Psyllid ID: psy16653

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
ILPVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGGEK
Secondary Structure (PSIPRED)
cccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHcccccccccEEEEccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHEccccHcHHHHHHHHHHHHHHHHHHHcccEEEHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHcccccHHHHEHHHHHHHHHHHEEEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
ilpvtlnqlalpdggvgyeinfketRTVSIIvtpaqnmasderdNITLNMLqkegdaptYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVvpetpiylmksgnnkkAEVSLRFyrgsrydvpLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSndifksagstldpgfsyIQDSLismfdcipfqvkGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMvvpetkgkTLAQIQRELGGEK
Flexible Loop (DISEMBL)
ilpvtlnqlalpdggvGYEINFKETRTVSIIVtpaqnmasderDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIylmksgnnkkaeVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMvvpetkgktLAQIQRELGGEK
Low Complexity Region (SEG)
ILPVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPIlllvlfflvvPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIftvccvvgtvftfmvvPETKGKTLAQIQRELGGEK
Disordered region (IsUnstruct)
*****LNQLALPDGGVGYEINFKETRTVSIIVTPA**********ITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK***************
Disordered Region (DISOPRED)
ILPVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELA******************LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELG***
Disordered Region (DISEMBL)
ILPVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA**********LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQI********
Disordered Region (DISPRO)
ILPVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGG**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ILPVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGGEK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
B4QBN2	857	Facilitated trehalose tra	N/A	N/A	0.694	0.243	0.334	6e-22
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.694	0.244	0.334	2e-21
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.578	0.356	0.359	3e-21
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.627	0.234	0.333	5e-21
Q291H8	868	Facilitated trehalose tra	no	N/A	0.491	0.170	0.405	6e-21
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.491	0.170	0.405	6e-21
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.491	0.172	0.398	7e-21
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.584	0.360	0.357	8e-21
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.491	0.186	0.411	9e-21
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.578	0.356	0.353	1e-20

>sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2

 Score =  105 bits (261), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 117/230 (50%), Gaps = 21/230 (9%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++++A    A+P+  L+L FL+ PETP + 
Sbjct: 521 PEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLI-PETPRWF 579

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS--SRANLRALI 174
           +  G  ++A  +L++ RG   DV  EL  + R   A A ++AS + ++    R NL+ L 
Sbjct: 580 VGRGLEERARKALKWLRGKEADVEPELKGLMRS-QADADRQASRNTMLELFKRINLKPLS 638

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMF---------DCIP 225
           ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++ F         D + 
Sbjct: 639 ISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLG 698

Query: 226 FQVKGIATGIAV--AVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVV 273
            ++    + IA+   ++ +G F      G  V H G     W+   C V+
Sbjct: 699 RKILLYISDIAMILTLSILGGFFYCKAHGPDVSHLG-----WLPLTCFVI 743

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Drosophila simulans (taxid: 7240)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 21/230 (9%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++++A    A+P+  L+L FL+ PETP + 
Sbjct: 520 PEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFLI-PETPRWY 578

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS--SRANLRALI 174
           +  G  ++A  +L + RG   DV  EL  + R   A A ++A+ + ++    R NL+ L 
Sbjct: 579 VSRGREERARKALTWLRGKEADVEPELKGLMRS-QADADRQATQNTMLELLKRNNLKPLS 637

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLIS---------MFDCIP 225
           ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++         + D   
Sbjct: 638 ISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRAG 697

Query: 226 FQVKGIATGIAVAVNW--IGAFLVTLCFGFLVRHFGSAATFWIFTVCCVV 273
            ++   A+ IA+ +    +G F      G  V H G     W+   C VV
Sbjct: 698 RKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLG-----WLPLTCFVV 742

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 7/181 (3%)

Query: 45  NITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLV 103
           +++L +   E   P     LG        +GIL  Y  G    ++++A    A+P+  L+
Sbjct: 140 SLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLI 199

Query: 104 LFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAI---QREIDAAARKKASF 160
           L  +++PETP + +  G  ++A  +L++ RG   DV  EL  +   Q E D+ AR+    
Sbjct: 200 LM-IIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQARRNTCL 258

Query: 161 SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISM 220
              +  R NL+ L ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++ 
Sbjct: 259 E--LFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNF 316

Query: 221 F 221
           F
Sbjct: 317 F 317

Fails to transport trehalose.

Drosophila simulans (taxid: 7240)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 110/219 (50%), Gaps = 30/219 (13%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++ +A    A+PI  L+L FL+ PETP + 
Sbjct: 470 PEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLI-PETPRWY 528

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARK--KASFSDLVSSRANLRALI 174
           +  G + +A  +L++ RG + DV  EL  I +    A R   +++  DL+  +ANL+ L+
Sbjct: 529 VSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMK-KANLKPLL 587

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATG 234
           ISLGLM FQQ SG+NAVIFY+  IF+ AGST+D                     + + T 
Sbjct: 588 ISLGLMFFQQLSGINAVIFYTVQIFQDAGSTID---------------------ENLCTI 626

Query: 235 IAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVV 273
           I   VN+I  F+ T+    L+   G     +I  V  ++
Sbjct: 627 IVGVVNFIATFIATM----LIDRLGRKMLLYISDVAMII 661

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLGL-STYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++++A    A+P+  L+L FL+ PETP + 
Sbjct: 532 PEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLI-PETPRWF 590

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS--SRANLRALI 174
           +  G  +KA  +L + RG   DV  EL  + R   A A ++A+ + ++    R NL+ L 
Sbjct: 591 VSRGREEKARKALSWLRGKEADVEPELKGLMRS-QADADRQATQNKMMELLKRNNLKPLS 649

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           ISLGLM FQQ SG+NAVIFY+  IFK AGST+D
Sbjct: 650 ISLGLMFFQQLSGINAVIFYTVSIFKDAGSTID 682

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLGL-STYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++++A    A+P+  L+L FL+ PETP + 
Sbjct: 533 PEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLI-PETPRWF 591

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS--SRANLRALI 174
           +  G  +KA  +L + RG   DV  EL  + R   A A ++A+ + ++    R NL+ L 
Sbjct: 592 VSRGREEKARKALSWLRGKEADVEPELKGLMRS-QADADRQATQNKMMELLKRNNLKPLS 650

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           ISLGLM FQQ SG+NAVIFY+  IFK AGST+D
Sbjct: 651 ISLGLMFFQQLSGINAVIFYTVSIFKDAGSTID 683

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++++A    A+P+  L+L FL+ PETP + 
Sbjct: 520 PEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLI-PETPRWF 578

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS--SRANLRALI 174
           +  G  ++A  +L + RG   DV  EL  + R   A A ++A+ + ++    R NL+ L 
Sbjct: 579 VSRGREERARKALSWLRGKEADVEPELKGLMRS-QADADRQATQNTMLELLKRNNLKPLS 637

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           ISLGLM FQQ SG+NAVIFY+  IFK AGST+D
Sbjct: 638 ISLGLMFFQQLSGINAVIFYTVQIFKDAGSTID 670

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score =  101 bits (251), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 3/179 (1%)

Query: 45  NITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLV 103
           +++L +   E   P     LG        +GIL  Y  G    ++++A    A+P+  L+
Sbjct: 140 SLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLI 199

Query: 104 LFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAI-QREIDAAARKKASFSD 162
           L  +++PETP + +  G  ++A  +L++ RG   DV  EL  + Q + DA  +   +   
Sbjct: 200 LM-IIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADRQATQNTCL 258

Query: 163 LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMF 221
            +  R NL+ L ISLGLM FQQFSG+NAVIFY+  IFK AGST+D   S I   +++ F
Sbjct: 259 ELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFF 317

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  100 bits (250), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 5/153 (3%)

Query: 58  PTYLSALGSFFQMFLTLGILYLYCLGLS-TYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116
           P     LG     F  +GIL  +  G    ++ +A    A+PI  L+L FL+ PETP + 
Sbjct: 457 PEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLI-PETPRWY 515

Query: 117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFS--DLVSSRANLRALI 174
           +      +A  +L++ RG + DV  EL  I +    A R  +S +  DL++ +ANL+ L+
Sbjct: 516 VSRNREDRARKALQWLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLN-KANLKPLL 574

Query: 175 ISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           ISLGLM FQQ SG+NAVIFY+  IF+SAGST+D
Sbjct: 575 ISLGLMFFQQLSGINAVIFYTVQIFQSAGSTID 607

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 7/181 (3%)

Query: 45  NITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLV 103
           +++L +   E   P     LG        +GIL  Y  G    ++++A    A+P+  L+
Sbjct: 140 SLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLI 199

Query: 104 LFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAI---QREIDAAARKKASF 160
           L  +++PETP + +  G  ++A  +L++ RG   DV  EL  +   Q E D+ A +    
Sbjct: 200 LM-IIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCL 258

Query: 161 SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISM 220
              +  R NL+ L ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++ 
Sbjct: 259 E--LFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNF 316

Query: 221 F 221
           F
Sbjct: 317 F 317

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
291461567	478	sugar transporter 4 [Nilaparvata lugens]	0.478	0.301	0.520	4e-35
242022756	466	sugar transporter, putative [Pediculus h	0.478	0.309	0.493	4e-31
357619298	500	hypothetical protein KGM_13187 [Danaus p	0.481	0.29	0.482	7e-31
195454052	507	GK14443 [Drosophila willistoni] gi|19417	0.491	0.291	0.493	3e-30
347969985	480	AGAP003492-PB [Anopheles gambiae str. PE	0.478	0.3	0.503	1e-29
347969989	492	AGAP003492-PA [Anopheles gambiae str. PE	0.478	0.292	0.503	2e-29
170054020	479	sugar transporter [Culex quinquefasciatu	0.498	0.313	0.450	3e-29
157126364	488	sugar transporter [Aedes aegypti]	0.478	0.295	0.462	2e-28
194898907	494	GG13076 [Drosophila erecta] gi|190650707	0.495	0.301	0.450	4e-28
195109120	508	GI23234 [Drosophila mojavensis] gi|19391	0.495	0.293	0.459	7e-28

>gi|291461567|dbj|BAI83418.1| sugar transporter 4 [Nilaparvata lugens]

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 108/146 (73%), Gaps = 2/146 (1%)

Query: 64  LGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNN 122
           LG+FFQ+ LT+GILY+Y +G L +Y+ + + C  VP++ ++LF +  P++P YL+K G  
Sbjct: 156 LGTFFQLMLTVGILYVYVVGTLFSYSSLQVLCGIVPVVFMLLF-VKAPDSPTYLLKKGRR 214

Query: 123 KKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVF 182
             AE +LR  RG  YD+  EL  IQ E+D A+R+K SF+  +  +A+L++L I+LGLM+F
Sbjct: 215 HDAEKALRLLRGPSYDIHAELNNIQYELDKASRQKVSFAKAIMKKASLKSLFIALGLMLF 274

Query: 183 QQFSGVNAVIFYSNDIFKSAGSTLDP 208
           QQFSGVNAVIFYS  IF++AGSTLDP
Sbjct: 275 QQFSGVNAVIFYSVSIFQAAGSTLDP 300

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022756|ref|XP_002431804.1| sugar transporter, putative [Pediculus humanus corporis] gi|212517136|gb|EEB19066.1| sugar transporter, putative [Pediculus humanus corporis]

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 4/148 (2%)

Query: 63  ALGSFFQMFLTLGILYLYCLG-LSTYTVIA-IGCLAVPILLLVLFFLVVPETPIYLMKSG 120
            LGS+FQ+ LT+GIL+ Y +G L  Y  +  I C+A  I L+ LFF+  PETP YL+   
Sbjct: 153 GLGSYFQLLLTIGILFSYLIGALVNYVWLGGISCIAPVIFLIALFFM--PETPFYLISKN 210

Query: 121 NNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLM 180
               AE SL++ RG+  +V LEL  I+ E+  AA+ K +F DL+S ++N+ AL+ISLGLM
Sbjct: 211 KKNLAEKSLKWLRGNLVNVELELNKIEVEVTEAAQNKGTFKDLISKKSNVNALVISLGLM 270

Query: 181 VFQQFSGVNAVIFYSNDIFKSAGSTLDP 208
           +FQQ  G+NAVIFY+ +IF+ AG+ LDP
Sbjct: 271 LFQQLCGINAVIFYAAEIFRIAGTDLDP 298

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619298|gb|EHJ71927.1| hypothetical protein KGM_13187 [Danaus plexippus]

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 63  ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGN 121
           +LGSFFQ+FLT+GIL+ + +G  + +  ++I     P+LL+ +F+ + PETP YL+    
Sbjct: 185 SLGSFFQLFLTVGILFTFVVGGWTHWRTLSIISAVFPVLLIAVFWWM-PETPQYLLGKNR 243

Query: 122 NKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMV 181
            + AE SLR+ RG   D+  EL  +Q+++D A+R+ A    +V+ RA L ALI SLGLM 
Sbjct: 244 RRDAERSLRWLRGPLADLSGELEEMQKDVDTASRQSAGILSMVTQRAPLMALICSLGLMF 303

Query: 182 FQQFSGVNAVIFYSNDIFKSAGSTLDP 208
           FQQFSG+NAVIFY+N+IF+SAGS + P
Sbjct: 304 FQQFSGINAVIFYTNNIFQSAGSNIPP 330

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454052|ref|XP_002074064.1| GK14443 [Drosophila willistoni] gi|194170149|gb|EDW85050.1| GK14443 [Drosophila willistoni]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 108/162 (66%), Gaps = 14/162 (8%)

Query: 57  APTYLS---------ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLV-LF 105
           AP Y+S          LG+ FQ+ LT+GIL++Y +G + ++T ++  CL VPILLLV +F
Sbjct: 179 APMYISEIAETSIRGTLGTLFQLLLTIGILFVYAVGSMVSWTTLSTLCLIVPILLLVGMF 238

Query: 106 FLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS 165
           FL  PETP+YL+K G    A +SL++  G   D    +  IQ ++D A    ASF DL S
Sbjct: 239 FL--PETPVYLLKKGRRADAALSLKWLWGRFCDSRSAIQIIQNDLDQAG-ADASFLDLFS 295

Query: 166 SRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           +R +L+ LIIS+ LM+FQQFSG+NAVIFY+  IF SAGSTLD
Sbjct: 296 NRGSLKGLIISMLLMLFQQFSGINAVIFYTVQIFDSAGSTLD 337

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969985|ref|XP_003436493.1| AGAP003492-PB [Anopheles gambiae str. PEST] gi|347969987|ref|XP_003436494.1| AGAP003492-PC [Anopheles gambiae str. PEST] gi|347969991|ref|XP_003436495.1| AGAP003492-PD [Anopheles gambiae str. PEST] gi|333466667|gb|EGK96332.1| AGAP003492-PB [Anopheles gambiae str. PEST] gi|333466668|gb|EGK96333.1| AGAP003492-PC [Anopheles gambiae str. PEST] gi|333466669|gb|EGK96334.1| AGAP003492-PD [Anopheles gambiae str. PEST]

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 103/147 (70%), Gaps = 3/147 (2%)

Query: 63  ALGSFFQMFLTLGILYLYCLGLSTYTV-IAIGCLAVPILLLVLFFLVVPETPIYLMKSGN 121
           ALG+FFQ+ LT+GIL++Y +G  T+ V ++I C   P+LL+V  F +VPE+P+YL+K G 
Sbjct: 167 ALGAFFQLHLTVGILFVYAVGSYTHWVTLSILCAIFPVLLIVAMF-IVPESPVYLVKKGR 225

Query: 122 NKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMV 181
              A V+L+++ G   D    L  IQ ++DAA+  +A  SDL ++  N  AL ISL LM 
Sbjct: 226 RIDAGVALKWFWGPNADTQSALQTIQSDLDAAS-GEAKVSDLFTNPTNRAALFISLLLMF 284

Query: 182 FQQFSGVNAVIFYSNDIFKSAGSTLDP 208
           FQQFSG+NAVIFY+  IF+SAGST+DP
Sbjct: 285 FQQFSGINAVIFYTAPIFQSAGSTMDP 311

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969989|ref|XP_309674.5| AGAP003492-PA [Anopheles gambiae str. PEST] gi|333466666|gb|EAA05397.6| AGAP003492-PA [Anopheles gambiae str. PEST]

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 103/147 (70%), Gaps = 3/147 (2%)

Query: 63  ALGSFFQMFLTLGILYLYCLGLSTYTV-IAIGCLAVPILLLVLFFLVVPETPIYLMKSGN 121
           ALG+FFQ+ LT+GIL++Y +G  T+ V ++I C   P+LL+V  F +VPE+P+YL+K G 
Sbjct: 179 ALGAFFQLHLTVGILFVYAVGSYTHWVTLSILCAIFPVLLIVAMF-IVPESPVYLVKKGR 237

Query: 122 NKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMV 181
              A V+L+++ G   D    L  IQ ++DAA+  +A  SDL ++  N  AL ISL LM 
Sbjct: 238 RIDAGVALKWFWGPNADTQSALQTIQSDLDAAS-GEAKVSDLFTNPTNRAALFISLLLMF 296

Query: 182 FQQFSGVNAVIFYSNDIFKSAGSTLDP 208
           FQQFSG+NAVIFY+  IF+SAGST+DP
Sbjct: 297 FQQFSGINAVIFYTAPIFQSAGSTMDP 323

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054020|ref|XP_001862938.1| sugar transporter [Culex quinquefasciatus] gi|167874408|gb|EDS37791.1| sugar transporter [Culex quinquefasciatus]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 108/162 (66%), Gaps = 12/162 (7%)

Query: 57  APTYLS---------ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFF 106
           AP Y+S         ALG+FFQ+FLT+GIL++Y +G   ++ ++++ C   P LL+V  F
Sbjct: 152 APMYISEFAEISIRGALGAFFQLFLTVGILFVYAIGPYVSWVLLSVMCAVFPALLIVAMF 211

Query: 107 LVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSS 166
            +VPE+P YL+K+G   +A V+L+++ G   +    + AIQ ++D A + +A  SDL + 
Sbjct: 212 -IVPESPTYLVKTGRRSEAAVALKWFWGPNCNTQNAVEAIQSDLD-AVKGEAKVSDLFTK 269

Query: 167 RANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDP 208
             N  AL I+L LM FQQFSG+NAVIFY+  IF+SAGST+DP
Sbjct: 270 AVNRNALFIALLLMFFQQFSGINAVIFYTVPIFQSAGSTMDP 311

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126364|ref|XP_001660877.1| sugar transporter [Aedes aegypti]

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 3/147 (2%)

Query: 63  ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGN 121
           ALG+FFQ+FLT+GIL++Y +G  +++T +++ C   P+LL+V  F +VPE+P YL+K G 
Sbjct: 175 ALGAFFQLFLTVGILFVYAVGPYTSWTTLSVLCAIFPVLLIVAMF-IVPESPTYLVKQGR 233

Query: 122 NKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMV 181
              A  +L+++ G   +    +  IQ ++D A + +A  SDL +   N  AL I+L LM 
Sbjct: 234 RSDAAAALKWFWGPNCNTQNAVETIQADLD-AVKGEAKVSDLFTKATNRNALFIALLLMF 292

Query: 182 FQQFSGVNAVIFYSNDIFKSAGSTLDP 208
           FQQFSG+NAVIFY+  IF+SAGST+DP
Sbjct: 293 FQQFSGINAVIFYTVPIFQSAGSTMDP 319

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194898907|ref|XP_001979004.1| GG13076 [Drosophila erecta] gi|190650707|gb|EDV47962.1| GG13076 [Drosophila erecta]

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 13/162 (8%)

Query: 57  APTYLS---------ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFF 106
           AP Y+S         +LG+ FQ+ LT+GIL++Y +G L ++  +++ CLA+PILLL   F
Sbjct: 169 APMYISEIAETSIRGSLGTLFQLLLTIGILFIYVVGALVSWKTLSMLCLAIPILLLFGLF 228

Query: 107 LVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSS 166
            +VPETP+YL+K G   +A  +L++  G   +    + A Q ++D      AS  DL S+
Sbjct: 229 -IVPETPVYLLKRGKRSEANRALKWLWGDYCNTSSAIQAFQNDLDQTG-ADASVKDLFSN 286

Query: 167 RANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDP 208
           RA+   ++IS+ LMVFQQFSG+NAVIF+ N+IFKS+ STLDP
Sbjct: 287 RASRNGMVISVLLMVFQQFSGINAVIFFMNEIFKSS-STLDP 327

