754333322223333334456777776666677899999998754443

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.46  E-value=3.7e-07  Score=62.42  Aligned_cols=86  Identities=20%  Similarity=0.354  Sum_probs=60.1

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eec-----cCcee----eeCCceEEeeCCCCceEEE
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISM-----SGSLI----IHDSRFQLTTDPETSTYIL  146 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~-----~~~~~----~~~~~~~~~~~~~~~~~~L  146 (384)
                      ...-++++|+++.|.|.+.+..  ...+.|+|.......+-+. +..     .....    ...+|+.+..+.......|
T Consensus         7 sG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L   86 (127)
T d1i3ua_           7 SGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL   86 (127)
T ss_dssp             ESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE
T ss_pred             ECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEE
Confidence            4455678999999999998753  5579999976443222221 110     11111    1235888888777788889


Q ss_pred             EEeecCCCCCeeEEEEEE
Q psy16652        147 SIKEIQETDAGIYKCEVI  164 (384)
Q Consensus       147 ~i~~~~~~d~G~Y~C~~~  164 (384)
                      .|.+++.+|++.|.|...
T Consensus        87 ~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeecccccceeEEEEEEE
Confidence            999999999999999764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.46  E-value=1.1e-06  Score=57.59  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=56.4

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      +|.+...| ...|..|++|+|.|.... ....+.++|.+.......               .............+.|.++
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~---------------~~~~~~~~~~~a~F~l~~v   64 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR---------------LIGEHHDGVSKANFSISRM   64 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE---------------EECEEETTEEEEEEEESSC
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCcee---------------eeeeecCCceEEEEEEccc
Confidence            56676665 566889999999998643 345788888775311000               0000111223346899999


Q ss_pred             CCCCCeeEEEEEEEccC----cceeeeEEEEE
Q psy16652        152 QETDAGIYKCEVIISLN----NKVSAEVELIV  179 (384)
Q Consensus       152 ~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v  179 (384)
                      +..|+|.|+|.......    ...+..++|.|
T Consensus        65 ~~~~~G~Y~C~y~~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          65 TQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             CGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEE
T ss_pred             CcccCeEEEEEEEcCCCCCcccCCCCCEEEEC
Confidence            99999999998864432    12355555543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.44  E-value=1e-06  Score=58.24  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+.+.+.. .+..|+.++|.|.+.|+.++  .+.|++||..+..+.... ......+.....+.|.   +..++.+.|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~---v~~~~~~~y   78 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLT---FIPSDDDIY   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEE---ECCCTTCCE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeE---EcCCCCCEE
Confidence            5666554332 34567889999999996433  899999998886432211 1111111222223333   344566789


Q ss_pred             EEEEEeCCcc
Q psy16652        350 ACKAANKYGS  359 (384)
Q Consensus       350 ~C~a~n~~g~  359 (384)
                      +|.+....-.
T Consensus        79 tC~V~H~sl~   88 (100)
T d1muja1          79 DCKVEHWGLE   88 (100)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEEECCCC
Confidence            9999987543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.44  E-value=9.7e-07  Score=60.00  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=58.2

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCccc-ceecc-Cceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPL-PISMS-GSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ...-++++|+++.|.|.+.+.  ....+.|+|.......+-+ .+... +....   ..+|+.+..+.......|.|+++
T Consensus         6 sG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l   85 (126)
T d1rjca1           6 SGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL   85 (126)
T ss_dssp             BCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc
Confidence            344567899999999999874  3567999997654322222 12222 11111   24689998877777888999999


Q ss_pred             CCCCCeeEEEEEE
Q psy16652        152 QETDAGIYKCEVI  164 (384)
Q Consensus       152 ~~~d~G~Y~C~~~  164 (384)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1rjca1          86 KPEDTAMYYCAAD   98 (126)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCceeEEEee
Confidence            9999999999753

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.43  E-value=1.1e-06  Score=60.08  Aligned_cols=87  Identities=16%  Similarity=0.290  Sum_probs=62.2

Q ss_pred             eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652         78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSLI----IHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      +....++++|+++.|.|.+.+..  ...+.|+|.......+-+ .+.......    ...+|+.+..+.......|.|++
T Consensus         5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            45556689999999999998753  557999997654322222 121111111    13579999998888888999999


Q ss_pred             cCCCCCeeEEEEEE
Q psy16652        151 IQETDAGIYKCEVI  164 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~  164 (384)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          85 LRSDDTAVYYCASN   98 (133)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCCCCCEEEEeeec
Confidence            99999999999653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=9e-07  Score=58.16  Aligned_cols=76  Identities=11%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             cCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652        287 LQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE  365 (384)
Q Consensus       287 ~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  365 (384)
                      .++.++|.|.+.| +|.+.|.|++||+.+.............+.....+.|.+.   ..+...|+|.+.+..-.....+.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~~~   91 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQTFN   91 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEEEE
Confidence            4677899999987 6888999999999886543322221112222223445554   34567999999998766655543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.43  E-value=1.3e-06  Score=57.82  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=57.0

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ..+|.+...|. ..|..|++|+|.|.... ....+.|+|++......                 ............+.|.
T Consensus         4 ~pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~-----------------~~~~~~~~~~~~f~~~   64 (99)
T d1nkra2           4 YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-----------------LPAGPKVNGTFQADFP   64 (99)
T ss_dssp             SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-----------------EECEEEETTEEEEEEE
T ss_pred             CCCCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccE-----------------EEccccCCccEEEEEe
Confidence            45788888774 46789999999998643 45578888876531100                 0000002223456778


Q ss_pred             ecCCCCCeeEEEEEEEccC----cceeeeEEEEE
Q psy16652        150 EIQETDAGIYKCEVIISLN----NKVSAEVELIV  179 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v  179 (384)
                      .+...|+|.|+|.......    ...+..++|.|
T Consensus        65 ~~~~~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          65 LGPATHGGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEECCSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             ccccccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence            8888999999998764332    22355566655

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.3e-07  Score=62.20  Aligned_cols=90  Identities=14%  Similarity=0.335  Sum_probs=55.6

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeee-eeeccCccccceEEEeecCCCCCeE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVS-HFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      .+|.+.+.++......+..++|.|.+.++ |.. .|.|.+||..+..+...... ....+.+...+.|+|..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            35666654444333346778999999984 433 79999999988654322111 1122222334556666655555668


Q ss_pred             EEEEEEeCCcceE
Q psy16652        349 YACKAANKYGSAQ  361 (384)
Q Consensus       349 Y~C~a~n~~g~~~  361 (384)
                      |+|.+.+......
T Consensus        84 ytC~V~H~~~~~~   96 (102)
T d1rzfl2          84 YSCQVTHEGSTVE   96 (102)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEECCccEE
Confidence            9999999865433

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=1.9e-07  Score=62.48  Aligned_cols=86  Identities=22%  Similarity=0.378  Sum_probs=60.3

Q ss_pred             CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeecC
Q psy16652         79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      ....++++|++++|.|.+.+.  ....+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.+++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (116)
T d1fn4b1           7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (116)
T ss_dssp             ECCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCC
T ss_pred             ECCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccC
Confidence            344557899999999999875  35679999976543323221 222222111   247888888777778889999999


Q ss_pred             CCCCeeEEEEEE
Q psy16652        153 ETDAGIYKCEVI  164 (384)
Q Consensus       153 ~~d~G~Y~C~~~  164 (384)
                      .+|++.|.|...
T Consensus        87 ~eDTAvYyCAr~   98 (116)
T d1fn4b1          87 TDDTGTYYCTRD   98 (116)
T ss_dssp             CCCCEEEEEEEE
T ss_pred             CCCCEEEEEEee
Confidence            999999999653

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.6e-07  Score=62.19  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      +|.+.+.++......++.++|.|.+.+ +|. ..|.|.+||.++.........  ....+.....+.|+|..-.+.....
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            455544333333445678999999988 443 389999999988654322211  1122223334567777666666678


Q ss_pred             EEEEEEeCCcce
Q psy16652        349 YACKAANKYGSA  360 (384)
Q Consensus       349 Y~C~a~n~~g~~  360 (384)
                      |+|.+.......
T Consensus        84 ytC~V~H~~l~~   95 (105)
T d1fp5a2          84 FICRAVHEAASP   95 (105)
T ss_dssp             EEEEEECTTSTT
T ss_pred             EEEEEEECCCCC
Confidence            999999875543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=9.9e-07  Score=57.88  Aligned_cols=79  Identities=22%  Similarity=0.386  Sum_probs=47.9

Q ss_pred             ccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccC-ce---eeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652         86 IAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSG-SL---IIHDSRFQLTTDPETSTYILSIKEIQETDAGI  158 (384)
Q Consensus        86 ~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~-~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  158 (384)
                      +|++++|.|.+.+..  ...+.|+|.......+-+. +.... ..   ....+|+.+..+.......|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            589999999998753  4579999976543222221 11111 11   12357898888877788899999999999999


Q ss_pred             EEEEEE
Q psy16652        159 YKCEVI  164 (384)
Q Consensus       159 Y~C~~~  164 (384)
                      |.|...
T Consensus        81 YYCAr~   86 (103)
T d1oari_          81 YYCARM   86 (103)
T ss_dssp             EEEEEE
T ss_pred             EEeEEE
Confidence            999754

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.39  E-value=7.8e-07  Score=59.66  Aligned_cols=87  Identities=17%  Similarity=0.318  Sum_probs=61.7

Q ss_pred             eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-ee--ccCce----eeeCCceEEeeCCCCceEEEE
Q psy16652         77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-IS--MSGSL----IIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      .+....++++|+++.|.|.+.+..  ...+.|+|.......+-+- +.  ..+..    ....+|+.+..+.......|.
T Consensus         5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~   84 (121)
T d1nfdf1           5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ   84 (121)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence            345566789999999999998854  4568999966542222111 11  11111    124578899988888888899


Q ss_pred             EeecCCCCCeeEEEEE
Q psy16652        148 IKEIQETDAGIYKCEV  163 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~  163 (384)
                      |.+++.+|++.|.|..
T Consensus        85 ~~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTR  100 (121)
T ss_dssp             EESCCGGGCEECEEEE
T ss_pred             ecccCCCcceEEEEec
Confidence            9999999999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.38  E-value=8e-07  Score=60.34  Aligned_cols=85  Identities=24%  Similarity=0.397  Sum_probs=59.4

Q ss_pred             CcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccc-eeccCceee---eCCceEEeeCCCCceEEEEEeec
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLP-ISMSGSLII---HDSRFQLTTDPETSTYILSIKEI  151 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~  151 (384)
                      ....++++|+++.|.|.+.+..   ...+.|+|.......+-+. +...+....   ..+|+.+..+.......|.|.++
T Consensus         7 SG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l   86 (127)
T d3cx5j1           7 SGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSV   86 (127)
T ss_dssp             EECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecc
Confidence            4455678999999999998753   3468999965442222111 222222111   24688888877788889999999


Q ss_pred             CCCCCeeEEEEE
Q psy16652        152 QETDAGIYKCEV  163 (384)
Q Consensus       152 ~~~d~G~Y~C~~  163 (384)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYyCAr   98 (127)
T d3cx5j1          87 TTEDTATYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccceEEEeee
Confidence            999999999974

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.4e-06  Score=56.83  Aligned_cols=82  Identities=13%  Similarity=0.306  Sum_probs=48.5

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .+|.+.+..    ...++.++|.|.+.| +|.. .+.|.+||+++............++. ..........+...+...|
T Consensus         3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~-~t~~~~s~l~v~~~~~~~y   77 (94)
T d1de4a1           3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGD-GTYQGWITLAVPPGEEQRY   77 (94)
T ss_dssp             BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTT-SCEEEEEEEEECTTCGGGE
T ss_pred             CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCC-ceEEEEEEEEECCCCCCEE
Confidence            456665422    234567899999999 4544 89999999998644322111111111 1222223334445566789


Q ss_pred             EEEEEeCCc
Q psy16652        350 ACKAANKYG  358 (384)
Q Consensus       350 ~C~a~n~~g  358 (384)
                      +|.+.+..-
T Consensus        78 tC~V~H~sl   86 (94)
T d1de4a1          78 TCQVEHPGL   86 (94)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999998743

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.37  E-value=2.4e-06  Score=56.72  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK  362 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  362 (384)
                      +..|+..+|.|.+.|+.+.  .|.|.+||..+............++.....+.|.+.   .++...|+|.+....-....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l~~p~   91 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPDRYTA   91 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTTTEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCCCCCE
Confidence            3457788999999995443  799999999875444333333333333333445444   34556799999998654444


Q ss_pred             EEEE
Q psy16652        363 EIEL  366 (384)
Q Consensus       363 ~~~l  366 (384)
                      ....
T Consensus        92 ~~~w   95 (103)
T d1hdma1          92 IAYW   95 (103)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            3333

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.36  E-value=2.3e-06  Score=56.41  Aligned_cols=85  Identities=18%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++. ....++..+|.|.+.|+.++  .|.|.+||..+..+..... .... .......+....+..++...|+
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~-~~~~-~dgtf~~~s~l~~~~~~~~~yt   80 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTG-LIQN-GDWTFQTLVMLETVPRSGEVYT   80 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECC-CEEC-SSSCEEEEEEEECCCCTTCEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECe-EEeC-CCcEEEEEEEeeEcCCCCCEEE
Confidence            4555543332 23345667899999995433  8999999998865422111 1111 1112233444456677888999


Q ss_pred             EEEEeCCcce
Q psy16652        351 CKAANKYGSA  360 (384)
Q Consensus       351 C~a~n~~g~~  360 (384)
                      |.+....-..
T Consensus        81 C~V~H~sl~~   90 (98)
T d1d5mb1          81 CQVEHPSVTS   90 (98)
T ss_dssp             EEEECTTCSS
T ss_pred             EEEEECCCCC
Confidence            9999875443

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=7.8e-07  Score=59.87  Aligned_cols=71  Identities=17%  Similarity=0.237  Sum_probs=47.5

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe---c---------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI---M---------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.........+.||+.  |..+   .         ..+++....     ......|+|.+++.+|
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG-----SGRDYSFSISNLEPED   81 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEECSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec-----CCCEeeeEehhhcccC
Confidence            4445678999999999987655557999982  1111   0         112222221     1134679999999999


Q ss_pred             CeEEEEEEEe
Q psy16652        346 FGQYACKAAN  355 (384)
Q Consensus       346 ~G~Y~C~a~n  355 (384)
                      +|.|.|.+.+
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.34  E-value=1.1e-06  Score=60.22  Aligned_cols=75  Identities=11%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CE---Eec--C--------CCceeeeeeeccCccccceEEEeecCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GV---QIM--N--------NQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~---~~~--~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +....+.+|+.++|.|.........+.||+.  |+   .+.  .        ..++....   ........|+|.+++.+
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEF---KKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEEC---BGGGTBCCEEESSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEE---CCCCCEEEEeecccccc
Confidence            4445678999999999987655668999982  21   110  0        01111111   11123457999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy16652        345 QFGQYACKAANKY  357 (384)
Q Consensus       345 d~G~Y~C~a~n~~  357 (384)
                      |+|.|.|.+....
T Consensus        84 Dsa~YyCa~~~~~   96 (115)
T d1j8hd1          84 DAAEYFCAVSESP   96 (115)
T ss_dssp             GCEEEEEEEESST
T ss_pred             CCccceeeecCCC
Confidence            9999999997643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.34  E-value=5.8e-07  Score=61.51  Aligned_cols=77  Identities=12%  Similarity=0.205  Sum_probs=51.2

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------c------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------M------NNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      .|....+.+|+.++|.|...+.....+.||+.  |..+      .      ..+++.....   .......|+|.+++.+
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD---KSSGRSTLYIAASQPG   82 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEE---TTTTEEEEEESSCCGG
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeec---cCCCEEEeeeecCCCC
Confidence            34456678999999999997765567999982  2111      0      0112222111   1223567999999999


Q ss_pred             CCeEEEEEEEeCCc
Q psy16652        345 QFGQYACKAANKYG  358 (384)
Q Consensus       345 d~G~Y~C~a~n~~g  358 (384)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999999986554

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.34  E-value=2e-06  Score=59.04  Aligned_cols=80  Identities=16%  Similarity=0.318  Sum_probs=51.2

Q ss_pred             cCCCcccccCCcEEEEEEEecc-CCCeEEEEEC--CEEe---c------------CCCceeeeeeeccCccccceEEEee
Q psy16652        279 NRPRQGQALQYDAILECHVEAY-PPPAIVWIKD--GVQI---M------------NNQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~--~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .++...+.+|++++|.|..... ....+.|++.  |..+   .            ..+++......   ......|+|.+
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~~   82 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL---TQKAFHLVISP   82 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG---GGTEEEEEESS
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecC---ceeEEeeeecC
Confidence            4555668899999999998543 4557999971  2111   0            01232222111   11234799999


Q ss_pred             cCCCCCeEEEEEEEeCCcceE
Q psy16652        341 IERRQFGQYACKAANKYGSAQ  361 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~g~~~  361 (384)
                      ++.+|+|.|.|.+....+...
T Consensus        83 ~~~~Dsg~YyCa~~~~~~~~~  103 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPPTDK  103 (116)
T ss_dssp             CCGGGCEEEEEEEECTTTTCC
T ss_pred             ccccccccceeeEecCCCCce
Confidence            999999999998877655443

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.33  E-value=5.3e-07  Score=60.34  Aligned_cols=85  Identities=19%  Similarity=0.339  Sum_probs=52.2

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++......++.++|.|.+.|+ |.. .|.|.+||................+.+...+.|.|..-.++....|+
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~yt   83 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYS   83 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEE
Confidence            3555444333333357789999999984 543 89999999875433221111122222333456777666656667899


Q ss_pred             EEEEeCC
Q psy16652        351 CKAANKY  357 (384)
Q Consensus       351 C~a~n~~  357 (384)
                      |.+....
T Consensus        84 C~V~H~~   90 (102)
T d1igtb4          84 CSVVHEG   90 (102)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9999865

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.32  E-value=7.7e-08  Score=64.78  Aligned_cols=89  Identities=16%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++...-..+..++|.|.+.| +|.. .|.|.+||..+.............+.+...+.|.|.....++...|+
T Consensus         5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~yt   84 (104)
T d1nfde2           5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVS   84 (104)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEE
T ss_pred             CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEE
Confidence            466655444333234567899999998 4433 89999999998754332222212222223455666666666667899


Q ss_pred             EEEEeCCcceE
Q psy16652        351 CKAANKYGSAQ  361 (384)
Q Consensus       351 C~a~n~~g~~~  361 (384)
                      |.|.+......
T Consensus        85 C~V~H~~~~~~   95 (104)
T d1nfde2          85 CQVTHEGETVE   95 (104)
T ss_dssp             EEEECTTTTCC
T ss_pred             EEEEECCCcEE
Confidence            99999876544

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.5e-07  Score=60.83  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             cccccCCcEEEEEEEeccCC----CeEEEEECCEEecCC--Cceeeeee----eccCccccceEEEeecCCCCCeEEEEE
Q psy16652        283 QGQALQYDAILECHVEAYPP----PAIVWIKDGVQIMNN--QHYSVSHF----ATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      ..+..|+.++|.|.......    ..+.|.+++..+..-  ........    .......+.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            34678999999998754221    257888877654211  11100000    000011356899999999999999999


Q ss_pred             EEeCCcceE
Q psy16652        353 AANKYGSAQ  361 (384)
Q Consensus       353 a~n~~g~~~  361 (384)
                      +.+..+...
T Consensus        84 V~~~~~~~~   92 (105)
T d1dr9a1          84 VLKYEKDAF   92 (105)
T ss_dssp             EEECCTTSC
T ss_pred             EEeCCCCCe
Confidence            987655443

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=2e-06  Score=58.07  Aligned_cols=68  Identities=24%  Similarity=0.355  Sum_probs=47.3

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEE
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTY  250 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y  250 (384)
                      .|..+.+.+|++++|.|.........+.||+.......              ......    ....|.|.+++.+|+|.|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y   86 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY   86 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence            35667899999999999986655557999984321100              001111    224799999999999999


Q ss_pred             EEEEEe
Q psy16652        251 YCVAQN  256 (384)
Q Consensus       251 ~C~~~~  256 (384)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1kcvl1          87 YCGQSY   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            998754

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.31  E-value=2e-06  Score=58.75  Aligned_cols=86  Identities=20%  Similarity=0.353  Sum_probs=60.8

Q ss_pred             CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-ee--ccCcee----eeCCceEEeeCCCCceEEEEEe
Q psy16652         79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-IS--MSGSLI----IHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      ....++++|++++|.|.+.+..  ...+.|+|.......+-+- +.  ......    ...+|+.+..+.......|.|.
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~   86 (131)
T d3c2ah1           7 SGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMN   86 (131)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeeccee
Confidence            4455679999999999998753  4579999976543222111 11  111111    2357899988877888899999


Q ss_pred             ecCCCCCeeEEEEEE
Q psy16652        150 EIQETDAGIYKCEVI  164 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~  164 (384)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          87 SLKTEDTAVYSCTTD  101 (131)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCCceEEEEecc
Confidence            999999999999754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.4e-07  Score=59.72  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++.......+.++|.|.+.|+ |.. .|.|.+||..+............++.+...+.|+|..-.......|+
T Consensus         3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~yt   82 (101)
T d1cqka_           3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFT   82 (101)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEE
Confidence            3444443333223345678999999994 544 79999999887543222222222233334556777666666677899


Q ss_pred             EEEEeCC
Q psy16652        351 CKAANKY  357 (384)
Q Consensus       351 C~a~n~~  357 (384)
                      |.+....
T Consensus        83 C~V~H~~   89 (101)
T d1cqka_          83 CSVLHEG   89 (101)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9999864

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.5e-06  Score=58.54  Aligned_cols=68  Identities=22%  Similarity=0.320  Sum_probs=47.9

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------CceeE----eccEEEEcCCCCCCCeEE
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSIY----RGNILKIPNITKTDRGTY  250 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~~----~~~~l~i~~~~~~d~G~Y  250 (384)
                      .|..+.+.+|++++|.|...+.....+.||+......+.              .+...    ....|.|.+++.+|+|.|
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATY   86 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcE
Confidence            466788999999999999866555579999843211100              01111    224899999999999999


Q ss_pred             EEEEEe
Q psy16652        251 YCVAQN  256 (384)
Q Consensus       251 ~C~~~~  256 (384)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1ospl1          87 FCQQYW   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeecc
Confidence            998754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.7e-06  Score=56.43  Aligned_cols=98  Identities=17%  Similarity=0.126  Sum_probs=53.5

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeec-CCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQY-ADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ..|.|....   .+.+|+.++|.|.+.+ .|..  .+.|++++.......     ........+.+..       ...|.
T Consensus         3 ~~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~-----~~~~~~~~~~~~~-------~s~l~   67 (109)
T d1vcaa1           3 KDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQE-----FLEDADRKSLETK-------SLEVT   67 (109)
T ss_dssp             SCCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEE-----CCSCCSSCCCEEE-------EEEEE
T ss_pred             CCCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccc-----cccccccCCccee-------eEEEE
Confidence            455665432   3789999999999976 4533  588998765421100     0000011112211       22466