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109120|ref|XP_001999138.1| GI23234 [Drosophila mojavensis] gi|193915732|gb|EDW14599.1| GI23234 [Drosophila mojavensis]

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 12/161 (7%)

Query: 57  APTYLS---------ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPILLLVLFF 106
           AP Y+S          LG+ FQ+ LT+GIL++Y +G + ++T ++I CL VPI LLV   
Sbjct: 181 APMYISEIAETSIRGTLGTLFQLLLTMGILFIYVVGSMVSWTTLSILCLFVPIALLV-GM 239

Query: 107 LVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSS 166
           +++PETP+YL+K G   +A +SL++  G   D    +  IQ ++D      ASF DL ++
Sbjct: 240 VMLPETPVYLLKKGRRAEAALSLKWLWGRYCDSRSAIQVIQNDLDQTG-ADASFLDLFTN 298

Query: 167 RANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           R     LIIS+ LM FQQFSG+NAVIFY+  IFKSAGS+LD
Sbjct: 299 RGARNGLIISILLMFFQQFSGINAVIFYTESIFKSAGSSLD 339

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.478	0.311	0.370	4.4e-30
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.581	0.324	0.319	2.7e-29
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.534	0.329	0.363	1.1e-28
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.541	0.334	0.361	1.9e-28
UNIPROTKB|B4QBN2	857	Tret1-1 "Facilitated trehalose	0.581	0.204	0.35	3.1e-28
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.534	0.329	0.357	3.8e-28
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.631	0.408	0.309	4.3e-28
UNIPROTKB|B4P624	856	Tret1 "Facilitated trehalose t	0.534	0.188	0.361	5.2e-28
FB|FBgn0037387	491	CG1213 [Drosophila melanogaste	0.498	0.305	0.385	7.7e-28
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.601	0.224	0.344	9.2e-28

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
 Identities = 56/151 (37%), Positives = 84/151 (55%)

Query:    57 AP-TYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIA-IGCLAVPIXXXXXXXXXXPETP 113
             AP T+  AL +  Q+ +  G+   + +G L T+ V+A IG   +P           PE+P
Sbjct:   147 APKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGI--IPCAASFLGLFFIPESP 204

Query:   114 IYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR-KKASFSDLVSSRANLRA 172
              +L K G + + E +LR  RG + D+  E A IQ  I+   R  KA   DL   R  +R+
Sbjct:   205 RWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRY-IRS 263

Query:   173 LIISLGLMVFQQFSGVNAVIFYSNDIFKSAG 203
             ++I+ GLMVFQQF G+N + FY++ IF+ AG
Sbjct:   264 VLIAFGLMVFQQFGGINGICFYTSSIFEQAG 294

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
 Identities = 60/188 (31%), Positives = 103/188 (54%)

Query:    64 LGSFFQMFLTLGILYLYCLGLSTYTV-IAIGCLAVPIXXXXXXXXXXPETPIYLMKSGNN 122
             LGSFFQ+ +T+GIL++Y +G       ++I C  +P+          PE+P YL+    +
Sbjct:   215 LGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILPLIFGAIFFFM-PESPTYLVSKDRS 273

Query:   123 KKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR-KKASFSDLVSSRANLRALIISLGLMV 181
             + A  S+++ RG  YD   ELA + RE D   +  K +    ++     +AL IS+GLM 
Sbjct:   274 ENAIKSIQWLRGKEYDYEPELAEL-RETDRETKANKVNVWAALNRPVTRKALAISMGLMF 332

Query:   182 FQQFSGVNAVIFYSNDIFKSAGSTLDP-------GFSYIQDSLIS--MFDCIPFQVKGIA 232
             FQQ  G+NAVIFY++ IF  A + ++        G   +  + +S  + D +  ++  +A
Sbjct:   333 FQQVCGINAVIFYASRIFLEANTGIEAEWATILIGIMQVVATFVSTLVVDKLGRRILLLA 392

Query:   233 TGIAVAVN 240
             +GI++A++
Sbjct:   393 SGISMAIS 400

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 232 (86.7 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 61/168 (36%), Positives = 86/168 (51%)

Query:    58 PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPIXXXXXXXXXXPETPIYL 116
             P     LG        +GIL  Y  G    ++++A    A+P+          PETP + 
Sbjct:   153 PEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIII-PETPRWF 211

Query:   117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAI---QREIDAAARKKASFSDLVSSRANLRAL 173
             +  G  ++A  +L++ RG   DV  EL  +   Q E D+ AR+       +  R NL+ L
Sbjct:   212 VNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQARRNTCLE--LFKRINLKPL 269

Query:   174 IISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMF 221
              ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++ F
Sbjct:   270 SISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFF 317

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 228 (85.3 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
 Identities = 60/166 (36%), Positives = 86/166 (51%)

Query:    58 PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPIXXXXXXXXXXPETPIYL 116
             P     LG        +GIL  Y  G    ++++A    A+P+          PETP + 
Sbjct:   153 PEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIII-PETPRWF 211

Query:   117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAI-QREIDAAARKKASFSDLVSSRANLRALII 175
             +  G  ++A  +L++ RG   DV  EL  + Q + DA  +   +    +  R NL+ L I
Sbjct:   212 VNRGQEERARKALKWLRGKEADVEPELKELMQSQADADRQATQNTCLELFKRNNLKPLSI 271

Query:   176 SLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMF 221
             SLGLM FQQFSG+NAVIFY+  IFK AGST+D   S I   +++ F
Sbjct:   272 SLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFF 317

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)]

 Score = 233 (87.1 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
 Identities = 63/180 (35%), Positives = 95/180 (52%)

Query:    45 NITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPIXXXX 103
             +++L +   E   P     LG     F  +GIL  +  G    ++++A    A+P+    
Sbjct:   508 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLI 567

Query:   104 XXXXXXPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDL 163
                   PETP + +  G  ++A  +L++ RG   DV  EL  + R   A A ++AS + +
Sbjct:   568 LMFLI-PETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRS-QADADRQASRNTM 625

Query:   164 VS--SRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMF 221
             +    R NL+ L ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++ F
Sbjct:   626 LELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFF 685

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 228 (85.3 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 60/168 (35%), Positives = 85/168 (50%)

Query:    58 PTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPIXXXXXXXXXXPETPIYL 116
             P     LG        +GIL  Y  G    ++++A    A+P+          PETP + 
Sbjct:   153 PEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMIII-PETPRWF 211

Query:   117 MKSGNNKKAEVSLRFYRGSRYDVPLELAAI---QREIDAAARKKASFSDLVSSRANLRAL 173
             +  G  ++A  +L++ RG   DV  EL  +   Q E D+ A +       +  R NL+ L
Sbjct:   212 VNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLE--LFKRINLKPL 269

Query:   174 IISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMF 221
              ISLGLM FQQFSG+NAVIFY+  IFK AGST+D     I   +++ F
Sbjct:   270 SISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFF 317

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
 Identities = 65/210 (30%), Positives = 105/210 (50%)

Query:    46 ITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG--LSTYTVIAIGCLAVPIXXXX 103
             +T  M   E  A      +GSFFQ+ +  G+LY Y +G  L   T I I C  +P+    
Sbjct:   122 VTAPMYCTEITATALRGTIGSFFQLLIVSGVLYGYLVGAFLPLLT-INILCAILPVIFAI 180

Query:   104 XXXXXXPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAI----QREIDAAARKKAS 159
                   PE+P+YL   G N  A  +L++ RG   D+  EL  I    Q++ID     + +
Sbjct:   181 IHFFM-PESPVYLAMKGRNDDAAKALQWLRGKDADIDDELKEILEESQKQIDMP---QVN 236

Query:   160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGS-------TLDPGFSY 212
                 +     L+ L I++ L VFQQ++G+NAV+FYS  IF+  GS       TL  G + 
Sbjct:   237 ILSSLRRPIVLKGLGIAVLLQVFQQWTGINAVLFYSASIFEDTGSDISGSDATLIIGVTQ 296

Query:   213 IQDSLISM--FDCIPFQVKGIATGIAVAVN 240
             +  +L+++   D    ++  + +G+ +AV+
Sbjct:   297 VTSTLVAVAIIDKAGRRILLLISGVLMAVS 326

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)]

 Score = 224 (83.9 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 60/166 (36%), Positives = 89/166 (53%)

Query:    45 NITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPIXXXX 103
             +++L +   E   P     LG     F  +GIL  +  G    ++++A    A+P+    
Sbjct:   507 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLI 566

Query:   104 XXXXXXPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDL 163
                   PETP + +  G  ++A  +L + RG   DV  EL  + R   A A ++A+ + +
Sbjct:   567 LMFLI-PETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMRS-QADADRQATQNTM 624

Query:   164 VS--SRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
             +    R NL+ L ISLGLM FQQFSG+NAVIFY+  IFK AGST+D
Sbjct:   625 LELLKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTID 670

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 7.7e-28, Sum P(2) = 7.7e-28
 Identities = 59/153 (38%), Positives = 81/153 (52%)

Query:    63 ALGSFFQMFLTLGILYLYCLG-LSTYTVIAIGCLAVPIXXXXXXXXXXPETPIYLMKSGN 121
             A GS  Q+F+  GILY+Y +G   +Y  +   C+ VP+          PE+P +    G 
Sbjct:   176 ATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIVVPVVFDLVFYMM-PESPYFFAGKGR 234

Query:   122 NKKAEVSLRFYRG-SRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLM 180
               +A  SL+F RG S   V  E+A IQ  ++ A   K +  DL  +  N RAL I  GL+
Sbjct:   235 KSEALKSLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRALFICAGLI 294

Query:   181 VFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYI 213
              FQQ SG+N V+F S  IF SA + LDP  + I
Sbjct:   295 SFQQLSGINVVLFNSQSIFASANTGLDPAIATI 327

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 219 (82.2 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
 Identities = 64/186 (34%), Positives = 97/186 (52%)

Query:    25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG- 83
             T    ++V  A +  S    +++L +   E   P     LG     F  +GIL  +  G 
Sbjct:   437 THVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGK 496

Query:    84 LSTYTVIAIGCLAVPIXXXXXXXXXXPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLEL 143
                ++ +A    A+PI          PETP + +  G + +A  +L++ RG + DV  EL
Sbjct:   497 YMDWSGLAFLGAALPIPFLLLMFLI-PETPRWYVSRGRDDRARKALQWLRGKKADVDPEL 555

Query:   144 AAIQREIDAAAR--KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS 201
               I +    A R   +++  DL+  +ANL+ L+ISLGLM FQQ SG+NAVIFY+  IF+ 
Sbjct:   556 KGIIKSHQDAERHASQSAMLDLMK-KANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQD 614

Query:   202 AGSTLD 207
             AGST+D
Sbjct:   615 AGSTID 620

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	301
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-19
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-19
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-13
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-12
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-12
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	6e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	4e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 44/256 (17%)

Query: 55  GDAPTYLS---------ALGSFFQMFLTLGILYLYCLGLSTYTV-------IAIGCLAVP 98
              P Y+S         ALGS +Q+ +T GIL    +GL            I +G   VP
Sbjct: 120 VLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVP 179

Query: 99  ILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAA-ARKK 157
            +LL++  L +PE+P +L+  G  ++A   L   RG   DV  E+   +  ++ +   +K
Sbjct: 180 AILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEK 238

Query: 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSL 217
           AS+ +L   +   + L++ + L +FQQ +G+NA+ +YS  IF++ G  L           
Sbjct: 239 ASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG--LSDSL------- 289

Query: 218 ISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVF 277
                        + T I   VN    F+ T    FLV  FG      +      +  + 
Sbjct: 290 -------------LVTIIVGVVN----FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLV 332

Query: 278 TFMVVPETKGKTLAQI 293
             + +        A I
Sbjct: 333 LGVALLGVAKSKGAGI 348

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 85.9 bits (213), Expect = 8e-19
 Identities = 71/257 (27%), Positives = 107/257 (41%), Gaps = 46/257 (17%)

Query: 57  APTYLS---------ALGSFFQMFLTLGILYLYCLGLST----YTV---IAIGCLAVPIL 100
            P YLS         AL S +Q+ +T GIL  Y  G        T+   I +G   +P  
Sbjct: 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAG 207

Query: 101 LLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGS-----RYDVPLELAAIQREIDAAAR 155
           LL L    +PE+P +L+  G  ++A  SL   RG+          LEL  I+R I+  + 
Sbjct: 208 LLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSV 267

Query: 156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQD 215
           + +  S   S+R   R L + + L  FQQF+G+NA+++YS  IF++AG + D  F     
Sbjct: 268 QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF----- 322

Query: 216 SLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWI-FTVCCVVG 274
                          + + I  AVN+      T    FLV  FG      I      +  
Sbjct: 323 ---------------LVSIIVGAVNFAF----TFVAIFLVDRFGRRPLLLIGAAGMAICL 363

Query: 275 TVFTFMVVPETKGKTLA 291
            V   +      G + +
Sbjct: 364 FVLGILGASFVTGSSKS 380

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 35/176 (19%)

Query: 96  AVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR 155
           A+P LL ++    VPETP YLM  G  ++AE  LR   G+            +EI     
Sbjct: 201 AIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-----LATQALQEI----- 250

Query: 156 KKASFSDLVSSRANL---RALIISLGLM--VFQQFSGVNAVIFYSNDIFKSAGSTLDPG- 209
            K S      +   L      +I +G+M  VFQQF G+N V++Y+ +IFK+ G++ D   
Sbjct: 251 -KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309

Query: 210 ------------FSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF 253
                       F+ +    +  F   P Q+ G A G+A     IG F +   F  
Sbjct: 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG-ALGMA-----IGMFSLGTAFYT 359

Length = 479

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 225 PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284
           P  V+  A  IA A NW+  FL+   F  +         F +F    V+  +F F  VPE
Sbjct: 378 PLGVRPKAMAIATAANWLANFLIGFLFPIIT-GAIGGYVFLVFAGLLVLFILFVFFFVPE 436

Query: 285 TKGKTLAQIQREL 297
           TKG+TL +I    
Sbjct: 437 TKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 225 PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284
           P  ++     IAVA NW+  F+V   F  ++   G    F  F    V+G +F +  +PE
Sbjct: 413 PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472

Query: 285 TKGKTLAQI 293
           TKG+TL +I
Sbjct: 473 TKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)

Query: 176 SLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGI 235
           SLG   + Q  G+ A++     +F  A   +  G   +   L+S  +  P  ++G A  I
Sbjct: 352 SLGTAFYTQAPGIVALLSM---LFYVAAFAMSWG--PVCWVLLS--EIFPNAIRGKALAI 404

Query: 236 AVAVNWIGAFLVTLCF------GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKT 289
           AVA  WI  + V+  F       +LV HF +  ++WI+    V+  +F +  VPETKGKT
Sbjct: 405 AVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 464

Query: 290 LAQIQR 295
           L +++ 
Sbjct: 465 LEEMEA 470

Length = 479

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 222 DCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATF----------WIFTVCC 271
           +  P + +  A GI+ A    GA +    F +L +H      +           IF +  
Sbjct: 419 EVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFM 478

Query: 272 VVGTVFTFMVVPETKGKTLAQIQRE 296
            +G +FT ++ PETKGK+L ++  E
Sbjct: 479 FLGILFTLLI-PETKGKSLEELSGE 502

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%)

Query: 217 LISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTV 276
           L    +  P + +G A+G+      +G  L  L  G L+   G    F I     ++  +
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346

Query: 277 FTFMVV 282
              ++ 
Sbjct: 347 LLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 95  LAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSL-RFYRGSRYDVPLELAAIQREIDAA 153
           +++P  L  L    VPE+P +L+  G  ++A   L R  + +   +P E+ ++  E D +
Sbjct: 249 VSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLS 308

Query: 154 -ARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYS 195
            ++K+ SF DL  +  NLR   + L ++ F       A  +Y 
Sbjct: 309 SSKKQYSFLDLFRTP-NLRKTTLCLMMLWF-----TTAFSYYG 345

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG0569|consensus	485		100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
KOG0254|consensus	513		100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
KOG0253|consensus	528		99.96
TIGR00898	505	2A0119 cation transport protein.	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.94
KOG0255|consensus	521		99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
KOG0252|consensus	538		99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.89
PRK09952	438	shikimate transporter; Provisional	99.88
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.88
PRK11663	434	regulatory protein UhpC; Provisional	99.86
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.85
PRK12307	426	putative sialic acid transporter; Provisional	99.83
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.83
PRK03545	390	putative arabinose transporter; Provisional	99.83
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.82
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.82
KOG2532|consensus	466		99.82
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.82
TIGR00893	399	2A0114 d-galactonate transporter.	99.82
PRK15075	434	citrate-proton symporter; Provisional	99.81
TIGR00891	405	2A0112 putative sialic acid transporter.	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.79
PRK09705	393	cynX putative cyanate transporter; Provisional	99.79
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.78
PRK10489	417	enterobactin exporter EntS; Provisional	99.78
TIGR00895	398	2A0115 benzoate transport.	99.76
KOG2533|consensus	495		99.76
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.75
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.74
PRK03893	496	putative sialic acid transporter; Provisional	99.72
PRK05122	399	major facilitator superfamily transporter; Provisi	99.71
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.7
KOG1330|consensus	493		99.69
PRK12382	392	putative transporter; Provisional	99.68
PRK10091	382	MFS transport protein AraJ; Provisional	99.67
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.66
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.64
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.64
PRK09874	408	drug efflux system protein MdtG; Provisional	99.63
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.63
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.62
PLN00028	476	nitrate transmembrane transporter; Provisional	99.62
PRK03699	394	putative transporter; Provisional	99.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.61
PRK10504	471	putative transporter; Provisional	99.61
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.61
PRK11010	491	ampG muropeptide transporter; Validated	99.61
TIGR00900	365	2A0121 H+ Antiporter protein.	99.6
PRK03633	381	putative MFS family transporter protein; Provision	99.6
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.6
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.59
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.58
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.57
PRK11043	401	putative transporter; Provisional	99.57
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.56
PRK15011	393	sugar efflux transporter B; Provisional	99.56
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.56
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.54
TIGR00805	633	oat sodium-independent organic anion transporter.	99.52
PRK10054	395	putative transporter; Provisional	99.5
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.45
PRK11902	402	ampG muropeptide transporter; Reviewed	99.44
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.43
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.43
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.41
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.38
PRK10133	438	L-fucose transporter; Provisional	99.37
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.36
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.35
TIGR00901	356	2A0125 AmpG-related permease.	99.35
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.34
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.31
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.31
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.3
PTZ00207	591	hypothetical protein; Provisional	99.26
PRK09528	420	lacY galactoside permease; Reviewed	99.22
KOG3764|consensus	464		99.22
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.19
KOG2615|consensus	451		99.16
KOG2504|consensus	509		99.15
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.13
PRK10642	490	proline/glycine betaine transporter; Provisional	99.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.09
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.07
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.91
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.83
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.77
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.74
PRK09669	444	putative symporter YagG; Provisional	98.73
KOG3626|consensus	735		98.69
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.59
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.54
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.53
KOG4686|consensus	459		98.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.42
PRK10429	473	melibiose:sodium symporter; Provisional	98.36
PF13347	428	MFS_2: MFS/sugar transport protein	98.35
PRK11462	460	putative transporter; Provisional	98.24
KOG2325|consensus	488		98.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.18
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.16
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.15
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.14
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.12
PRK11663	434	regulatory protein UhpC; Provisional	98.1
PRK05122	399	major facilitator superfamily transporter; Provisi	98.09
PRK09848	448	glucuronide transporter; Provisional	98.08
TIGR00895	398	2A0115 benzoate transport.	98.07
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.06
PRK09528	420	lacY galactoside permease; Reviewed	98.03
PRK03545	390	putative arabinose transporter; Provisional	98.03
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.02
KOG2563|consensus	480		98.01
COG2211	467	MelB Na+/melibiose symporter and related transport	98.01
PRK12382	392	putative transporter; Provisional	98.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.95
TIGR00893	399	2A0114 d-galactonate transporter.	97.95
PLN00028	476	nitrate transmembrane transporter; Provisional	97.93
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.93
PRK10054	395	putative transporter; Provisional	97.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.92
PRK10504	471	putative transporter; Provisional	97.91
PRK09874	408	drug efflux system protein MdtG; Provisional	97.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.86
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.85
TIGR00900	365	2A0121 H+ Antiporter protein.	97.81
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.8
TIGR00891	405	2A0112 putative sialic acid transporter.	97.8
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.75
PRK15011	393	sugar efflux transporter B; Provisional	97.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.72
PRK12307	426	putative sialic acid transporter; Provisional	97.72
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.72
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.71
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.68
PRK10091	382	MFS transport protein AraJ; Provisional	97.67
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.62
PRK10489	417	enterobactin exporter EntS; Provisional	97.59
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.59
PRK03699	394	putative transporter; Provisional	97.57
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.57
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.56
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.54
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.54
PRK03893	496	putative sialic acid transporter; Provisional	97.51
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.51
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.5
TIGR00898	505	2A0119 cation transport protein.	97.49
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.44
PRK11043	401	putative transporter; Provisional	97.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.44
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.43
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.43
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.41
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.38
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.29
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.25
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.2
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.16
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.11
PRK11010	491	ampG muropeptide transporter; Validated	97.11
PRK11902	402	ampG muropeptide transporter; Reviewed	97.09
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.06
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.05
KOG3764|consensus	464		97.01
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.97
PRK15075	434	citrate-proton symporter; Provisional	96.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.96
TIGR00901	356	2A0125 AmpG-related permease.	96.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.94
KOG1330|consensus	493		96.94
PRK03633	381	putative MFS family transporter protein; Provision	96.81
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.73
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.67
PRK09705	393	cynX putative cyanate transporter; Provisional	96.66
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.65
PRK09952	438	shikimate transporter; Provisional	96.65
KOG2816|consensus	463		96.62
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.62
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.61
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.6
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.56
KOG2615|consensus	451		96.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.53
KOG3810|consensus	433		96.48
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.45
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.39
KOG0254|consensus	513		96.38
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.34
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.12
KOG2532|consensus	466		96.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.86
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.83
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.83
KOG2504|consensus	509		95.62
PTZ00207	591	hypothetical protein; Provisional	95.51
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.2
KOG2533|consensus	495		95.15
PRK09848	448	glucuronide transporter; Provisional	95.13
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.11
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.08
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.07
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.0
KOG0253|consensus	528		94.93
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.88
COG0477	338	ProP Permeases of the major facilitator superfamil	94.86
KOG3762|consensus	618		94.61
TIGR00805	633	oat sodium-independent organic anion transporter.	94.53
KOG3762|consensus	618		94.52
KOG0569|consensus	485		94.4
KOG0255|consensus	521		94.4
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.28
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.13
PRK10133	438	L-fucose transporter; Provisional	94.0
KOG2816|consensus	463		93.97
COG3202	509	ATP/ADP translocase [Energy production and convers	93.73
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.73
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	93.66
PRK11462	460	putative transporter; Provisional	92.64
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.59
KOG3098|consensus	461		92.05
TIGR00896	355	CynX cyanate transporter. This family of proteins	91.99
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	91.86
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.52
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.5
PF12832	77	MFS_1_like: MFS_1 like family	90.74
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	90.16
KOG2325|consensus	488		89.37
KOG0252|consensus	538		89.31
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	87.33
PF13347	428	MFS_2: MFS/sugar transport protein	86.82
PRK09669	444	putative symporter YagG; Provisional	85.07
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	82.29
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	81.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	81.69

>KOG0569|consensus

Probab=100.00  E-value=3.4e-40  Score=288.71  Aligned_cols=284  Identities=27%  Similarity=0.382  Sum_probs=249.7

Q ss_pred             ccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-------hh
Q psy16653         15 GVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-------TY   87 (301)
Q Consensus        15 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-------~W   87 (301)
                      ++....+...+.+..++++|++.|+.+|......+.|+.|.+|++.||....+.+.+..+|.+++..++..       .|
T Consensus       104 ~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W  183 (485)
T KOG0569|consen  104 ALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLW  183 (485)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcch
Confidence            34455556678899999999999999999999999999999999999999999999999999999888754       79


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHHHh-cCChHHHHHHHHHhcCCCCChHHHHHHHHH--HHHHHhhccchhhhhh
Q psy16653         88 TVIAIGCLAVPILLLVLFFLVVPETPIYLMK-SGNNKKAEVSLRFYRGSRYDVPLELAAIQR--EIDAAARKKASFSDLV  164 (301)
Q Consensus        88 r~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  164 (301)
                      ++.+.+..+++++.++... ++|||||||.. |||.+||++.++++|+++++.++..++.++  +.+.+++++.++++++
T Consensus       184 ~~l~~~~~i~~~~~l~~l~-~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~  262 (485)
T KOG0569|consen  184 PYLLAFPLIPALLQLALLP-FLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLL  262 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHh
Confidence            9999999999999999998 99999999987 899999999999999987443332222222  2222333677899999


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc--------
Q psy16653        165 SSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS--------  219 (301)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~--------  219 (301)
                      +++..|+...+++.+...+|++|.+.+.+|...++++.|++.+.....                 +.||++|        
T Consensus       263 ~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  263 KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL  342 (485)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            999999999999999999999999999999999999999986654433                 5666555        


Q ss_pred             --------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy16653        220 --------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTL  249 (301)
Q Consensus       220 --------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~  249 (301)
                                                                        .+|++|++.|+++.++...++|+.+++..+
T Consensus       343 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~  422 (485)
T KOG0569|consen  343 SLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF  422 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence                                                              999999999999999999999999999999


Q ss_pred             HHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhccC
Q psy16653        250 CFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGGE  300 (301)
Q Consensus       250 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~  300 (301)
                      .++++.+.+|. ..|+++.+.+.++.++.|.++||||+|+.+|+.++++++
T Consensus       423 ~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  423 AFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999998 789999999999999999999999999999999988765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=4.6e-39  Score=288.67  Aligned_cols=291  Identities=28%  Similarity=0.439  Sum_probs=245.4

Q ss_pred             ccccccccCccccchhhhhccC---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKET---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+.+.++..+..+++++.++++   +++.+.++|++.|++.|+..+..+.|+.|..|+++||+..++.+.+..+|.+++.
T Consensus        76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~  155 (451)
T PF00083_consen   76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS  155 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5577889999999999999999   9999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhccc-----h---hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653         81 CLGLS-----T---YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA  152 (301)
Q Consensus        81 ~i~~~-----~---Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
                      .++..     +   ||+.+.+..+++++.++... ++||||+|+..|+|.|||++.++++++.+.+ +++.++..++.++
T Consensus       156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~-~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~~  233 (451)
T PF00083_consen  156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRF-FLPESPRWLLSKGRDEEAEKVLRKLRGKEIE-DEEIEEIKAEKKE  233 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccceecccccccccccccccccccccc-ccccccccccccc
Confidence            87653     4   99999999999998888776 9999999999999999999999997766322 2222222222222


Q ss_pred             HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhh
Q psy16653        153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDS  216 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~  216 (301)
                      .++++.+++++++++.+++++.+.+.+...+++++.+.+.+|.+.++++.+.+.+ ....                +.|+
T Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  312 (451)
T PF00083_consen  234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDR  312 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            2222367888888876788888888888988899989999999999988877644 1111                2233


Q ss_pred             ccc----------------------------------------------------------ccccCCcchhhhHHHHHHH
Q psy16653        217 LIS----------------------------------------------------------MFDCIPFQVKGIATGIAVA  238 (301)
Q Consensus       217 v~~----------------------------------------------------------~~e~~p~~~R~~~~~~~~~  238 (301)
                      +++                                                          .+|++|++.|+++.|++..
T Consensus       313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~  392 (451)
T PF00083_consen  313 FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYA  392 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence            222                                                          7999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHh
Q psy16653        239 VNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQREL  297 (301)
Q Consensus       239 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~  297 (301)
                      ++++++++++.+.+.+.+..+....+.+++++++++.++.+++.||||++++||++++|
T Consensus       393 ~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  393 VGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            99999999999999998887755788899999999999999999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254|consensus

Probab=100.00  E-value=7.4e-34  Score=258.25  Aligned_cols=294  Identities=30%  Similarity=0.443  Sum_probs=249.9

Q ss_pred             cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653          5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      +.+.++..++.+|+++++++++...++++|++.|+|.|+...+.+.|++|++|++.||...+..+....+|.+++++++.
T Consensus       120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            37788889999999999999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             c------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHh---
Q psy16653         85 S------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRG-SRYDVPLELAAIQREIDAAA---  154 (301)
Q Consensus        85 ~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---  154 (301)
                      .      +||+.+.+..+++++..+..+ ++||||+|+.++|+.+++++.++++++ .+.+.+++.++++.....+.   
T Consensus       200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~-~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  278 (513)
T KOG0254|consen  200 GTSKVYAGWRIPLGLALIPAVILALGML-FLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA  278 (513)
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence            6      499999999999999999955 999999999999999999999999999 44555666655552221111   


Q ss_pred             hccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhhcc
Q psy16653        155 RKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDSLI  218 (301)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~v~  218 (301)
                      +.+..++++++ |..+++..+++.++.++|++|.+.+.+|.+++++..|...+.....                +.|+++
T Consensus       279 ~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~g  357 (513)
T KOG0254|consen  279 EGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFG  357 (513)
T ss_pred             cccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            12223556666 5588999999999999999999999999999999998875532221                445544


Q ss_pred             c-------------------------------------------------------------ccccCCcchhhhHHHHHH
Q psy16653        219 S-------------------------------------------------------------MFDCIPFQVKGIATGIAV  237 (301)
Q Consensus       219 ~-------------------------------------------------------------~~e~~p~~~R~~~~~~~~  237 (301)
                      +                                                             .+|++|.+.|+.+.+++.
T Consensus       358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~  437 (513)
T KOG0254|consen  358 RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV  437 (513)
T ss_pred             cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence            4                                                             799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHH-HhheecccCCCCCHHHHHHHhccC
Q psy16653        238 AVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTV-FTFMVVPETKGKTLAQIQRELGGE  300 (301)
Q Consensus       238 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~~~~~~~~~~  300 (301)
                      .++++.+.+....++.+.+..+....|..++..+.+..+ +.+++.||||++++||+++.+.++
T Consensus       438 ~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  438 AVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            999999999998888888776645678888888888777 789999999999999999987654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.98  E-value=1.9e-32  Score=248.76  Aligned_cols=286  Identities=18%  Similarity=0.189  Sum_probs=208.5

Q ss_pred             ccccccccCccccchhhhhccCC------eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETR------TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL   77 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~   77 (301)
                      |+.+.+++.++.+++++++++++      +..++++|+++|++.|+.++..+.|++|++|+++||+..++.+.+..+|.+
T Consensus        86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~  165 (502)
T TIGR00887        86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL  165 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            34666777888888888888776      678999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhcc----------------------------chhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChH-HHHHH
Q psy16653         78 YLYCLGL----------------------------STYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNK-KAEVS  128 (301)
Q Consensus        78 ~~~~i~~----------------------------~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~-~a~~~  128 (301)
                      +++.++.                            ++||++|.+.++++++..+..+ ++||||||+..|+|.+ ++.+.
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~-~lpESpr~l~~~~~~~~~a~~~  244 (502)
T TIGR00887       166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL-TIPETPRYTADVAKDVEQAASD  244 (502)
T ss_pred             HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHhCcchHHHHHH
Confidence            7775531                            1699999999999988877776 9999999999988874 57777


Q ss_pred             HHHhcCCCCC-hHHHHHHHHHHHHHHhhccchhhhhhccch---hHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCC
Q psy16653        129 LRFYRGSRYD-VPLELAAIQREIDAAARKKASFSDLVSSRA---NLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGS  204 (301)
Q Consensus       129 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  204 (301)
                      +++.++.+.+ ..++.++.++   +++..+.+++++++++.   +++.++.....++...+ .++....|.|.++++.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~  320 (502)
T TIGR00887       245 MSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGY  320 (502)
T ss_pred             HHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcC
Confidence            7777653221 1112111111   11111235777776431   22333333333333322 355677778999988877


Q ss_pred             CCCcc---------------hh-h-------------Hhhhccc------------------------------------
Q psy16653        205 TLDPG---------------FS-Y-------------IQDSLIS------------------------------------  219 (301)
Q Consensus       205 ~~~~~---------------~~-~-------------l~~~v~~------------------------------------  219 (301)
                      +.+..               .. .             +.|++++                                    
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  400 (502)
T TIGR00887       321 SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVL  400 (502)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            53210               00 0             3344333                                    


Q ss_pred             ----------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hCcchhHHHHHHHHHH
Q psy16653        220 ----------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH----------FGSAATFWIFTVCCVV  273 (301)
Q Consensus       220 ----------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~----------~~~~~~~~~~~~~~~~  273 (301)
                                      .+|++|++.|+++.|+.+.+++++++++|.+++++.+.          .+...++.++++++++
T Consensus       401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  480 (502)
T TIGR00887       401 AQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL  480 (502)
T ss_pred             HHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHH
Confidence                            68999999999999999999999999999999999874          3444578888888887


Q ss_pred             HHHHhheecccCCCCCHHHHHH
Q psy16653        274 GTVFTFMVVPETKGKTLAQIQR  295 (301)
Q Consensus       274 ~~~~~~~~~~et~~~~~~~~~~  295 (301)
                      +.++. +++|||+++++||+++
T Consensus       481 ~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       481 GILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHh-eEeccCCCCCHHhhhC
Confidence            76654 5679999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=7.3e-29  Score=224.29  Aligned_cols=289  Identities=26%  Similarity=0.385  Sum_probs=212.8

Q ss_pred             ccccccccCccccchhhhhcc---------CC---eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKE---------TR---TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMF   71 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~---------~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~   71 (301)
                      |+.+.++..+++++.+.++.+         ++   +..+++.|+++|++.|+..+....+++|++|+++||+.+++.+.+
T Consensus        85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077         85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            455666677777777766653         12   356789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-------------chhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCC
Q psy16653         72 LTLGILYLYCLGL-------------STYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYD  138 (301)
Q Consensus        72 ~~~G~~~~~~i~~-------------~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~  138 (301)
                      ..+|.+++++++.             .+||++|++.+++.++..+..+ ++||+|+|+..+++.+++++.+++.+..+ +
T Consensus       165 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~l~~s~~~l~~~~~~~~~~~~~~~~~~~~-~  242 (479)
T PRK10077        165 IIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGKQEQAEGILRKIMGNT-L  242 (479)
T ss_pred             HHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHcCCHHHHHHHHHHHcCCh-h
Confidence            9999998876532             2899999999999988877665 89999999988999999888888776543 2


Q ss_pred             hHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh------
Q psy16653        139 VPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY------  212 (301)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~------  212 (301)
                      ..++.++..+..++++..   .+..+..  ........+....+++..+.+...+|.|.+.++.|.+.+.....      
T Consensus       243 ~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  317 (479)
T PRK10077        243 ATQALQEIKHSLDHGRKT---GGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGV  317 (479)
T ss_pred             HHHHHHHHHHHHHHhhhh---hhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence            222222222221111111   1111111  11223333344455666677788889999988887764422211      


Q ss_pred             -----------Hhhhccc-----------------------------------------------------ccccCCcch
Q psy16653        213 -----------IQDSLIS-----------------------------------------------------MFDCIPFQV  228 (301)
Q Consensus       213 -----------l~~~v~~-----------------------------------------------------~~e~~p~~~  228 (301)
                                 +.|++++                                                     ++|.+|++.
T Consensus       318 ~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  397 (479)
T PRK10077        318 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  397 (479)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence                       3344332                                                     799999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH------HhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhcc
Q psy16653        229 KGIATGIAVAVNWIGAFLVTLCFGFLV------RHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGG  299 (301)
Q Consensus       229 R~~~~~~~~~~~~~~~~i~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~  299 (301)
                      |+++.|+.+.++++++++++.++|.+.      +++++...|.++++.++++.++.+++.||||++++||+++.+++
T Consensus       398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence            999999999999999999988887655      46777778888888888888888888999999999999988755

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=2.3e-29  Score=233.64  Aligned_cols=282  Identities=16%  Similarity=0.167  Sum_probs=215.6

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+.+++.++++++++++++++++.++++|++.|++.|+..++...+++|++|+++||+..++++.+..+|.++++.++
T Consensus       232 R~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la  311 (742)
T TIGR01299       232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA  311 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777888899999999999999999999999999999999999999999999999999999999999998887643


Q ss_pred             c-----------------c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCC----hHH
Q psy16653         84 L-----------------S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYD----VPL  141 (301)
Q Consensus        84 ~-----------------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~----~~~  141 (301)
                      .                 . +||+.+++.+++.++.+++.+ ++||||+|+..+|+.++|.+.++++++.|..    ..+
T Consensus       312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~-~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~  390 (742)
T TIGR01299       312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT-FMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEK  390 (742)
T ss_pred             HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhH
Confidence            1                 1 699999999998888777766 8999999999999999999999999876532    111


Q ss_pred             HH--HHHHHHHHHH-----h-hc------------------cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhH
Q psy16653        142 EL--AAIQREIDAA-----A-RK------------------KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYS  195 (301)
Q Consensus       142 ~~--~~~~~~~~~~-----~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  195 (301)
                      .+  +..+...+.+     + +.                  ..+++++|+.+ +++++++.+++|+...+ +++.+..|+
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~-~yygl~~w~  468 (742)
T TIGR01299       391 VFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSF-GYYGLSVWF  468 (742)
T ss_pred             HHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            11  1111100000     0 00                  01356677655 88899998888887766 489999999


Q ss_pred             HHHHHhc------------------------------------------CCCC--------------------C------
Q psy16653        196 NDIFKSA------------------------------------------GSTL--------------------D------  207 (301)
Q Consensus       196 ~~~~~~~------------------------------------------g~~~--------------------~------  207 (301)
                      |.+++..                                          |+..                    .      
T Consensus       469 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (742)
T TIGR01299       469 PDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKN  548 (742)
T ss_pred             HHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhc
Confidence            9886542                                          0000                    0      


Q ss_pred             -----------------------------------------cc------hh-h----------------Hhhhccc----
Q psy16653        208 -----------------------------------------PG------FS-Y----------------IQDSLIS----  219 (301)
Q Consensus       208 -----------------------------------------~~------~~-~----------------l~~~v~~----  219 (301)
                                                               ..      .. .                +.|++++    
T Consensus       549 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l  628 (742)
T TIGR01299       549 CTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML  628 (742)
T ss_pred             cchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence                                                     00      00 0                4555554    


Q ss_pred             --------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 --------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV  255 (301)
Q Consensus       220 --------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~  255 (301)
                                                                  ++|++|++.|+++.|+.+..+++|++++|++.+.+.
T Consensus       629 ~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       629 AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV  708 (742)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                        799999999999999999999999999999999887


Q ss_pred             HhhCcchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        256 RHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      +. +...++++.+++.++++++.++ +|||+++.+
T Consensus       709 ~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~l  741 (742)
T TIGR01299       709 GI-TKAAPILFASAALACGGLLALK-LPDTRGQVL  741 (742)
T ss_pred             Hh-hhHHHHHHHHHHHHHHHHHHHh-CCCCccccc
Confidence            65 4456777788877777766665 699998754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253|consensus

Probab=99.96  E-value=5.9e-28  Score=199.55  Aligned_cols=279  Identities=14%  Similarity=0.118  Sum_probs=209.8

Q ss_pred             cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653          5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      +.+.+.....++...+.+.++||..+.+.|.+.|+|.|+ +|+..++-.|..|..+|+..+-.. ..+.+|.++...++.
T Consensus       144 ~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law  221 (528)
T KOG0253|consen  144 KGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW  221 (528)
T ss_pred             hhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence            445566667778899999999999999999999999999 999999999999999999988877 899999999888876


Q ss_pred             c-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCC----------hHHHHHHHHHH
Q psy16653         85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYD----------VPLELAAIQRE  149 (301)
Q Consensus        85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~  149 (301)
                      .     ||||..+..++|..+.+...+ ++||||||+..+|+.++|.+.++|+.+.|..          ..++.++.+.+
T Consensus       222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~-w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~  300 (528)
T KOG0253|consen  222 GVMSNFGWRYLLFTSSTPLMFAARFLV-WVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESD  300 (528)
T ss_pred             HHHHhhhHHHHHHHHHhHHHHHHHHHh-hcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhc
Confidence            5     999999999988877777777 9999999999999999999999999876542          11111211111


Q ss_pred             HHH-----HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcC---CCCC----cchhh-----
Q psy16653        150 IDA-----AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAG---STLD----PGFSY-----  212 (301)
Q Consensus       150 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g---~~~~----~~~~~-----  212 (301)
                      ..+     .++......+++. |+.||.++....+|+...++ +++.......+++.-.   ....    .....     
T Consensus       301 ~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~  378 (528)
T KOG0253|consen  301 LDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPL  378 (528)
T ss_pred             hhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCc
Confidence            111     1223345566664 55888888877777765444 3333333333333211   0000    00000     