Q ss_pred             EeecCCCCCeeEEEEEEEccCcc------eeeeEEEEEecCC
Q psy16652        148 IKEIQETDAGIYKCEVIISLNNK------VSAEVELIVRRPP  183 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~~~~~------~~~~~~l~v~~~~  183 (384)
                      +.....+|...|+|+|.+.....      ......|.|..+|
T Consensus        68 ~~~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          68 FTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             ECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             ccCChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            65444444449999999765432      2334456666543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.29  E-value=1.3e-06  Score=58.78  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------------cCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------------MNNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.........+.||+.  |..+            ....++....     ......|+|.+++.+|
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~-----~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG-----TGTDFVFTIENTLSED   82 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC-----CCCeeeecccCCcccc
Confidence            3445578999999999987655567999972  2111            0112222211     1134679999999999


Q ss_pred             CeEEEEEEEe
Q psy16652        346 FGQYACKAAN  355 (384)
Q Consensus       346 ~G~Y~C~a~n  355 (384)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999997654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.2e-06  Score=56.63  Aligned_cols=70  Identities=17%  Similarity=0.268  Sum_probs=45.7

Q ss_pred             ceEEeecCceEEEEEEeccc--CCCeEEEEeCCCccc-------------c-cCceeE------eccEEEEcCCCCCCCe
Q psy16652        191 RSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAAL-------------S-TGGSIY------RGNILKIPNITKTDRG  248 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~-------------~-~~~~~~------~~~~l~i~~~~~~d~G  248 (384)
                      ..+...+|++++|.|.....  ....+.|++......             . ..+...      ....|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            45678899999999987542  234678987321100             0 011111      1237999999999999


Q ss_pred             EEEEEEEeCCCC
Q psy16652        249 TYYCVAQNGVGR  260 (384)
Q Consensus       249 ~Y~C~~~~~~~~  260 (384)
                      .|.|.+......
T Consensus        84 ~Y~C~v~~~~~~   95 (108)
T d1hkfa_          84 HYWCRIYRPSDN   95 (108)
T ss_dssp             EEEEEEECTTTC
T ss_pred             EEEEEEecCCCC
Confidence            999998865443

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.6e-06  Score=56.84  Aligned_cols=64  Identities=16%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652        194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG  257 (384)
Q Consensus       194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  257 (384)
                      .+..|++++|.|.........+.|+|++...............+.|.+++.+|+|.|+|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            5889999999998643344578999988644332211112346889999999999999988754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=9.2e-07  Score=59.17  Aligned_cols=86  Identities=17%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++......++.++|.|.+.|+ |.. .|.|.+||.+.............++.....+.|.+..-.....-.|+
T Consensus         4 ~P~V~i~~ps~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~yt   83 (102)
T d1l6xa2           4 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS   83 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECcCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEE
Confidence            3544443333333356789999999984 443 89999999876532221111222222333455777666555556899


Q ss_pred             EEEEeCCc
Q psy16652        351 CKAANKYG  358 (384)
Q Consensus       351 C~a~n~~g  358 (384)
                      |.|.+..-
T Consensus        84 C~V~H~~l   91 (102)
T d1l6xa2          84 CSVMHEAL   91 (102)
T ss_dssp             EEEECTTS
T ss_pred             EEEEeCCC
Confidence            99998653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.28  E-value=1.3e-06  Score=60.12  Aligned_cols=74  Identities=14%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEec-------------C----CCceeeeeeeccCccccceEEEee
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM-------------N----NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~-------------~----~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      |....+.+|++++|.|...+.....+.||+.  |+.+.             .    ..++...    ........|+|.+
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~L~i~~   83 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLIN----HASPTLSTLTVTS   83 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEE----ECSSSEEEEEECS
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceee----ccccccccccccc
Confidence            3344578899999999987766678999982  21110             0    0111111    1112345799999


Q ss_pred             cCCCCCeEEEEEEEeCC
Q psy16652        341 IERRQFGQYACKAANKY  357 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n~~  357 (384)
                      ++.+|+|.|.|.+.-..
T Consensus        84 ~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CCGGGCEEEEEEEECSS
T ss_pred             cccccCceEEEEEecCC
Confidence            99999999999986544

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.27  E-value=5.3e-06  Score=54.47  Aligned_cols=85  Identities=15%  Similarity=0.255  Sum_probs=50.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+.+.+.. ....++.++|.|.+.|+.+.  .++|.+||..+..+... ......++.....+.|.+   ..++...|
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~y   78 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTY   78 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEE
Confidence            4555543222 23456789999999995333  89999999988654322 222222222222333444   44555689


Q ss_pred             EEEEEeCCcceE
Q psy16652        350 ACKAANKYGSAQ  361 (384)
Q Consensus       350 ~C~a~n~~g~~~  361 (384)
                      +|.+........
T Consensus        79 tC~V~H~sl~~p   90 (98)
T d1hdmb1          79 TCVVEHIGAPEP   90 (98)
T ss_dssp             EEEEECTTSSSC
T ss_pred             EEEEEeCCCCCC
Confidence            999999865543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=2.1e-06  Score=57.90  Aligned_cols=67  Identities=22%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------Ccee----EeccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSI----YRGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~----~~~~~l~i~~~~~~d~G~Y~  251 (384)
                      +..+.+.+|++++|.|.........+.||+....-...              .+..    .....|.|.+++.+|+|.|.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence            56678999999999999865455579999854211100              0110    01248999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1j1pl_          88 CQQAN   92 (107)
T ss_dssp             EEECS
T ss_pred             EEcCC
Confidence            97654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-06  Score=56.91  Aligned_cols=91  Identities=14%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...|. ..|..|++|+|.|... .+...+.++|++....   ... ....  .           ......+.|.+
T Consensus         3 PkP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~---~~~-~~~~--~-----------~~~~a~F~i~~   63 (96)
T d1ugna1           3 PKPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAP---WIT-RIPQ--E-----------LVKKGQFPIPS   63 (96)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCH---HHH-TSCH--H-----------HHTTTEEEESS
T ss_pred             CCCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcc---cEE-EccC--C-----------CCCEEEEEEEe
Confidence            4678877766 5578999999999864 3445677777654310   000 0000  0           01123689999


Q ss_pred             cCCCCCeeEEEEEEEccC--cceeeeEEEEEe
Q psy16652        151 IQETDAGIYKCEVIISLN--NKVSAEVELIVR  180 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~  180 (384)
                      ++.+|+|.|+|.......  ...+..++|.|.
T Consensus        64 v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          64 ITWEHTGRYRCYYGSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             CCGGGCEEEEEEEEETTTEECCCCCCEEEEEE
T ss_pred             cCHHHCCeEEEEEeCCCCCccccCCCEEEEEe
Confidence            999999999998764322  133555666553

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.25  E-value=1.5e-06  Score=58.39  Aligned_cols=71  Identities=21%  Similarity=0.335  Sum_probs=47.6

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe----c--------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI----M--------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~----~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.........+.|++.  |..+    .        ..+++....     ......|.|.+++.+|
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR-----SGSDYSLTISSLESED   82 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc-----cCCEEEEEEhhhcccC
Confidence            3344578899999999987766667999982  2211    0        112222211     1134679999999999


Q ss_pred             CeEEEEEEEe
Q psy16652        346 FGQYACKAAN  355 (384)
Q Consensus       346 ~G~Y~C~a~n  355 (384)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1c5cl1          83 FADYYCLQYA   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CeEEEEecCc
Confidence            9999997654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.4e-06  Score=58.82  Aligned_cols=88  Identities=23%  Similarity=0.361  Sum_probs=54.0

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeee--eeccCccccceEEEeecCCCCCeE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSH--FATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      +|.+.+.++......+..++|.|.+.|+ |.. .|.|.+||..+..........  ..++.+...+.|.|..-.+.....
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~   84 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS   84 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCE
Confidence            4555554443333346789999999884 443 899999999886432111111  111222334567777666666678


Q ss_pred             EEEEEEeCCcce
Q psy16652        349 YACKAANKYGSA  360 (384)
Q Consensus       349 Y~C~a~n~~g~~  360 (384)
                      |+|.|.......
T Consensus        85 ytC~V~H~~~~~   96 (107)
T d1mjul2          85 YTCEATHKTSTS   96 (107)
T ss_dssp             EEEEEECTTCSS
T ss_pred             EEEEEEECCCCC
Confidence            999999876544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.25  E-value=2.9e-06  Score=57.54  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             CCCcccccCCcEEEEEEEecc--CCCeEEEEEC------CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        280 RPRQGQALQYDAILECHVEAY--PPPAIVWIKD------GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      |..+.+..|+.++|.|...+.  ....+.||+.      ...+....++......   ......|+|.+++.+|+|.|.|
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~---~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNS---GSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEET---TTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEec---CCceeeeEecCCcCccCEEEeE
Confidence            344556789999999988653  4457999982      2233333444333221   1234579999999999999999


Q ss_pred             EEEeCC
Q psy16652        352 KAANKY  357 (384)
Q Consensus       352 ~a~n~~  357 (384)
                      .+....
T Consensus        83 A~~~~~   88 (112)
T d1sq2n_          83 GLGVAG   88 (112)
T ss_dssp             EECBTT
T ss_pred             EEecCC
Confidence            876543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=1.1e-06  Score=58.68  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++.......+.++|.|.+.|..+.  .|.|.++|.+.............++.....+.|.|......+...|+
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~yt   83 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFT   83 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEE
Confidence            3444443333333345789999999885433  79999999876432221112222222233455777776666667899


Q ss_pred             EEEEeCCcc
Q psy16652        351 CKAANKYGS  359 (384)
Q Consensus       351 C~a~n~~g~  359 (384)
                      |.|....-.
T Consensus        84 C~V~H~~~~   92 (102)
T d1i1ca2          84 CSVLHEGLE   92 (102)
T ss_dssp             EEEECTTSG
T ss_pred             EEEEeCCCC
Confidence            999986443

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.25  E-value=4.3e-06  Score=55.34  Aligned_cols=84  Identities=17%  Similarity=0.245  Sum_probs=49.9

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      .+|.+.+.+.. ....|+..+|.|.+.|+ |.. .+.|.+||+++..+... .......+.....+.|.+..   .+...
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDF   79 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCE
Confidence            35665553322 23457788999999995 444 89999999988654221 11122222222334454443   44558


Q ss_pred             EEEEEEeCCcc
Q psy16652        349 YACKAANKYGS  359 (384)
Q Consensus       349 Y~C~a~n~~g~  359 (384)
                      |+|.+....-.
T Consensus        80 ytC~V~H~sl~   90 (101)
T d1fnga1          80 YDCEVDHWGLE   90 (101)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999987543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.2e-06  Score=59.98  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             EEecCCCcccccCCcEEEEEEEeccC-CCeEEEEECC----EE----ec-CC-----------CceeeeeeeccCccccc
Q psy16652        276 ITINRPRQGQALQYDAILECHVEAYP-PPAIVWIKDG----VQ----IM-NN-----------QHYSVSHFATSDEFSDT  334 (384)
Q Consensus       276 ~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~----~~----~~-~~-----------~~~~~~~~~~~~~~~~~  334 (384)
                      +...|....+.+|++++|.|.+.... ...+.|++..    ..    +. ..           .++....     .....
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~-----~~~~~   77 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR-----LGDTF   77 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE-----ETTEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC-----CCCCh
Confidence            34556777889999999999986533 3468999822    10    00 00           1111111     11245


Q ss_pred             eEEEeecCCCCCeEEEEEEEeC
Q psy16652        335 SLRVITIERRQFGQYACKAANK  356 (384)
Q Consensus       335 ~l~i~~~~~~d~G~Y~C~a~n~  356 (384)
                      .|+|.+++.+|+|.|.|.+...
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             hcEEccCCCCCCEEEeEeEcCC
Confidence            7999999999999999998654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=2.8e-06  Score=57.12  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=46.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      ++.+.+.+|++++|.|...+.....+.|++....-.+              ......    ....|.|.+++.+|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            3457789999999999987655557999974321100              001111    1248999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |....
T Consensus        87 Ca~~~   91 (106)
T d1lk3l1          87 CQQSW   91 (106)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            97653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.23  E-value=4.7e-06  Score=56.73  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             CCCcccccCCcEEEEEEEecc--CCCeEEEEEC--C----EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652        280 RPRQGQALQYDAILECHVEAY--PPPAIVWIKD--G----VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC  351 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  351 (384)
                      |....+.+|++++|.|...+.  ....+.|++.  +    ..+....++......   ......|+|.+++.+|+|.|.|
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK---GSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEET---TTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeEC---CCCceeeeecccccCCcceEee
Confidence            444567899999999999753  4456999972  2    222333444333211   1234579999999999999999


Q ss_pred             EEEeC
Q psy16652        352 KAANK  356 (384)
Q Consensus       352 ~a~n~  356 (384)
                      .+...
T Consensus        84 a~~~~   88 (113)
T d1vesa_          84 QAFYS   88 (113)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            98653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.7e-06  Score=58.50  Aligned_cols=85  Identities=15%  Similarity=0.313  Sum_probs=54.9

Q ss_pred             cCeEEec-CCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeee-----eccCccccceEEEeecCCC
Q psy16652        273 APVITIN-RPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHF-----ATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       273 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~  344 (384)
                      +|.+.+. ++......++.++|.|.+.++ |.. .|.|++||.++...........     ..+.+...+.|+|..-.+.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            5665543 444456678899999999884 444 8999999998865533322111     1112223455666666655


Q ss_pred             CCeEEEEEEEeCC
Q psy16652        345 QFGQYACKAANKY  357 (384)
Q Consensus       345 d~G~Y~C~a~n~~  357 (384)
                      ....|+|.|.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            5678999998865

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.21  E-value=2.2e-06  Score=58.74  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEE--CCE---Eec----CC------CceeeeeeeccCccccceEEEeecCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIK--DGV---QIM----NN------QHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~---~~~----~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +....+.+|++++|.|.........+.||+  .|.   .+.    ..      .+...   ..........|+|.+++.+
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEA---EFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEE---ECBTTTTBCCEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeE---EEeCcCCEEEEeccccccc
Confidence            334567899999999998765566789997  221   110    00      01111   1111223467999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.8e-06  Score=54.50  Aligned_cols=83  Identities=17%  Similarity=0.278  Sum_probs=49.6

Q ss_pred             ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        272 FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      .||.+.+...   ...++.++|.|.+.|+ |.. .|.|.+||..+.............+   .........+...+...|
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~---t~~~~s~l~~~~~~~~~y   75 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNG---TYQSWVVVAVPPQDTAPY   75 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTT---EEEEEEEEEECTTCCSCE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCC---eEEEEEEeEeCCCCCCEE
Confidence            3555554222   1246789999999994 443 7999999998764333222221111   222333444455666789


Q ss_pred             EEEEEeCCcce
Q psy16652        350 ACKAANKYGSA  360 (384)
Q Consensus       350 ~C~a~n~~g~~  360 (384)
                      +|.+....-..
T Consensus        76 tC~V~H~sl~~   86 (94)
T d1t7va1          76 SCHVQHSSLAQ   86 (94)
T ss_dssp             EEEEEETTCSS
T ss_pred             EEEEEECCCCC
Confidence            99999875443

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=2.7e-06  Score=57.68  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=47.5

Q ss_pred             CCcccccCCcEEEEEEEecc-CCCeEEEEEC--CEE---ec-------CCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652        281 PRQGQALQYDAILECHVEAY-PPPAIVWIKD--GVQ---IM-------NNQHYSVSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      +.+.+.+|+.++|.|...+. ....+.||+.  |..   +.       ...+..+.   .........|+|.+++.+|+|
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLI---ITEDRKSSTLILPHATLRDTA   82 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEE---ECTTCSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceee---ecccCCeeeehhcccccCCce
Confidence            34567889999999997653 3346899982  211   10       01111111   112224567999999999999


Q ss_pred             EEEEEEEeCCc
Q psy16652        348 QYACKAANKYG  358 (384)
Q Consensus       348 ~Y~C~a~n~~g  358 (384)
                      .|.|.+....+
T Consensus        83 ~YyCa~~~~~~   93 (110)
T d2esvd1          83 VYYCIVVRSSN   93 (110)
T ss_dssp             EEEEEEEESCS
T ss_pred             EEEEEEeCCCC
Confidence            99999875443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=1.6e-06  Score=59.43  Aligned_cols=78  Identities=15%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             cCCCcccccCCcEEEEEEEec-cCCCeEEEEEC--CEE---ec---C-C------CceeeeeeeccCccccceEEEeecC
Q psy16652        279 NRPRQGQALQYDAILECHVEA-YPPPAIVWIKD--GVQ---IM---N-N------QHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~--~~~---~~---~-~------~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+....+.+|++++|.|.... .....+.||+.  +..   +.   . .      .+.....   ........|+|.+++
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNF---QKSTSSFNFTITASQ   82 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEE---ETTTTEEEEEESSCC
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEE---cCCCCEEEEeecccc
Confidence            345556889999999998754 34456899982  211   10   0 0      1111111   111235679999999


Q ss_pred             CCCCeEEEEEEEeCCcc
Q psy16652        343 RRQFGQYACKAANKYGS  359 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g~  359 (384)
                      .+|+|.|.|.+....+.
T Consensus        83 ~~Dsg~YyCa~~~~~~~   99 (114)
T d2ak4d1          83 VVDSAVYFCALSGFYNT   99 (114)
T ss_dssp             GGGCEEEEEEEECSBTT
T ss_pred             cccCCCceEeCCCCCCC
Confidence            99999999988766543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=4.4e-06  Score=56.11  Aligned_cols=67  Identities=18%  Similarity=0.349  Sum_probs=46.3

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      |..+.+.+|++++|.|.........+.||+....-..              ......    ....|.|.+++.+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence            5567789999999999986654557999984321110              000111    1237999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |...+
T Consensus        88 CA~~~   92 (108)
T d1jhll_          88 CQQHN   92 (108)
T ss_dssp             EEECS
T ss_pred             EeeCC
Confidence            97654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.19  E-value=3.3e-06  Score=56.69  Aligned_cols=71  Identities=11%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECC-----EEec---------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDG-----VQIM---------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.........+.||+..     +.+.         ..+++....     ......|.|.+++.+|
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~D   81 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG-----SGTEFTLTISGLQFDD   81 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEEESCCGGG
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec-----cCCEEEEEEccccccC
Confidence            44556789999999999876555679999832     1110         112322221     1234579999999999


Q ss_pred             CeEEEEEEEe
Q psy16652        346 FGQYACKAAN  355 (384)
Q Consensus       346 ~G~Y~C~a~n  355 (384)
                      +|.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1op3k1          82 FATYHCQHYA   91 (106)
T ss_dssp             CSEEEEEEEC
T ss_pred             CCcEeeeeCC
Confidence            9999998654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=2.3e-06  Score=57.64  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             cCCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------------cCCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------------MNNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      .|....+.+|++++|.|.........+.||+.  |+.+            ....++....     ......|+|.+++.+
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~   81 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG-----SGTDYSLTISNLEPE   81 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE-----ETTEEEEECSCCCSC
T ss_pred             cCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc-----cCCEEEEEEeEeeec
Confidence            35556788999999999987766667999972  2111            0112222211     123467999999999


Q ss_pred             CCeEEEEEEE
Q psy16652        345 QFGQYACKAA  354 (384)
Q Consensus       345 d~G~Y~C~a~  354 (384)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (107)
T d3cx5k1          82 DIATYFCQHH   91 (107)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcEEeeeC
Confidence            9999999754

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.18  E-value=3.4e-06  Score=54.70  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=44.1

Q ss_pred             CCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652        288 QYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA  360 (384)
Q Consensus       288 g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  360 (384)
                      +..++|.|.+.|+ |.. .+.|.+||..+... .........+.....+.|.+.   .++...|+|.+....-..
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~-~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~~   85 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSG-NCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLAQ   85 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCC-EEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCcc-CccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence            4578999999994 443 89999999887543 333333333333333445543   345568999999875443

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.18  E-value=2.7e-06  Score=56.93  Aligned_cols=67  Identities=28%  Similarity=0.423  Sum_probs=46.2

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------Ccee----EeccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSI----YRGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~----~~~~~l~i~~~~~~d~G~Y~  251 (384)
                      ++.+.+.+|++++|.|.........+.||+........              ....    .....|.|.+++.+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            34678899999999999865444568999843211100              0000    01247999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |.+.+
T Consensus        85 CA~~~   89 (103)
T d8faba1          85 CQAWD   89 (103)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            98764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1e-05  Score=53.24  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=48.3

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE  150 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (384)
                      .+|.+...|. ..|..|++|+|.|.... ....+.++|.+.........           .   ...........+.|.+
T Consensus         3 pkPsLsa~P~-~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~-----------~---~~~~~~~~~a~F~l~~   66 (98)
T d1ugna2           3 IKPTLSAQPS-PVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLN-----------S---QPHARGSSRAIFSVGP   66 (98)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECSS-CCSEEEEEEC------CEEE-----------C---------CCEEEEEECC
T ss_pred             CCCEEEeeCC-CccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeee-----------e---EEcCCCceEEEEEeee
Confidence            5678888774 45889999999998643 34466667755431100000           0   0000022344689999


Q ss_pred             cCCCCCeeEEEEEEEc
Q psy16652        151 IQETDAGIYKCEVIIS  166 (384)
Q Consensus       151 ~~~~d~G~Y~C~~~~~  166 (384)
                      ++.+|+|.|+|.....
T Consensus        67 v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          67 VSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             CCTTSCEEEEEEEECT
T ss_pred             cccCCCeEEEEeeEcC
Confidence            9999999999988643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.1e-06  Score=55.59  Aligned_cols=82  Identities=10%  Similarity=0.174  Sum_probs=48.9

Q ss_pred             ccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCC--CCeEEEEEEEeCCcc
Q psy16652        284 GQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR--QFGQYACKAANKYGS  359 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~G~Y~C~a~n~~g~  359 (384)
                      .....+.++|.|.+.|+ |.. .|.|.++|................+.+...+.|+|......  ....|+|.|....+.
T Consensus        17 ~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          17 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             ccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            34456789999999994 443 89999999776543221111122222233455666665543  234799999999877


Q ss_pred             eEEEEE
Q psy16652        360 AQKEIE  365 (384)
Q Consensus       360 ~~~~~~  365 (384)
                      ....+.
T Consensus        97 ~~~~v~  102 (105)
T d1dn0b2          97 KEKNVP  102 (105)
T ss_dssp             EEEEEE
T ss_pred             EEeEEe
Confidence            665543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.16  E-value=3.1e-06  Score=56.95  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             cCeEEecC-CCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINR-PRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+.+.+ .......+..++|.|.+.++.+.  .|.|.+||..+.............+.....+.|++..-..  ...|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~y   85 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEH   85 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeE
Confidence            55555543 33455667889999999985434  7999999987765433222222222233334455544333  2369


Q ss_pred             EEEEEeCCcce
Q psy16652        350 ACKAANKYGSA  360 (384)
Q Consensus       350 ~C~a~n~~g~~  360 (384)
                      +|.|.......
T Consensus        86 tC~V~H~s~~~   96 (107)
T d1hxmb2          86 RCIVRHENNKN   96 (107)
T ss_dssp             EEEEEETTSGG
T ss_pred             EEEEEECCCCC
Confidence            99999875544

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.9e-06  Score=56.01  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=54.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeee--eccCccccceEEEeecCCCCCeE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHF--ATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      +|.+.+.++......++.++|.|.+.|+ |.. .|.|.+||..+...........  ..+.+...+.|.|..-.+.....
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            5555554443333346789999999884 443 8999999987764432221111  11222334567777666666668


Q ss_pred             EEEEEEeCCcce
Q psy16652        349 YACKAANKYGSA  360 (384)
Q Consensus       349 Y~C~a~n~~g~~  360 (384)
                      |+|.|.+.....
T Consensus        85 ytC~V~H~~~~~   96 (107)
T d1c5cl2          85 YACEVTHQGLSS   96 (107)
T ss_dssp             EEEEEECTTCSS
T ss_pred             EEEEEEECCCCC
Confidence            999999976543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.15  E-value=2.4e-06  Score=56.06  Aligned_cols=68  Identities=19%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             cCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        287 LQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       287 ~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      .++.++|.|.+.| +|.. .+.|.+++..+.............+.....+.|.+..   +|...|+|.+....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            3568999999998 4545 8999999988755433333333333333334455554   44557999999865

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.15  E-value=4.7e-06  Score=55.98  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEE
Q psy16652        189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTY  250 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y  250 (384)
                      ++..+.+.+|++++|.|.........+.||+.......              ..+...    ....|.|.+++.+|++.|
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   86 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEY   86 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeE
Confidence            45667789999999999976544457999974321100              011111    124799999999999999


Q ss_pred             EEEEEe
Q psy16652        251 YCVAQN  256 (384)
Q Consensus       251 ~C~~~~  256 (384)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1mexl1          87 FCQQYN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeECC
Confidence            998653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.15  E-value=4.3e-06  Score=56.20  Aligned_cols=67  Identities=21%  Similarity=0.339  Sum_probs=46.8

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      |..+.+.+|++++|.|.........+.|++.......              ......    ....|.|.+++.+|++.|.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy   87 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence            5667789999999999987655568899984321110              001111    1237999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1tjgl1          88 CQQLH   92 (107)
T ss_dssp             EEECS
T ss_pred             EEECc
Confidence            97654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.13  E-value=5.1e-06  Score=54.42  Aligned_cols=66  Identities=14%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECC--EE---e---c-----CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652        288 QYDAILECHVEAYPPPAIVWIKDG--VQ---I---M-----NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA  354 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~~v~W~~~~--~~---~---~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  354 (384)
                      |+.++|.|.........+.|++..  ..   +   .     ...++....   .......+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~---~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQL---NKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEE---ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEe---cCCCCEEeEEeeccccCcCccceeeEe
Confidence            688999999877667789999821  11   1   0     011222211   111234679999999999999999887


Q ss_pred             eC
Q psy16652        355 NK  356 (384)
Q Consensus       355 n~  356 (384)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.4e-06  Score=54.87  Aligned_cols=62  Identities=19%  Similarity=0.323  Sum_probs=45.2

Q ss_pred             EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEE
Q psy16652        193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ  255 (384)
Q Consensus       193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  255 (384)
                      ..+..|++++|.|.... ....+.|+|++...............+.|.+++.+|+|.|+|...
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          13 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CcccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            34789999999998743 456799999876543322211233479999999999999999754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=6.4e-06  Score=55.33  Aligned_cols=67  Identities=22%  Similarity=0.356  Sum_probs=46.4

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------CceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      |..+.+.+|++++|.|.........+.||+........              .....    ....|.|.+++.+|+|.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            45677899999999999865555568999743211000              01110    1248999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |...+
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            97654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.11  E-value=1.4e-05  Score=52.47  Aligned_cols=85  Identities=18%  Similarity=0.339  Sum_probs=45.6

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++.. ...++..+|.|.+.|+.+.  .+.|.+||.++..+.... ....+++. .........+..++...|+
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~-~~~~~~dg-ty~~~s~l~v~~~~~~~yt   78 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVST-PLIRNGDW-TFQILVMLEMTPQRGDVYT   78 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC-CCEECSSS-CEEEEEEEECCSCTTCCEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEec-eeecCCCc-eEEEEEEeccCCCCCCEEE
Confidence            34444433222 2346677899999985443  899999998876542211 11111111 1222333445566778999


Q ss_pred             EEEEeCCcce
Q psy16652        351 CKAANKYGSA  360 (384)
Q Consensus       351 C~a~n~~g~~  360 (384)
                      |.+....-..
T Consensus        79 C~V~H~sl~~   88 (97)
T d1uvqb1          79 CHVEHPSLQS   88 (97)
T ss_dssp             EEEECTTCSS
T ss_pred             EEEEeCCCCC
Confidence            9999875444

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.11  E-value=6.6e-06  Score=55.83  Aligned_cols=70  Identities=17%  Similarity=0.310  Sum_probs=46.6

Q ss_pred             CcccccCCcEEEEEEEeccC--CCeEEEEECC-----EEec---------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        282 RQGQALQYDAILECHVEAYP--PPAIVWIKDG-----VQIM---------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      .+.+.+|++++|.|...+..  ...+.||+..     +.+.         ..+++....     ......|.|.+++.+|
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D   83 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK-----SGTSASLAISGLESED   83 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC-----CCCeeeeEecccCccc
Confidence            45678899999999987643  4479999832     1110         012222221     1235679999999999


Q ss_pred             CeEEEEEEEeC
Q psy16652        346 FGQYACKAANK  356 (384)
Q Consensus       346 ~G~Y~C~a~n~  356 (384)
                      ++.|.|.+...
T Consensus        84 sA~YyCA~~~~   94 (114)
T d2rhea_          84 EADYYCAAWND   94 (114)
T ss_dssp             CEEEEEEEEET
T ss_pred             CceEEEeecCC
Confidence            99999988653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.11  E-value=1.6e-05  Score=52.28  Aligned_cols=82  Identities=17%  Similarity=0.288  Sum_probs=48.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+.+.. .+..|+.++|.|.+.+.  +...|.|++++...... .  .........++.|....       .|.+
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~-~--~~t~~~~~~dgtf~~~s-------~l~v   70 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADG-V--YETSFFVNRDYSFHKLS-------YLTF   70 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSS-E--EECCCEECTTSCEEEEE-------EEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCC-c--eeeeeEECCCCCEEEEE-------EeEE
Confidence            35666665433 35678999999999884  46799999988663221 1  11111112223344333       3444


Q ss_pred             eecCCCCCeeEEEEEEEc
Q psy16652        149 KEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~  166 (384)
                         ..++.+.|+|++.+.
T Consensus        71 ---~~~~~~~ytC~V~H~   85 (100)
T d1muja1          71 ---IPSDDDIYDCKVEHW   85 (100)
T ss_dssp             ---CCCTTCCEEEEEECT
T ss_pred             ---cCCCCCEEEEEEEEC
Confidence               445667999999854

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.11  E-value=3.8e-06  Score=57.52  Aligned_cols=73  Identities=12%  Similarity=0.261  Sum_probs=47.0

Q ss_pred             CCCcccccCCcEEEEEEEecc-CCCeEEEEEC-----CEEe------cCC-----------CceeeeeeeccCccccceE
Q psy16652        280 RPRQGQALQYDAILECHVEAY-PPPAIVWIKD-----GVQI------MNN-----------QHYSVSHFATSDEFSDTSL  336 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~-----~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l  336 (384)
                      |....+.+|++++|.|.+.+. ....+.|++.     ++.+      ...           .++...   .........|
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L   81 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIIL---ESSDSRRPFL   81 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEE---ESTTSSSCEE
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEE---EeCCCCeEEE
Confidence            344567899999999998763 4457999973     2211      000           111111   1112235679


Q ss_pred             EEeecCCCCCeEEEEEEEe
Q psy16652        337 RVITIERRQFGQYACKAAN  355 (384)
Q Consensus       337 ~i~~~~~~d~G~Y~C~a~n  355 (384)
                      +|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.11  E-value=5.1e-06  Score=55.96  Aligned_cols=70  Identities=16%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CE---Eec---------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GV---QIM---------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.........+.||+.  +.   .+.         ...++...     .......|.|.+++.+|
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~-----~~~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS-----GSGTQFSLKINSLLPED   82 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEe-----ccCCEEEEEEccccccC
Confidence            3444567899999999987655567999982  11   111         01222211     11235679999999999


Q ss_pred             CeEEEEEEE
Q psy16652        346 FGQYACKAA  354 (384)
Q Consensus       346 ~G~Y~C~a~  354 (384)
                      +|.|.|.+.
T Consensus        83 Sa~YyCA~~   91 (109)
T d1mqkl_          83 FGSYYCQHH   91 (109)
T ss_dssp             CEEEEEEEC
T ss_pred             CeeEEEeee
Confidence            999999875

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.11  E-value=9.6e-06  Score=55.16  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe----cC-CCce---eeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI----MN-NQHY---SVSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~----~~-~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      |....+.+|+.++|.|.... ....+.||+.  +..+    .. ....   ...............|.|.+++.+|+|.|
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence            34455788999999999865 3457999982  2111    00 0000   00001111222345799999999999999


Q ss_pred             EEEEEeCCcc
Q psy16652        350 ACKAANKYGS  359 (384)
Q Consensus       350 ~C~a~n~~g~  359 (384)
                      .|.+....+.
T Consensus        87 yCa~~~~~~~   96 (113)
T d1h5ba_          87 FCAAEASSGS   96 (113)
T ss_dssp             EEEEECSSSS
T ss_pred             EEEecCCCCC
Confidence            9998765543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.10  E-value=3.1e-06  Score=57.50  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=47.6

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEec------C------CCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM------N------NQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.........+.||+.  |....      .      ..+.....   ........|.|.+++.+|
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF---NKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE---ETGGGEEEEEESSCCTTS
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEE---CCCCCeeEeEeccCCCCC
Confidence            4445678999999999987644457999983  21110      0      01111111   112234679999999999


Q ss_pred             CeEEEEEEEeC
Q psy16652        346 FGQYACKAANK  356 (384)
Q Consensus       346 ~G~Y~C~a~n~  356 (384)
                      +|.|.|.+.-.
T Consensus        83 sa~YyCa~~~~   93 (110)
T d1u3ha1          83 SATYFCAASAN   93 (110)
T ss_dssp             CSEEEECCEES
T ss_pred             ceeEeeeecCC
Confidence            99999998743

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.7e-06  Score=55.52  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=47.4

Q ss_pred             ccccCCcEEEEEEEeccCCC---eE--EEEECCEEec----C--------CCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        284 GQALQYDAILECHVEAYPPP---AI--VWIKDGVQIM----N--------NQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~---~v--~W~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      .+..|++++|.|.....+..   .+  .|.+++....    .        ..++......   ...+.+|.|.+++.+|+
T Consensus         5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~---~~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF---DSDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEE---ETTTTEEEECSCCGGGC
T ss_pred             EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEec---cCCeEEEEECCCChhHC
Confidence            46789999999998643322   23  3444332210    0        0111110000   12356799999999999


Q ss_pred             eEEEEEEEeCCcce-----EEEEEEEEe
Q psy16652        347 GQYACKAANKYGSA-----QKEIELFDR  369 (384)
Q Consensus       347 G~Y~C~a~n~~g~~-----~~~~~l~v~  369 (384)
                      |.|.|.+.......     ...+.|.|.
T Consensus        82 G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          82 GLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            99999997544332     334555553

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=5.3e-06  Score=56.33  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe---c---C------CCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI---M---N------NQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~---~---~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |+...+.+|++++|.|.........+.||+.  |..+   .   .      .+++....   ........|.|.+++.+|
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFL---NKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE---ETTTTEEEEEESSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEE---EccCCEEEEEECCCcccc
Confidence            3445578999999999987766667899982  2111   0   0      11222111   112246789999999999


Q ss_pred             CeEEEEEEEe
Q psy16652        346 FGQYACKAAN  355 (384)
Q Consensus       346 ~G~Y~C~a~n  355 (384)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.09  E-value=2.7e-05  Score=51.19  Aligned_cols=82  Identities=20%  Similarity=0.259  Sum_probs=47.7

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      +|.+.+.+.. ....++..+|.|.+.|+.+.  .|.|.+||.++..+.... ......+.....+.|.+   ..++...|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~y   80 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF---LPSADEIY   80 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE---cCCCCCEE
Confidence            4555443221 23457788999999996433  799999999886432111 11111122222233443   34555689


Q ss_pred             EEEEEeCCc
Q psy16652        350 ACKAANKYG  358 (384)
Q Consensus       350 ~C~a~n~~g  358 (384)
                      +|.+....-
T Consensus        81 tC~V~H~sl   89 (99)
T d1uvqa1          81 DCKVEHWGL   89 (99)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999998743

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=9.4e-06  Score=54.79  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=46.7

Q ss_pred             CceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------CceeE----eccEEEEcCCCCCCCeEEE
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSIY----RGNILKIPNITKTDRGTYY  251 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~~----~~~~l~i~~~~~~d~G~Y~  251 (384)
                      |..+.+.+|++++|.|...+.....+.||+......+.              .....    ....|.|.+++.+|+|.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            55677899999999999876555578999843211100              01110    1237999999999999999


Q ss_pred             EEEEe
Q psy16652        252 CVAQN  256 (384)
Q Consensus       252 C~~~~  256 (384)
                      |.+..
T Consensus        90 CA~~~   94 (109)
T d1bwwa_          90 CQQYQ   94 (109)
T ss_dssp             EEECS
T ss_pred             EeecC
Confidence            98754

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.07  E-value=1.9e-05  Score=51.56  Aligned_cols=69  Identities=12%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             CCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeee--eccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        288 QYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHF--ATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       288 g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ++.++|.|.+.|+ |.. .+.|.++|..+...........  ..+.....+.|.+.   .++...|+|.+......
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~~~   87 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSGNH   87 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETTEE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECCCC
Confidence            4678999999995 443 7999999998875543222211  11122222334433   34445799999987543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.6e-06  Score=56.95  Aligned_cols=73  Identities=11%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             CcccccCCcEEEEEEEeccC-------CCeEEEEECCEEecCC-----------------CceeeeeeeccCccccceEE
Q psy16652        282 RQGQALQYDAILECHVEAYP-------PPAIVWIKDGVQIMNN-----------------QHYSVSHFATSDEFSDTSLR  337 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p-------~~~v~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~  337 (384)
                      ...+.+|+.++|.|......       ...+.|++.+..-...                 +++.+..   .....+.+|.
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~   86 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLG---DPQTKNCTLS   86 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECS---CGGGTBCCEE
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEee---eCcCCEEEEE
Confidence            34578999999999985211       1257898854221110                 1222211   1122456899


Q ss_pred             EeecCCCCCeEEEEEEEeCC
Q psy16652        338 VITIERRQFGQYACKAANKY  357 (384)
Q Consensus       338 i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      |.+++.+|+|.|.|.+....
T Consensus        87 I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCChHHCEEEEEEEEeCC
Confidence            99999999999999997653

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5e-06  Score=55.20  Aligned_cols=88  Identities=16%  Similarity=0.212  Sum_probs=51.3

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+..+......++.++|.|.+.| +|.. .|.|.+++.......  .......+.....+.|+|..-... .|.|+
T Consensus         5 aP~V~~l~p~~~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~--~~~~~~~g~~s~~S~L~v~~~~w~-~~~yt   81 (101)
T d1kcvh2           5 APSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLT--VSAVLQSGLYTLSSNTTVASGTWP-SASVT   81 (101)
T ss_dssp             CCEEEEECCCSCCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE--CCCEEETTEEEEEEEEEEETTTTT-TSCCE
T ss_pred             CCEEEeECCCccccCCCeEEEEEEEEEEeCCCCEEEEecCCCccccee--eeeecCCCCEEEEEEEEEchhhcC-CCeEE
Confidence            454444333333345789999999998 4443 899988775421111  111112222233456777666654 57899


Q ss_pred             EEEEeCCcceEEE
Q psy16652        351 CKAANKYGSAQKE  363 (384)
Q Consensus       351 C~a~n~~g~~~~~  363 (384)
                      |.|.+........
T Consensus        82 C~V~H~~~~~~v~   94 (101)
T d1kcvh2          82 CLVAHPKSSTAAD   94 (101)
T ss_dssp             EEEEEGGGTEEEE
T ss_pred             EEEEeCCCCeeeE
Confidence            9999987655433

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.05  E-value=6.1e-06  Score=56.50  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             cCCCcccccCCcEEEEEEEec-cCCCeEEEEEC--CEEec--------C-----CCceeeeeeeccCccccceEEEeecC
Q psy16652        279 NRPRQGQALQYDAILECHVEA-YPPPAIVWIKD--GVQIM--------N-----NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~--~~~~~--------~-----~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+..+.+.+|++++|.|.... .....+.||+.  |..+.        .     ..++.+...   .......|+|.+++
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQ---KPKSSIGLIITATQ   81 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEE---GGGTEEEEEECSCC
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEe---ccCCEEEEEECCCC
Confidence            344556889999999998754 34456899982  11110        0     012222211   11234579999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy16652        343 RRQFGQYACKAANKYG  358 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g  358 (384)
                      .+|+|.|.|.+....+
T Consensus        82 ~~Dsa~YyCa~~~~~~   97 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDYG   97 (115)
T ss_dssp             GGGCEEEEEEEECCCT
T ss_pred             ccccccccceeecCCC
Confidence            9999999999875543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.05  E-value=7.5e-06  Score=55.65  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEEC--CEE---e---------cCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQ---I---------MNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      ....+.+|++++|.|.... ....+.||+.  ++.   +         .......-.............|+|.+++.+|+
T Consensus         7 ~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (112)
T d1kgce1           7 RYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDS   85 (112)
T ss_dssp             SEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGC
T ss_pred             CeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCC
Confidence            3345689999999998644 3457999982  111   0         00000000001111122346799999999999


Q ss_pred             eEEEEEEEe
Q psy16652        347 GQYACKAAN  355 (384)
Q Consensus       347 G~Y~C~a~n  355 (384)
                      |.|.|.+.-
T Consensus        86 a~YyCa~~~   94 (112)
T d1kgce1          86 AVYLCASSL   94 (112)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEeeeC
Confidence            999998753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.05  E-value=7.9e-06  Score=55.42  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=44.9

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------------cCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------------MNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      ....+.+|++++|.|...+ ....+.||+.  |..+            ...+.................|+|.+++.+|+
T Consensus         7 ~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   85 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDS   85 (111)
T ss_dssp             SEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCC
Confidence            3445788999999998654 3457999972  2111            00110000000111122346799999999999


Q ss_pred             eEEEEEEEeC
Q psy16652        347 GQYACKAANK  356 (384)
Q Consensus       347 G~Y~C~a~n~  356 (384)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (111)
T d2esve1          86 GVYFCASSQD   95 (111)
T ss_dssp             EEEEEEEESS
T ss_pred             ceEEEeeeCC
Confidence            9999987643

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.04  E-value=1e-05  Score=55.14  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------cC------CCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------MN------NQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|...+. ...+.||+.  |..+      ..      ..++.+.   .........|+|.+++.+|
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQ---FGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE---ECTTSSEEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccc---cccccceeeeeecCCCccc
Confidence            344567899999999998653 347999982  1110      00      1122211   1122345679999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16652        346 FGQYACKAANKYG  358 (384)
Q Consensus       346 ~G~Y~C~a~n~~g  358 (384)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (115)
T d1ogad1          83 TGLYLCAGAGSQG   95 (115)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             eeeEcccccCCCC
Confidence            9999998875543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=2e-05  Score=48.02  Aligned_cols=81  Identities=15%  Similarity=0.269  Sum_probs=56.2

Q ss_pred             CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccc----cCc--eeE------eccEEEEcCCCCCCCeEEEEEEEe
Q psy16652        190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALS----TGG--SIY------RGNILKIPNITKTDRGTYYCVAQN  256 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~----~~~--~~~------~~~~l~i~~~~~~d~G~Y~C~~~~  256 (384)
                      .+...+..|+.+.|.|.+.- ...|+++|.+-+...-.    ...  ...      .-..|.+..+-.+|.|.|+|.+.-
T Consensus        10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            45567889999999999854 45679999885543211    111  111      224788999999999999999987


Q ss_pred             CCCCceeeEEEEEE
Q psy16652        257 GVGRGMKRNIAVEV  270 (384)
Q Consensus       257 ~~~~~~~~~~~l~v  270 (384)
                      ..+-..+.++++.|
T Consensus        90 ~s~vieSHSvti~V  103 (104)
T d1xaua_          90 NSQVINSHSVTIHV  103 (104)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             ChhheecceEEEEe
Confidence            66655566666654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=3.8e-06  Score=55.90  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=47.4

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+..+......++.++|.|.+.|+ |.. .|.|..++....  ..........+.+...+.|+|..-... .+.|+
T Consensus         5 ~PsV~~l~p~~~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~--~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~yt   81 (102)
T d1mjuh2           5 APSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG--VHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSIT   81 (102)
T ss_dssp             CCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT--EEECCCEEETTEEEEEEEEEECTTTTT-TSCCE
T ss_pred             CCEEEEECCCccccCCCcEEEEEEEeeeeCCCeEEEECcCCccCC--eEecccccCCCCEEEEEEEEEehhHcC-CceEE
Confidence            4554433322223456789999999984 433 799977664321  111111122233333455666666653 56899


Q ss_pred             EEEEeCCcceEEEE
Q psy16652        351 CKAANKYGSAQKEI  364 (384)
Q Consensus       351 C~a~n~~g~~~~~~  364 (384)
                      |.|.+..+......
T Consensus        82 C~V~H~~~~~~v~~   95 (102)
T d1mjuh2          82 CNVAHPASSTKVDK   95 (102)
T ss_dssp             EEEEEGGGTEEEEE
T ss_pred             EEEEECCCCEEEEE
Confidence            99999876554433

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=4.7e-06  Score=58.05  Aligned_cols=87  Identities=16%  Similarity=0.265  Sum_probs=54.8

Q ss_pred             ecCeEEecCC-CcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeee------eeccCccccceEEEeecC
Q psy16652        272 FAPVITINRP-RQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSH------FATSDEFSDTSLRVITIE  342 (384)
Q Consensus       272 ~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~  342 (384)
                      .+|.+.+.++ ......+..++|.|.+.|+ |.. .|.|++||.++..........      ...+.+...+.|.|....
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            3676665433 3345567889999999984 433 799999999886442211111      111222234567777777


Q ss_pred             CCCCe-EEEEEEEeCCc
Q psy16652        343 RRQFG-QYACKAANKYG  358 (384)
Q Consensus       343 ~~d~G-~Y~C~a~n~~g  358 (384)
                      +++.| .|+|.|.....
T Consensus        83 W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             HTCTTCEEEEEEEECCB
T ss_pred             hCCCCCEEEEEEEECCC
Confidence            67756 69999998654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.00  E-value=2e-05  Score=51.86  Aligned_cols=77  Identities=9%  Similarity=0.025  Sum_probs=50.1

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+. ..+..|+.|+|.|.... +...+.|+++|.........  ..    .......+.|..+...|+|.|.|.
T Consensus         6 kPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~--~~----~~~~~~~f~~~~~~~~~~G~Y~C~   77 (99)
T d1nkra2           6 KPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPA--GP----KVNGTFQADFPLGPATHGGTYRCF   77 (99)
T ss_dssp             CCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEEC--EE----EETTEEEEEEEEEECCSCEEEEEE
T ss_pred             CCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccEEEc--cc----cCCccEEEEEeccccccCEEEEEE
Confidence            566666553 46788999999998754 45689999998533211100  00    001234567788888899999998