Q ss_pred             -------------------------Hhhhccc------------------------------------------------
Q psy16653        213 -------------------------IQDSLIS------------------------------------------------  219 (301)
Q Consensus       213 -------------------------l~~~v~~------------------------------------------------  219 (301)
                                               +.|++++                                                
T Consensus       379 s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvY  458 (528)
T KOG0253|consen  379 SVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVY  458 (528)
T ss_pred             cchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEe
Confidence                                     4455555                                                


Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      ..|+||+..|+++.|.+...+++|+++.|++.  +........+..+++.+++++.+..+++--|||+|++
T Consensus       459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             cCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99999999999999999999999999999888  4444455578889999999999999998889999874

>TIGR00898 2A0119 cation transport protein

Probab=99.96  E-value=2.3e-28  Score=222.50  Aligned_cols=278  Identities=17%  Similarity=0.204  Sum_probs=207.4

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+.++..+.+++.++.+++++++.+++.|++.|++.|+..+....++.|++|+++|++..++.+.+..+|.++++.++
T Consensus       157 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  236 (505)
T TIGR00898       157 KKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA  236 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cc--hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCCh-HHHHHHHH-HHHHHHhhccch
Q psy16653         84 LS--TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDV-PLELAAIQ-REIDAAARKKAS  159 (301)
Q Consensus        84 ~~--~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~  159 (301)
                      ..  +||+.|++.+++.++..+..+ ++||||+|+..+++.+++.+.+++..+.+... .++..+.+ ++..++++++.+
T Consensus       237 ~~~~~wr~~~~~~~i~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (505)
T TIGR00898       237 YFIPDWRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYS  315 (505)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCc
Confidence            76  899999999999988887776 89999999999999999999888876654321 11111111 111111122357


Q ss_pred             hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhhccc----
Q psy16653        160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDSLIS----  219 (301)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~v~~----  219 (301)
                      +++++++|..++.++.....++...+. ++....+.+    +.+.+  .....                +.|++++    
T Consensus       316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~  388 (505)
T TIGR00898       316 FLDLFRTPNLRKTTLCLMMLWFTTAFS-YYGLVLDLG----NLGGN--IYLDLFISGLVELPAKLITLLLIDRLGRRYTM  388 (505)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHH-HHHHhcccc----ccCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            788998886666665554444432221 222222222    11211  11000                2333322    


Q ss_pred             ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF  253 (301)
Q Consensus       220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~  253 (301)
                                                                    .+|++|++.|+++.|+.+.+++++++++|.+.+ 
T Consensus       389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-  467 (505)
T TIGR00898       389 AASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-  467 (505)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-
Confidence                                                          789999999999999999999999999999988 


Q ss_pred             HHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653        254 LVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ  292 (301)
Q Consensus       254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~  292 (301)
                      + +..+...++.+++++.+++.++.+ ++|||++++++|
T Consensus       468 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~  504 (505)
T TIGR00898       468 L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE  504 (505)
T ss_pred             H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence            3 445666788888888888776665 479999988764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.94  E-value=2.6e-25  Score=200.28  Aligned_cols=289  Identities=27%  Similarity=0.371  Sum_probs=211.7

Q ss_pred             cccccccccCccccchhhhhccCC---eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETR---TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      +|+.+.++..+++++.++.....+   ++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|.+++
T Consensus       100 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~  179 (481)
T TIGR00879       100 RKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA  179 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHH
Confidence            356667778888888888855443   44799999999999999999999999999999999999999999999999999


Q ss_pred             HHhc---cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHH---HHH
Q psy16653         80 YCLG---LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAA---IQR  148 (301)
Q Consensus        80 ~~i~---~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~  148 (301)
                      +.++   ..     +||+.|++.++..++..+..+ ++||+|+++..+++.+++.+..++..+.+.+..+..+.   ...
T Consensus       180 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (481)
T TIGR00879       180 YGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLF-FLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI  258 (481)
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHh-cCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            9988   32     999999997777776666665 89999999888888887777666655443222221111   111


Q ss_pred             HHHHH-hhccchhhhhhccch-hHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh--------------
Q psy16653        149 EIDAA-ARKKASFSDLVSSRA-NLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY--------------  212 (301)
Q Consensus       149 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~--------------  212 (301)
                      ....+ +..+..+.+.++... .+++.+....+..+.+..+.+.+.++.|.++++.|++.+.....              
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  338 (481)
T TIGR00879       259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFV  338 (481)
T ss_pred             HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            11111 111222334443211 23444554555555555556677888999988887764222111              


Q ss_pred             ---Hhhhcc----------------------------------c-------------------------ccccCCcchhh
Q psy16653        213 ---IQDSLI----------------------------------S-------------------------MFDCIPFQVKG  230 (301)
Q Consensus       213 ---l~~~v~----------------------------------~-------------------------~~e~~p~~~R~  230 (301)
                         +.|+++                                  .                         ..|.+|++.|+
T Consensus       339 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  418 (481)
T TIGR00879       339 AIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP  418 (481)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence               111110                                  1                         58999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653        231 IATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ  292 (301)
Q Consensus       231 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~  292 (301)
                      ++.++.+.+.++++++++.+.+.+.++.+++..|++.+++++++.++.+++.||+++++.++
T Consensus       419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            99999999999999999999999999989988999999999999988888899999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0255|consensus

Probab=99.93  E-value=5.2e-25  Score=201.08  Aligned_cols=285  Identities=15%  Similarity=0.060  Sum_probs=205.9

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |..+..++.+..++++.++++++++.+++.|++.|++.++...++..+++|+.++++|+....+....+..|.+..+..+
T Consensus       148 k~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a  227 (521)
T KOG0255|consen  148 KPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAA  227 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888899999999999999999999999999999999999999999999999999999995555555555555555


Q ss_pred             cc--hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCC---CChHHHHHHHHHHH-HHH--hh
Q psy16653         84 LS--TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSR---YDVPLELAAIQREI-DAA--AR  155 (301)
Q Consensus        84 ~~--~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~--~~  155 (301)
                      ..  +||+.+++..+++++.+++.+ +.||||||+..+||.+++.+.+++..+.|   .+..+......... .+.  .+
T Consensus       228 ~~~~~Wr~~~~~~~~~~~~~~~~~~-l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~  306 (521)
T KOG0255|consen  228 YITRDWRWLFWIISIPSGLFLLLWF-LPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTE  306 (521)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH-ccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccC
Confidence            55  899999999999999888854 77799999999999999999999987654   22222222221111 111  12


Q ss_pred             ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhhccc
Q psy16653        156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDSLIS  219 (301)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~v~~  219 (301)
                      ++..+.++++.|..+++++.....++..... +++..+.    ..+.  +.+.....                ..++.++
T Consensus       307 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~-y~gl~~~----~~~l--g~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR  379 (521)
T KOG0255|consen  307 PKISFLDLFRTPRLRYRTLYLLFIWFVFSLV-YYGLSLN----VSGL--GGNIYLNFTLSGLVELPAYFRNGLLLPEFGR  379 (521)
T ss_pred             CCCchhhhhcCHHHHHHHHHHHHHHHHHhHH-HHhhhhh----hhhc--CchHHHHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence            3356888999987788888777777532221 1111111    1111  11111110                1111111


Q ss_pred             ---------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy16653        220 ---------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVT  248 (301)
Q Consensus       220 ---------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~  248 (301)
                                                                         .+|++|+..|+++.+.+....+++++++|
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap  459 (521)
T KOG0255|consen  380 RPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAP  459 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                               89999999999999999999999999999


Q ss_pred             HHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHh
Q psy16653        249 LCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQREL  297 (301)
Q Consensus       249 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~  297 (301)
                      ++...... ......+.+++....+..++...++|||+++++.+-.++-
T Consensus       460 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~  507 (521)
T KOG0255|consen  460 LFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA  507 (521)
T ss_pred             HHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence            87654443 3333344446778888888887889999999986644433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=3.1e-25  Score=200.99  Aligned_cols=260  Identities=14%  Similarity=0.126  Sum_probs=181.8

Q ss_pred             ccccccccCccccchhhhhccCCeeE--------EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVS--------IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G   75 (301)
                      |+.+.+++.+++++++++++++++.+        +++.|+++|++.|+.++.+..+++|++|+++||+..++.+.+..+|
T Consensus        87 r~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G  166 (490)
T PRK10642         87 QKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAG  166 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            56788899999999999999999875        8899999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653         76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE  142 (301)
Q Consensus        76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  142 (301)
                      .+++..+.             .+|||+.|++.++++++..++.. .+||||+|...+++.++..       ++      .
T Consensus       167 ~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~-~~~esp~~~~~~~~~~~~~-------~~------~  232 (490)
T PRK10642        167 FVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRH-ALEETPAFQQHVDKLEQGD-------RE------G  232 (490)
T ss_pred             HHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHH-cCCCChhHHHHHHhhhhhc-------cc------c
Confidence            77765432             12899999998877776666655 8999999864332211100       00      0


Q ss_pred             HHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh---------
Q psy16653        143 LAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY---------  212 (301)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~---------  212 (301)
                               ..+.++.++++++++  +++.........+. ....++.+..|+|.++++ .|++.......         
T Consensus       233 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~  300 (490)
T PRK10642        233 ---------LQDGPKVSFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGML  300 (490)
T ss_pred             ---------ccccccCCHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                     000112345566653  23334433333232 223466778889998865 36553221111         


Q ss_pred             --------Hhhhccc---------------------------------------------------ccccCCcchhhhHH
Q psy16653        213 --------IQDSLIS---------------------------------------------------MFDCIPFQVKGIAT  233 (301)
Q Consensus       213 --------l~~~v~~---------------------------------------------------~~e~~p~~~R~~~~  233 (301)
                              +.|++++                                                   .+|++|++.|+++.
T Consensus       301 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~  380 (490)
T PRK10642        301 FVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSAL  380 (490)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence                    3344333                                                   67999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        234 GIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       234 ~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      |+.+..+++++.++|.+.+++.+..+ ++.++.+..+.++++.+..++ .||++++..
T Consensus       381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~~~  437 (490)
T PRK10642        381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCCCC
Confidence            99888888889999999999887654 455555555666666555544 699876544

>KOG0252|consensus

Probab=99.91  E-value=2.3e-25  Score=189.37  Aligned_cols=279  Identities=19%  Similarity=0.187  Sum_probs=199.2

Q ss_pred             ccCccccchhhhhccC-------CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653         10 ALPDGGVGYEINFKET-------RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus        10 ~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      .+.+..+++++++.+.       -.+++...|++.|+|.|+.||...+..+|.+-.++||...+..-....+|.+.+.++
T Consensus       120 ~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~iv  199 (538)
T KOG0252|consen  120 ELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIV  199 (538)
T ss_pred             HHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence            3444555565555432       234678899999999999999999999999999999999998777666666666655


Q ss_pred             ccc--------------------hhHHHHHHHHHHHHHHHHHHhcccccchhHHH-hcCChHHHHHHHHHhcCCCCChHH
Q psy16653         83 GLS--------------------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLM-KSGNNKKAEVSLRFYRGSRYDVPL  141 (301)
Q Consensus        83 ~~~--------------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~-~~~~~~~a~~~~~~~~~~~~~~~~  141 (301)
                      +..                    =||..|.+..+|+++++.-++ .+|||++|-. ..++.++|.+..+|....      
T Consensus       200 t~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~a~~d~~k~~~~------  272 (538)
T KOG0252|consen  200 ALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQAAGDMKKVLSV------  272 (538)
T ss_pred             HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhhhhhcccccccc------
Confidence            321                    499999999999999999988 9999999973 334444444221111111      


Q ss_pred             HHHHHHHHHHHHhhccc---hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh------
Q psy16653        142 ELAAIQREIDAAARKKA---SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY------  212 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~------  212 (301)
                      ++++.+........++.   .+...+... +-++++-.+..|+..... +|....+...++++.|+..+....-      
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA  350 (538)
T KOG0252|consen  273 DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHELFKVA  350 (538)
T ss_pred             ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHHHHHHH
Confidence            11110000000001111   133344333 446677777777776654 7788888899999887654443331      


Q ss_pred             --------------------Hhhhccc-----------------------------------------------------
Q psy16653        213 --------------------IQDSLIS-----------------------------------------------------  219 (301)
Q Consensus       213 --------------------l~~~v~~-----------------------------------------------------  219 (301)
                                          ++|.+++                                                     
T Consensus       351 ~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfiv  430 (538)
T KOG0252|consen  351 EGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIV  430 (538)
T ss_pred             HHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEe
Confidence                                3333333                                                     


Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-----HFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQ  294 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~  294 (301)
                      .+|.+|++.|+++.|+..+++..|++++...+.++.+     ..+.+.++++++.+++++.+..++ +||||++++||++
T Consensus       431 paE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei~  509 (538)
T KOG0252|consen  431 PAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEIS  509 (538)
T ss_pred             ehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccCHHHhc
Confidence            9999999999999999999999999999999999999     778888999999999988877766 7899999999987


Q ss_pred             HHhc
Q psy16653        295 RELG  298 (301)
Q Consensus       295 ~~~~  298 (301)
                      ++.+
T Consensus       510 ~e~~  513 (538)
T KOG0252|consen  510 NEEE  513 (538)
T ss_pred             Chhh
Confidence            6543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=3.1e-24  Score=181.44  Aligned_cols=263  Identities=11%  Similarity=0.049  Sum_probs=199.2

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      ||+.+.+++.+.++.+++.+++++...+.+.-+++|...|.-.|.....++.|+|++|||+..++++++-++|..+.+++
T Consensus        93 pr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~  172 (448)
T COG2271          93 PRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV  172 (448)
T ss_pred             CceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             c--cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhh
Q psy16653         83 G--LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR  155 (301)
Q Consensus        83 ~--~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
                      .  ..     +||..|+++++.++++.+..++.++|+|+-.   |-     .          +.++..++..+..+++++
T Consensus       173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL-----P----------~ie~~~~d~~e~~~~~~~  234 (448)
T COG2271         173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL-----P----------PIEEYRGDPLEIYEEEKE  234 (448)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC-----C----------CHHHhhcCchhhhhhhcc
Confidence            7  33     8999999999999999998887899999531   11     1          111111111111111111


Q ss_pred             cc-chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhh
Q psy16653        156 KK-ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDS  216 (301)
Q Consensus       156 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~  216 (301)
                      .+ .+.++.+.+...+++.+....+.........+.+..|.|.++.+. |++.......                 ++|+
T Consensus       235 ~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk  314 (448)
T COG2271         235 NEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK  314 (448)
T ss_pred             CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            11 344444433323333333333333333334789999999999886 6664443332                 4555


Q ss_pred             ccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHHH-
Q psy16653        217 LIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI-  242 (301)
Q Consensus       217 v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~-  242 (301)
                      +-+                                                     +.|..|.+.-|++.|+...++++ 
T Consensus       315 lfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~  394 (448)
T COG2271         315 LFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI  394 (448)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence            322                                                     99999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653        243 GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP  283 (301)
Q Consensus       243 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      |+..+....+++.|++||.+.|+++.+.++++.++......
T Consensus       395 Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         395 GAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             hHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            88888988999999999999999998888888877666554

>PRK09952 shikimate transporter; Provisional

Probab=99.88  E-value=3.6e-22  Score=178.47  Aligned_cols=249  Identities=10%  Similarity=0.060  Sum_probs=169.6

Q ss_pred             ccccccccCccccchhhhhccCCee--------EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTV--------SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G   75 (301)
                      |+.+.+++.+++++++++++++++.        .+++.|+++|++.|+.++....++.|++|+++||+..+..+.+..+|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            5667778889999999999999987        48889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653         76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE  142 (301)
Q Consensus        76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  142 (301)
                      .+++..+.             .++||+.|++.+++.++...+.. .+||||+|...+++.++.+                
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~-~~~es~~~~~~~~~~~~~~----------------  236 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRN-GMEESAEFEQQQHEQAAAK----------------  236 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHH-hCCCChhHHHHHhhccccc----------------
Confidence            98875442             13999999999988877666555 7899998753322111000                


Q ss_pred             HHHHHHHHHHHhhccchh-hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchh-h-------
Q psy16653        143 LAAIQREIDAAARKKASF-SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFS-Y-------  212 (301)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~-~-------  212 (301)
                                   ++.+. +.++++|..+   .......+. +..+.+....|.|.++++ .|.+...... .       
T Consensus       237 -------------~~~~~~~~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~  299 (438)
T PRK09952        237 -------------KRIPVIEALLRHPGAF---LKIIALRLC-ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLS  299 (438)
T ss_pred             -------------ccCCHHHHHHHchHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                         00011 1233333221   111111111 222345556666666644 3443221000 0       


Q ss_pred             ---------Hhhhccc----------------------------------------------------ccccCCcchhhh
Q psy16653        213 ---------IQDSLIS----------------------------------------------------MFDCIPFQVKGI  231 (301)
Q Consensus       213 ---------l~~~v~~----------------------------------------------------~~e~~p~~~R~~  231 (301)
                               +.||+++                                                    .+|.+|++.|++
T Consensus       300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t  379 (438)
T PRK09952        300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS  379 (438)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence                     3344322                                                    789999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhh--CcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        232 ATGIAVAVNW-IGAFLVTLCFGFLVRHF--GSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       232 ~~~~~~~~~~-~~~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      +.++.+..+. +++.++|.+.+++.+..  +|..++.+.+++++++.+..+. .+||++
T Consensus       380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~~~  437 (438)
T PRK09952        380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKDNQR  437 (438)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-cccccc
Confidence            9999877755 88999999999998854  3666666667777777666554 566543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.88  E-value=9.3e-22  Score=175.64  Aligned_cols=246  Identities=16%  Similarity=0.072  Sum_probs=167.0

Q ss_pred             cccccccccCccccchhhhhccCCee--------EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTV--------SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL   74 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~   74 (301)
                      .|+.+.+++.+++++++++++++++.        .+++.|+++|++.|+.++....+++|++|+++||+..++.+.+...
T Consensus        92 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~  171 (432)
T PRK10406         92 RKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIG  171 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHH
Confidence            36678889999999999999999875        4889999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHH
Q psy16653         75 GILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPL  141 (301)
Q Consensus        75 G~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  141 (301)
                      |.+++..+.             .+|||++|++.++++++..++.. .+||+|++.       +. +              
T Consensus       172 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~-~~~e~~~~~-------~~-~--------------  228 (432)
T PRK10406        172 GQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRR-QLDETSQQE-------TR-A--------------  228 (432)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHh-cCCCCchHH-------Hh-h--------------
Confidence            887776542             23899999999999888776665 789987531       00 0              


Q ss_pred             HHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh--------
Q psy16653        142 ELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY--------  212 (301)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~--------  212 (301)
                                  +++..+++++++++..   ... ..........+++.+..|+|.++.+ .|.+.+.....        
T Consensus       229 ------------~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~  292 (432)
T PRK10406        229 ------------LKEAGSLKGLWRNRRA---FIM-VLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF  292 (432)
T ss_pred             ------------hcccccHHHHHhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                        0011245566654421   111 1111222122356677888888765 45553221111        


Q ss_pred             ---------Hhhhccc----------------------------------------------------ccccCCcchhhh
Q psy16653        213 ---------IQDSLIS----------------------------------------------------MFDCIPFQVKGI  231 (301)
Q Consensus       213 ---------l~~~v~~----------------------------------------------------~~e~~p~~~R~~  231 (301)
                               +.|++++                                                    .+|.+|++.|++
T Consensus       293 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t  372 (432)
T PRK10406        293 MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRAL  372 (432)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccch
Confidence                     3333222                                                    689999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        232 ATGIAVAVNWIG-AFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       232 ~~~~~~~~~~~~-~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      +.|+++.++++. +...|.+.+.+ +..| +...+++.++.++++.+..++  .++++|++
T Consensus       373 ~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~~  430 (432)
T PRK10406        373 GVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKGM  430 (432)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH--hhhccccc
Confidence            999999887763 45577777744 5556 434455555556666555544  33445543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.88  E-value=1.8e-22  Score=175.94  Aligned_cols=216  Identities=13%  Similarity=0.117  Sum_probs=159.9