Q ss_pred             EEeCC
Q psy16652        353 AANKY  357 (384)
Q Consensus       353 a~n~~  357 (384)
                      .....
T Consensus        78 y~~~~   82 (99)
T d1nkra2          78 GSFHD   82 (99)
T ss_dssp             EEETT
T ss_pred             eecCC
Confidence            76543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.6e-06  Score=55.51  Aligned_cols=67  Identities=22%  Similarity=0.371  Sum_probs=44.6

Q ss_pred             ceEEeecCceEEEEEEecc--cCCCeEEEEeCCCcccc------------c-----CceeEe------ccEEEEcCCCCC
Q psy16652        191 RSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAALS------------T-----GGSIYR------GNILKIPNITKT  245 (384)
Q Consensus       191 ~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~------------~-----~~~~~~------~~~l~i~~~~~~  245 (384)
                      ....+.+|++++|.|...+  .....+.|+|.......            .     .+....      ...|+|.+++.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            3466789999999999753  34457889984321100            0     011111      136999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        246 DRGTYYCVAQNG  257 (384)
Q Consensus       246 d~G~Y~C~~~~~  257 (384)
                      |+|.|.|.+...
T Consensus        87 Dsg~Y~Cav~~~   98 (113)
T d1smoa_          87 DSGLYQCVIYQP   98 (113)
T ss_dssp             GCEEEEEEECCT
T ss_pred             cCceEEEEEECC
Confidence            999999998654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.2e-05  Score=53.70  Aligned_cols=88  Identities=14%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+-+.......++.++|.|.+.+. | ...|.|++++........  .........++.|....       .|.|
T Consensus         3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~--~~~~~~~~~~gtys~~S-------~L~v   73 (105)
T d1fp5a2           3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARH--STTQPRKTKGSGFFVFS-------RLEV   73 (105)
T ss_dssp             BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGE--EECCCEECSSSCEEEEE-------EEEE
T ss_pred             CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCcee--EeeeeEecCCCCEEEEE-------EEEE
Confidence            34555444333333457789999999873 3 679999998765322111  11111112334455444       5777


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-...+...|+|.+.+..
T Consensus        74 ~~~~W~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          74 TRAEWEQKDEFICRAVHEA   92 (105)
T ss_dssp             CHHHHTTGGGEEEEEECTT
T ss_pred             CHHHcCCCCEEEEEEEECC
Confidence            6655555568999998543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.00  E-value=1.1e-05  Score=54.63  Aligned_cols=74  Identities=14%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEE---ec---C------CCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQ---IM---N------NQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---~~---~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      +....+.+|+.++|.|.........+.||+.  |+.   +.   .      ..++....   ........|+|.+++.+|
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~---~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATY---NKEATSFHLQKASVQESD   83 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEC---BTTTTBCCEEEEEECGGG
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeee---cCCCCEEeeeecCcCcCC
Confidence            4445678999999999986655557999982  211   10   0      11111111   112235679999999999


Q ss_pred             CeEEEEEEEeC
Q psy16652        346 FGQYACKAANK  356 (384)
Q Consensus       346 ~G~Y~C~a~n~  356 (384)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (110)
T d1ac6a_          84 SAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcccceeecCC
Confidence            99999988754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=2.4e-05  Score=51.58  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+.+.. .+..|+.++|.|.+.+.  +...|+|.+++........    .......++.|....       .|.+
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~----~~~~~~~dgtf~~~s-------~l~v   70 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEM----SDMSFSKDWSFYILA-------HTEF   70 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE----EEEEECTTCCEEEEE-------EEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEE----CceeECCCCCEEEEE-------EeEe
Confidence            45666553322 24568889999999884  4668999998865321110    000111222332222       3443


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                         ..++.+.|+|++.+..
T Consensus        71 ---~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          71 ---TPTETDTYACRVKHDS   86 (99)
T ss_dssp             ---CCCSSCCEEEEEECTT
T ss_pred             ---cCcCCCEEEEEEEeCC
Confidence               4566679999997543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=54.43  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=46.0

Q ss_pred             CCceEEeecCceEEEEEEeccc-CCCeEEEEeCCCccccc--------------CceeE----eccEEEEcCCCCCCCeE
Q psy16652        189 STRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALST--------------GGSIY----RGNILKIPNITKTDRGT  249 (384)
Q Consensus       189 ~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~--------------~~~~~----~~~~l~i~~~~~~d~G~  249 (384)
                      .|..+.+.+|++++|.|..... ....+.|++....-.+.              .....    ....|.|.+++.+|+|.
T Consensus         7 ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~   86 (108)
T d2fx7l1           7 SPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAV   86 (108)
T ss_dssp             SSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             eCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEE
Confidence            3566789999999999997543 23468899853211100              00110    12379999999999999


Q ss_pred             EEEEEEe
Q psy16652        250 YYCVAQN  256 (384)
Q Consensus       250 Y~C~~~~  256 (384)
                      |.|.+.+
T Consensus        87 YyCa~~~   93 (108)
T d2fx7l1          87 YYCQQYG   93 (108)
T ss_dssp             EEEEECS
T ss_pred             EeeecCC
Confidence            9998753

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.98  E-value=3e-05  Score=52.31  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=46.0

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe---c---CCCceeee-----eeeccCccccceEEEeecCCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI---M---NNQHYSVS-----HFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~---~---~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      |....+.+|++++|.|...+ ....+.||+.  |+.+   .   ........     ............|+|.+++.+|+
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT   86 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence            34455789999999998765 3457999982  2111   0   00000000     00001112346799999999999


Q ss_pred             eEEEEEEEeC
Q psy16652        347 GQYACKAANK  356 (384)
Q Consensus       347 G~Y~C~a~n~  356 (384)
                      |.|.|.+...
T Consensus        87 a~YyCa~~~~   96 (110)
T d2aq2a1          87 SVYFCASGGG   96 (110)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEeeCCC
Confidence            9999987643

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.98  E-value=1.3e-05  Score=54.97  Aligned_cols=86  Identities=19%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             cCeEEecCCC-cc-cccCCcEEEEEEEecc-CC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        273 APVITINRPR-QG-QALQYDAILECHVEAY-PP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       273 ~p~~~~~~~~-~~-~~~g~~~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      .|.+.+.++. .. ...++.++|.|.+.|. |.   ..+.|.++|.++............++.+...+.|+|..-.+...
T Consensus        15 ~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g   94 (119)
T d1igtb3          15 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG   94 (119)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCC
Confidence            3455443333 22 3457889999999884 42   37899999998865543333333333333345566665555566


Q ss_pred             eEEEEEEEeCCc
Q psy16652        347 GQYACKAANKYG  358 (384)
Q Consensus       347 G~Y~C~a~n~~g  358 (384)
                      ..|+|.|.+..-
T Consensus        95 ~~ytC~V~H~~l  106 (119)
T d1igtb3          95 KEFKCKVNNKDL  106 (119)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CeEEEEEEECCC
Confidence            789999998653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=4.5e-05  Score=49.02  Aligned_cols=68  Identities=13%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        287 LQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      .++.++|.|.+.|+.+.  .|.|.++|+.+..+.... ......+.....+.|.+..   ++...|+|.+....
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            35689999999995444  789999999887554322 2223333333344455543   33447999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.97  E-value=1.2e-05  Score=53.74  Aligned_cols=69  Identities=13%  Similarity=0.244  Sum_probs=44.0

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECC--E---Eec-------C--CCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDG--V---QIM-------N--NQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~---~~~-------~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|++++|.|.... ....+.||+..  .   .+.       .  ..++...     .......|.|.+++.+|
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~-----~~~~~~~L~I~~~~~~D   80 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGS-----GSGTSYSLTISSMETED   80 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEe-----cCCCEEEEEecccCccc
Confidence            34455789999999998754 33468999832  1   010       0  1111111     11234679999999999


Q ss_pred             CeEEEEEEE
Q psy16652        346 FGQYACKAA  354 (384)
Q Consensus       346 ~G~Y~C~a~  354 (384)
                      +|.|.|.+.
T Consensus        81 sa~YyCa~~   89 (104)
T d1yqvl1          81 AATYYCQQW   89 (104)
T ss_dssp             CEEEEEEEC
T ss_pred             CCeEEEEec
Confidence            999999754

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.2e-06  Score=54.98  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             cccCCcEEEEEEEecc-CC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        285 QALQYDAILECHVEAY-PP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ...++.++|.|.+.|. |.   ..+.|.+++..+.............+.+...+.|.|..-.....-.|+|.|.+....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            4567899999999884 43   368899999988654332222222232233445555555555566899999987654

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=7.9e-06  Score=55.89  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=47.0

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECC-----EEec---------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDG-----VQIM---------NNQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      |....+.+|+.++|.|...+.-...+.||+..     ..+.         ...++....     ......|.|.+++.+|
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPED   82 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC-----CCCEEEEEcccCccCC
Confidence            34456789999999999876555579999831     1111         112222111     1134579999999999


Q ss_pred             CeEEEEEEEe
Q psy16652        346 FGQYACKAAN  355 (384)
Q Consensus       346 ~G~Y~C~a~n  355 (384)
                      +|.|.|.+..
T Consensus        83 savYyCa~~~   92 (119)
T d1f3rb2          83 VATYFCYQYN   92 (119)
T ss_dssp             CSEEEEEEES
T ss_pred             CeEEEeeccC
Confidence            9999998654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.96  E-value=2.7e-05  Score=52.56  Aligned_cols=67  Identities=22%  Similarity=0.323  Sum_probs=44.3

Q ss_pred             CceEEeecCceEEEEEEeccc-C---CCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF-P---APTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~-~---~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~  247 (384)
                      |..+.+.+|++++|.|..... .   ...+.||+......+              ..+...    ....|.|.+++.+|+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA   87 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence            556778999999999987431 1   224899984321100              011111    124799999999999


Q ss_pred             eEEEEEEEe
Q psy16652        248 GTYYCVAQN  256 (384)
Q Consensus       248 G~Y~C~~~~  256 (384)
                      +.|.|.+.+
T Consensus        88 A~YyCa~~~   96 (111)
T d2gsia1          88 ATYYCSHIR   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEECC
Confidence            999997654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=54.55  Aligned_cols=73  Identities=11%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             CCcccccCCcEEEEEEEecc---CCCeEEEEECC--EE---ec---------CCCceeeeeeeccCccccceEEEeecCC
Q psy16652        281 PRQGQALQYDAILECHVEAY---PPPAIVWIKDG--VQ---IM---------NNQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      ..+.+.+|++++|.|...+.   ....+.||+..  ..   +.         ..+++....     ......|.|.+++.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~   82 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK-----SGNSASLTISGLQA   82 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEECSCCG
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC-----CCCEeeEEeCcCcc
Confidence            34567889999999998653   22358999821  11   10         112222211     12356799999999


Q ss_pred             CCCeEEEEEEEeCCc
Q psy16652        344 RQFGQYACKAANKYG  358 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~g  358 (384)
                      +|+|.|.|.+.+..+
T Consensus        83 ~Dsa~YyCa~~~~~~   97 (112)
T d1lgva1          83 EDEADYYCSSYDGSS   97 (112)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             ccCEEEEEeeecCCC
Confidence            999999998765443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.95  E-value=1.4e-05  Score=54.71  Aligned_cols=71  Identities=15%  Similarity=0.276  Sum_probs=44.3

Q ss_pred             CcccccCCcEEEEEEEeccC--CCeEEEEEC--CE---Eec---C-C---------CceeeeeeeccCccccceEEEeec
Q psy16652        282 RQGQALQYDAILECHVEAYP--PPAIVWIKD--GV---QIM---N-N---------QHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~---~~~---~-~---------~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      .+...+|++++|.|.+.+..  ...+.||+.  |+   .+.   . .         +++.+.   .........|+|.++
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s---~~~~~~~~~L~I~~l   86 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEAS---KNPSASTSILTIYSL   86 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEE---ECCTTTEEEEEECSC
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccc---ccccccccccccccc
Confidence            34567899999999986532  346899982  11   110   0 1         111111   111223456999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy16652        342 ERRQFGQYACKAAN  355 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n  355 (384)
                      +.+|+|.|.|.+.-
T Consensus        87 ~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          87 EEEDEAIYYCSYGE  100 (120)
T ss_dssp             CGGGCSEEEEEECC
T ss_pred             ccccceeEEEEEcC
Confidence            99999999997654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.95  E-value=8e-06  Score=54.89  Aligned_cols=71  Identities=15%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEEC--CE---Eec---------CCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKD--GV---QIM---------NNQHYSVSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      .+.+.+|++++|.|.........+.|++.  |+   .+.         ...++...     .......|.|.+++.+|+|
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGS-----NSGNMATLTISRVEAGDEA   83 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE-----EETTEEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeee-----cCCCccceEEeeeccCCCE
Confidence            45678899999999976544457999972  11   110         01122111     1123557999999999999


Q ss_pred             EEEEEEEeCC
Q psy16652        348 QYACKAANKY  357 (384)
Q Consensus       348 ~Y~C~a~n~~  357 (384)
                      .|.|.+....
T Consensus        84 vYyCA~~~~~   93 (109)
T d1w72l1          84 DYYCQVWDSR   93 (109)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEecCCC
Confidence            9999887543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=1e-06  Score=58.05  Aligned_cols=74  Identities=14%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             cccccCCcEEEEEEEeccCCCeEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        283 QGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      +.+.+|++++|.|.... ....+.|++.  |+.+.            ...++.+..   ........|.|.+++.+|+|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL---DTSKKSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCC---BGGGTBCCBCCSSCCSTTCSC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeec---cCcceecccCcCCCCcccCEE
Confidence            45789999999998754 3347999982  22211            112222211   111234579999999999999


Q ss_pred             EEEEEEeCCcce
Q psy16652        349 YACKAANKYGSA  360 (384)
Q Consensus       349 Y~C~a~n~~g~~  360 (384)
                      |.|.+....|..
T Consensus        79 YyCA~~~~~g~~   90 (96)
T d1ymmd1          79 YFCATDTTSGTY   90 (96)
T ss_dssp             CEEEEEETTSCS
T ss_pred             EeEeEecCCCCc
Confidence            999988766643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.94  E-value=2.5e-05  Score=53.57  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             CCCcccccCCcEEEEEEEeccC--CCeEEEEEC--CEE---ec---------CCCceeeeeeeccCccccceEEEeecCC
Q psy16652        280 RPRQGQALQYDAILECHVEAYP--PPAIVWIKD--GVQ---IM---------NNQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      ++...+.+|++++|.|...+..  ...+.|++.  |+.   +.         ..+++.....   .......|.|.+++.
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~---~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID---IAKNLAVLKILAPSE   84 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE---GGGTEEEEEESSCCG
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecc---ccccceecccccccc
Confidence            3445578999999999997643  346999972  211   10         1123333221   111346799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy16652        344 RQFGQYACKAANK  356 (384)
Q Consensus       344 ~d~G~Y~C~a~n~  356 (384)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999986553

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=1.6e-05  Score=53.48  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=46.0

Q ss_pred             CcccccCCcEEEEEEEeccCCC---eEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        282 RQGQALQYDAILECHVEAYPPP---AIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      ...+.+|++++|.|...+....   .+.|++.  |+.+.            ..+++....     ......|.|.+++.+
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~-----~~~~~~L~I~~~~~~   83 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-----IGNKAALTITGAQTE   83 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEEESCCGG
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc-----cccceeeecCCCCcc
Confidence            3457899999999999753332   3889971  21110            112332221     123567999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (110)
T d1oaql_          84 DEAIYFCALWYS   95 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccEeEEEEcccC
Confidence            999999987653

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=9.6e-05  Score=44.43  Aligned_cols=58  Identities=22%  Similarity=0.468  Sum_probs=40.9

Q ss_pred             ccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652        286 ALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN  355 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  355 (384)
                      ..|..+.|+|.....+.+  .-.|.++|+.+..+....          ....+.|..  .+++|.|.|...+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~----------~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG----------QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC----------SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC----------CceEEEEec--CCCCceEEEEEcC
Confidence            456788899999764443  589999999998654211          233455553  6789999999653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.93  E-value=1.4e-05  Score=54.08  Aligned_cols=73  Identities=11%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCcccccCCcEEEEEEEeccCC--CeEEEEEC--CEEe------------cCCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        281 PRQGQALQYDAILECHVEAYPP--PAIVWIKD--GVQI------------MNNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +.+.+.+|++++|.|...+...  ..+.|++.  ++.+            ...+++.....   .......|.|.+++.+
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSID---RSSNSASLTISGLKTE   84 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE---TTTTEEEEEECSCCGG
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeec---CCCCccccccccCCcc
Confidence            3456789999999999876432  35899983  2111            01123322221   1123567999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+.+.
T Consensus        85 Dsa~YyCA~~~~   96 (111)
T d1cd0a_          85 DEADYYCQSYDA   96 (111)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cCcEEEEeeccC
Confidence            999999987654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.93  E-value=1.2e-05  Score=54.35  Aligned_cols=67  Identities=24%  Similarity=0.298  Sum_probs=44.4

Q ss_pred             CceEEeecCceEEEEEEeccc----CCCeEEEEeCCCccccc--------------CceeE----eccEEEEcCCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF----PAPTISWRRDNSAALST--------------GGSIY----RGNILKIPNITKTDR  247 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~~~~~~~~--------------~~~~~----~~~~l~i~~~~~~d~  247 (384)
                      |..+.+.+|++++|.|.....    ....+.|++....-.+.              .....    ....|.|.+++.+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            556778899999999987431    22349999843211000              00001    234899999999999


Q ss_pred             eEEEEEEEe
Q psy16652        248 GTYYCVAQN  256 (384)
Q Consensus       248 G~Y~C~~~~  256 (384)
                      |.|.|.+.+
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999998764

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=8.1e-06  Score=54.47  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             cCCCcccccCCcEEEEEEEecc-CC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652        279 NRPRQGQALQYDAILECHVEAY-PP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA  354 (384)
Q Consensus       279 ~~~~~~~~~g~~~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  354 (384)
                      +|....+..++.++|.|.+.|. |.   ..+.|.+++................+.....+.|.|..-.......|+|.|.
T Consensus         7 pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~   86 (103)
T d1fp5a1           7 RPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVT   86 (103)
T ss_dssp             CCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence            3444446668889999999984 43   2678888887665443222222222222223445555544555678999999


Q ss_pred             eCCc
Q psy16652        355 NKYG  358 (384)
Q Consensus       355 n~~g  358 (384)
                      +..-
T Consensus        87 H~~l   90 (103)
T d1fp5a1          87 HPHL   90 (103)
T ss_dssp             CSSC
T ss_pred             ECCC
Confidence            8754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.5e-06  Score=54.31  Aligned_cols=76  Identities=9%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+. ..+..|+.++|.|... .+...|.++++|..........      ........+.|.+++.+|+|.|.|.
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~------~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP------QELVKKGQFPIPSITWEHTGRYRCY   75 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC------HHHHTTTEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc------CCCCCEEEEEEEecCHHHCCeEEEE
Confidence            466665554 4578999999999974 3455788899875321000000      0011356799999999999999998


Q ss_pred             EEeC
Q psy16652        353 AANK  356 (384)
Q Consensus       353 a~n~  356 (384)
                      ....
T Consensus        76 y~~~   79 (96)
T d1ugna1          76 YGSD   79 (96)
T ss_dssp             EEET
T ss_pred             EeCC
Confidence            7643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.3e-05  Score=51.62  Aligned_cols=81  Identities=23%  Similarity=0.212  Sum_probs=47.2

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+-+.. .+..|+.++|.|.+.+.  +...++|.+++........    .......++.|....       .|. 
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~----~~~~~~~dgty~~~s-------~l~-   70 (100)
T d1k5nb_           4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH----SDLSFSKDWSFYLLY-------YTE-   70 (100)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE----CCCEECTTSCEEEEE-------EEE-
T ss_pred             CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccc----cceecCCCCcEEEEE-------EeE-
Confidence            45666554222 34678999999999884  4668999998765321110    011111222333322       343 


Q ss_pred             eecCCCCCeeEEEEEEEc
Q psy16652        149 KEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~  166 (384)
                        +..+|.+.|+|++.+.
T Consensus        71 --v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          71 --FTPTEKDEYACRVNHV   86 (100)
T ss_dssp             --ECCCSSCCEEEEEECT
T ss_pred             --ECCCCCCEEEEEEEeC
Confidence              3456777999999854

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.92  E-value=1.4e-05  Score=54.08  Aligned_cols=71  Identities=14%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             CCcccccCCcEEEEEEEeccC--CCeEEEEEC--C---EEec---------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652        281 PRQGQALQYDAILECHVEAYP--PPAIVWIKD--G---VQIM---------NNQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +...+.+|++++|.|...+..  ...+.||+.  +   +.+.         ..+++....     ......|+|.+++.+
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~~~~~   82 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK-----SGTSATLGITGLQTG   82 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC-----CCCEeeeEEeeeccc
Confidence            346678999999999986532  336999972  1   1110         112222211     123467999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (111)
T d1rzfl1          83 DEADYYCGTWDS   94 (111)
T ss_dssp             GCSEEEEEEEET
T ss_pred             cCcceEEeecCC
Confidence            999999987654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.89  E-value=1.7e-05  Score=53.65  Aligned_cols=69  Identities=16%  Similarity=0.289  Sum_probs=43.9

Q ss_pred             CCCcccccCCcEEEEEEEecc-----CCCeEEEEECC--EE---e-c------C--CCceeeeeeeccCccccceEEEee
Q psy16652        280 RPRQGQALQYDAILECHVEAY-----PPPAIVWIKDG--VQ---I-M------N--NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~--~~---~-~------~--~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      |+.+.+.+|++++|.|...+.     ....+.|++..  ..   + .      .  ..++...     .......|.|.+
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~-----~s~~~~~L~Is~   82 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS-----GSGTAFTLRISR   82 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----ECSSEEEEEESS
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee-----cCCCEEEEEECC
Confidence            344557889999999998653     23368998722  11   1 0      0  1122111     112346799999


Q ss_pred             cCCCCCeEEEEEE
Q psy16652        341 IERRQFGQYACKA  353 (384)
Q Consensus       341 ~~~~d~G~Y~C~a  353 (384)
                      ++.+|++.|.|..
T Consensus        83 ~~~~DsAvYyCa~   95 (112)
T d1mjul1          83 VEAEDVGVYYCLQ   95 (112)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccccCCceEEEEe
Confidence            9999999999954

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.8e-05  Score=49.53  Aligned_cols=80  Identities=16%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+...   ...|+.++|.|.+.+. | ...|.|.+++........              .....+.++.-.....
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~--------------~~~~~~~~~t~~~~s~   64 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELR--------------GDVLHNGNGTYQSWVV   64 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEE--------------EEEEETTTTEEEEEEE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEE--------------eeeecCCCCeEEEEEE
Confidence            3566655322   2357899999999884 4 578999998765321100              0011111111122333


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..+...|...|+|++.+..
T Consensus        65 l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          65 VAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             EEECTTCCSCEEEEEEETT
T ss_pred             eEeCCCCCCEEEEEEEECC
Confidence            3445666679999998654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.88  E-value=3.9e-05  Score=51.75  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=43.6

Q ss_pred             CceEEeecCceEEEEEEeccc-----CCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF-----PAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTD  246 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d  246 (384)
                      |..+.+.+|++++|.|.+.+.     ...-+.|++.......              ......    ....|.|.+++.+|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            566778999999999986432     1235889974321110              011111    12379999999999