Q ss_pred             CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Q psy16653         25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPI   99 (301)
Q Consensus        25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~   99 (301)
                      +++..+++.|+++|++.|. .+.....++|++|+++|++.+++.+.+..+|.++++.++..     |||+.|++.+++++
T Consensus        77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~  155 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA  155 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            7899999999999999985 56677777999999999999999999999999999888765     99999999999988


Q ss_pred             HHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHH
Q psy16653        100 LLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGL  179 (301)
Q Consensus       100 ~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
                      +..++.++++||+|++.   ++              ..+.+       +   .    ..++++++++|..+.....    
T Consensus       156 ~~~~~~~~~lp~~p~~~---~~--------------~~~~~-------~---~----~~~~~~ll~~~~~~~~~~~----  200 (368)
T TIGR00903       156 AGIILVLAALPALPFQA---AE--------------GFGFK-------D---A----VKEFGALAGRKDLWIIGAI----  200 (368)
T ss_pred             HHHHHHHHHcCCCCCCC---CC--------------CcchH-------H---H----HHHHHHHHcChhHHHHHHH----
Confidence            87777776899998652   10              00000       0   0    0135677777643222222    


Q ss_pred             HHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-------------Hhhhccc---------------------------
Q psy16653        180 MVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-------------IQDSLIS---------------------------  219 (301)
Q Consensus       180 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------------l~~~v~~---------------------------  219 (301)
                       .+......+.+.+|+|+++++.|++.......             +.|++.+                           
T Consensus       201 -~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~  279 (368)
T TIGR00903       201 -LGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN  279 (368)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence             22223346788899999998877653211111             2232211                           


Q ss_pred             -------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q psy16653        220 -------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVG  274 (301)
Q Consensus       220 -------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~  274 (301)
                                               .+|.+|++.|+++.|+.+..++++++.+|.+.+.+..  +....|.++++..+++
T Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~  357 (368)
T TIGR00903       280 RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIA  357 (368)
T ss_pred             cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence                                     7899999999999999999999999999999987773  6667788888888887


Q ss_pred             HHHhh
Q psy16653        275 TVFTF  279 (301)
Q Consensus       275 ~~~~~  279 (301)
                      .+...
T Consensus       358 ~~~~~  362 (368)
T TIGR00903       358 FAIAL  362 (368)
T ss_pred             HHHHH
Confidence            77764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.86  E-value=3.8e-22  Score=178.19  Aligned_cols=263  Identities=11%  Similarity=0.008  Sum_probs=182.6

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.+++.+++++.++...+++++.+++.|++.|++.|...+....++.|++|+++||+.+++++.+..+|..+++.+
T Consensus        87 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~  166 (434)
T PRK11663         87 ARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV  166 (434)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888889999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      ...     +||+.|++.+++.++..+...+++||+|++.......++.+           +.. +      ..++.++++
T Consensus       167 ~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~-~------~~~~~~~~~  228 (434)
T PRK11663        167 VGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DAL-E------LAQQQEGAG  228 (434)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------ccc-c------cchhccccC
Confidence            654     99999999998887665555547899886531111000000           000 0      000000001


Q ss_pred             chhhh-----hhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hh
Q psy16653        158 ASFSD-----LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQ  214 (301)
Q Consensus       158 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~  214 (301)
                      .++++     .++++..+. .   ... ..........+..|+|.++.+ .|++.......                 +.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~  303 (434)
T PRK11663        229 LSRKEILTKYVLLNPYIWL-L---SFS-YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGS  303 (434)
T ss_pred             CChhhhHHHHHhcChHHHH-H---HHH-HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            11222     333442221 1   111 111122244566788888854 45553222111                 44


Q ss_pred             hhcc---c--------------------------------------------------ccccCCcchhhhHHHHHHHHHH
Q psy16653        215 DSLI---S--------------------------------------------------MFDCIPFQVKGIATGIAVAVNW  241 (301)
Q Consensus       215 ~~v~---~--------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~  241 (301)
                      ||+.   +                                                  ..|.+|++.|+++.|+.+..++
T Consensus       304 dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  383 (434)
T PRK11663        304 DKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAY  383 (434)
T ss_pred             HHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHH
Confidence            5541   0                                                  5799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653        242 IGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGK  288 (301)
Q Consensus       242 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  288 (301)
                      +++.++|.+.+++.++.|++..|...+++++++.+..+...++++++
T Consensus       384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            99999999999999999999999888888888877666655555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.85  E-value=8e-22  Score=174.90  Aligned_cols=256  Identities=13%  Similarity=0.087  Sum_probs=173.3

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+..++.++++++++.+++++++.+++.|+++|++.|...|....++.|++|+++||+.+++++.+..+|.++++.+
T Consensus        72 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~  151 (412)
T TIGR02332        72 ARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL  151 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888999999999999999999999999999999999999999999999999999999999999999888888766


Q ss_pred             cc-----------chhHHHHHHHHHHHHHHHHHHhcccccchh---HHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHH
Q psy16653         83 GL-----------STYTVIAIGCLAVPILLLVLFFLVVPETPI---YLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQR  148 (301)
Q Consensus        83 ~~-----------~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  148 (301)
                      +.           .|||+.|++.++++++..++.++++||+|+   |+..    ++.+...++.+..+.+.++..+..++
T Consensus       152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (412)
T TIGR02332       152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGAFAH  227 (412)
T ss_pred             HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccccccccccccc
Confidence            42           289999999999998877766668899994   3211    11111111111111000000000000


Q ss_pred             HHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcC--CCCCcchh-h-------------
Q psy16653        149 EIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAG--STLDPGFS-Y-------------  212 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~~~~-~-------------  212 (301)
                         +.......+++++ +|..+     ...+.+.....+++.+..|+|.++++.+  .+...... .             
T Consensus       228 ---~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~  298 (412)
T TIGR02332       228 ---AAMPQRSMLREIF-TPAIM-----LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIW  298 (412)
T ss_pred             ---ccccHHHHHHHhc-ChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHH
Confidence               0000011233333 23221     2222233333446778899999998853  33111111 0             


Q ss_pred             ---Hhhhccc-------------------------------------------------ccccCCcchhhhHHHHHHHHH
Q psy16653        213 ---IQDSLIS-------------------------------------------------MFDCIPFQVKGIATGIAVAVN  240 (301)
Q Consensus       213 ---l~~~v~~-------------------------------------------------~~e~~p~~~R~~~~~~~~~~~  240 (301)
                         +.|++++                                                 ..|.+|++.|+++.|+.+..+
T Consensus       299 ~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~  378 (412)
T TIGR02332       299 WSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATG  378 (412)
T ss_pred             HHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhh
Confidence               3444332                                                 467899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC-cchhHHHHHHHH
Q psy16653        241 WIGAFLVTLCFGFLVRHFG-SAATFWIFTVCC  271 (301)
Q Consensus       241 ~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~  271 (301)
                      +++++++|.+.+.+.+..| |+..+.+.+++.
T Consensus       379 ~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       379 NIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             hhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            9999999999999998875 766666555543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.83  E-value=1.4e-20  Score=167.88  Aligned_cols=258  Identities=11%  Similarity=0.065  Sum_probs=172.0

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++.+++++++.++++|++.|++.|..++....++.|++|+++|++..++.+.+..+|.++++.+
T Consensus        82 ~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l  161 (426)
T PRK12307         82 RKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF  161 (426)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence            45667778888899999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      ...     +||+.|++..++.++.+.+.. ..||++++...+.+.            +++..++          ..+...
T Consensus       162 ~~~l~~~~~w~~~f~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~------------~~~~~~~----------~~~~~~  218 (426)
T PRK12307        162 MPSFAEAYGWRAAFFVGLLPVLLVIYIRA-RAPESKEWEEAKLSG------------KGKHSQS----------AWSVFS  218 (426)
T ss_pred             HHHHcccCCHHHHHHHHHHHHHHHHHHHH-HCCCChHHHHhhhhc------------ccccccc----------chhhhh
Confidence            532     999999986655554444433 567776543211100            0000000          000011


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-  219 (301)
                      .+++++++++..+ .......+.+. .+...+.+..+.|.++++.|.+.+.....                 +.|++++ 
T Consensus       219 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  296 (426)
T PRK12307        219 LSMKGLFNRAQFP-LTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK  296 (426)
T ss_pred             HHHHHHHhhchHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            2456677766333 22222222222 22223346677888888776542221110                 3333322 


Q ss_pred             -------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy16653        220 -------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLC  250 (301)
Q Consensus       220 -------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~  250 (301)
                                                                       +.|.+|++.|+++.|+.+.++++++.++|.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~  376 (426)
T PRK12307        297 KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA  376 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence                                                             6899999999999999999999999999999


Q ss_pred             HHHHHHhhCcchh-HHHHHHHHHHHHHHhheecccC
Q psy16653        251 FGFLVRHFGSAAT-FWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       251 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      .+++.++.|+... +++.++.+.++.....+..|++
T Consensus       377 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (426)
T PRK12307        377 ATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR  412 (426)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence            9999998886433 3333333444443333444554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.83  E-value=6.3e-21  Score=171.95  Aligned_cols=265  Identities=11%  Similarity=0.022  Sum_probs=173.6

Q ss_pred             cccccccccCccccchhhh-----hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEIN-----FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL   77 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~-----~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~   77 (301)
                      +|+++.+++.+++++.+..     +.+++++.+++.|+++|++.|...|....+++||+|+++||+++++++.+..+|.+
T Consensus        93 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~  172 (467)
T PRK09556         93 TKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA  172 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh
Confidence            4555555555555555444     44789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccc--------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653         78 YLYCLGLS--------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE  149 (301)
Q Consensus        78 ~~~~i~~~--------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  149 (301)
                      ++..+...        +||..|.+.+++++++.+..+++.+|+|.....+ +.++   ..    +.+.+.+++      .
T Consensus       173 l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~----~~~~~~~~~------~  238 (467)
T PRK09556        173 GAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IF----GEPISEEDK------E  238 (467)
T ss_pred             HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---cc----cCccchhhh------c
Confidence            98776532        5999999999988887776665678877431110 1111   00    000000000      0


Q ss_pred             HHHHhhc-cchh-hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh--------------
Q psy16653        150 IDAAARK-KASF-SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY--------------  212 (301)
Q Consensus       150 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~--------------  212 (301)
                      .++++.+ ...+ +..+++|..+..    ....++ .....+.+.+|+|.++++ .|++.......              
T Consensus       239 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~-~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~  313 (467)
T PRK09556        239 TESTDMTKWQIFVEYVLKNPVIWLL----CFANIF-LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLL  313 (467)
T ss_pred             cccccCcHHHHHHHHHHcChHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000 0011 224555533322    222222 222245678899988876 46553222111              


Q ss_pred             ---Hhhhccc--------------------------------------------------ccccCCcchhhhHHHHHHHH
Q psy16653        213 ---IQDSLIS--------------------------------------------------MFDCIPFQVKGIATGIAVAV  239 (301)
Q Consensus       213 ---l~~~v~~--------------------------------------------------~~e~~p~~~R~~~~~~~~~~  239 (301)
                         +.|++++                                                  ..|.+|++.||++.|+.+..
T Consensus       314 ~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~  393 (467)
T PRK09556        314 WGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF  393 (467)
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence               4444332                                                  56999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHH------------hhCcchhHHHHHHHHHHHHHHhheec-ccCC
Q psy16653        240 NWI-GAFLVTLCFGFLVR------------HFGSAATFWIFTVCCVVGTVFTFMVV-PETK  286 (301)
Q Consensus       240 ~~~-~~~i~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~et~  286 (301)
                      +++ +..++|.+.+.+.+            ..+|+..|.++.++++++.++..... .|++
T Consensus       394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  454 (467)
T PRK09556        394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVMEER  454 (467)
T ss_pred             HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            997 66999999999999            56788888888888887776665543 4443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.83  E-value=2.5e-20  Score=164.32  Aligned_cols=245  Identities=11%  Similarity=0.028  Sum_probs=176.4

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      .|+++.++..+++++.++++++++++.+++.|+++|++.+...+....++.|++|+++|++..++++.+..+|..+++.+
T Consensus        73 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l  152 (390)
T PRK03545         73 RRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPL  152 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhH
Confidence            46777888889999999999999999999999999999998999999999999999999999999999999999998887


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      +..     |||+.|++.++++++..+..++.+||+|+.     +              + +                 +.
T Consensus       153 ~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~--------------~-~-----------------~~  195 (390)
T PRK03545        153 GRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H--------------S-G-----------------SL  195 (390)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C--------------c-c-----------------hH
Confidence            754     999999999998887766655466775420     0              0 0                 00


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~  219 (301)
                      .+.++.+++|..+...........     ..+....+.+.++++ .|.+.+.....                 +.||.++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~  270 (390)
T PRK03545        196 KSLPLLFRRPALVSLYLLTVVVVT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPS  270 (390)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            123445666633332222221111     123334555555555 35553322111                 3333222


Q ss_pred             ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF  251 (301)
Q Consensus       220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~  251 (301)
                                                                      ..|..| +.|+++.|+.+...+++..++|.+.
T Consensus       271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~  349 (390)
T PRK03545        271 GFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLG  349 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            556666 5789999999999999999999999


Q ss_pred             HHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHH
Q psy16653        252 GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLA  291 (301)
Q Consensus       252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~  291 (301)
                      +.+.++.|++..+...+.+.+++.++.+...+ ....++|
T Consensus       350 G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  388 (390)
T PRK03545        350 NQVSLHLGLSSIGYVGAALALAALVWSILIFR-RFPVTLE  388 (390)
T ss_pred             HHHHhccChhHHHHHHHHHHHHHHHHHHHHcc-ccchhhc
Confidence            99999999999998888888888777666443 3333444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3.5e-20  Score=158.52  Aligned_cols=238  Identities=17%  Similarity=0.129  Sum_probs=178.4

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+++...+.+|.++++++++++||+.++++|++.|++.|...++...+..+..||++|++++++...+.+++.+++..++
T Consensus        78 r~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG  157 (394)
T COG2814          78 RRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG  157 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence            56777888999999999999999999999999999999999999999999999999999999999999888888887776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA  158 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (301)
                      .+     |||..|++.+..+++.++..+..+|  |+..    +            +.   .              +.+..
T Consensus       158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~----~------------~~---~--------------~~~~~  202 (394)
T COG2814         158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI----S------------GS---L--------------PGPLR  202 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC----C------------CC---C--------------Ccchh
Confidence            55     9999999999999998888887888  2110    0            00   0              00111


Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc-
Q psy16653        159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS-  219 (301)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~-  219 (301)
                      +..+.+++|..+..+.. ..++    ++|.+....|...++++ .|++.+.....                 +.|+ +. 
T Consensus       203 ~~~~~l~~p~v~~~l~~-t~l~----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         203 TLLRLLRRPGVLLGLLA-TFLF----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             HHHHHhcCchHHHHHHH-HHHH----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence            24556777744443333 2232    33455555565555555 46664332221                 3333 11 


Q ss_pred             ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF  251 (301)
Q Consensus       220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~  251 (301)
                                                                      .++ .-++.+..+.+++....+++..++..+.
T Consensus       277 ~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lG  355 (394)
T COG2814         277 RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALG  355 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            555 4456789999999999999999999999


Q ss_pred             HHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653        252 GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP  283 (301)
Q Consensus       252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +.+.+++|+....+..+...+++.++.....+
T Consensus       356 G~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         356 GLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988888888888877777665433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.82  E-value=4.4e-20  Score=165.81  Aligned_cols=261  Identities=12%  Similarity=0.061  Sum_probs=169.9

Q ss_pred             cccccccccCccccchhhhhccC----CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH-H
Q psy16653          3 PVTLNQLALPDGGVGYEINFKET----RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI-L   77 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~   77 (301)
                      +|+++.++..+++++.++.++.+    +++.+++.|++.|++.|...+.....+.|++|+++|++..++++.+..+|. +
T Consensus        92 ~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  171 (452)
T PRK11273         92 PRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGL  171 (452)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhH
Confidence            46677778888888888777653    566788899999999999989888899999999999999999999988886 3


Q ss_pred             HHHHhcc----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653         78 YLYCLGL----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA  152 (301)
Q Consensus        78 ~~~~i~~----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
                      .+++++.    . +||+.|++.+++.++..++..+++||+|+....+.+ ++.+      ++.+ +..      +++.++
T Consensus       172 ~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~------~~~~-~~~------~~~~~~  237 (452)
T PRK11273        172 PPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK------NDYP-DDY------NEKHEQ  237 (452)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh------hccc-ccc------ccccCC
Confidence            4444321    2 999999999988888766665588998864211111 1100      0000 000      000000


Q ss_pred             Hhhccchh-hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653        153 AARKKASF-SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I  213 (301)
Q Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l  213 (301)
                      +++.+..+ ..+++++..+...+......     ...+.+..|.|.++++. |++.......                 +
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l  312 (452)
T PRK11273        238 ELTAKQIFMQYVLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM  312 (452)
T ss_pred             CccHHHHHHHHHHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000011 12445543222222211111     12456777889988764 5553222111                 4


Q ss_pred             hhhcc--c---------------------------------------------------ccccCCcchhhhHHHHHHHHH
Q psy16653        214 QDSLI--S---------------------------------------------------MFDCIPFQVKGIATGIAVAVN  240 (301)
Q Consensus       214 ~~~v~--~---------------------------------------------------~~e~~p~~~R~~~~~~~~~~~  240 (301)
                      .|++.  +                                                   ..|.+|++.||++.|+.+...
T Consensus       313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  392 (452)
T PRK11273        313 SDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  392 (452)
T ss_pred             HHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHH
Confidence            44431  1                                                   458999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653        241 WIGAFL-VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       241 ~~~~~i-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      ++++.+ +|.+.+.+.++.|++..|.+.+++++++.+....+.
T Consensus       393 ~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        393 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            998765 799999999999998899888888887776665443

>KOG2532|consensus

Probab=99.82  E-value=1.7e-20  Score=166.49  Aligned_cols=255  Identities=15%  Similarity=0.099  Sum_probs=192.5

Q ss_pred             cccccccccCccccchhhhhcc--CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKE--TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      +|+++..+..+.++++++.-.+  .+++.+++.|+++|++.|..+|....+.+.|+|++||++..++...+..+|.+++.
T Consensus       102 ~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~m  181 (466)
T KOG2532|consen  102 ARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITM  181 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777888888888887554  45667899999999999999999999999999999999999999999999999988


Q ss_pred             Hhccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHh
Q psy16653         81 CLGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAA  154 (301)
Q Consensus        81 ~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
                      .+++.      ||+.+|++.++.+++..++++++..|+|..                   ++.-.++|.+++++++.+++
T Consensus       182 p~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-------------------h~~is~~El~~I~~~k~~~~  242 (466)
T KOG2532|consen  182 PVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-------------------HPNISEKELKYIEKGKSEAH  242 (466)
T ss_pred             HhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-------------------CCCCCHHHHHHHHhcccccc
Confidence            77654      999999999999999999998778888842                   12234455555555544332


Q ss_pred             h---ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653        155 R---KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I  213 (301)
Q Consensus       155 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l  213 (301)
                      .   .+.+++++++++..+ .    ..+..+....+++.+..|+|.++++. +++...+-..                 +
T Consensus       243 ~~~~~~vP~~~i~ts~~vw-a----i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~l  317 (466)
T KOG2532|consen  243 VKKKPPVPYKAILTSPPVW-A----IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQL  317 (466)
T ss_pred             cCCCCCCCHHHHHcCHHHH-H----HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            2   367899999998433 2    22223334445889999999999986 6554433222                 3


Q ss_pred             hhhccc-----------------------------------------------------------ccccCCcchhhhHHH
Q psy16653        214 QDSLIS-----------------------------------------------------------MFDCIPFQVKGIATG  234 (301)
Q Consensus       214 ~~~v~~-----------------------------------------------------------~~e~~p~~~R~~~~~  234 (301)
                      +|++-.                                                           ..+. .++.-+...|
T Consensus       318 sD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g  396 (466)
T KOG2532|consen  318 SDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMG  396 (466)
T ss_pred             HHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHH
Confidence            333110                                                           2222 4455699999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---hhCcchhHHHHHHHHHHHHHHhheec
Q psy16653        235 IAVAVNWIGAFLVTLCFGFLVR---HFGSAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      +.+.+..+.++++|.+.+.+..   ..+|+.+|++.+++.+++.++..++.
T Consensus       397 ~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  397 IINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            9999999999999999998883   34688999999999999887766654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.82  E-value=5.9e-20  Score=162.77  Aligned_cols=246  Identities=16%  Similarity=0.121  Sum_probs=169.4