Q ss_pred             CeEEEEEEE
Q psy16652        247 RGTYYCVAQ  255 (384)
Q Consensus       247 ~G~Y~C~~~  255 (384)
                      ++.|.|...
T Consensus        88 sAvYYC~~~   96 (112)
T d1ncwl1          88 LGVYYCWQG   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CEeEEEEcC
Confidence            999999553

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=2.4e-05  Score=53.67  Aligned_cols=74  Identities=9%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             CCcccccCCcEEEEEEEec---cCC---CeEEEEECCE----Ee-cC----------CCceeeeeeeccCccccceEEEe
Q psy16652        281 PRQGQALQYDAILECHVEA---YPP---PAIVWIKDGV----QI-MN----------NQHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~---~p~---~~v~W~~~~~----~~-~~----------~~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      ..+.+.+|+.++|.|.+..   .+.   ..+.|++.+.    .+ ..          ..++.+..  . ....+.+|+|.
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~sL~I~   84 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMG--N-MDHKVCNLLLK   84 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECS--C-GGGTBCCEEEC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEE--e-CcCCEEEEEEC
Confidence            3456789999999999853   111   1466776321    11 00          11222211  1 12246679999


Q ss_pred             ecCCCCCeEEEEEEEeCC
Q psy16652        340 TIERRQFGQYACKAANKY  357 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n~~  357 (384)
                      +++.+|+|.|.|.+....
T Consensus        85 ~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             SCCGGGCEEEEEEEECC-
T ss_pred             CCChhHCEEEEEEEEeCC
Confidence            999999999999997654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.87  E-value=2.3e-05  Score=53.29  Aligned_cols=75  Identities=13%  Similarity=0.221  Sum_probs=45.0

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEec------CCCcee-----eeeeeccCccccceEEEeecCCCCCe
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM------NNQHYS-----VSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      ....+.+|++++|.|.... ....+.||+.  |..+.      ......     ..............|+|.+++.+|+|
T Consensus         8 ~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   86 (113)
T d1j8he1           8 RYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTS   86 (113)
T ss_dssp             SEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcc
Confidence            3345678999999998643 3457899982  21110      000000     00001111223467999999999999


Q ss_pred             EEEEEEEeC
Q psy16652        348 QYACKAANK  356 (384)
Q Consensus       348 ~Y~C~a~n~  356 (384)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (113)
T d1j8he1          87 MYLCASSST   95 (113)
T ss_dssp             EEEEEEECT
T ss_pred             cEEeeEccC
Confidence            999988754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.5e-05  Score=51.87  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=49.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+-+.......++.++|.|.+.+. | ...|.|++++.......   .........++.|....       .|.|
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~---~t~~~~~~~dgtys~~S-------~L~v   73 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM---ETTQPSKQSNNKYMASS-------YLTL   73 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE---EECCCEECTTSCEEEEE-------EEEE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCe---EecccEEcCCCCEEEEE-------EEEE
Confidence            45666554433322346689999999884 3 56899999876422111   00111112234454444       5777


Q ss_pred             eecCCCCCeeEEEEEEEc
Q psy16652        149 KEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~  166 (384)
                      ..-.......|+|++.+.
T Consensus        74 ~~~~w~~~~~ytC~V~H~   91 (102)
T d1q0xl2          74 TARAWERHSSYSCQVTHE   91 (102)
T ss_dssp             EHHHHTTCCEEEEEEEET
T ss_pred             CHHHhCCCCEEEEEEEEC
Confidence            655555566999999854

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.86  E-value=1.7e-05  Score=53.75  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=46.2

Q ss_pred             CCcccccCCcEEEEEEEeccC-CCeEEEEEC--CEEec----------CCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652        281 PRQGQALQYDAILECHVEAYP-PPAIVWIKD--GVQIM----------NNQHYSVSHFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      ....+.+|++++|.|...+.. ...+.||+.  |..+.          ......+   ..........|+|..++.+|+|
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASL---AIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEE---EECTTSSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccce---eecccCCeeEEEEeecccccce
Confidence            345578899999999986543 346999982  21111          0011111   1112223567999999999999


Q ss_pred             EEEEEEEeC
Q psy16652        348 QYACKAANK  356 (384)
Q Consensus       348 ~Y~C~a~n~  356 (384)
                      .|.|.+...
T Consensus        83 ~YyCa~~~~   91 (112)
T d1kgcd1          83 VYYCILPLA   91 (112)
T ss_dssp             EEEEECCCC
T ss_pred             eEeeeEecC
Confidence            999987543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.85  E-value=1.5e-05  Score=54.23  Aligned_cols=75  Identities=12%  Similarity=0.239  Sum_probs=45.5

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------cCCCceeee-----eeeccCccccceEEEeecCCCCCe
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------MNNQHYSVS-----HFATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      ....+.+|++++|.|.... ....+.||+.  |+.+      .........     ............|+|.+++.+|+|
T Consensus         7 ~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa   85 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA   85 (114)
T ss_dssp             SEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred             CeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCce
Confidence            3356789999999999853 4457999982  2111      000000000     001111123457999999999999


Q ss_pred             EEEEEEEeC
Q psy16652        348 QYACKAANK  356 (384)
Q Consensus       348 ~Y~C~a~n~  356 (384)
                      .|.|.+...
T Consensus        86 ~YyCa~~~~   94 (114)
T d1ogae1          86 FYLCASSSR   94 (114)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeccC
Confidence            999976643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.85  E-value=6.4e-05  Score=48.94  Aligned_cols=78  Identities=13%  Similarity=0.201  Sum_probs=50.6

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+ ...+..|+.++|.|.... ....+.++++|.........  ..  .........+.|..++..|+|.|.|.
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~--~~--~~~~~~~a~F~l~~v~~~~~G~Y~C~   75 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLI--GE--HHDGVSKANFSISRMTQDLAGTYRCY   75 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEE--CE--EETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeee--ee--ecCCceEEEEEEcccCcccCeEEEEE
Confidence            45665544 456788999999999754 45588999987422111000  00  00111345689999999999999998


Q ss_pred             EEeC
Q psy16652        353 AANK  356 (384)
Q Consensus       353 a~n~  356 (384)
                      -...
T Consensus        76 y~~~   79 (96)
T d1nkra1          76 GSVT   79 (96)
T ss_dssp             EEBT
T ss_pred             EEcC
Confidence            7644

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.5e-05  Score=51.04  Aligned_cols=68  Identities=15%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             CCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeee-eeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        288 QYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSH-FATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      +..++|.|.+.|+.+.  .|+|.+||..+.......... ...+.....+.|.+   ..++...|+|.+....-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECcC
Confidence            4678999999995544  789999999887543222111 11111222223333   34455689999998653

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=1.3e-05  Score=53.41  Aligned_cols=73  Identities=15%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             cccCCcEEEEEEEecc-CC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        285 QALQYDAILECHVEAY-PP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      ...+..++|.|.+.++ |.   ..+.|.++|..+.............+.....+.|+|..-.+...-.|+|.|.+..
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            3456778999999884 43   3789999998876543222222222222223445555544455557999999865

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.83  E-value=2.4e-05  Score=53.04  Aligned_cols=71  Identities=13%  Similarity=0.276  Sum_probs=44.4

Q ss_pred             CCCcccccCCcEEEEEEEecc---C---CCeEEEEEC--CEEe------------cCCCceeeeeeeccCccccceEEEe
Q psy16652        280 RPRQGQALQYDAILECHVEAY---P---PPAIVWIKD--GVQI------------MNNQHYSVSHFATSDEFSDTSLRVI  339 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~---p---~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~  339 (384)
                      |....+.+|++++|.|...+.   .   ...+.||+.  |..+            ...+++...     .......|.|.
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~-----~s~~~~~L~I~   82 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS-----GSGTDFTLTIT   82 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe-----CCCCeEeEEec
Confidence            344557899999999987542   1   124899983  2111            011222211     11234579999


Q ss_pred             ecCCCCCeEEEEEEEe
Q psy16652        340 TIERRQFGQYACKAAN  355 (384)
Q Consensus       340 ~~~~~d~G~Y~C~a~n  355 (384)
                      +++.+|+|.|.|.+.+
T Consensus        83 ~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCCCeEEEecccC
Confidence            9999999999998653

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.82  E-value=2.7e-05  Score=52.71  Aligned_cols=71  Identities=17%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             CCCcccccCCcEEEEEEEecc-----CCCeEEEEECC--E---Ee---------cCCCceeeeeeeccCccccceEEEee
Q psy16652        280 RPRQGQALQYDAILECHVEAY-----PPPAIVWIKDG--V---QI---------MNNQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      |....+.+|++++|.|...+.     ....+.||+..  +   .+         ...+++....     ......|+|.+
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~   83 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISR   83 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----CSSEEEEEESS
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec-----cCCcccCccCC
Confidence            344567899999999998542     22469999821  1   11         0112222211     12346899999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy16652        341 IERRQFGQYACKAAN  355 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n  355 (384)
                      ++.+|+|.|.|...+
T Consensus        84 ~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCcccCEEEEEEECC
Confidence            999999999996543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=1.3e-05  Score=54.44  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=44.8

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEEC--CEEe------cCCCceee-----eeeeccCccccceEEEeecCCCCCeE
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKD--GVQI------MNNQHYSV-----SHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      ...+.+|++++|.|.... ....+.||+.  |+.+      ........     .............|+|.++..+|+|.
T Consensus         8 ~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav   86 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV   86 (112)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence            345788999999998754 3457999982  2111      00000000     00011112234579999999999999


Q ss_pred             EEEEEEeC
Q psy16652        349 YACKAANK  356 (384)
Q Consensus       349 Y~C~a~n~  356 (384)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (112)
T d2bnub1          87 YFCASSYV   94 (112)
T ss_dssp             EEEEEECS
T ss_pred             EEEeecCC
Confidence            99987643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.79  E-value=4.9e-05  Score=52.23  Aligned_cols=70  Identities=21%  Similarity=0.478  Sum_probs=44.9

Q ss_pred             cccccCCcEEEEEEEeccC--CCeEEEEEC--CEE---e----------cC----CCceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYP--PPAIVWIKD--GVQ---I----------MN----NQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~---~----------~~----~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ....+|++++|.|.++|..  ...+.|++.  |+.   +          ..    ..++.+...   .......|.|.++
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~i~~l   87 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI---PETSTSTLTIHNV   87 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE---TTTTEEEEEECSC
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeee---ccccceeeccccc
Confidence            4567799999999998753  336899982  111   1          00    112322211   1112456999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy16652        342 ERRQFGQYACKAAN  355 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n  355 (384)
                      +.+|+|.|.|.+..
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999998754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.79  E-value=1.7e-05  Score=53.26  Aligned_cols=71  Identities=11%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             CCcccccCCcEEEEEEEeccCCCeEEEEEC--CEE---ec---------CCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652        281 PRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQ---IM---------NNQHYSVSHFATSDEFSDTSLRVITIERRQF  346 (384)
Q Consensus       281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  346 (384)
                      +...+.+|++++|.|.........+.|++.  |..   +.         ..+++....     ......|.|.+++.+|+
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~-----~~~~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-----SGTTATLTISGAQPEDE   81 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGGC
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC-----CCCEeeeeEcCccccCC
Confidence            345567899999999885444446899982  211   11         012222211     11346799999999999


Q ss_pred             eEEEEEEEeC
Q psy16652        347 GQYACKAANK  356 (384)
Q Consensus       347 G~Y~C~a~n~  356 (384)
                      |.|.|.+...
T Consensus        82 a~YyCA~~~~   91 (108)
T d1nfde1          82 AAYYCLSSYG   91 (108)
T ss_dssp             SEEEEEEEET
T ss_pred             ceEEEEeecC
Confidence            9999987644

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=5.7e-05  Score=50.58  Aligned_cols=72  Identities=10%  Similarity=0.239  Sum_probs=46.6

Q ss_pred             ccccCCcEEEEEEEecc--CCCeEEEEEC--CE----EecCC-----------CceeeeeeeccCccccceEEEeecCCC
Q psy16652        284 GQALQYDAILECHVEAY--PPPAIVWIKD--GV----QIMNN-----------QHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~--p~~~v~W~~~--~~----~~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      .+.+|++++|.|..++.  ....+.|++.  |+    .+..+           +++.+..   ........|+|.+++.+
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~---d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKH---DPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEE---EGGGTEEEEEECSCCGG
T ss_pred             cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEE---ECCCCEEEEEECccccC
Confidence            46789999999998763  4457899983  22    11111           1222221   11123456899999999


Q ss_pred             CCeEEEEEEEeCCc
Q psy16652        345 QFGQYACKAANKYG  358 (384)
Q Consensus       345 d~G~Y~C~a~n~~g  358 (384)
                      |+|.|.|.......
T Consensus        83 Dsa~YyCa~~~~~~   96 (110)
T d1u9ka_          83 DSGLYRCVIYHPPN   96 (110)
T ss_dssp             GCEEEEEEEECTTS
T ss_pred             CCEEEEEEEeCCCC
Confidence            99999998865443

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=2e-05  Score=53.59  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=45.0

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEE--CCEEecC---------------CCceeeeeeeccCccccceEEEeecCCC
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIK--DGVQIMN---------------NQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      ...+.+|++++|.|...+ ....+.||+  .|+.+..               ..++..    .........|+|.+++.+
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSG----RQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEE----EECTTSCEEEEECSCCGG
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceee----ccCcCCeeEEEECCCCcc
Confidence            345688999999999754 335799998  2222110               011111    111123467999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999988754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.5e-05  Score=50.16  Aligned_cols=86  Identities=16%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      ..|.+.+.+....-..++.++|.|.+.+. | ...++|.+++......    .........++.|....       .|.|
T Consensus         3 ~~P~V~i~~ps~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~----~~~~~~~~~dgtys~~S-------~L~v   71 (102)
T d1l6xa2           3 REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY----KTTPPVLDSDGSFFLYS-------KLTV   71 (102)
T ss_dssp             BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE----EECCCEECTTSCEEEEE-------EEEE
T ss_pred             cCCEEEEECcCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCe----EEcceEECCCCCEEEEE-------EEEE
Confidence            34555443333222357789999999884 3 6799999987642211    00111112334444433       5777


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-.......|+|++.+..
T Consensus        72 ~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          72 DKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EHHHHHTTCCEEEEEECTT
T ss_pred             CHHHcCCCCEEEEEEEeCC
Confidence            6554444448999998644

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.76  E-value=0.00011  Score=47.96  Aligned_cols=81  Identities=15%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+.+.. .+..++.++|.|.+.+.  +...|+|.+++........   ........++.|....       .|.+ 
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~---~~~~~~~~dgty~~~s-------~L~v-   70 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSA---HKTAQPNGDWTYQTLS-------HLAL-   70 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCS---BCCCEECSSSCEEEEE-------EEEE-
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeE---eCceEECCCCCEEEEE-------EeEc-
Confidence            4566554322 24567899999999884  4779999998865321110   0011111233444333       3554 


Q ss_pred             ecCCCCCeeEEEEEEEc
Q psy16652        150 EIQETDAGIYKCEVIIS  166 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~  166 (384)
                        ..++...|+|.+.+.
T Consensus        71 --~~~~~~~ytC~V~H~   85 (98)
T d1hdmb1          71 --TPSYGDTYTCVVEHI   85 (98)
T ss_dssp             --CCCTTCCEEEEEECT
T ss_pred             --CCCCCCEEEEEEEeC
Confidence              455566899999854

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.4e-05  Score=52.00  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+-+....-..++.++|.|.+.+.  ....|.|.+++........   ........++.|....       .|.|
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~---~~~~~~~~dgtys~~S-------~L~v   73 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE---TTTPSKQSNNKYAASS-------YLSL   73 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEE---ECCCEECTTSCEEEEE-------EEEE
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEE---eCCcEECCCCEEEEEE-------EEEE
Confidence            45666654433333357789999999883  3668999998765321110   0111112334455444       5666


Q ss_pred             eecCCCCCeeEEEEEEEc
Q psy16652        149 KEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~  166 (384)
                      ..........|+|.+.+.
T Consensus        74 ~~~~w~~~~~ytC~V~H~   91 (102)
T d1rzfl2          74 TPEQWKSHRSYSCQVTHE   91 (102)
T ss_dssp             CHHHHHHSSCEEEEEEET
T ss_pred             CHHHhCCCCEEEEEEEEC
Confidence            554443445899999864

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00018  Score=46.71  Aligned_cols=69  Identities=10%  Similarity=0.160  Sum_probs=41.7

Q ss_pred             eccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652         85 DIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV  163 (384)
Q Consensus        85 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  163 (384)
                      ..|+.++|.|.+.+ .|.+.|.|++++............    ...++.|.+..       .|.+.   ..+...|+|.+
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~----~~~~g~y~v~S-------~L~v~---~~~~~~~tC~V   79 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ----DPETELYAVSS-------KLDFN---MTTNHSFMCLI   79 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE----CTTTCCEEEEE-------EEEEE---TTSCEEEEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEe----cCCCccEEEEE-------EEEcc---CCccceEEEEE
Confidence            35778999999987 577799999977653211111100    01123344433       45553   44567999999


Q ss_pred             EEcc
Q psy16652        164 IISL  167 (384)
Q Consensus       164 ~~~~  167 (384)
                      .+..
T Consensus        80 ~h~~   83 (95)
T d1dr9a2          80 KYGH   83 (95)
T ss_dssp             EETT
T ss_pred             EecC
Confidence            8654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=9e-05  Score=50.56  Aligned_cols=71  Identities=13%  Similarity=0.073  Sum_probs=43.7

Q ss_pred             cccccCCcEEEEEEEeccCCC---eEEEEEC--CEEec------C-C------CceeeeeeeccCccccceEEEeecCCC
Q psy16652        283 QGQALQYDAILECHVEAYPPP---AIVWIKD--GVQIM------N-N------QHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~---~v~W~~~--~~~~~------~-~------~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +.+..|+.++|.|.......+   .+.|++.  |+.+.      . .      ++.....   ........|.|.+++.+
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSG---TFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEE---EEETTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEE---eCCCCEEEEEhhcCccc
Confidence            456789999999998643333   4789983  22110      0 0      1111100   01113467999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |+|.|.|.+...
T Consensus        86 Dsa~YyCa~~~~   97 (117)
T d1dqta_          86 DTGLYLCKVELM   97 (117)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             cCEeEEEEEecC
Confidence            999999988643

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.74  E-value=0.00013  Score=47.97  Aligned_cols=82  Identities=18%  Similarity=0.248  Sum_probs=47.0

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+.+... +..|+.++|.|.+.+.  ....|+|++++.......   .........++.|....       .|.+
T Consensus         4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~---~~~~~~~~~dgty~~~S-------~L~v   72 (101)
T d1fnga1           4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGV---SETVFLPRDDHLFRKFH-------YLTF   72 (101)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSE---EECCCEECSSSCEEEEE-------EEEE
T ss_pred             cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCc---EeCeEEECCCCcEEEEE-------EeEE
Confidence            456666543222 4567889999999884  467899999876432110   01111111233444333       4555


Q ss_pred             eecCCCCCeeEEEEEEEc
Q psy16652        149 KEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~  166 (384)
                      .   ..+...|+|++.+.
T Consensus        73 ~---~~~~~~ytC~V~H~   87 (101)
T d1fnga1          73 L---PSTDDFYDCEVDHW   87 (101)
T ss_dssp             C---CCTTCCEEEEEECT
T ss_pred             c---CCCCCEEEEEEEEC
Confidence            3   34556899999854

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.3e-05  Score=52.13  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA  350 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  350 (384)
                      +|.+.+.++......+..++|.|.+.++ |.. .|.|..++.... ..........++.....+.|+|..-... ...|+
T Consensus         5 ~PsV~~l~ps~~~~~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~-~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~yt   82 (103)
T d1c5ch2           5 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG-VHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYI   82 (103)
T ss_dssp             CCEEEEECCCGGGEETTEEEEEEEEEEEBSSCCEEEEGGGTBCTT-EEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCE
T ss_pred             CCEEEEECCCchhcCCCeEEEEEEEEeEeCCCeEEEECcCCCCCC-EEECCCeECCCCCEEEEEEEEECccccC-CCeEE
Confidence            4554443333223356789999999884 433 799977764321 0111111112222223355666655543 45799


Q ss_pred             EEEEeCCcceEE
Q psy16652        351 CKAANKYGSAQK  362 (384)
Q Consensus       351 C~a~n~~g~~~~  362 (384)
                      |.+.+..+....
T Consensus        83 C~V~H~~~~~~v   94 (103)
T d1c5ch2          83 CNVNHKPSNTKV   94 (103)
T ss_dssp             EEEEEGGGTEEE
T ss_pred             EEEEeCCCCEEE
Confidence            999998776543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=9.6e-05  Score=47.59  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+....   ..++.++|.|.+.+.  ....|+|.+++........     ......++.|....       .|.+.
T Consensus         3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~-----~~~~~~dgty~~~S-------~l~v~   67 (91)
T d3frua1           3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNC-----STGPNGDGSFHAWS-------LLEVK   67 (91)
T ss_dssp             CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEE-----EEEECSSSCEEEEE-------EEEEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCc-----cceecCCCCEeEEE-------EEEEC
Confidence            4555553221   245689999999884  4679999998865321110     01111233443333       45553


Q ss_pred             ecCCCCCeeEEEEEEEc
Q psy16652        150 EIQETDAGIYKCEVIIS  166 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~  166 (384)
                         ..|...|+|++.+.
T Consensus        68 ---~~~~~~ytC~V~H~   81 (91)
T d3frua1          68 ---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             ---TTCGGGEEEEEECT
T ss_pred             ---CCCCCEEEEEEEeC
Confidence               45566899999754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.72  E-value=0.00016  Score=48.74  Aligned_cols=77  Identities=16%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEec------CCCceeeee----eeccCccccceEEEeecCCCCCe
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIM------NNQHYSVSH----FATSDEFSDTSLRVITIERRQFG  347 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G  347 (384)
                      |....+.+|++++|.|.........+.||+.  |+.+.      .........    ...........|.|...+.+|++
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa   87 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCE
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCc
Confidence            3444578899999999987655568999983  22110      000000000    00001123467889999999999


Q ss_pred             EEEEEEEeC
Q psy16652        348 QYACKAANK  356 (384)
Q Consensus       348 ~Y~C~a~n~  356 (384)
                      .|.|.+...
T Consensus        88 ~Y~Ca~~~~   96 (112)
T d1fo0b_          88 TLYCTCSAD   96 (112)
T ss_dssp             EEEEEEESS
T ss_pred             cEEEEEecC
Confidence            999997644

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00011  Score=48.52  Aligned_cols=85  Identities=13%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+.+........+.++|.|.+.+. | ...|.|++++.......   . .......++.|.+..       .|.|.
T Consensus         3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~---~-~~~~~~~dgtys~~S-------~L~v~   71 (101)
T d1cqka_           3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYK---N-TQPIMDTDGSYFVYS-------KLNVQ   71 (101)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEE---E-CCCEECTTSCEEEEE-------EEEEE
T ss_pred             CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcE---E-eeeecCCCCcEEEEE-------EEEEC
Confidence            4555443333222346689999999884 3 67899999876532111   0 111122344454444       57775


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                      .-.......|+|++.+..
T Consensus        72 ~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          72 KSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             HHHHHTTCCEEEEEECTT
T ss_pred             HHHhCCCCEEEEEEEECC
Confidence            554444568999998543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.70  E-value=0.00015  Score=48.52  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=43.6

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------cC----------CCceeeeeeeccCccccceEEEeecCC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------MN----------NQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.+      ..          ..|+.+...   .......|.|.+++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D---~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD---TSKNQFSLKLSSVTA   87 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE---TTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEecc---Cchheeccccccccc
Confidence            35779999999999986554  5889872  2111      11          134444321   112234589999999


Q ss_pred             CCCeEEEEE
Q psy16652        344 RQFGQYACK  352 (384)
Q Consensus       344 ~d~G~Y~C~  352 (384)
                      +|.+.|.|.
T Consensus        88 eDtA~YYCA   96 (120)
T d1dn0b1          88 ADTAVYYCA   96 (120)
T ss_dssp             GGCEEEEEE
T ss_pred             ccccEEEEE
Confidence            999999994

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=2e-05  Score=53.45  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             CcccccCCcEEEEEEEeccCCCeEEEEECC--EEe------cCCCc-----eeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652        282 RQGQALQYDAILECHVEAYPPPAIVWIKDG--VQI------MNNQH-----YSVSHFATSDEFSDTSLRVITIERRQFGQ  348 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  348 (384)
                      ...+.+|++++|.|.... ....+.||+..  ..+      .....     ................|.|..++.+|+|.
T Consensus         7 ~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   85 (112)
T d2cdeb1           7 YLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQ   85 (112)
T ss_dssp             EEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSE
T ss_pred             EEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccccc
Confidence            345788999999999753 23579999832  111      00000     00000011112234679999999999999


Q ss_pred             EEEEEEeCCc
Q psy16652        349 YACKAANKYG  358 (384)
Q Consensus       349 Y~C~a~n~~g  358 (384)
                      |.|.+....+
T Consensus        86 YyCA~~~~~~   95 (112)
T d2cdeb1          86 YLCASSENIG   95 (112)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEecCCC
Confidence            9998876543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00027  Score=45.67  Aligned_cols=70  Identities=14%  Similarity=0.241  Sum_probs=39.6

Q ss_pred             eccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..++.++|.|.+.+.  +...++|++++........  .........+..|..          .....+...|...|+|+
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~--~~~~~~~~~~~t~~~----------~s~l~v~~~~~~~ytC~   80 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEF--EPKDVLPNGDGTYQG----------WITLAVPPGEEQRYTCQ   80 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGS--CCCEEEECTTSCEEE----------EEEEEECTTCGGGEEEE
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcc--cccceEeCCCceEEE----------EEEEEECCCCCCEEEEE
Confidence            357789999999883  4679999998865321111  000000011112222          22233455666789999


Q ss_pred             EEEc
Q psy16652        163 VIIS  166 (384)
Q Consensus       163 ~~~~  166 (384)
                      +.+.
T Consensus        81 V~H~   84 (94)
T d1de4a1          81 VEHP   84 (94)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            9854

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.67  E-value=0.00015  Score=47.45  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+.+.. ....++..+|.|.+.+.  +...|+|++++.......   .........++.|..          +...
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgtf~~----------~s~l   69 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGV---VSTGLIQNGDWTFQT----------LVML   69 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSE---EECCCEECSSSCEEE----------EEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCC---EECeEEeCCCcEEEE----------EEEe
Confidence            3555553332 23456778999999883  467899999876532111   011111112223322          2233


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                      .+..++.+.|+|++.+..
T Consensus        70 ~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          70 ETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ECCCCTTCEEEEEEECTT
T ss_pred             eEcCCCCCEEEEEEEECC
Confidence            456677779999998543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.66  E-value=0.00014  Score=48.65  Aligned_cols=69  Identities=14%  Similarity=0.274  Sum_probs=45.3

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------cC----------CCceeeeeeeccCccccceEEEeecCCC
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GVQI------MN----------NQHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +.+|+++.|.|.++|+...  .+.|+|.  |+.+      ..          ..|+.++.   +.......|.|..++.+
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~---D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_          11 VPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQ---GNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             ECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEE---CSSTTEEEEEECSCCGG
T ss_pred             ECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEec---ccCCcceecccccCCcC
Confidence            5779999999999986544  5889873  1111      11          12344332   11123346899999999


Q ss_pred             CCeEEEEEEEeC
Q psy16652        345 QFGQYACKAANK  356 (384)
Q Consensus       345 d~G~Y~C~a~n~  356 (384)
                      |++.|.|.....
T Consensus        88 DtA~YYCAr~~~   99 (119)
T d1kxvc_          88 DTAMYYCKPSLR   99 (119)
T ss_dssp             GCEEEEEEEEES
T ss_pred             CcceEeeeeccc
Confidence            999999976544

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=6.7e-06  Score=55.46  Aligned_cols=64  Identities=19%  Similarity=0.381  Sum_probs=42.9

Q ss_pred             eecCceEEEEEEeccc-CCC-eEEEEeCCCcccccC--------------ceeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        195 VSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTG--------------GSIYRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       195 ~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~--------------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      +..++.++|.|.+.++ |.. .|.|+++|..+....              +.....+.|.|..-.......|+|.|.|..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            3457899999999884 443 899999887654321              112223456665555455668999999854

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.65  E-value=0.0001  Score=48.79  Aligned_cols=85  Identities=14%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+.+.......++.++|.|.+.+.  ....|.|.+++......   .. .......++.|....       .|.|.
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~---~~-~~~~~~~dgtys~~S-------~L~v~   72 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNY---KN-TEPVLDSDGSYFMYS-------KLRVE   72 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE---EE-CCCEECTTSCEEEEE-------EEEEE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCc---EE-ccceeCCCCcEEEEE-------EEEEC
Confidence            4555544333322357889999999883  36789999987542211   11 111122334554443       57665


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                      .-.......|+|.+.+..
T Consensus        73 ~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          73 KKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             HHHHHTCCCEEEEEECTT
T ss_pred             HHHcCCCCEEEEEEEeCC
Confidence            554344558999998543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00014  Score=47.52  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=48.4

Q ss_pred             cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652        273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK  352 (384)
Q Consensus       273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  352 (384)
                      +|.+...+. ..+..|+.++|.|.... ....+.++++|...........   ..........+.|.+++..|+|.|+|.
T Consensus         4 kPsLsa~P~-~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~---~~~~~~~~a~F~l~~v~~~~~G~Y~C~   78 (98)
T d1ugna2           4 KPTLSAQPS-PVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQ---PHARGSSRAIFSVGPVSPSRRWWYRCY   78 (98)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC---------CCEEEEEECCCCTTSCEEEEEE
T ss_pred             CCEEEeeCC-CccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeE---EcCCCceEEEEEeeecccCCCeEEEEe
Confidence            466666553 45789999999999753 4457888888764321111000   000011235689999999999999998


Q ss_pred             EEeCC
Q psy16652        353 AANKY  357 (384)
Q Consensus       353 a~n~~  357 (384)
                      -....
T Consensus        79 y~~~~   83 (98)
T d1ugna2          79 AYDSN   83 (98)
T ss_dssp             EECTT
T ss_pred             eEcCC
Confidence            76543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=0.00015  Score=47.90  Aligned_cols=85  Identities=13%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      .|.+.+.+.......++.++|.|.+.+.  ....|.|.+++......   .. .......++.|....       .|.|.
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~---~~-~~~~~~~dgt~s~~S-------~L~v~   72 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY---KN-TPPTMDTDGSYFLYS-------KLNVK   72 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE---EE-CCCEECTTSCEEEEE-------EEEEE
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCc---EE-cccEeCCCCCEEEEE-------EEEEC
Confidence            4555544333332346789999999874  35789999988653211   00 111122334444443       57776


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                      .-.......|+|.+.+..
T Consensus        73 ~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          73 KETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             HHHHHTTCCEEEEEECTT
T ss_pred             HHHhCCCCEEEEEEEeCC
Confidence            655555558999998543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.63  E-value=0.00024  Score=46.47  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=47.0

Q ss_pred             cCCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652         70 QRTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS  147 (384)
Q Consensus        70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  147 (384)
                      ..+|.+.+.+.. .+..|+..+|.|.+.+.  +...|+|.+++...... .  .........++.|....       .|.
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~-~--~~~~~~~~~dgtf~~~s-------~l~   71 (99)
T d1uvqa1           3 NEVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEG-V--SETSFLSKSDHSFFKIS-------YLT   71 (99)
T ss_dssp             CCCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTT-E--EECCCEECTTSCEEEEE-------EEE
T ss_pred             CcCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCC-c--EecceEECCCCCEEEEE-------EEE
Confidence            356666654322 24567889999999884  46789999987643211 0  00111111223333322       354


Q ss_pred             EeecCCCCCeeEEEEEEEc
Q psy16652        148 IKEIQETDAGIYKCEVIIS  166 (384)
Q Consensus       148 i~~~~~~d~G~Y~C~~~~~  166 (384)
                      +   ..+|...|+|++.+.
T Consensus        72 v---~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          72 F---LPSADEIYDCKVEHW   87 (99)
T ss_dssp             E---CCCTTCCEEEEEECT
T ss_pred             E---cCCCCCEEEEEEEeC
Confidence            4   345556899999754

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=4.6e-05  Score=51.02  Aligned_cols=88  Identities=16%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+-+.......++.++|.|.+.+. | ...|.|.+++.......  ..........++.|....       .|.|
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~--~~~~~~~~~~dgtys~~S-------~L~v   74 (107)
T d1mjul2           4 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV--LNSWTDQDSKDSTYSMSS-------TLTL   74 (107)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE--EEEECCCCTTTCCEEEEE-------EEEE
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCe--EeccccEecCCCCEEEEE-------EEEE
Confidence            34555554433322346789999999874 3 57899999776422110  000111111233444433       5666


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-.......|+|.+.+..
T Consensus        75 ~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          75 TKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             EHHHHHTCCEEEEEEECTT
T ss_pred             CHHHhCCCCEEEEEEEECC
Confidence            5554444558999997543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00017  Score=47.86  Aligned_cols=65  Identities=25%  Similarity=0.446  Sum_probs=41.5

Q ss_pred             ecCceEEEEEEecc-cCC-CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCC--CCeEEEEEEEeCCCC
Q psy16652        196 SEGQTVYLYCYANG-FPA-PTISWRRDNSAALST---------GGSIYRGNILKIPNITKT--DRGTYYCVAQNGVGR  260 (384)
Q Consensus       196 ~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~--d~G~Y~C~~~~~~~~  260 (384)
                      .....+.|.|.+.| +|. ..|+|.+++......         ++.....+.|.|......  ....|+|.+.|..+.
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            34678999999988 454 389999988654321         122223346777666553  235799999997543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00019  Score=48.97  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             cceEEEeecCCCCCeEEEEEEEeCC
Q psy16652        333 DTSLRVITIERRQFGQYACKAANKY  357 (384)
Q Consensus       333 ~~~l~i~~~~~~d~G~Y~C~a~n~~  357 (384)
                      ...|+|.+++.+|+|.|.|.+....
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~~~~  100 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIEVMY  100 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEeccc
Confidence            4569999999999999999876543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=4.8e-05  Score=47.34  Aligned_cols=55  Identities=18%  Similarity=0.396  Sum_probs=40.9

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC-CCCeEEEEEEEeCC
Q psy16652        287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER-RQFGQYACKAANKY  357 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~  357 (384)
                      .|.+|+|+|...+.  ..+.|.+++..+....              ...|.+.+.+. +++|.|.|...+..
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~--------------~~~L~L~~FSE~e~SGyY~C~~~~~~   68 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQELPQKH--------------DKHLVLQDFSEVEDSGYYVCYTPASN   68 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEECSCC--------------CSEEEEESCCTTTSCEEEEEECSSCC
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccCCCCC--------------CcEEEEccccccccCcceEEecCCCC
Confidence            57899999997653  4799999999886442              34677777654 79999999654443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.0002  Score=48.85  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=44.5

Q ss_pred             CceEEeecCceEEEEEEecccCCC---eEEEEeCCCccccc---------------Cce------eEeccEEEEcCCCCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALST---------------GGS------IYRGNILKIPNITKT  245 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~---------------~~~------~~~~~~l~i~~~~~~  245 (384)
                      +..+.+.+|+.++|.|........   .+.|+|....-...               ...      ......|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            345667889999999997432222   58899854321110               000      011237999999999


Q ss_pred             CCeEEEEEEEe
Q psy16652        246 DRGTYYCVAQN  256 (384)
Q Consensus       246 d~G~Y~C~~~~  256 (384)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998865

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.58  E-value=0.00029  Score=47.35  Aligned_cols=70  Identities=11%  Similarity=0.291  Sum_probs=44.0

Q ss_pred             cccccCCcEEEEEEEeccCC----CeEEEEEC--CEEec------C----------CCceeeeeeeccCccccceEEEee
Q psy16652        283 QGQALQYDAILECHVEAYPP----PAIVWIKD--GVQIM------N----------NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~----~~v~W~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      ..+.+|++++|.|.+.|+..    ..+.|++.  |+.+.      .          ..|+.+..   ........|.|.+
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~---d~s~~~~~L~i~~   86 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITK---DASKKQVVLTLTN   86 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEEC---CTTTTEEEEEEES
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceec---ccccceeeeeEEe
Confidence            34677999999999987532    35889973  21110      0          12222221   1112235699999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy16652        341 IERRQFGQYACKAAN  355 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n  355 (384)
                      ++.+|.+.|.|....
T Consensus        87 l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          87 LDPVDTATYYCARTS  101 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             eeeccceEEeeEecC
Confidence            999999999997543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.56  E-value=0.00011  Score=48.99  Aligned_cols=69  Identities=13%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             CceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652        190 TRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGV  258 (384)
Q Consensus       190 ~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  258 (384)
                      ++...+..+..+.|.|.+.++ |.. .+.|.+++..+....         +.....+.|.+..-...  ..|+|.+.|..
T Consensus        16 Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~~ytC~V~H~s   93 (107)
T d1hxmb2          16 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--KEHRCIVRHEN   93 (107)
T ss_dssp             CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGG--SCEEEEEEETT
T ss_pred             CCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCC--CeEEEEEEECC
Confidence            333335567889999999884 443 799999887654321         11223346776554432  36999999965


Q ss_pred             CC
Q psy16652        259 GR  260 (384)
Q Consensus       259 ~~  260 (384)
                      ..
T Consensus        94 ~~   95 (107)
T d1hxmb2          94 NK   95 (107)
T ss_dssp             SG
T ss_pred             CC
Confidence            44

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.55  E-value=0.00028  Score=46.78  Aligned_cols=69  Identities=13%  Similarity=0.315  Sum_probs=43.9

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CE--E----ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GV--Q----IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~--~----~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+  +    +. .          ..|+.++.   +.......|.|.+++
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisr---D~s~~tvyL~~~~L~   87 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSL---ETSASTAYLQINSLK   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEE---EGGGTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEe---cCCceeEEeeeeecc
Confidence            45789999999999985433  5888872  21  1    11 1          12333332   111123458899999


Q ss_pred             CCCCeEEEEEEEeC
Q psy16652        343 RRQFGQYACKAANK  356 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~  356 (384)
                      .+|.+.|.|. ...
T Consensus        88 ~eDtAvYYCA-r~~  100 (118)
T d1nlbh1          88 NEDTATYFCA-RFL  100 (118)
T ss_dssp             GGGCEEEEEE-EEC
T ss_pred             cCcceEEEEe-eeC
Confidence            9999999994 443

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.54  E-value=1.7e-05  Score=53.88  Aligned_cols=73  Identities=12%  Similarity=0.257  Sum_probs=45.5

Q ss_pred             CCCcccccCCcEEEEEEEeccCCCeEEEEECC--EE---e---cC---------CCceeeeeeeccCccccceEEEeecC
Q psy16652        280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDG--VQ---I---MN---------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      |....+.+|+.++|.|.... ....+.||+..  +.   +   ..         ..++...    ........|+|.+++
T Consensus         8 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQ----QFDDYHSEMNMSALE   82 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCE----ECTTSCEEEECCSCC
T ss_pred             CCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeE----cCCCCeEEEEecccC
Confidence            33445788999999998654 23579999832  11   1   00         0111111    111234579999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy16652        343 RRQFGQYACKAANKY  357 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~  357 (384)
                      .+|+|.|.|.+....
T Consensus        83 ~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          83 LEDSAMYFCASSLRW   97 (113)
T ss_dssp             GGGCEEECEEEESSS
T ss_pred             cCCceeEEEEeecCC
Confidence            999999999876443

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00017  Score=47.64  Aligned_cols=73  Identities=15%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             ccCCcEEEEEEEecc-CCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        286 ALQYDAILECHVEAY-PPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       286 ~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ..++.+.|.|.+.|+ |+.  .+.|.+++..+... .........+.+...+.|+|....+.....|+|.|......
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~-~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCcee-EeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            346789999999994 553  57788877654321 11112222233334556777777766667899999986543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=0.00031  Score=45.75  Aligned_cols=69  Identities=17%  Similarity=0.342  Sum_probs=40.2

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeecCCCC
Q psy16652        287 LQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITIERRQ  345 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  345 (384)
                      +|+++.|+|.++|....  .+.|++.  |+.+      . .          ..|+.++.   ........|.|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~---D~s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTV---DKPSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEec---cccccEEEeeeeeccccc
Confidence            47899999999986544  6889872  2221      1 1          12333322   111233468999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16652        346 FGQYACKAANKYG  358 (384)
Q Consensus       346 ~G~Y~C~a~n~~g  358 (384)
                      .+.|.|......+
T Consensus        78 TAvYYCAr~~~~~   90 (103)
T d1oari_          78 SAVYYCARMWYYG   90 (103)
T ss_dssp             CSEEEEEEEECSS
T ss_pred             cEEEEeEEECCCC
Confidence            9999998665544

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.52  E-value=0.00033  Score=46.50  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------cC----------CCceeeeeeeccCccccceEEEeecCC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------MN----------NQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .+.+|+++.|+|.++|+...  .+.|++.  |+.+      ..          ..|+.+..   ........|.|+.++.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~---D~s~~~~~L~i~~L~~   87 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLV---NTSKNQFSLRLSSVTA   87 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEE---ETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeec---ccchhhhhcccccccc
Confidence            45779999999999986544  6889872  2111      11          12333322   1122345689999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy16652        344 RQFGQYACKAANKY  357 (384)
Q Consensus       344 ~d~G~Y~C~a~n~~  357 (384)
                      +|.+.|.|......
T Consensus        88 eDtAvYyCAr~~~~  101 (116)
T d7fabh1          88 ADTAVYYCARNLIA  101 (116)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccceEEEeeeecCC
Confidence            99999999765443

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00011  Score=49.06  Aligned_cols=88  Identities=16%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+.+.......++.++|.|.+.+. | ...|+|.+++...........  ......++.|....       .|.|
T Consensus         4 ~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~--~~~~~~dgtys~~S-------~L~v   74 (107)
T d1c5cl2           4 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV--TEQDSKDSTYSLSS-------TLTL   74 (107)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE--CCCCTTTCCEEEEE-------EEEE
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEec--ccccCCCCcEEEEE-------EEEE
Confidence            34555554333323346789999999874 3 568999998765322111000  00011233444443       5777


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-.......|+|.+.+..
T Consensus        75 ~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          75 SKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             EHHHHTTCCEEEEEEECTT
T ss_pred             CHHHhCCCCEEEEEEEECC
Confidence            5554444448999998543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.48  E-value=0.00028  Score=45.98  Aligned_cols=81  Identities=20%  Similarity=0.338  Sum_probs=40.7

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+.+... ...|+.++|.|.+.+.  ....|.|.+++.+.....   .........++.|....       .|.  
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~---~~~~~~~~~dgty~~~s-------~l~--   68 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGV---VSTPLIRNGDWTFQILV-------MLE--   68 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTE---EECCCEECSSSCEEEEE-------EEE--
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCc---EeceeecCCCceEEEEE-------Eec--
Confidence            34555433222 3457788999999884  367899999875422111   11111111223343332       243  


Q ss_pred             ecCCCCCeeEEEEEEEc
Q psy16652        150 EIQETDAGIYKCEVIIS  166 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~  166 (384)
                       +..++...|+|.+.+.
T Consensus        69 -v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          69 -MTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             -CCSCTTCCEEEEEECT
T ss_pred             -cCCCCCCEEEEEEEeC
Confidence             3556667999999854

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.47  E-value=9.2e-05  Score=48.39  Aligned_cols=69  Identities=17%  Similarity=0.169  Sum_probs=40.0

Q ss_pred             CCcEEEEEEEeccCCC--eEEEEECCEEecCC----C-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652        288 QYDAILECHVEAYPPP--AIVWIKDGVQIMNN----Q-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS  359 (384)
Q Consensus       288 g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  359 (384)
                      ...++|.|.+.|+.+.  .|.|.+||..+...    . .........+.....+.|.+   ..++...|+|.+......
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYV---DGGLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEE---CTTCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            3578999999995444  79999998665321    1 11111222222222333444   445556899999875443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.47  E-value=0.00022  Score=47.33  Aligned_cols=70  Identities=10%  Similarity=0.296  Sum_probs=45.2

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|+|.++|+...  .+.|++.  |+.+      . .          ..|+.++.   +.......|.|+.++
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~---D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTA---DTSTNIAYMELSSLR   87 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeec---ccccceEEEeecccC
Confidence            35779999999999986444  5789872  2211      1 1          12333322   111123458999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy16652        343 RRQFGQYACKAANK  356 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~  356 (384)
                      .+|.+.|.|.....
T Consensus        88 ~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          88 SDDTAVYYCAVPDP  101 (117)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cCcceEEEEeEcCC
Confidence            99999999986544

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=0.00046  Score=45.68  Aligned_cols=68  Identities=16%  Similarity=0.384  Sum_probs=44.7

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------cC----------CCceeeeeeeccCccccceEEEeecCC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------MN----------NQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .+.+|+++.|+|.++|+...  .+.|++.  |+.+      ..          ..|+.++.   ........|.|.+++.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~---D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINR---DTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEE---ETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEec---ccccceeecccccccc
Confidence            45789999999999986544  5888872  2111      11          13444432   1112234689999999


Q ss_pred             CCCeEEEEEEE
Q psy16652        344 RQFGQYACKAA  354 (384)
Q Consensus       344 ~d~G~Y~C~a~  354 (384)
                      +|.+.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00028  Score=47.03  Aligned_cols=67  Identities=16%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.      +. .          ..|+.++.   ....+...|.|.+++
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSr---D~s~nt~~L~~~sL~   87 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTA---DQSSSTAYMQLNSLT   87 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEE---EGGGTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEc---ccCcceEEeeeeccc
Confidence            35679999999999986544  5889872  211      11 1          12333332   111123458899999


Q ss_pred             CCCCeEEEEEE
Q psy16652        343 RRQFGQYACKA  353 (384)
Q Consensus       343 ~~d~G~Y~C~a  353 (384)
                      .+|.+.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999954

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.45  E-value=0.0005  Score=45.71  Aligned_cols=72  Identities=15%  Similarity=0.336  Sum_probs=46.5

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|....  .+.|++.  |+.      +. .          ..|+.++.   ........|.|++++
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~nt~~L~~~sL~   87 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR---DNAKNSLYLQMSKVR   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE---CSSSCEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEee---cCccceeeccccccC
Confidence            35779999999999986544  5788872  211      11 1          12333332   111233458899999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy16652        343 RRQFGQYACKAANKYG  358 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~g  358 (384)
                      .+|.+.|.|......+
T Consensus        88 ~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          88 SEDTALYYCARLHYYG  103 (118)
T ss_dssp             GGGCEEEEEEEEETTT
T ss_pred             CCcceEEEeeEecCCC
Confidence            9999999998766544