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+..+..+.+++.++..++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|..+++.+
T Consensus        79 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  158 (406)
T PRK11551         79 RKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI  158 (406)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777778888888899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      +..     +||+.|++.++..++..++..+++||+|++...+++.++.               ++               
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~~---------------  208 (406)
T PRK11551        159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR---------------AP---------------  208 (406)
T ss_pred             HHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh---------------hh---------------
Confidence            643     8999999988877766665554789998653221110000               00               


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-  219 (301)
                       ..+..++.+..+ +..... ...+......+....|.|.++++.|.+.......                 +.|+.++ 
T Consensus       209 -~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (406)
T PRK11551        209 -VLRALFGEGRAT-ATLLLW-ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR  285 (406)
T ss_pred             -hHHHHhhhhhhh-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence             001111111011 111111 1111222234566778888888877653322211                 3444332 


Q ss_pred             -----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 -----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFG  252 (301)
Q Consensus       220 -----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~  252 (301)
                                                                     ..|.+|++.|+++.|+.+..+.+++.++|.+.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g  365 (406)
T PRK11551        286 RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG  365 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh
Confidence                                                           789999999999999999999999999999999


Q ss_pred             HHHHhhCcc-hhHHHHHHHHHHHHHHhhee
Q psy16653        253 FLVRHFGSA-ATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       253 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  281 (301)
                      .+.++.+.. ..+.....+.+++.++.+..
T Consensus       366 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        366 QLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            998875543 33444444454544444443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.82  E-value=1.6e-20  Score=164.97  Aligned_cols=261  Identities=13%  Similarity=0.069  Sum_probs=179.8

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+++++.++.+++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+....+|.++++.+
T Consensus        58 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  137 (399)
T TIGR00893        58 ARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPL  137 (399)
T ss_pred             cceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            45667778888889999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      +..     +||+.|++.+++.++..+..++..||+|+.-.. .+.++.....++...+           .++.++++.+.
T Consensus       138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  205 (399)
T TIGR00893       138 VGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLLAE-----------QQGKGPSTPKK  205 (399)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhccc-----------cccccccCCCc
Confidence            764     999999999998888777766567877632100 0111100000000000           00000111123


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhhccc
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDSLIS  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~v~~  219 (301)
                      .+.++.+++|..+..    ...... .......+..+.|.++++. |.+.......                 +.|++++
T Consensus       206 ~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  280 (399)
T TIGR00893       206 YQIKELLKDRRVWGL----ALGQFL-VNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLR  280 (399)
T ss_pred             cchHHHhcCHHHHHH----HHHHHH-HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345566666532222    212222 2223556677777777653 4432211110                 2232111


Q ss_pred             -------------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHH
Q psy16653        220 -------------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGA  244 (301)
Q Consensus       220 -------------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~  244 (301)
                                                                             ..|.+|++.|+++.|+.+.+.++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~  360 (399)
T TIGR00893       281 RGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG  360 (399)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh
Confidence                                                                   7899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhhe
Q psy16653        245 FLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       245 ~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      .++|.+.+.+.+..| ++..+.+.+++++++.+..++
T Consensus       361 ~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       361 IVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888 877888887777776665543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.81  E-value=1.4e-19  Score=161.68  Aligned_cols=221  Identities=10%  Similarity=0.068  Sum_probs=143.1

Q ss_pred             ccccccccCccccchhhhhccCCeeE--------EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVS--------IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G   75 (301)
                      |+++..++.+++++++++++++++..        ++++|+++|++.|...+....+++|++|+++||+.+++.+....+|
T Consensus        86 r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g  165 (434)
T PRK15075         86 RKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA  165 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence            56777888889999999999999874        6889999999999999999999999999999999999987766655


Q ss_pred             HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653         76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE  142 (301)
Q Consensus        76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  142 (301)
                      ..+++.++             ..|||+.|++..+...+...... ..||++.+...+++             .       
T Consensus       166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~-------------~-------  224 (434)
T PRK15075        166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRR-SLEETEEFLARKHR-------------P-------  224 (434)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHhhhc-------------c-------
Confidence            55444332             12999999986655433333332 45554422110000             0       


Q ss_pred             HHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh---------
Q psy16653        143 LAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY---------  212 (301)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~---------  212 (301)
                                  +.+..+++..++   ++.....+..... +..+.+.+.+|.|.++++ .|++.+.....         
T Consensus       225 ------------~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~  288 (434)
T PRK15075        225 ------------SMREIFRSLAAN---WRIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNF  288 (434)
T ss_pred             ------------ccccHHHHHHHh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                        000011111111   1122222222222 233456677788888776 36553322111         


Q ss_pred             --------Hhhhccc----------------------------------------------------ccccCCcchhhhH
Q psy16653        213 --------IQDSLIS----------------------------------------------------MFDCIPFQVKGIA  232 (301)
Q Consensus       213 --------l~~~v~~----------------------------------------------------~~e~~p~~~R~~~  232 (301)
                              +.||+++                                                    .+|.+|++.|+++
T Consensus       289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~  368 (434)
T PRK15075        289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAG  368 (434)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchh
Confidence                    2333221                                                    7899999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhhCcc
Q psy16653        233 TGIAVAVNWI-GAFLVTLCFGFLVRHFGSA  261 (301)
Q Consensus       233 ~~~~~~~~~~-~~~i~~~~~~~l~~~~~~~  261 (301)
                      .++.+.++.. ++.++|.+.+.+.++.|+.
T Consensus       369 ~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        369 FSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             eeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            9998777665 5888999999999988853

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.80  E-value=4.7e-19  Score=156.57  Aligned_cols=248  Identities=9%  Similarity=0.017  Sum_probs=161.6

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++..++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|..+++.+
T Consensus        76 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l  155 (405)
T TIGR00891        76 RRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV  155 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            35667778888889999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             ccc-----h--hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhh
Q psy16653         83 GLS-----T--YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR  155 (301)
Q Consensus        83 ~~~-----~--Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
                      +..     +  ||+.|++.+++.++..+... .+||+|++...+++.++..+..++..+.+....+..++          
T Consensus       156 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  224 (405)
T TIGR00891       156 YSLVVPVWGDGWRALFFISILPIIFALWLRK-NIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMT----------  224 (405)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-hCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhh----------
Confidence            643     4  99999998877777666655 78999876433322222222222221111000000000          


Q ss_pred             ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhc
Q psy16653        156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSL  217 (301)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v  217 (301)
                      .....++.  .+..+...........+..+. ......+.|.++.+ .|.+.......                 +.|++
T Consensus       225 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  301 (405)
T TIGR00891       225 LAAAMVQS--AGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL  301 (405)
T ss_pred             hhHHhhhh--hhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            00001110  010111111111121221111 23444556666654 35442221110                 33332


Q ss_pred             cc-------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy16653        218 IS-------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVT  248 (301)
Q Consensus       218 ~~-------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~  248 (301)
                      ++                                                 ..|.+|++.|+++.|+.+.+.++++.++|
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~  381 (405)
T TIGR00891       302 GRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAP  381 (405)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHH
Confidence            22                                                 88999999999999999999999999999


Q ss_pred             HHHHHHHHhhC-cchhH
Q psy16653        249 LCFGFLVRHFG-SAATF  264 (301)
Q Consensus       249 ~~~~~l~~~~~-~~~~~  264 (301)
                      .+.+.+.++.| ++..+
T Consensus       382 ~~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       382 IIGALLAQRLDEYGTAL  398 (405)
T ss_pred             HHHHHHHHhccccchhH
Confidence            99999999988 54433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.79  E-value=1.1e-19  Score=162.67  Aligned_cols=267  Identities=13%  Similarity=0.073  Sum_probs=175.3

Q ss_pred             cccccccccCccccchhhhhcc----CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKE----TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY   78 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~   78 (301)
                      +|+++.++..+.+++.++.+..    .++..+.+.|++.|++.|...+....++.|++|+++||+..++++.+..+|..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~  169 (438)
T TIGR00712        90 PRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI  169 (438)
T ss_pred             CceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH
Confidence            3556667777777777776654    345567788999999999999999999999999999999999999998888887


Q ss_pred             HHHhcc-----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653         79 LYCLGL-----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA  152 (301)
Q Consensus        79 ~~~i~~-----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
                      ++.+..     . +||..|++.++++++..+..++++||+|+....+ +.++       .+++..+...+  +.++   +
T Consensus       170 ~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~--~~~~---~  236 (438)
T TIGR00712       170 PPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEE-------YRNDYPDDYNE--KAEQ---E  236 (438)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchh-------ccccccccccc--cccc---c
Confidence            764432     2 8999999999998887666665789988542100 0000       00000000000  0000   0


Q ss_pred             HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hh
Q psy16653        153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQ  214 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~  214 (301)
                      .+.++...+..++++..+.......+     .....+.+..|.|.++++. |.+.......                 +.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~  311 (438)
T TIGR00712       237 LTAKEIFMQYVLPNKLLWYIAIANVF-----VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS  311 (438)
T ss_pred             cchHHHHHHHHccCchHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000011234555533322222111     1122456777888888764 5543222111                 33


Q ss_pred             hhccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHH
Q psy16653        215 DSLIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNW  241 (301)
Q Consensus       215 ~~v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~  241 (301)
                      ||.++                                                     ..|.+|++.|+++.|+.+..++
T Consensus       312 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  391 (438)
T TIGR00712       312 DKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  391 (438)
T ss_pred             HHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHH
Confidence            44311                                                     4689999999999999999998


Q ss_pred             HHH-HHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        242 IGA-FLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       242 ~~~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      +++ .++|.+.+.+.++.|+...+.+..+.++++.+...+..||.|+
T Consensus       392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            875 6899999999999999888888888888888888888888663

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.79  E-value=1e-18  Score=154.14  Aligned_cols=245  Identities=11%  Similarity=0.007  Sum_probs=169.7

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+..++.+++++.++++++++++.++++|+++|++.|...+....++.|++| ++|+++++.+..+...|..++..+
T Consensus        73 ~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~  151 (393)
T PRK09705         73 ERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAI  151 (393)
T ss_pred             chHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999999999999999999999999987 889999999998877777777766


Q ss_pred             ccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc
Q psy16653         83 GLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARK  156 (301)
Q Consensus        83 ~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
                      +..      +||..+...+++.++..+..++..++.|+         +          ++                 + +
T Consensus       152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----------~~-----------------~-~  194 (393)
T PRK09705        152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA---------S----------SH-----------------K-T  194 (393)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------c----------cc-----------------C-C
Confidence            543      79999887777665444433311111110         0          00                 0 0


Q ss_pred             cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc
Q psy16653        157 KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS  219 (301)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~  219 (301)
                      +.+..+.++++..+. ..   ..... ...+++....|.|.++.+.|.+.+.....                 +.|+.++
T Consensus       195 ~~~~~~~l~~~~~~~-l~---~~~~~-~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~  269 (393)
T PRK09705        195 TTTPVRVVFTPRAWT-LG---VYFGL-INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR  269 (393)
T ss_pred             CcCCcccccCHhHHH-HH---HHHHH-HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            001122333432221 11   11111 12235677788899888876664332211                 2333222


Q ss_pred             -----------------------------------------------ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 -----------------------------------------------MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCF  251 (301)
Q Consensus       220 -----------------------------------------------~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~  251 (301)
                                                                     ..+.+ |++.|++..|+.+..+++++.++|.+.
T Consensus       270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~  349 (393)
T PRK09705        270 RKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFS  349 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                           34555 567899999999999999999999999


Q ss_pred             HHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        252 GFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       252 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      +++.++.| +...+.+.++++++..++.+...|||+++..
T Consensus       350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        350 GVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            99999887 5556666677777777777778888876643

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.78  E-value=3.1e-19  Score=160.95  Aligned_cols=254  Identities=13%  Similarity=0.059  Sum_probs=173.3

Q ss_pred             cccccccccCccccchhhhhc--cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFK--ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      +|+.+.+++.+++++.++...  ..+++.+++.|+++|++.|...+....++.|++|+++|++..++.+.+..+|.++++
T Consensus       105 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~  184 (465)
T TIGR00894       105 FKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFL  184 (465)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777777788777643  356778999999999999999999999999999999999999999999999999888


Q ss_pred             Hhccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH--
Q psy16653         81 CLGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA--  152 (301)
Q Consensus        81 ~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--  152 (301)
                      .+...      +||+.|++.++++++..++++++.+|+|+....  ..++.++                 ..++..++  
T Consensus       185 ~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~-----------------~i~~~~~~~~  245 (465)
T TIGR00894       185 PISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC--ISKFEKK-----------------YINSSLQGQK  245 (465)
T ss_pred             HHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC--CCHHHHH-----------------HHHhhccccc
Confidence            77543      899999999999988887777567788852110  0011000                 11110000  


Q ss_pred             -HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653        153 -AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I  213 (301)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l  213 (301)
                       +.+.+.+++++++++..+...     +..+....+.+.+..|+|.++++. |.+.......                 +
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l  320 (465)
T TIGR00894       246 GSTRQSLPIKAIPKSLPVWAIW-----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYL  320 (465)
T ss_pred             CCCCCCCCHHHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             011223567777776332222     222233334677888999998764 5543222111                 2


Q ss_pred             hhhccc-----------------------------------------------------------ccccCCcchhhhHHH
Q psy16653        214 QDSLIS-----------------------------------------------------------MFDCIPFQVKGIATG  234 (301)
Q Consensus       214 ~~~v~~-----------------------------------------------------------~~e~~p~~~R~~~~~  234 (301)
                      .|+..+                                                           ..|..|. .+|++.|
T Consensus       321 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g  399 (465)
T TIGR00894       321 ADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKG  399 (465)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHH
Confidence            332110                                                           3455555 7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---CcchhHHHHHHHHHHHHHHhhee
Q psy16653        235 IAVAVNWIGAFLVTLCFGFLVRHF---GSAATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~  281 (301)
                      +.+..+.+++.++|.+.+++.+..   +|...|.+.++.++++.++..+.
T Consensus       400 ~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       400 ITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            999999999999999999887643   36667888888888777665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.78  E-value=1e-18  Score=155.46  Aligned_cols=259  Identities=15%  Similarity=0.018  Sum_probs=179.7

Q ss_pred             cccccccccCccccchhhhh-----ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINF-----KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL   77 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~   77 (301)
                      +|+++.++..+.+++.+..+     ..++++.+++.|++.|++.|...+....++.|+.|+++|++..++.+....+|..
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  160 (417)
T PRK10489         81 RKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV  160 (417)
T ss_pred             CceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH
Confidence            35566666666665554432     2567788889999999998888888899999999999999999999999999999


Q ss_pred             HHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653         78 YLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA  152 (301)
Q Consensus        78 ~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
                      +++.++..     +||+.|++.++..++..+..+ .+||+++.-  +++              + +..++          
T Consensus       161 ~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~--~~~--------------~-~~~~~----------  212 (417)
T PRK10489        161 ISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPALPPPP--QPR--------------E-HPLRS----------  212 (417)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCCCCCC--ccc--------------c-cchHH----------
Confidence            98888754     899999998888877766665 788765310  000              0 00000          


Q ss_pred             HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hh
Q psy16653        153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQ  214 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~  214 (301)
                         ....++..+++|..+...+. ..+...     .+.+..+.|.++++ .|.+.......                 +.
T Consensus       213 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~  283 (417)
T PRK10489        213 ---LLAGFRFLLASPVVGGIALL-GGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLA  283 (417)
T ss_pred             ---HHHHHHHHHcChHHHHHHHH-HHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence               01123445555533222222 111111     23445567777776 45543221111                 11


Q ss_pred             hhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653        215 DSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL  246 (301)
Q Consensus       215 ~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i  246 (301)
                      |+...                                                ..|..|++.|+++.|+.+...+++..+
T Consensus       284 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  363 (417)
T PRK10489        284 HSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI  363 (417)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH
Confidence            21100                                                678999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhc
Q psy16653        247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELG  298 (301)
Q Consensus       247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~  298 (301)
                      ++.+.+.+.+..|.+..+...+++.++..++.+...|++|++++||++++-+
T Consensus       364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (417)
T PRK10489        364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS  415 (417)
T ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence            9999999999999888888888887777777777789999999999877543

>TIGR00895 2A0115 benzoate transport

Probab=99.76  E-value=6.3e-19  Score=155.23  Aligned_cols=246  Identities=15%  Similarity=0.115  Sum_probs=163.8

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+..+..+.+++.++..++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  161 (398)
T TIGR00895        82 KRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA  161 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence            45666777778888888889999999999999999999999999999999999999999999999999999999888776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA  158 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (301)
                      ..     +||+.|++.++..++..++.++++||+|++...+ +.+++.+..++......+..++  +..++.++++..+.
T Consensus       162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  238 (398)
T TIGR00895       162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQKATQGTKRS  238 (398)
T ss_pred             HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccccccccchhhH
Confidence            43     9999999987666666655555899999876555 4444444443332211110000  00000000001111


Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc--
Q psy16653        159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS--  219 (301)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~--  219 (301)
                      ..+..++.+ ..++......... ....+.+....|.|.+.++.|.+.+.....                 +.|+.++  
T Consensus       239 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (398)
T TIGR00895       239 VFKALFQGK-TARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV  316 (398)
T ss_pred             HHHHHhcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            122233333 2333333222222 223345667778887777776653322111                 3333322  


Q ss_pred             ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF  253 (301)
Q Consensus       220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~  253 (301)
                                                                    ..|.+|++.|+++.|+.+.+..++..++|.+.++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence                                                          7899999999999999999999999999988776


Q ss_pred             H
Q psy16653        254 L  254 (301)
Q Consensus       254 l  254 (301)
                      +
T Consensus       397 l  397 (398)
T TIGR00895       397 L  397 (398)
T ss_pred             c
Confidence            4

>KOG2533|consensus

Probab=99.76  E-value=2.3e-19  Score=159.72  Aligned_cols=174  Identities=10%  Similarity=0.026  Sum_probs=122.8

Q ss_pred             cccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---
Q psy16653          9 LALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS---   85 (301)
Q Consensus         9 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~---   85 (301)
                      ....++++-+++++...+++.+++.|++.|+.+|..+|....+++-|+.++|||+.++++.+...+|.+++.++++.   
T Consensus       116 ~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  116 VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            33444555666677788999999999999999999999999999999999999999999997777777776666421   


Q ss_pred             --------hhHHHHHHHHHHHHHHHHHHhcccccchh--HHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhh
Q psy16653         86 --------TYTVIAIGCLAVPILLLVLFFLVVPETPI--YLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR  155 (301)
Q Consensus        86 --------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
                              ||||.|++.|+++++..++.++++|+.|.  |...+   +|.+-..++.+..+.+..           +++.
T Consensus       196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~---~ek~~~~~~~~~~~~~~~-----------~~~~  261 (495)
T KOG2533|consen  196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD---EEKELVVERLRESPSGGI-----------ENKF  261 (495)
T ss_pred             hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch---HHHHHHHHHHHhccCCCc-----------cccc
Confidence                    99999999999999999999989999996  22221   111111112211111100           0012


Q ss_pred             ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh
Q psy16653        156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS  201 (301)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  201 (301)
                      +...+++.+++|..+...+    ..++.... .+++.+|+|.++++
T Consensus       262 ~~~~~~~a~~dp~vw~~~l----~~~~~~lv-~~~~~~~lpl~l~~  302 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSL----CYFFLKLV-NYGFSYWLPLYLKS  302 (495)
T ss_pred             CHHHHHHHHhchhHHHHHH----HHHHHhhc-cccHHHHHHHHHHc
Confidence            4456788888884333222    22333332 67899999999998

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.75  E-value=6.8e-19  Score=153.92  Aligned_cols=243  Identities=13%  Similarity=0.080  Sum_probs=163.8

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH-H
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY-C   81 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~-~   81 (301)
                      +|+++.++..+.+++.++.+++++++.+++.|++.|++.|...+....++.|+.|+++|++..++.+.+..+|..+++ .
T Consensus        59 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  138 (379)
T TIGR00881        59 PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL  138 (379)
T ss_pred             CeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHH
Confidence            466778888888999999999999999999999999999999999999999999999999999999999999998888 3


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARK  156 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
                      ++..     +||+.|++.+++.++..++.+++.||+|+....+.+.++        ..++.+.++     ++..++.+..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~  205 (379)
T TIGR00881       139 VLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM--------PNEEPDGDA-----EKKEEELTKK  205 (379)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccC--------ccccccccc-----ccccccccch
Confidence            4322     999999999988887776666578887753111000000        000000000     0000000111