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.45  E-value=2.3e-05  Score=54.45  Aligned_cols=63  Identities=22%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             ecCceEEEEEEeccc-CCC-eEEEEeCCCccccc---------------CceeEeccEEEEcCCCCCCCe-EEEEEEEeC
Q psy16652        196 SEGQTVYLYCYANGF-PAP-TISWRRDNSAALST---------------GGSIYRGNILKIPNITKTDRG-TYYCVAQNG  257 (384)
Q Consensus       196 ~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~  257 (384)
                      ..+..++|.|.+.++ |.. .|.|++++..+...               ++.....+.|.|..-...+.| .|+|.|.|.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            446789999999884 433 79999988755321               112233456777666656655 699999985


Q ss_pred             C
Q psy16652        258 V  258 (384)
Q Consensus       258 ~  258 (384)
                      .
T Consensus        98 ~   98 (127)
T d1ogae2          98 G   98 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.43  E-value=0.00043  Score=45.86  Aligned_cols=69  Identities=17%  Similarity=0.382  Sum_probs=44.4

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ecCC----------CceeeeeeeccCccccceEEEeecCC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IMNN----------QHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .+.+|+++.|.|.++|....  .+.|++.  |+.      +..+          .|+.++.   +.......|.|++++.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~---D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISK---DNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEE---EGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEec---cCCCceEEcceeeeee
Confidence            45779999999999986544  5888872  211      1111          2333322   1112234589999999


Q ss_pred             CCCeEEEEEEEe
Q psy16652        344 RQFGQYACKAAN  355 (384)
Q Consensus       344 ~d~G~Y~C~a~n  355 (384)
                      +|.+.|.|.-..
T Consensus        88 eDTAvYYCAr~~   99 (116)
T d1a2yb_          88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceEEEEEEeC
Confidence            999999997543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.43  E-value=0.00031  Score=47.10  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|....  .+.|++.  |+.+      . .          ..|+.+..   ........|.|.+++
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~---d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTV---EKSSSTVYLEFSRLT   87 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEE---ETTTTEEEEEEEEEC
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeec---ccccceeeeeecccC
Confidence            45679999999999885433  5889872  2111      1 0          12333322   111223459999999


Q ss_pred             CCCCeEEEEEEE
Q psy16652        343 RRQFGQYACKAA  354 (384)
Q Consensus       343 ~~d~G~Y~C~a~  354 (384)
                      .+|.+.|.|...
T Consensus        88 ~eDsAvYYCA~~   99 (119)
T d1qnzh_          88 SDDSAVYYCAIH   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccceeEEEEEEe
Confidence            999999999643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00032  Score=46.59  Aligned_cols=68  Identities=12%  Similarity=0.257  Sum_probs=43.2

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEE--CCEEe------c-C----------CCceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIK--DGVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|.|.++|+...  .+.|++  .|+.+      . .          ..|+.++.   ....+...|.|+++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~---D~s~~~~~L~i~~L   86 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTA---VTSTTTAYMELSSL   86 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEc---ccCccEeEeeeccc
Confidence            345789999999999985433  578877  22211      1 0          11333322   11122345889999


Q ss_pred             CCCCCeEEEEEE
Q psy16652        342 ERRQFGQYACKA  353 (384)
Q Consensus       342 ~~~d~G~Y~C~a  353 (384)
                      +.+|.+.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999964

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00019  Score=44.09  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC-CCCeEEEEEEEeC-CcceEEEE
Q psy16652        287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER-RQFGQYACKAANK-YGSAQKEI  364 (384)
Q Consensus       287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~-~g~~~~~~  364 (384)
                      .|.+|.|+|.-.  +...+.|.+++..+..........      .....|.+.+.+. +++|.|.|.+... .......+
T Consensus         9 SGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~------~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~L   80 (91)
T d1xiwa_           9 SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIG------SDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL   80 (91)
T ss_dssp             ETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEE------EETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEE
T ss_pred             eCCEEEEECCCC--CCCceeeeeccccccCCCcccccc------cccceEEecccCccccCceEEEEcCCCCCCCcceEE
Confidence            578999999742  446799999998886542211000      1345688888775 7899999998543 22333345


Q ss_pred             EEEE
Q psy16652        365 ELFD  368 (384)
Q Consensus       365 ~l~v  368 (384)
                      .|+.
T Consensus        81 YLKA   84 (91)
T d1xiwa_          81 YLRA   84 (91)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.41  E-value=0.00025  Score=46.11  Aligned_cols=80  Identities=19%  Similarity=0.210  Sum_probs=45.3

Q ss_pred             CCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652         72 TPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK  149 (384)
Q Consensus        72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  149 (384)
                      +|.+.+...+.  ..++.++|.|.+.+. | ...++|++++.......    ........++.|....       .|.|.
T Consensus         3 ~P~V~l~~~~~--~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~----~~~~~~~~dgty~~~S-------~L~v~   69 (96)
T d2h26a1           3 KPEAWLSSGPS--PGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQ----LGDILPNANWTWYLRA-------TLDVA   69 (96)
T ss_dssp             CCEEEEEEESC--CSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCE----ECCCEECTTSCEEEEE-------EEEEE
T ss_pred             CCEEEEEcCCC--CCCCeEEEEEEEEEEECCCcEEEEEECcccCCCce----eCccEeCCCCcEEEEE-------EEEEe
Confidence            44554433332  345689999999884 4 56899999775432111    0111112233444433       46554


Q ss_pred             ecCCCCCeeEEEEEEEcc
Q psy16652        150 EIQETDAGIYKCEVIISL  167 (384)
Q Consensus       150 ~~~~~d~G~Y~C~~~~~~  167 (384)
                         .+|...|+|.+.+..
T Consensus        70 ---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          70 ---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             ---GGGCTTEEEEEEEGG
T ss_pred             ---CccCCEEEEEEEeCC
Confidence               345568999998654

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00029  Score=46.37  Aligned_cols=83  Identities=12%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+-........++.++|.|.+.+.  ....|.|.+++...   .  ..... ....++.|....       .|.|
T Consensus         4 ~aP~V~~l~p~~~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~---~--~~~~~-~~~~~g~~s~~S-------~L~v   70 (101)
T d1kcvh2           4 TAPSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSS---G--VLTVS-AVLQSGLYTLSS-------NTTV   70 (101)
T ss_dssp             BCCEEEEECCCSCCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCT---T--EEECC-CEEETTEEEEEE-------EEEE
T ss_pred             CCCEEEeECCCccccCCCeEEEEEEEEEEeCCCCEEEEecCCCcc---c--ceeee-eecCCCCEEEEE-------EEEE
Confidence            34555443322223467899999999883  36789997655431   1  11111 122345555443       5777


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-.. +.|.|+|.+.+..
T Consensus        71 ~~~~w-~~~~ytC~V~H~~   88 (101)
T d1kcvh2          71 ASGTW-PSASVTCLVAHPK   88 (101)
T ss_dssp             ETTTT-TTSCCEEEEEEGG
T ss_pred             chhhc-CCCeEEEEEEeCC
Confidence            55444 4679999998653

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.40  E-value=0.00031  Score=45.84  Aligned_cols=66  Identities=17%  Similarity=0.293  Sum_probs=41.5

Q ss_pred             cccCCcEEEEEEEeccCC--CeEEEEEC--CEE------ecCC----------CceeeeeeeccCccccceEEEeecCCC
Q psy16652        285 QALQYDAILECHVEAYPP--PAIVWIKD--GVQ------IMNN----------QHYSVSHFATSDEFSDTSLRVITIERR  344 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~--~~v~W~~~--~~~------~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~  344 (384)
                      +.+|+++.|.|.++|+..  ..+.|++.  |+.      +...          .|+.++.   ........|.|++++.+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSr---d~s~n~~~L~i~~l~~e   81 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISR---DNAKKTVYLEMNSLEPE   81 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEE---CTTTCCEEEEECSCCGG
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEec---CCceeEEEEeecCCCcc
Confidence            568999999999988533  25789873  111      1111          2333332   11223456899999999


Q ss_pred             CCeEEEEEE
Q psy16652        345 QFGQYACKA  353 (384)
Q Consensus       345 d~G~Y~C~a  353 (384)
                      |.+.|.|..
T Consensus        82 DtAvYyCA~   90 (107)
T d1sjva_          82 DTAVYYCYT   90 (107)
T ss_dssp             GCSEEEEEE
T ss_pred             cceeeeEec
Confidence            999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.40  E-value=0.00037  Score=45.98  Aligned_cols=67  Identities=10%  Similarity=0.348  Sum_probs=43.4

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.      +. .          ..|+.++.   ........|.|++++
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSr---D~s~nt~~L~~~~L~   87 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISR---DNAQNNLYLQLNSLR   87 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEec---cCccceeeeeeeeec
Confidence            45789999999999986444  5888872  211      11 1          12333332   111223458999999


Q ss_pred             CCCCeEEEEEE
Q psy16652        343 RRQFGQYACKA  353 (384)
Q Consensus       343 ~~d~G~Y~C~a  353 (384)
                      .+|.+.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.40  E-value=0.00067  Score=45.39  Aligned_cols=71  Identities=13%  Similarity=0.285  Sum_probs=45.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.      +. .          ..|+.+...   .......|.|.+++
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D---~s~nt~~L~i~~L~   87 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRD---NAKNTLYLQMSSLK   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEE---GGGTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEec---Ccccccccceeeec
Confidence            45789999999999986543  5788872  211      11 1          123333321   11123458899999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy16652        343 RRQFGQYACKAANKY  357 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~~  357 (384)
                      .+|.+.|.|......
T Consensus        88 ~eDtAvYYCAr~~~~  102 (123)
T d1mqkh_          88 SEDTAMYYCVRHEYY  102 (123)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             cCcccceeEEecCCC
Confidence            999999999766543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00064  Score=43.37  Aligned_cols=69  Identities=14%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             eccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..++.++|.|.+.+.  ....|+|.+++.........   .......++.|....       .|.|.   ..+...|+|.
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~~gt~~~~s-------~l~v~---~~~~~~ytC~   79 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMEL---VETRPAGDGTFQKWA-------SVVVP---LGKEQYYTCH   79 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEE---CCCEECSSSCEEEEE-------EEEEE---SSTTTTCEEE
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEE---CcEecCCCCcEEEEE-------EEEec---CcCCCEEEEE
Confidence            356789999999885  36789999987643211110   011112223333322       45554   3444579999


Q ss_pred             EEEc
Q psy16652        163 VIIS  166 (384)
Q Consensus       163 ~~~~  166 (384)
                      +.+.
T Consensus        80 V~H~   83 (89)
T d2mhaa1          80 VYHQ   83 (89)
T ss_dssp             EECS
T ss_pred             EEEC
Confidence            9754

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00038  Score=46.19  Aligned_cols=68  Identities=13%  Similarity=0.249  Sum_probs=43.8

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-CC----------CceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-NN----------QHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|.|.++|+..-  .+.|++.  |+.      +. ..          .|+.++.   +.......|.|+++
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~---D~s~~t~~L~~~sL   86 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTV---DKSSSTAYMELARL   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEE---EGGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEec---ccCcceEeeccccc
Confidence            346789999999999986544  5888872  211      11 11          2333332   11122345889999


Q ss_pred             CCCCCeEEEEEE
Q psy16652        342 ERRQFGQYACKA  353 (384)
Q Consensus       342 ~~~d~G~Y~C~a  353 (384)
                      +.+|.+.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999953

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.0004  Score=46.15  Aligned_cols=67  Identities=13%  Similarity=0.257  Sum_probs=42.5

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-CC----------CceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-NN----------QHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.+      . .+          .|+.+..   ........|.|.+++
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~---D~s~~t~~L~i~~l~   87 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTV---DKSSSTAFMHLNSLT   87 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEee---ccCceeeEeeeeecC
Confidence            35679999999999985433  5889872  2211      1 11          2333221   111223458999999


Q ss_pred             CCCCeEEEEEE
Q psy16652        343 RRQFGQYACKA  353 (384)
Q Consensus       343 ~~d~G~Y~C~a  353 (384)
                      .+|.+.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (115)
T d1f3dh1          88 FEDSAVYYCAN   98 (115)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCcEEEEEec
Confidence            99999999953

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.37  E-value=0.00062  Score=45.03  Aligned_cols=69  Identities=13%  Similarity=0.235  Sum_probs=44.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|....  .+.|++.  |+.      +. .          ..|+.++..   ...+...|.+.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD---~s~nt~yL~m~~L~   87 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISAD---NSKNTAYLQMNSLR   87 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEE---GGGTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEec---cccceEEecccccC
Confidence            35779999999999986533  6888872  211      11 1          133333321   11233458899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999996543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.37  E-value=0.00067  Score=44.31  Aligned_cols=69  Identities=19%  Similarity=0.373  Sum_probs=44.4

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CE--E----ecC-------------CCceeeeeeeccCccccceEEEee
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GV--Q----IMN-------------NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~--~----~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .+.+|+++.|+|.++|....  .+.|++.  |+  +    +..             ..|+.++.   ........|.|++
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~---D~s~~t~~L~i~s   87 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISR---DDSQSMLYLQMNN   87 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEE---ETTTTEEEEEECS
T ss_pred             eECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecc---ccccceeEecccC
Confidence            45789999999999985544  6888872  21  1    110             12333332   1112234588999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy16652        341 IERRQFGQYACKAAN  355 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n  355 (384)
                      ++.+|.+.|.|.-.+
T Consensus        88 L~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          88 LKTEDTGIYYCVRGR  102 (109)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCHhHCEEEEEEEcC
Confidence            999999999997543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.36  E-value=0.00067  Score=44.53  Aligned_cols=69  Identities=16%  Similarity=0.190  Sum_probs=41.0

Q ss_pred             eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         84 KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      +..|+..+|.|.+.+. | ...|.|.+++........    .......++.|....       .|.|   ..+|...|+|
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~----~~~~~~~dgty~~~S-------~L~v---~~~~~~~ytC   80 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGP----TFVSAVDGLSFQAFS-------YLNF---TPEPSDIFSC   80 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCC----EEEEEETTTEEEEEE-------EEEE---CCCTTCCEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEe----ceEEeCCCCcEEEEE-------EEEE---ecCCCCEEEE
Confidence            4568899999999884 3 678999998764211100    000111233344333       3544   4455568999


Q ss_pred             EEEEc
Q psy16652        162 EVIIS  166 (384)
Q Consensus       162 ~~~~~  166 (384)
                      .+.+.
T Consensus        81 ~V~H~   85 (103)
T d1hdma1          81 IVTHE   85 (103)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99865

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00081  Score=44.63  Aligned_cols=71  Identities=14%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-CC----------CceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-NN----------QHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|.|.++|+...  .+.|+|.  |+.      +. ..          .|+.+..   ........|.|.++
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~---D~s~~t~~L~m~sL   85 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTS---DKSSNTAYLELSSL   85 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEE---ETTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEe---ccCceeEeeccccc
Confidence            346789999999999986544  6889872  211      11 11          2333322   11123345899999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy16652        342 ERRQFGQYACKAANK  356 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n~  356 (384)
                      +.+|.+.|.|.....
T Consensus        86 ~~eDtAvYYCAr~~~  100 (117)
T d1um5h1          86 TSEDSAVYYCARSSM  100 (117)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CCCcceEEEEeeccC
Confidence            999999999975443

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.35  E-value=0.00036  Score=46.95  Aligned_cols=69  Identities=14%  Similarity=0.341  Sum_probs=45.1

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|+|.++|+...  .+.|+|.  |+.      +. .          ..|+.++.   ........|.|++++
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~---D~s~~t~yLq~~sL~   86 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQ---DKAKNMAYLRMDSVK   86 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE---EGGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEec---ccccceeeceecccc
Confidence            35789999999999986544  6889882  111      11 1          12333332   111233458899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        87 ~eDtAvYYCAr~~   99 (124)
T d1zvya1          87 SEDTAIYTCGATR   99 (124)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CCcceEEEEeecc
Confidence            9999999997643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.35  E-value=0.001  Score=44.66  Aligned_cols=69  Identities=17%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             ccccCCcEEEEEEEeccCCC----eEEEEEC--CEEe------cCC----------CceeeeeeeccCccccceEEEeec
Q psy16652        284 GQALQYDAILECHVEAYPPP----AIVWIKD--GVQI------MNN----------QHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~----~v~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      .+.+|++++|.|.+.|+...    .+.|++.  |+.+      ..+          .|+.++.   ........|.|.++
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~---D~s~~~~~L~i~sl   87 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSK---DTSNNQAFLNMMTV   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEE---EGGGTEEEEEECSC
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccc---cccceeEEcceeec
Confidence            35679999999999885432    4679872  2111      111          2333322   11112345899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy16652        342 ERRQFGQYACKAAN  355 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n  355 (384)
                      +.+|.+.|.|...-
T Consensus        88 ~~eDsAvYyCAr~~  101 (123)
T d1r0ah1          88 ETADTAIYYCAQSA  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccceEEeecccC
Confidence            99999999997543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00071  Score=44.79  Aligned_cols=69  Identities=14%  Similarity=0.286  Sum_probs=44.6

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.      +. .          ..|+.++.   ........|.|.+++
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~---D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTA---DRSSSIVYLQLNSLT   87 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEec---cCccceeeecccccC
Confidence            45779999999999986544  5889871  211      11 1          12444432   111123458899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jnhb1          88 SEDSAVYSCSRGR  100 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEEeecC
Confidence            9999999996543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00054  Score=45.86  Aligned_cols=69  Identities=10%  Similarity=0.306  Sum_probs=44.4

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|....  .+.|++.  |+.+      . .          .+|+.++.   ........|.|..++
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~---d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTV---DRSSTTAYIELVRLT   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeee---ccCcceEEccccccC
Confidence            35779999999999985433  5889872  2211      1 1          12333322   111223458899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        88 ~eDtA~YYCAr~~  100 (120)
T d1pg7x1          88 SNDSAVYYCARED  100 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCcceEEEeeecC
Confidence            9999999998653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00039  Score=45.80  Aligned_cols=83  Identities=10%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+......-..++.++|.|.+.+.  ....|.|.+++..   .  ...... ....++.|....       .|.|
T Consensus         4 s~PsV~~l~p~~~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~---~--~~~~~~-~~~~~g~ys~~S-------~L~v   70 (102)
T d1mjuh2           4 TAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLS---S--GVHTFP-AVLQSDLYTLSS-------SVTV   70 (102)
T ss_dssp             BCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBC---T--TEEECC-CEEETTEEEEEE-------EEEE
T ss_pred             cCCEEEEECCCccccCCCcEEEEEEEeeeeCCCeEEEECcCCcc---C--CeEecc-cccCCCCEEEEE-------EEEE
Confidence            34555433222223467899999999884  4678999654422   1  111111 123445555543       5777


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-.. +.+.|+|.+.+..
T Consensus        71 ~~~~w-~~~~ytC~V~H~~   88 (102)
T d1mjuh2          71 TSSTW-PSQSITCNVAHPA   88 (102)
T ss_dssp             CTTTT-TTSCCEEEEEEGG
T ss_pred             ehhHc-CCceEEEEEEECC
Confidence            66554 3578999998643

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.31  E-value=0.001  Score=45.06  Aligned_cols=68  Identities=15%  Similarity=0.339  Sum_probs=42.8

Q ss_pred             ccccCCcEEEEEEEeccCCC----eEEEEEC--CEEe------cC----------CCceeeeeeeccCccccceEEEeec
Q psy16652        284 GQALQYDAILECHVEAYPPP----AIVWIKD--GVQI------MN----------NQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~----~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      .+.+|+++.|.|.+.|+...    .+.|++.  |+.+      ..          ..|+.+..   ........|.|.++
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~---d~s~~t~~L~i~~l   87 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK---DTSSNQVFLKITSV   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec---ccCCcEEEcceecc
Confidence            35679999999999985432    4678861  1111      00          12333332   11112356999999


Q ss_pred             CCCCCeEEEEEEE
Q psy16652        342 ERRQFGQYACKAA  354 (384)
Q Consensus       342 ~~~d~G~Y~C~a~  354 (384)
                      +.+|.+.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999754

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00043  Score=45.81  Aligned_cols=71  Identities=14%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             eccCcEEEEEEeec-CC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652         85 DIAQTADLKCSVQY-AD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE  162 (384)
Q Consensus        85 ~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  162 (384)
                      ..+..++|.|.+.+ .| ...|.|++++........    .......++.|....       .|.|..-.......|+|+
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~----~~~~~~~~~~y~~~S-------~L~v~~~~w~~~~~ytC~   87 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS----TASTTQEGELASTQS-------ELTLSQKHWLSDRTYTCQ   87 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE----EEEEEEETTEEEEEE-------EEEEEHHHHHTTCCEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCce----eeeEeCCCCeEEEEE-------EEEECHHHcCCCCEEEEE
Confidence            44567999999988 34 558999998765332111    011122334444433       577765544445689999


Q ss_pred             EEEc
Q psy16652        163 VIIS  166 (384)
Q Consensus       163 ~~~~  166 (384)
                      +.+.
T Consensus        88 V~H~   91 (104)
T d1o0va1          88 VTYQ   91 (104)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9854

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0011  Score=39.70  Aligned_cols=58  Identities=17%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             eeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         84 KDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        84 v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      ...|..+.|.|....+.  ...-.|.|+++.+..               ++      .......+.|..  .+|+|.|.|
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~e---------------d~------~~~~~tey~V~~--~D~SGeY~C   65 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE---------------DA------LPGQKTEFKVDS--DDQWGEYSC   65 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEEC---------------TT------CCCSEEEEEECG--GGCCEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccc---------------cC------CCCCceEEEEec--CCCCceEEE
Confidence            35788999999997653  445789998876321               11      022233466654  789999999


Q ss_pred             EEE
Q psy16652        162 EVI  164 (384)
Q Consensus       162 ~~~  164 (384)
                      ..-
T Consensus        66 VFl   68 (80)
T d3b5ha2          66 VFL   68 (80)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            975

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.30  E-value=0.0013  Score=44.52  Aligned_cols=69  Identities=12%  Similarity=0.293  Sum_probs=44.6

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|+|.++|+...  .+.|++.  |+.      +. .          ..|+.++.   ........|.|.+++
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSr---D~s~~t~yL~i~~L~   87 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISR---DNAKNTLYLQMNSLK   87 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEE---CTTTCCEEEEEESCC
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEec---cCCCceeEecEeeeC
Confidence            35789999999999986544  5888872  211      11 1          12333332   111233458899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (135)
T d1ieha_          88 SEDTAVYYCAKYS  100 (135)
T ss_dssp             SSSCEEEEEEEBS
T ss_pred             cccceeeEEEEec
Confidence            9999999997543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00083  Score=43.47  Aligned_cols=28  Identities=14%  Similarity=0.306  Sum_probs=22.2