Q ss_pred             cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhhcc
Q psy16653        157 KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDSLI  218 (301)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~v~  218 (301)
                      +...++.+++|..+...+.....     ......+..+.|.++.+. |.+.......                 +.|+..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       206 QIFLQYVLLNKVLWYISLGYVFV-----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            12344556665333222211111     112445666777777553 5442221111                 333210


Q ss_pred             c-----------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHH
Q psy16653        219 S-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAF  245 (301)
Q Consensus       219 ~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~  245 (301)
                      .                                                     ..|.+|++.|+++.|+.+.+..+++.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  360 (379)
T TIGR00881       281 NGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI  360 (379)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh
Confidence            0                                                     68999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCcchh
Q psy16653        246 LVTLCFGFLVRHFGSAAT  263 (301)
Q Consensus       246 i~~~~~~~l~~~~~~~~~  263 (301)
                      ++|.+.+.+.++.|++..
T Consensus       361 ~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       361 LAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             hhhhhHHHHHHhhccccc
Confidence            999999999999888754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.74  E-value=2.9e-18  Score=149.79  Aligned_cols=237  Identities=14%  Similarity=0.003  Sum_probs=162.2

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++.+++++++.+++.|++.|++.|..++....++.|++| ++|++..++.+.+..+|.+++..+
T Consensus        67 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~  145 (377)
T TIGR00890        67 PRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL  145 (377)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHH
Confidence            3667778888899999999999999999999999999999988888889999987 579999999999988887664433


Q ss_pred             c-cc----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 G-LS----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~-~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      . ..    +||+.|++.+++.++..+..+++++|+|+.-. +               ++.+..+              ++
T Consensus       146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~--------------~~  195 (377)
T TIGR00890       146 ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI-K---------------TNIEVSV--------------KD  195 (377)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcc-c---------------cCcccch--------------hh
Confidence            2 22    89999999999998887776646666542100 0               0000000              00


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-  219 (301)
                      .+.++.++++..+. .........   +. ......+.+.+.++.+.+.+.....                 +.||+++ 
T Consensus       196 ~~~~~~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  270 (377)
T TIGR00890       196 YTVWEMLRTPQFWV-LYLSFFLNA---VS-GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ  270 (377)
T ss_pred             hhHHHHHcCccHHH-HHHHHHHHh---HH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            12334555553222 221111111   11 2223334444555555442211110                 3333222 


Q ss_pred             -------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy16653        220 -------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLC  250 (301)
Q Consensus       220 -------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~  250 (301)
                                                                       .+|.+|++.|+++.|+.+....+++.++|.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~  350 (377)
T TIGR00890       271 KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI  350 (377)
T ss_pred             hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence                                                             7799999999999999999999999999999


Q ss_pred             HHHHHHhhCcchhHHHHHHHHHHHH
Q psy16653        251 FGFLVRHFGSAATFWIFTVCCVVGT  275 (301)
Q Consensus       251 ~~~l~~~~~~~~~~~~~~~~~~~~~  275 (301)
                      .+.+.++.|++..|.+.+++++++.
T Consensus       351 ~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       351 ASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999888888777776654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.74  E-value=9.1e-18  Score=147.55  Aligned_cols=232  Identities=14%  Similarity=0.106  Sum_probs=159.0

Q ss_pred             ccccccccCccccchhhhhccCCeeE--------EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVS--------IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G   75 (301)
                      |+.+.++..+.+++.++.++++++..        +++.|+++|++.|...+....++.|+.|+++|++..++.+.+..+|
T Consensus        65 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G  144 (394)
T TIGR00883        65 KKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG  144 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence            56677888888999999999998763        7889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653         76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE  142 (301)
Q Consensus        76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  142 (301)
                      .++++.++             ..+||+.|++.+++.++..++.. .+||+|++...+++                     
T Consensus       145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------------  202 (394)
T TIGR00883       145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRR-NLEETPVFEKAQEK---------------------  202 (394)
T ss_pred             HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHhc---------------------
Confidence            98887653             12899999998887776666555 77887743211000                     


Q ss_pred             HHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh---------
Q psy16653        143 LAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY---------  212 (301)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~---------  212 (301)
                                +++...++++.++++.  ++.......... .....+....+.|.++++ .|.+.+.....         
T Consensus       203 ----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  269 (394)
T TIGR00883       203 ----------HKKKRGPIRETLTKHR--KPFLLGLGLVIA-TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFF  269 (394)
T ss_pred             ----------cccccCCHHHHHHhch--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence                      0011223444554431  122222222222 222345666778887744 45443222111         


Q ss_pred             --------Hhhhccc----------------------------------------------------ccccCCcchhhhH
Q psy16653        213 --------IQDSLIS----------------------------------------------------MFDCIPFQVKGIA  232 (301)
Q Consensus       213 --------l~~~v~~----------------------------------------------------~~e~~p~~~R~~~  232 (301)
                              +.||+++                                                    .+|.+|++.|+++
T Consensus       270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~  349 (394)
T TIGR00883       270 ITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTG  349 (394)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeE
Confidence                    3333222                                                    7899999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHH
Q psy16653        233 TGIAV-AVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVC  270 (301)
Q Consensus       233 ~~~~~-~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~  270 (301)
                      .++.+ ....++..++|.+.+.+.++.| ++..++...+.
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            99855 4456788899999999999888 65444444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.72  E-value=1.3e-17  Score=151.66  Aligned_cols=112  Identities=9%  Similarity=-0.092  Sum_probs=95.5

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+++.++..+++++.++..++++++.+++.|++.|++.++.++....++.|++|+++|++..++...+..+|..+++.+.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667778888899999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHH
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYL  116 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l  116 (301)
                      ..     +||+.|++..++.++.++... .+||++++.
T Consensus       165 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~-~~p~~~~~~  201 (496)
T PRK03893        165 SLVVPVWGWRALFFIGILPIIFALWLRK-NLPEAEDWK  201 (496)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHHHH-hCCCchhhh
Confidence            54     899999986665555544444 789887664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.71  E-value=4.4e-17  Score=144.05  Aligned_cols=240  Identities=12%  Similarity=0.075  Sum_probs=151.5

Q ss_pred             cccccccccCccccchhhhhcc---C-----CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKE---T-----RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL   74 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~---~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~   74 (301)
                      +|+++..+..++++++...+.+   .     ++..+++.|+++|++.+...+....++.|+.|+++|++..++.+.+...
T Consensus        80 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  159 (399)
T PRK05122         80 PKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYG  159 (399)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhH
Confidence            4677777777777766655443   2     4556899999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653         75 GILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE  149 (301)
Q Consensus        75 G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  149 (301)
                      |.++++.++..     +||..+++..+..++..+... ..||++..   +++.++                         
T Consensus       160 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-------------------------  210 (399)
T PRK05122        160 ALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLAR-PRPAVPPV---KGERLP-------------------------  210 (399)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh-cCCCCCCC---Cccchh-------------------------
Confidence            88887777654     999999887777665554443 44543310   000000                         


Q ss_pred             HHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh---------------Hh
Q psy16653        150 IDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY---------------IQ  214 (301)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~---------------l~  214 (301)
                                +++.++.  .+..... ..+.   .+ ++.....+.+.++.+.|.+.......               +.
T Consensus       211 ----------~~~~~~~--~~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  273 (399)
T PRK05122        211 ----------FRRVLGR--VWPYGMG-LALA---SI-GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLI  273 (399)
T ss_pred             ----------HHHHHHH--HHHHHHH-HHHH---HH-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence                      0000000  0000000 0000   00 01122233333333332211000000               11


Q ss_pred             hhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653        215 DSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL  246 (301)
Q Consensus       215 ~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i  246 (301)
                      |+.++                                                ..|..|++.|+++.|+.+....++..+
T Consensus       274 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  353 (399)
T PRK05122        274 NRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI  353 (399)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            22111                                                568889999999999999999999999


Q ss_pred             HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCC
Q psy16653        247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKT  289 (301)
Q Consensus       247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  289 (301)
                      ++.+.+.+.++.|++..+.+.+++++++.++..+ .+++++++
T Consensus       354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  395 (399)
T PRK05122        354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hccccccc
Confidence            9999999999999988888888888877766655 44444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.70  E-value=7.3e-17  Score=142.39  Aligned_cols=232  Identities=12%  Similarity=0.008  Sum_probs=160.3

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+++..+..+++++.++..++++++.+++.|+++|++.|...+....++.|++|+++|++..++.....++|.++++.+
T Consensus        84 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l  163 (394)
T PRK10213         84 RRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPL  163 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      +..     +||+.|++.+++++++.+.....+||+|+.     + ++                               ..
T Consensus       164 ~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~~-------------------------------~~  206 (394)
T PRK10213        164 GSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-SH-------------------------------QK  206 (394)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-cc-------------------------------ch
Confidence            764     999999999887776655544356776521     0 00                               00


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHh-HHHHHHhcCCCCCcchhh-----------------Hhhhccc
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFY-SNDIFKSAGSTLDPGFSY-----------------IQDSLIS  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~~~~~-----------------l~~~v~~  219 (301)
                      .+.++.+++|..+..... ..+...    +......+ .|.+.++.|.+.+.....                 +.||..+
T Consensus       207 ~~~~~~l~~~~~~~~~~~-~~~~~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~  281 (394)
T PRK10213        207 QNTFRLLQRPGVMAGMIA-IFMSFA----GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK  281 (394)
T ss_pred             hHHHHHhcCHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            112345555533332221 111111    12233334 466666666664331111                 2222111


Q ss_pred             ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF  251 (301)
Q Consensus       220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~  251 (301)
                                                                      +.+..|+ .++...+.......++..+++.+.
T Consensus       282 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~  360 (394)
T PRK10213        282 LALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIG  360 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            5566664 356777777888899999999999


Q ss_pred             HHHHHhhCcchhHHHHHHHHHHHHHH
Q psy16653        252 GFLVRHFGSAATFWIFTVCCVVGTVF  277 (301)
Q Consensus       252 ~~l~~~~~~~~~~~~~~~~~~~~~~~  277 (301)
                      +.+.+..|++..+...+++..+..+.
T Consensus       361 G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        361 GYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHhccChhhHHHHHHHHHHHHHHH
Confidence            99999988877776666555554433

>KOG1330|consensus

Probab=99.69  E-value=1.4e-19  Score=154.76  Aligned_cols=112  Identities=11%  Similarity=0.009  Sum_probs=106.2

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      ++.++.+|..+|.++.+.++++.+||+++++|.+.|+|++...|+++.+++|.+|..+|++..+++++...+|..+|+++
T Consensus        97 R~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv  176 (493)
T KOG1330|consen   97 RKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV  176 (493)
T ss_pred             cceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc------hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653         83 GLS------TYTVIAIGCLAVPILLLVLFFLVVPETPI  114 (301)
Q Consensus        83 ~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~  114 (301)
                      +..      .|||.|+..++++++++++.+++++|+.|
T Consensus       177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            876      59999999999999999998878899864

>PRK12382 putative transporter; Provisional

Probab=99.68  E-value=1.9e-16  Score=139.66  Aligned_cols=234  Identities=15%  Similarity=0.080  Sum_probs=146.0

Q ss_pred             cccccccccCccccchhh---hhc-----cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEI---NFK-----ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL   74 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~---~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~   74 (301)
                      +|+++..+..++.++.+.   .+.     .++++.+++.|+++|++.+...+....++.|+.|+++|++++++.+.+...
T Consensus        80 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~  159 (392)
T PRK12382         80 AKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYG  159 (392)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHH
Confidence            355555555555544332   221     346778999999999999988888899999999999999999999998888


Q ss_pred             HHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653         75 GILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE  149 (301)
Q Consensus        75 G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  149 (301)
                      |..+++.++..     +||..+.+..+..++...... ..||.+..   +++.++                         
T Consensus       160 g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-------------------------  210 (392)
T PRK12382        160 ALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNG-TVRKVPAH---AGERPS-------------------------  210 (392)
T ss_pred             HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-hccCCCCC---cccCch-------------------------
Confidence            88888877653     999988776666555444333 44554310   000000                         


Q ss_pred             HHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh---------------Hh
Q psy16653        150 IDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY---------------IQ  214 (301)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~---------------l~  214 (301)
                                .++.++.  .+.........     ..+...+..+.|.++++.+.+.......               +.
T Consensus       211 ----------~~~~~~~--~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  273 (392)
T PRK12382        211 ----------LWSVVGL--IWKPGLGLALQ-----GVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMP  273 (392)
T ss_pred             ----------HHHHHHH--HHHhHHHHHHH-----HHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0000000  00000000000     0011222233333333322221000000               11


Q ss_pred             hhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653        215 DSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL  246 (301)
Q Consensus       215 ~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i  246 (301)
                      ||.++                                                ..|.+|++.|+++.|+.+....+++.+
T Consensus       274 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i  353 (392)
T PRK12382        274 DRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV  353 (392)
T ss_pred             HhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            22111                                                678899999999999999999999999


Q ss_pred             HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653        247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      +|.+.+.+.++.|++..+.+.+++.+++.++.+...
T Consensus       354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999988888888777766543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.67  E-value=2.4e-16  Score=138.65  Aligned_cols=111  Identities=10%  Similarity=-0.032  Sum_probs=96.9

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+++++.++.+++++++.+++.|++.|++.|...+....++.|+.|+++|++..++...+..+|..+++.+
T Consensus        67 ~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l  146 (382)
T PRK10091         67 LKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL  146 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence            35677888899999999999999999999999999999999999999999999999999999999999888888888776


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.++..++..+..++++||.+
T Consensus       147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        147 GTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            543     9999999999988777665554788864

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.66  E-value=5.5e-16  Score=135.73  Aligned_cols=233  Identities=16%  Similarity=0.102  Sum_probs=151.9

Q ss_pred             cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccch--hcHHHHHHHHHHHHHHHhcc
Q psy16653          7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSAL--GSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~--~~~~~~~~~~G~~~~~~i~~   84 (301)
                      ...+..+.+++.++.+.+++++.+++.|++.|.+.+...|....++.|+.|+++|++.  .+..+.+.++|..+++.++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~  146 (375)
T TIGR00899        67 ILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF  146 (375)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence            3345555667778888999999999999999988888888888899999988887754  56777777778877777765


Q ss_pred             c-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccch
Q psy16653         85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKAS  159 (301)
Q Consensus        85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (301)
                      .     +||+.|++.+++.++..+..++++||+|++...+.+                                   +.+
T Consensus       147 ~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~  191 (375)
T TIGR00899       147 WLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------------------RLE  191 (375)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------------------cch
Confidence            3     899999999998887777666568998743110000                                   001


Q ss_pred             hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc--
Q psy16653        160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS--  219 (301)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~--  219 (301)
                      .++.+++++.+.. .....+.+.    .......+.|.++.+ .|.+.......                 +.||.++  
T Consensus       192 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  266 (375)
T TIGR00899       192 VRGLLASRDTRLL-FVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR  266 (375)
T ss_pred             hhhhhcCcchHHH-HHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence            1112333322211 111111111    112223344444432 34332111000                 2233222  


Q ss_pred             ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF  253 (301)
Q Consensus       220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~  253 (301)
                                                                    ..|..|++ |+++.++.+...+++..++|.+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~  345 (375)
T TIGR00899       267 LMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGI  345 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                          66888765 5799999999999999999999999


Q ss_pred             HHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653        254 LVRHFGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       254 l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      +.+..|++..+.+.+++++++.++..+
T Consensus       346 ~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       346 LAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            999999988888888887777766544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.65  E-value=6.1e-16  Score=137.33  Aligned_cols=111  Identities=11%  Similarity=-0.040  Sum_probs=97.3

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+..++.+++++++++..+++++.++++|+++|++.+...+....++.|++|+++|++.++++.....+|..+++.+
T Consensus        80 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  159 (413)
T PRK15403         80 RRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLS  159 (413)
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677788889999999999999999999999999999987777788899999999999999999999988998888888


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.+++.++..+..++.+||++
T Consensus       160 g~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        160 GAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            754     8999999999988887766554789875

>TIGR00897 2A0118 polyol permease family

Probab=99.64  E-value=2.3e-15  Score=133.35  Aligned_cols=243  Identities=14%  Similarity=0.095  Sum_probs=156.0

Q ss_pred             cccccccccCccccchhhh---hc-cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH-H
Q psy16653          3 PVTLNQLALPDGGVGYEIN---FK-ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI-L   77 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~---~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~   77 (301)
                      +|+.+..+..+++++.++.   +. .++++.+++.|++.|++.+...+....++.|+.|+++||+.+++.+.+.++|. +
T Consensus        77 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  156 (402)
T TIGR00897        77 PLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGV  156 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777776654   23 35777888999999999988888888899999999999999999999999886 5


Q ss_pred             HHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653         78 YLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA  152 (301)
Q Consensus        78 ~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
                      +++.++..     ||+..++......++..++..++.+|.+.       .++.+       ++  +   +.++       
T Consensus       157 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~--~---~~~~-------  210 (402)
T TIGR00897       157 FGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------PQHMQ-------TR--E---KFSE-------  210 (402)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------ccccc-------CC--c---chhh-------
Confidence            67766532     65544443333333333333324454321       00000       00  0   0000       


Q ss_pred             HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhh
Q psy16653        153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQD  215 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~  215 (301)
                         ....+++++++|..+....    ..+ .+..+.+...+|.|.+.++.|.+.......                 +.|
T Consensus       211 ---~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d  282 (402)
T TIGR00897       211 ---LGKAATILFTNPNVLLGGM----VRI-INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGD  282 (402)
T ss_pred             ---HHHHHHHHHcChhHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0112345666663322221    111 122235667778888887777664332111                 333


Q ss_pred             hccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHHH
Q psy16653        216 SLIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI  242 (301)
Q Consensus       216 ~v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~  242 (301)
                      |.++                                                     ..|..| +.|+++.|+.+....+
T Consensus       283 r~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l  361 (402)
T TIGR00897       283 KLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGL  361 (402)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHH
Confidence            3221                                                     556555 5799999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653        243 GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       243 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      ++.++|.+.+.+.+..|++.++++.+++.+++.++..+
T Consensus       362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988898888888877766654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.64  E-value=7.2e-17  Score=145.00  Aligned_cols=257  Identities=12%  Similarity=-0.047  Sum_probs=158.6

Q ss_pred             ccccccccCccccchhhhhccCCeeEEee-echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIV-TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      |+.+..+..+++++.++++++++++.+.+ .|+++|++.|...+....++.|++| ++|++..++.+.+..+|..+++.+
T Consensus        84 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l  162 (455)
T TIGR00892        84 RPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL  162 (455)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH
Confidence            55666777888899999999999988765 5799999998877788888999996 799999999999999988888776


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      +..     |||+.|++.+++.++..+..++..++.+..  .+.+.++ .   +.....+...+.+.    +...+ +..+
T Consensus       163 ~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~~~~----~~~~~-~~~~  231 (455)
T TIGR00892       163 NQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---EGLPPDGSTKKLSK----KSTAE-KINR  231 (455)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---ccCCCCCccccccc----cchhh-hhhh
Confidence            654     999999999998877665555333432211  0000000 0   00000000000000    00000 0011


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhh--cc
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDS--LI  218 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~--v~  218 (301)
                      ....+++++|.++.........    . .+.+....++|.++++.|.+.......                 +.|+  ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~  306 (455)
T TIGR00892       232 FLDFSLFTHRGFLVYLSGNVIM----F-LGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR  306 (455)
T ss_pred             hcchHHhcCchHHHHHHHHHHH----H-HHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            1112456666433222211111    1 113344456666666555442221111                 1221  00


Q ss_pred             c--------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy16653        219 S--------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVT  248 (301)
Q Consensus       219 ~--------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~  248 (301)
                      .                                                  ..|.+|++.++++.|+.+....+++.++|
T Consensus       307 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp  386 (455)
T TIGR00892       307 PHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGP  386 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccc
Confidence            0                                                  77889999999999999999999999999


Q ss_pred             HHHHHHHHhhC-cchhHHHHHHHHHHHHHH
Q psy16653        249 LCFGFLVRHFG-SAATFWIFTVCCVVGTVF  277 (301)
Q Consensus       249 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  277 (301)
                      .+.+.+.+..+ ++..|.+.+++.+++.+.
T Consensus       387 ~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       387 PLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             cceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            99999998774 777777777766665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.63  E-value=6.3e-16  Score=137.01  Aligned_cols=243  Identities=9%  Similarity=-0.029  Sum_probs=157.6