Q ss_pred             ccCcEEEEEEeecC--CCccEEEEEeCCCC
Q psy16652         86 IAQTADLKCSVQYA--DDYPVIWMKMDTAK  113 (384)
Q Consensus        86 ~g~~v~l~C~~~~~--~~~~v~W~~~~~~~  113 (384)
                      .++.++|.|.+.+.  ....|+|.+++...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~   43 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQ   43 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEc
Confidence            45689999999884  46789999988653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.28  E-value=0.00096  Score=44.29  Aligned_cols=69  Identities=14%  Similarity=0.247  Sum_probs=44.0

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ecC-----------CCceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IMN-----------NQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|+|.++|+..-  .+.|++.  |+.      +..           ..++.+..   +.......|.|.++
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~---D~s~~t~yL~i~~L   86 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTV---DTSSSTAYMQFSSL   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEE---EGGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEe---cCccceEEeccccc
Confidence            345779999999999985543  5888771  211      111           12333332   11123345889999


Q ss_pred             CCCCCeEEEEEEE
Q psy16652        342 ERRQFGQYACKAA  354 (384)
Q Consensus       342 ~~~d~G~Y~C~a~  354 (384)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (118)
T d1ct8b1          87 TTEDSAIYYCARY   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence            9999999999654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.28  E-value=0.00074  Score=45.39  Aligned_cols=69  Identities=14%  Similarity=0.368  Sum_probs=44.5

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-CC----------CceeeeeeeccCccccceEEEeecCC
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-NN----------QHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+|+++.|.|.++|+...  .+.|++.  |+.      +. .+          .|+.++.   +.......|.|++++.
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~---D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1          12 VQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISR---DNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEE---ETTTTEEEEEECSCCG
T ss_pred             ECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEec---cCCCcEEEeeeeeecc
Confidence            5779999999999986543  5888872  211      11 11          2333332   1112334588999999


Q ss_pred             CCCeEEEEEEEeC
Q psy16652        344 RQFGQYACKAANK  356 (384)
Q Consensus       344 ~d~G~Y~C~a~n~  356 (384)
                      +|.+.|.|.....
T Consensus        89 eDtavYYCAr~~~  101 (126)
T d1dfbh1          89 EDMALYYCVKGRD  101 (126)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             CcceEEEEEeccC
Confidence            9999999976543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.28  E-value=0.0014  Score=43.54  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=44.4

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEE--CCEEe------cC-------------CCceeeeeeeccCccccceEEEee
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIK--DGVQI------MN-------------NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~--~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      .+.+|+++.|.|.++|....  .+.|++  .|+.+      ..             ..|+.++.   ........|.|.+
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~---D~s~n~~~L~~~~   87 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISR---DDSKRRVYLQMNT   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEE---ETTTTEEEEEECS
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeec---ccccceeccceee
Confidence            35779999999999986444  688987  23211      00             02333332   1112234588999


Q ss_pred             cCCCCCeEEEEEEEe
Q psy16652        341 IERRQFGQYACKAAN  355 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~n  355 (384)
                      ++.+|.+.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999996544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.27  E-value=0.00065  Score=45.38  Aligned_cols=70  Identities=10%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             CcccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEee
Q psy16652        282 RQGQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVIT  340 (384)
Q Consensus       282 ~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~  340 (384)
                      ...+.+|+++.|.|.++|...-  .+.|++.  |+.      +. .          ..|+.++.   +.......|.|.+
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~---D~s~ntvyL~~~~   86 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR---DTSATTAYMGLSS   86 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEE---ETTTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEec---cCCcceeeecccc
Confidence            3446889999999999986544  5888872  211      11 1          12333332   1111234588999


Q ss_pred             cCCCCCeEEEEEEE
Q psy16652        341 IERRQFGQYACKAA  354 (384)
Q Consensus       341 ~~~~d~G~Y~C~a~  354 (384)
                      ++.+|.+.|.|...
T Consensus        87 L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          87 LRPEDTAVYYCARD  100 (122)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999765

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0023  Score=41.98  Aligned_cols=73  Identities=14%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             eccCcEEEEEEeecC-C-C-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652         85 DIAQTADLKCSVQYA-D-D-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC  161 (384)
Q Consensus        85 ~~g~~v~l~C~~~~~-~-~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (384)
                      ..++.++|.|.+.+. | . ..+.|.+++.....     .........++.|....       .|.|..........|+|
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~-----~~~~~~~~~~gtys~~S-------~L~v~~~~W~~~~~ytC   84 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITT-----VNFPPALASGGRYTMSN-------QLTLPAVECPEGESVKC   84 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEE-----EECCCEECSSSCEEEEE-------EEEECGGGSCTTCEEEE
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCce-----eEeeeEecCCCCEEEEE-------EEEEeHHHccCCCEEEE
Confidence            457889999999884 3 3 46788887654211     11111223344555444       57776665555558999


Q ss_pred             EEEEccCc
Q psy16652        162 EVIISLNN  169 (384)
Q Consensus       162 ~~~~~~~~  169 (384)
                      ++.+....
T Consensus        85 ~V~H~s~~   92 (102)
T d2fbjh2          85 SVQHDSNP   92 (102)
T ss_dssp             EEEETTSC
T ss_pred             EEEECCCC
Confidence            99865443

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00026  Score=45.52  Aligned_cols=90  Identities=10%  Similarity=0.031  Sum_probs=0.0

Q ss_pred             CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652         73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ  152 (384)
Q Consensus        73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  152 (384)
                      +.....++-+.+.+|+++.+.|.++........|...++.               ...+...+.-++..+   +.|.+++
T Consensus         6 ~~~~~~p~~V~v~eg~~~vIPC~vT~P~~~VtL~~~~~~~---------------~~p~g~~v~~Dpk~G---f~I~~~~   67 (95)
T d1fltx_           6 EMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDT---------------LIPDGKRIIWDSRKG---FIISNAT   67 (95)
T ss_dssp             SCCCSSCEEEEECTTSCEEECCCBSCTTSCCEEEETTTEE---------------ECCCSSSEEEETTTE---EEESSCC
T ss_pred             cCCCCCCCEEEEeCCCCEEEEccCCCCCceeEEEeccCCc---------------cCCCCCEEEECCCCC---EEEeCCC


Q ss_pred             CCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652        153 ETDAGIYKCEVIISLNNKVSAEVELIVR  180 (384)
Q Consensus       153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  180 (384)
                      ..|.|.|.|.+..+.....+.-+.....
T Consensus        68 ~~~~g~y~C~a~~~g~~~~S~yl~~r~~   95 (95)
T d1fltx_          68 YKEIGLLTCEATVNGHLYKTNYLTHRQT   95 (95)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             cccCeEEEEEEEECCEEEEEEEEEEeCC

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.26  E-value=0.00024  Score=44.98  Aligned_cols=63  Identities=8%  Similarity=0.110  Sum_probs=38.4

Q ss_pred             CcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652        289 YDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG  358 (384)
Q Consensus       289 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  358 (384)
                      ..++|.|.+.|+.+.  .|.|.++|..+......  .....+   ....+.+..  ......|+|.+.....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~--~~~~~g---tys~~s~~~--~~~~~~yTC~V~H~~~   78 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAI--VISPSG---KYNAVKLGK--YEDSNSVTCSVQHDNK   78 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEE--EECTTS---SEEEEEEEE--ETTTTTCEEEEEETTE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEe--eeccCC---cEEEEEEEe--cCCCCEEEEEEEECCc
Confidence            456899999995444  79999999877544321  111111   122233333  3445579999998753

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.26  E-value=0.00062  Score=45.36  Aligned_cols=68  Identities=13%  Similarity=0.308  Sum_probs=44.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.      +. .          ..|+.++.   +...+...|.|.+++
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSr---D~s~nt~yLqm~sL~   87 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITA---DTSTDTGYLELSSLR   87 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEec---ccCceEEEeeeeccC
Confidence            35779999999999986544  5888872  211      11 1          12433332   111233458899999


Q ss_pred             CCCCeEEEEEEE
Q psy16652        343 RRQFGQYACKAA  354 (384)
Q Consensus       343 ~~d~G~Y~C~a~  354 (384)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.25  E-value=0.00067  Score=45.87  Aligned_cols=70  Identities=9%  Similarity=0.221  Sum_probs=45.2

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|+|.++|+...  .+.|++.  |+.+      . .          ..|+.++.   ........|.|.++
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~---D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTA---DQATSTAYMELTNL   85 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEec---cCCccEEEEEeecc
Confidence            346789999999999986443  5888872  2111      0 1          12433332   11122345889999


Q ss_pred             CCCCCeEEEEEEEe
Q psy16652        342 ERRQFGQYACKAAN  355 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n  355 (384)
                      +.+|.+.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.25  E-value=0.00046  Score=45.54  Aligned_cols=68  Identities=16%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-CC----------CceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-NN----------QHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|+|.++|+...  .+.|++.  |+.      +. ..          .|+.++.   ........|.+.++
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~---D~s~~tvyL~~~sL   86 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTV---DTSSSTAYMQLSSL   86 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEec---ccccceeEeccccc
Confidence            446789999999999986544  5788871  211      11 11          2333332   11123345889999


Q ss_pred             CCCCCeEEEEEE
Q psy16652        342 ERRQFGQYACKA  353 (384)
Q Consensus       342 ~~~d~G~Y~C~a  353 (384)
                      +.+|.+.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (116)
T d1mjuh1          87 TSDDSAVYYCAN   98 (116)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEcc
Confidence            999999999964

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.25  E-value=5.4e-05  Score=51.00  Aligned_cols=82  Identities=13%  Similarity=0.235  Sum_probs=42.0

Q ss_pred             CeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeee--eccCccccceEEEeecCCCCCeEE
Q psy16652        274 PVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHF--ATSDEFSDTSLRVITIERRQFGQY  349 (384)
Q Consensus       274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y  349 (384)
                      |.+.+.++......++.++|.|.+.|+.+.  .|.|.+++..    ........  .++.+...+.|.|..-.+...-.|
T Consensus        13 P~V~l~~p~~~~~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~----~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y   88 (111)
T d1pfca_          13 PEVYLLPPPRNELSKKKVSLTCMITGFYPADINVEWDSSEPS----DYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESF   88 (111)
T ss_dssp             CCCCBCCCCSCCCCTTSCCEEEEEESCCSSCCEEESSSCCTT----TEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCC
T ss_pred             CEEEEECCCHHHhcCCceEEEEEEEeeECCCcEEEEeeCCCC----CcEEcccEECCCCcEEEEEEEEECHHHhCCCCEE
Confidence            444443333222345678999999985433  7999887731    11111111  111111222333333332224579


Q ss_pred             EEEEEeCCcc
Q psy16652        350 ACKAANKYGS  359 (384)
Q Consensus       350 ~C~a~n~~g~  359 (384)
                      +|.|.+....
T Consensus        89 tC~V~H~~l~   98 (111)
T d1pfca_          89 TCSVMHEALP   98 (111)
T ss_dssp             EEEEEETTTT
T ss_pred             EEEEEeCCCC
Confidence            9999997543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.24  E-value=0.00096  Score=45.53  Aligned_cols=69  Identities=13%  Similarity=0.297  Sum_probs=44.0

Q ss_pred             ccccCCcEEEEEEEeccCCC----eEEEEEC--CEEe------c----------CCCceeeeeeeccCccccceEEEeec
Q psy16652        284 GQALQYDAILECHVEAYPPP----AIVWIKD--GVQI------M----------NNQHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~----~v~W~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      .+.+|+++.|.|.++|....    .+.|++.  |+.+      .          -..|+.+..   +.......|.|.++
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~---d~s~~~~~L~i~~l   87 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITK---DTSKNQVVLVMTRV   87 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecc---cccccEEEcccccC
Confidence            35779999999999875432    4889872  1111      0          012333322   11112345999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy16652        342 ERRQFGQYACKAAN  355 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n  355 (384)
                      +.+|.+.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999997654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.24  E-value=0.00094  Score=44.40  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=44.6

Q ss_pred             ccccCCcEEEEEEEeccCCC---eEEEEE--CCEEe------cC----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP---AIVWIK--DGVQI------MN----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~---~v~W~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|+|.++|+...   .+.|+|  .|+.+      ..          ..|+.++.   +...+...|.+.+++
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~---D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITR---DTSKNQFFLQLNSVT   87 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEec---ccccceeeccccccc
Confidence            45689999999999997653   478877  22211      11          12333332   111223458899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1ncwh1          88 TEDTATYYCAGLL  100 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCceEEEEeEec
Confidence            9999999996543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.23  E-value=0.00066  Score=45.26  Aligned_cols=67  Identities=15%  Similarity=0.338  Sum_probs=42.8

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-CC----------CceeeeeeeccCccccceEEEeecCC
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-NN----------QHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+|+++.|.|.++|+...  .+.|++.  |+.      +. ..          .|+.++.   +.......|.|++++.
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~~t~yLq~~~L~~   88 (121)
T d2p49b1          12 VQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISR---DKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             EETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEEC---TTSTTEEEEEECSCCG
T ss_pred             ECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEee---cCCceEEEEEeeeccc
Confidence            4679999999999985444  5789872  211      11 11          1333321   1112234588999999


Q ss_pred             CCCeEEEEEEE
Q psy16652        344 RQFGQYACKAA  354 (384)
Q Consensus       344 ~d~G~Y~C~a~  354 (384)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999753

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.22  E-value=0.0015  Score=43.99  Aligned_cols=68  Identities=18%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             cccCCcEEEEEEEeccCC---CeEEEEEC--CEEe------cCC----------CceeeeeeeccCccccceEEEeecCC
Q psy16652        285 QALQYDAILECHVEAYPP---PAIVWIKD--GVQI------MNN----------QHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~---~~v~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+|+++.|.|.+.|+..   ..+.|+|.  |+.+      ..+          .|+.+..   +.......|.|..++.
T Consensus        12 vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~---d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1          12 VQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITR---DTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             ECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEE---ETTTTEEEEEECSCCG
T ss_pred             ECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeec---ccccceeecceecccc
Confidence            567999999999998654   25789872  3221      111          2333322   1112334589999999


Q ss_pred             CCCeEEEEEEEe
Q psy16652        344 RQFGQYACKAAN  355 (384)
Q Consensus       344 ~d~G~Y~C~a~n  355 (384)
                      +|.+.|.|....
T Consensus        89 eDtAvYyCAr~~  100 (127)
T d3cx5j1          89 EDTATYYCARSE  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEeeeec
Confidence            999999997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.22  E-value=0.0018  Score=42.85  Aligned_cols=70  Identities=10%  Similarity=0.256  Sum_probs=45.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------cCC----------CceeeeeeeccCccccceEEEeecCC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------MNN----------QHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      .+.+|+++.|.|.++|+...  .+.|++.  |+.+      ..+          .|+.++.   ........|.|++++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSr---D~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISR---DIVRNILTLQMSRLRS   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEE---ETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEec---cccceeeeeccccccC
Confidence            35789999999999986544  6889872  2111      111          2333332   1112234588999999


Q ss_pred             CCCeEEEEEEEeC
Q psy16652        344 RQFGQYACKAANK  356 (384)
Q Consensus       344 ~d~G~Y~C~a~n~  356 (384)
                      +|.+.|.|.....
T Consensus        88 eDtA~YyCAr~~~  100 (118)
T d1lo4h1          88 EDTAIYYCARGTS  100 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEecccCC
Confidence            9999999975544

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.22  E-value=0.00076  Score=45.18  Aligned_cols=69  Identities=10%  Similarity=0.298  Sum_probs=44.4

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeecCC
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+|+++.|+|.++|+..-  .+.|++.  |+.+      . .          ..|+.++.   ........|.|++++.
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSr---D~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1          12 VQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISR---DNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEE---EGGGTEEEEEECSCCG
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEec---cCCccEeEeeeeeecc
Confidence            4679999999999986543  5888872  1111      1 1          13444332   1111234588999999


Q ss_pred             CCCeEEEEEEEeC
Q psy16652        344 RQFGQYACKAANK  356 (384)
Q Consensus       344 ~d~G~Y~C~a~n~  356 (384)
                      +|.+.|.|.....
T Consensus        89 eDTAvYYCAr~~~  101 (122)
T d1bz7b1          89 EDTAIYYCTRGGT  101 (122)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCceEEEeecCCC
Confidence            9999999976543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.20  E-value=7.3e-05  Score=49.70  Aligned_cols=86  Identities=14%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             CCCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652         71 RTPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI  148 (384)
Q Consensus        71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  148 (384)
                      .+|.+.+.+....-..++.++|.|.+.+. | ...|.|.+++.........    ......++.|....       .|.|
T Consensus         4 ~~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~----~~~~~~~~tys~~S-------~l~v   72 (104)
T d1nfde2           4 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT----TKPSKQGQNYMTSS-------YLSL   72 (104)
T ss_dssp             BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC----CCCBCSSSCEEEEE-------BCCE
T ss_pred             cCCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEe----ccccCCCceEEEEE-------EEEE
Confidence            45666554333222246789999999883 3 5689999988653211110    11112334454443       4666


Q ss_pred             eecCCCCCeeEEEEEEEcc
Q psy16652        149 KEIQETDAGIYKCEVIISL  167 (384)
Q Consensus       149 ~~~~~~d~G~Y~C~~~~~~  167 (384)
                      ..-...+...|+|.+.+..
T Consensus        73 ~~~~w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          73 TADQWKSHNRVSCQVTHEG   91 (104)
T ss_dssp             EHHHHHTCSCEEEEEECTT
T ss_pred             cHHHcCCCCEEEEEEEECC
Confidence            5555555668999998543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00096  Score=44.70  Aligned_cols=70  Identities=11%  Similarity=0.239  Sum_probs=44.2

Q ss_pred             cccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-CC----------CceeeeeeeccCccccceEEEeec
Q psy16652        283 QGQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-NN----------QHYSVSHFATSDEFSDTSLRVITI  341 (384)
Q Consensus       283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~  341 (384)
                      ..+.+|+++.|.|.++|+...  .+.|++.  |+.+      . .+          .|+.+..   ....+...|.|.++
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~---D~s~~t~~L~i~~L   86 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLTSL   86 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEE---EGGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEe---ecCCceeeeccccc
Confidence            346789999999999885433  6889872  2211      0 11          1333321   11112345889999


Q ss_pred             CCCCCeEEEEEEEe
Q psy16652        342 ERRQFGQYACKAAN  355 (384)
Q Consensus       342 ~~~d~G~Y~C~a~n  355 (384)
                      +.+|.+.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1j05b_          87 TSEDTAVYYCAPFG  100 (121)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CcCcceEEEeEeec
Confidence            99999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.00074  Score=45.16  Aligned_cols=68  Identities=13%  Similarity=0.338  Sum_probs=43.6

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-C----------CCceeeeeeeccCccccceEEEeecCC
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-N----------NQHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+|+++.|.|.++|+...  .+.|++.  |+.      +. .          ..|+.+..   +.......|.|++++.
T Consensus        12 vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~---D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_          12 VQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISR---DNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEE---ETTTTEEEEEECSCCG
T ss_pred             ECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEec---cccceeEEeeeeeccc
Confidence            4679999999999985433  5788872  221      11 1          12333332   1112334689999999


Q ss_pred             CCCeEEEEEEEe
Q psy16652        344 RQFGQYACKAAN  355 (384)
Q Consensus       344 ~d~G~Y~C~a~n  355 (384)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1ol0a_          89 EDTAVYYCAREP  100 (121)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccceEEEEEEec
Confidence            999999997543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.19  E-value=0.0012  Score=44.46  Aligned_cols=70  Identities=10%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-----------CCCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-----------NNQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|+|.++|+...  .+.|++.  |+.+      .           ...|+.++.   ........|.|.+++
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~---D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITA---DKSTSTVYLELRNLR   87 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEee---cCCCceEEeeeeecc
Confidence            35789999999999986554  4778761  1111      0           113444432   111233458899999


Q ss_pred             CCCCeEEEEEEEeC
Q psy16652        343 RRQFGQYACKAANK  356 (384)
Q Consensus       343 ~~d~G~Y~C~a~n~  356 (384)
                      .+|.+.|.|.....
T Consensus        88 ~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          88 SDDTAVYFCAGVYE  101 (128)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             ccCceEEEEeEEec
Confidence            99999999987654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.18  E-value=0.0007  Score=45.88  Aligned_cols=68  Identities=16%  Similarity=0.303  Sum_probs=44.2

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CE--Eec----------C----------CCceeeeeeeccCccccceEEE
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GV--QIM----------N----------NQHYSVSHFATSDEFSDTSLRV  338 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~--~~~----------~----------~~~~~~~~~~~~~~~~~~~l~i  338 (384)
                      +.+|+++.|.|.++|+...  .+.|++.  |+  +..          .          ..|+.++..   .......|.|
T Consensus        12 vkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d---~s~~~~~L~i   88 (127)
T d1i3ua_          12 VQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRD---NAKNTVNLQM   88 (127)
T ss_dssp             CCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEE---GGGTEEEEEE
T ss_pred             ECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEecc---CCceEEEEee
Confidence            5679999999999986433  6889873  11  110          0          023333321   1123456899


Q ss_pred             eecCCCCCeEEEEEEEe
Q psy16652        339 ITIERRQFGQYACKAAN  355 (384)
Q Consensus       339 ~~~~~~d~G~Y~C~a~n  355 (384)
                      ++++.+|.+.|.|....
T Consensus        89 ~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCGGGCEEEEEEEES
T ss_pred             ecccccceeEEEEEEEe
Confidence            99999999999998653

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.18  E-value=0.00099  Score=44.90  Aligned_cols=68  Identities=15%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             cccCCcEEEEEEEeccCCC--eEEEEEC--CEE------ec-CC----------CceeeeeeeccCccccceEEEeecCC
Q psy16652        285 QALQYDAILECHVEAYPPP--AIVWIKD--GVQ------IM-NN----------QHYSVSHFATSDEFSDTSLRVITIER  343 (384)
Q Consensus       285 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~  343 (384)
                      +.+|+++.|+|.++|....  .+.|++.  |+.      +. ..          .|+.++.   ........|.|++++.
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~---D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1          11 VQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISL---DNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             ECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEE---EC--CEEEEEECSCCG
T ss_pred             ECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEe---cCCceEEEEEEeccCc
Confidence            5679999999999985444  5889872  211      11 11          2333332   1112234589999999


Q ss_pred             CCCeEEEEEEEe
Q psy16652        344 RQFGQYACKAAN  355 (384)
Q Consensus       344 ~d~G~Y~C~a~n  355 (384)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.15  E-value=0.0015  Score=43.81  Aligned_cols=69  Identities=17%  Similarity=0.297  Sum_probs=44.3

Q ss_pred             ccccCCcEEEEEEEeccCCC--eEEEEEC--CEEe------c-C----------CCceeeeeeeccCccccceEEEeecC
Q psy16652        284 GQALQYDAILECHVEAYPPP--AIVWIKD--GVQI------M-N----------NQHYSVSHFATSDEFSDTSLRVITIE  342 (384)
Q Consensus       284 ~~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~  342 (384)
                      .+.+|+++.|.|.++|....  .+.|++.  |+.+      . .          ..|+.++.   ........|.|++++
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~~t~~Lqm~sL~   87 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSR---DDLEDFVYLQMHKMR   87 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEec---cCccceEeeeeeccC
Confidence            35679999999999985433  5888872  2111      1 1          12333332   111234558899999


Q ss_pred             CCCCeEEEEEEEe
Q psy16652        343 RRQFGQYACKAAN  355 (384)
Q Consensus       343 ~~d~G~Y~C~a~n  355 (384)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997653