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+..+..+.+++.++...+++++.+++.|++.|++.+ ..+....++.|+.|+++|++..++.+....+|.++++.++
T Consensus        84 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         84 KIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445566667777888888888999999999999999754 5677788999999999999999999999999988888776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA  158 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (301)
                      ..     +||+.|++.++..++..+..++.+||+++.. .+.+..+.+                                
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------------------  209 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV-SKKEMLHMR--------------------------------  209 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc-cchhhhHHH--------------------------------
Confidence            54     8999999999888877766654677754210 000000000                                


Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcc--hh-------------------hHhhhc
Q psy16653        159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPG--FS-------------------YIQDSL  217 (301)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~--~~-------------------~l~~~v  217 (301)
                      +..+.++++..+............    ....+..+.+.+..+.+.+.+..  ..                   .+.||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~  285 (408)
T PRK09874        210 EVVTSLKNPKLVLSLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI  285 (408)
T ss_pred             HHHHhCcCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            011122232221111111111000    01112222232222221110000  00                   022322


Q ss_pred             cc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy16653        218 IS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTL  249 (301)
Q Consensus       218 ~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~  249 (301)
                      ++                                                ..+..|++.|++..++.+....++..++|.
T Consensus       286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~  365 (408)
T PRK09874        286 GPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL  365 (408)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence            22                                                456778899999999999999999999999


Q ss_pred             HHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        250 CFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       250 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      +.+.+.++.|++..|.+.+++.+++.++.+...++
T Consensus       366 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        366 MGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888777664443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.63  E-value=5.1e-16  Score=136.96  Aligned_cols=110  Identities=9%  Similarity=-0.031  Sum_probs=95.0

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+.++..+++++.++...+++++.+++.|+++|++.+...+....++.|++|+++|++..++.+....+|..+++.++
T Consensus        68 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~  147 (392)
T PRK10473         68 KPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG  147 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777788888999999999999999999999999999999999999999999999999999988888888887776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..     +||+.|++.++.+++..++..+.+||++
T Consensus       148 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        148 HLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            43     8999999999888877776655778874

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.62  E-value=1.7e-15  Score=137.22  Aligned_cols=112  Identities=10%  Similarity=-0.043  Sum_probs=99.5

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      .|+.+.++..+++++.++++.++++..+++.|+++|++.|...+....++.|++|+++|++..++++....+|..+++.+
T Consensus        66 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  145 (485)
T TIGR00711        66 TRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL  145 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            35677788889999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPI  114 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~  114 (301)
                      +..     +||+.|++.+.++++..++.++.+||+++
T Consensus       146 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       146 GGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            754     99999999988888777666656777553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.62  E-value=3.2e-16  Score=141.55  Aligned_cols=245  Identities=11%  Similarity=-0.013  Sum_probs=149.7

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH----
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL----   79 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~----   79 (301)
                      |+.+.++..+++++.++.++++++..+++.|++.|++.+.. +....+++|++|+++||++.++.+....+|..++    
T Consensus       101 r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~  179 (476)
T PLN00028        101 RYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM  179 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677788888888899999999999999999998764 4456789999999999999999876555555444    


Q ss_pred             HHhc-----c-----chhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653         80 YCLG-----L-----STYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE  149 (301)
Q Consensus        80 ~~i~-----~-----~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  149 (301)
                      +.+.     .     .+||+.|++.+++.++..+..+++.+|.|.     ++.++.++       +. +.          
T Consensus       180 ~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~-------~~-~~----------  236 (476)
T PLN00028        180 PLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK-------SG-TM----------  236 (476)
T ss_pred             HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh-------cC-cc----------
Confidence            3321     1     279999999999998877776634444442     11111000       00 00          


Q ss_pred             HHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh----------------
Q psy16653        150 IDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY----------------  212 (301)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~----------------  212 (301)
                        ++.+....+++.++++..+..    ...... ++.....+..+.|.++.+. |++.......                
T Consensus       237 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G  309 (476)
T PLN00028        237 --PKDSFSKVLRYGVTNYRTWIL----ALTYGY-SFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGG  309 (476)
T ss_pred             --ccccHHHHHHHHHcCchhHHH----HHHHHH-HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhH
Confidence              000001123444555432211    111111 1111234556677776543 5553221111                


Q ss_pred             -Hhhhccc-------------------------------------------------------ccccCCcchhhhHHHHH
Q psy16653        213 -IQDSLIS-------------------------------------------------------MFDCIPFQVKGIATGIA  236 (301)
Q Consensus       213 -l~~~v~~-------------------------------------------------------~~e~~p~~~R~~~~~~~  236 (301)
                       +.|++++                                                       ..|+. ++.|+++.|+.
T Consensus       310 ~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~  388 (476)
T PLN00028        310 YLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLT  388 (476)
T ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhh
Confidence             4454321                                                       44544 46899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhee
Q psy16653        237 VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       237 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (301)
                      +..+++++.+++.+.+ ..+..++...|.+.+++.+++.++.++.
T Consensus       389 ~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        389 GAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            9988888888887654 2223457778888888877777666554

>PRK03699 putative transporter; Provisional

Probab=99.62  E-value=1.3e-15  Score=134.56  Aligned_cols=235  Identities=9%  Similarity=-0.024  Sum_probs=157.4

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+....+..+++++.++.+++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+....+|..+++.+.
T Consensus        72 r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         72 KRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667778888899999999999999999999999999999999999999999999999999988877777776666553


Q ss_pred             c-----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         84 L-----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        84 ~-----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      .     . +||+.|.+.+++.++..++.+ + .+.|+.  .+.+.           +++                 + + 
T Consensus       152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~--~~~~~-----------~~~-----------------~-~-  197 (394)
T PRK03699        152 AYLLARSIEWYWVYACIGLVYVAIFILTL-F-SEFPAL--GKHAP-----------KAD-----------------K-P-  197 (394)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHH-h-cCCccc--cccCc-----------ccc-----------------C-c-
Confidence            2     2 899999998888877665544 2 232310  00000           000                 0 0 


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhhccc
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDSLIS  219 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~v~~  219 (301)
                       ..++.+ ++    +........+. ...+.+.+..|.|.++++. |++.......                 +.||+++
T Consensus       198 -~~~~~~-~~----~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  270 (394)
T PRK03699        198 -VAKEKW-GI----GVLFLAIAALL-YILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDL  270 (394)
T ss_pred             -cccccC-Ch----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence             000001 11    22222222222 2223456778899998654 6553222111                 3444333


Q ss_pred             ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF  251 (301)
Q Consensus       220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~  251 (301)
                                                                      ..|..|.+ ++...+.....+.+++.++|.+.
T Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~  349 (394)
T PRK03699        271 QRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVT  349 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHH
Confidence                                                            34555543 57788899999999999999999


Q ss_pred             HHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653        252 GFLVRHFGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      +++.+..|++..++..+++++++.+++..
T Consensus       350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        350 SPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            99999999988888877777776654433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=4.1e-15  Score=128.50  Aligned_cols=249  Identities=14%  Similarity=0.047  Sum_probs=159.7

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++....++++.+.+.|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.+
T Consensus        63 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  142 (352)
T cd06174          63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL  142 (352)
T ss_pred             CchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHH
Confidence            46677788888889999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      +..     +||+.+++.+++.++..+... +++  |+....        -...-...   ..........         .
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--------~~~~~~~~---~~~~~~~~~~---------~  199 (352)
T cd06174         143 GGLLAESLGWRWLFLILAILGLLLALLLL-FLL--RLLLLL--------ALAFFLLS---FGYYGLLTYL---------P  199 (352)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHH--------HHHHHHHH---hHHHHHHHHH---------H
Confidence            765     799999999998888777766 444  211000        00000000   0000000000         0


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh------------Hhhh---------
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY------------IQDS---------  216 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~------------l~~~---------  216 (301)
                      .-..+.+... ........... .....    ........+.+..+.........            ..++         
T Consensus       200 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (352)
T cd06174         200 LYLQEVLGLS-AAEAGLLLSLF-GLGGI----LGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL  273 (352)
T ss_pred             HHHHHhcCCC-HHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            0001111111 11111111111 11111    11111111222221110000000            0000         


Q ss_pred             ---c----------ccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653        217 ---L----------ISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       217 ---v----------~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                         +          ....|..|++.|++..|+.+...+++..+++.+.+.+.+..+++..+.+.+++.+++.++.++
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence               0          008899999999999999999999999999999999999889988999988888887776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.61  E-value=4.1e-15  Score=135.16  Aligned_cols=112  Identities=10%  Similarity=-0.118  Sum_probs=97.4

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYLYC   81 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~~~   81 (301)
                      +|+.+.++..++++++++++++++++.++++|+++|+|.|...+.....+.+++ |+++|++..+++.....+|..+++.
T Consensus        70 rk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~  149 (495)
T PRK14995         70 FKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL  149 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788899999999999999999999999999999999998888887776665 7899999999999999999999988


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPI  114 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~  114 (301)
                      ++..     +||+.|++.....++.+++..+++||+|.
T Consensus       150 lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        150 VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            8765     99999999988887776666657888763

>PRK10504 putative transporter; Provisional

Probab=99.61  E-value=3.7e-15  Score=134.73  Aligned_cols=110  Identities=11%  Similarity=-0.030  Sum_probs=94.1

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+..+..+++++.+++.++++++.+++.|+++|++.|...+....++.|++|+++|++..++.+....+|..+++.++
T Consensus        75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  154 (471)
T PRK10504         75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG  154 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            55666777788888888889999999999999999999999999999999999999999999999998888988888776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..     +||+.|++......+..++.....|+++
T Consensus       155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        155 GLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            54     9999999988877776666664556544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.61  E-value=1.2e-15  Score=134.98  Aligned_cols=109  Identities=9%  Similarity=-0.014  Sum_probs=94.1

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+++..+..+.+++.++...+++++.+.+.|+++|++.|...|....++.|+.|+++|++..++.+....+|..+++.+
T Consensus        75 ~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l  154 (400)
T PRK11646         75 AKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALL  154 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677788888889999999999999999999999999988888899999999999999999999999999999998888


Q ss_pred             ccc----hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         83 GLS----TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        83 ~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                      +..    +||+.|++.++..++..++..++.||
T Consensus       155 ~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        155 GSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            765    99999999888877665554435665

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.61  E-value=2.9e-15  Score=135.72  Aligned_cols=239  Identities=12%  Similarity=0.045  Sum_probs=155.4

Q ss_pred             cccccCccccchhhhhcc---CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          7 NQLALPDGGVGYEINFKE---TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      +..+....+++....++.   .+++.+.+.+++.|++.+...+...+++.|++|+++||+..++.+.+..+|.+++..+.
T Consensus        84 ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~  163 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA  163 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555454   46667888999999999889999999999999999999999999999999988887554


Q ss_pred             c-----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653         84 L-----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK  157 (301)
Q Consensus        84 ~-----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
                      .     . |||..|++.++..++..+..+ ++||+++.-    +.++             ...             +...
T Consensus       164 ~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~----~~~~-------------~~~-------------~~~~  212 (491)
T PRK11010        164 LWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTI----PVPK-------------TLE-------------QAVV  212 (491)
T ss_pred             HHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcccc----cccc-------------chh-------------hhHH
Confidence            3     2 899999999988888777666 688876321    0000             000             0001


Q ss_pred             chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHH-HhcCCCCCcchhh------------------Hhhhcc
Q psy16653        158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIF-KSAGSTLDPGFSY------------------IQDSLI  218 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~~~~~~~------------------l~~~v~  218 (301)
                      .++++.++++..+..... ..+...    +......+.+.++ ++.|++.+.....                  +.||++
T Consensus       213 ~~l~~~~~~~~~~~~ll~-~~l~~~----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g  287 (491)
T PRK11010        213 APLRDFFGRNNAWLILLL-IVLYKL----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLS  287 (491)
T ss_pred             HHHHHHHcCcCHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            123444444422221111 111111    1222233334343 3344442211100                  122211


Q ss_pred             c----------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653        219 S----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL  246 (301)
Q Consensus       219 ~----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i  246 (301)
                      .                                                    ..++.|++.+++..++.+....++..+
T Consensus       288 ~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~  367 (491)
T PRK11010        288 LFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY  367 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            1                                                    678889999999999999999999998


Q ss_pred             HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhee
Q psy16653        247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (301)
                      ++.+.+.+.+..||+..|.+.+++++++.++.+..
T Consensus       368 ~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        368 VGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999888888888888877666654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.60  E-value=1.2e-15  Score=132.70  Aligned_cols=103  Identities=9%  Similarity=-0.192  Sum_probs=87.2

Q ss_pred             ccccccccCccccchhhhhccC-----CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKET-----RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY   78 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~   78 (301)
                      |+.+.++..+.+++.++.....     +++.+++.|++.|++.+...+....++.|+.|+++|++..++.+....+|.++
T Consensus        64 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  143 (365)
T TIGR00900        64 KKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV  143 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH
Confidence            4556666666677777766666     89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         79 LYCLGLS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        79 ~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      ++.++..     +||+.|++.++..++..+..+
T Consensus       144 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       144 GPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9888765     999999998887766555444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.60  E-value=4.6e-15  Score=130.46  Aligned_cols=234  Identities=9%  Similarity=-0.056  Sum_probs=153.8

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+.++..+.+++.++.+.+++++.+++.|+++|++.|...+.....+.|..++++|++.++.++.+.++|..+++.++
T Consensus        71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633         71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667788888889999999999999999999999999998888888888999999999999999999999999999887


Q ss_pred             cc----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccch
Q psy16653         84 LS----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKAS  159 (301)
Q Consensus        84 ~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (301)
                      ..    .++...+..+........+.+...+|++.      +             +                   ++..+
T Consensus       151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------------~-------------------~~~~~  192 (381)
T PRK03633        151 SKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA------E-------------N-------------------HDSTS  192 (381)
T ss_pred             hcccccccchHHHHHHHHHHHHHHHHHhcccCCCC------C-------------C-------------------CCCCC
Confidence            65    22222333222222222222112222110      0             0                   00112


Q ss_pred             hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc---
Q psy16653        160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS---  219 (301)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~---  219 (301)
                      .++.+++|..+. ....+....    ........+.|.++++.|.+.+.....                 +.||.++   
T Consensus       193 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  267 (381)
T PRK03633        193 IWPMLKLRQARL-GVNGCIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV  267 (381)
T ss_pred             HHHHHHhcchHH-HHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH
Confidence            334455543221 111111111    113344556787777766553221111                 3344322   


Q ss_pred             ------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16653        220 ------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH  257 (301)
Q Consensus       220 ------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~  257 (301)
                                                                ..|..|++.++.+.+..+....+|..++|.+.+++.++
T Consensus       268 l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~  347 (381)
T PRK03633        268 LRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN  347 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                      67888888888888888888999999999999999999


Q ss_pred             hCcchhHHHHHHHHHHHHHHhhe
Q psy16653        258 FGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      .+++..|.+.+.+.++..+..+.
T Consensus       348 ~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        348 YSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHh
Confidence            99988888888777766655544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.60  E-value=4.5e-15  Score=131.63  Aligned_cols=110  Identities=8%  Similarity=-0.103  Sum_probs=93.0

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+.++..+++++.++...+++++.+++.|+++|++.+...+....++.|.+|+++|++..++......+|..+++.++
T Consensus        78 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  157 (406)
T PRK15402         78 RPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG  157 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667778888889999999999999999999999999988899999999999999999998888877777777777665


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..     +||+.|++.++..++..+..++.+||++
T Consensus       158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        158 AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            43     9999999999888877766554678875

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.59  E-value=5.9e-15  Score=129.64  Aligned_cols=111  Identities=18%  Similarity=0.058  Sum_probs=97.0

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.+
T Consensus        69 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  148 (385)
T TIGR00710        69 RRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL  148 (385)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777788888999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.++..++..+..++..||++
T Consensus       149 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       149 GGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            754     8999999998888877766664678765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.58  E-value=5.1e-15  Score=131.01  Aligned_cols=234  Identities=10%  Similarity=-0.032  Sum_probs=164.6

Q ss_pred             cccccccccCccccchhhhhcc-----CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKE-----TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL   77 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~   77 (301)
                      ||+...+++.+.++..++.+++     ++++.+++.|++.|++ |..++.....+++|+|+++||++.++.....++|..
T Consensus        99 ~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~  177 (462)
T PRK15034         99 GRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVS  177 (462)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHH
Confidence            5677888888888898888876     8999999999999998 789999999999999999999999999665556655


Q ss_pred             HHHHhcc----------------------c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcC
Q psy16653         78 YLYCLGL----------------------S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRG  134 (301)
Q Consensus        78 ~~~~i~~----------------------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~  134 (301)
                      ++..+..                      . +||...++..++.++..++.++.++|.|.   .                
T Consensus       178 l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~----------------  238 (462)
T PRK15034        178 VMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---S----------------  238 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---c----------------
Confidence            4333220                      1 58999999888888877777745454331   0                


Q ss_pred             CCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchh-h-
Q psy16653        135 SRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFS-Y-  212 (301)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~-  212 (301)
                                         +.+..+..+.+|+|+.|...++     ++..+.++..+.+++|++.++. ++...... . 
T Consensus       239 -------------------~~~~~~~~~vlk~~~~Wllsll-----y~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~  293 (462)
T PRK15034        239 -------------------RASIADQLPVLQRLHLWLLSLL-----YLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAF  293 (462)
T ss_pred             -------------------ccCHHHHHHHhCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHH
Confidence                               0011234556777743332222     2334445666778888888774 33111111 0 


Q ss_pred             ---------------Hhhhccc------------------------------------------------------cccc
Q psy16653        213 ---------------IQDSLIS------------------------------------------------------MFDC  223 (301)
Q Consensus       213 ---------------l~~~v~~------------------------------------------------------~~e~  223 (301)
                                     +.||+++                                                      +...
T Consensus       294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~  373 (462)
T PRK15034        294 FGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVI  373 (462)
T ss_pred             HHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHH
Confidence                           5566444                                                      5666


Q ss_pred             CCc---------------------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhhee
Q psy16653        224 IPF---------------------QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       224 ~p~---------------------~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  281 (301)
                      +|+                     +.-|..+|+....+.+|+++.|.+++...+..| +...|..+.+.+++|.++.+.+
T Consensus       374 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        374 FRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            664                     145788999999999999999999998888766 4456778888888888776653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.57  E-value=5.7e-16  Score=134.20  Aligned_cols=111  Identities=14%  Similarity=0.034  Sum_probs=94.1

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|.++++.+
T Consensus        61 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l  140 (352)
T PF07690_consen   61 RRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL  140 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch
Confidence            35667777888888866666667778999999999999999999999999999999999999999999999999999888


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.+++.++..++..++++|+|
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  141 GGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP  176 (352)
T ss_dssp             HHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred             hhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence            765     8999999999999998876444666655

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.57  E-value=1.3e-14  Score=128.50  Aligned_cols=110  Identities=10%  Similarity=0.000  Sum_probs=92.1

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+..+..+.+++.++..++++++.+++.|+++|++.+...+....++.|+.|+++|++..+.......+|..+++.+
T Consensus        70 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  149 (401)
T PRK11043         70 RKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL  149 (401)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777788888999999999999999999999999988888888999999999999999888877777777777766


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.+++.++..+..+ +++|++
T Consensus       150 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~  184 (401)
T PRK11043        150 GAWLLNHFGWQAIFATLFAITLLLILPTL-RLKPSK  184 (401)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence            543     999999999988888777666 566554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.56  E-value=2.7e-14  Score=126.09  Aligned_cols=108  Identities=10%  Similarity=-0.033  Sum_probs=88.9

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+++.++..+++++++.++++.+.   ++.|+++|++.|...|...+++.|+.|+++|+++.++.+.....|.++++.+
T Consensus        67 rr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~l  143 (393)
T PRK11195         67 KGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVL  143 (393)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888888887777664   7889999999999999999999999999999999999999999999999999


Q ss_pred             ccc----hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653         83 GLS----TYTVIAIGCLAVPILLLVLFFLVVPETPI  114 (301)
Q Consensus        83 ~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~  114 (301)
                      ++.    .|+..+.+.+...++..+... .+||+|.
T Consensus       144 gG~l~~~~~~~~~~i~~~~~~~~~~~~~-~l~~~~~  178 (393)
T PRK11195        144 GGALADPHAEAALAVCALIYLLAALFNL-FIPRLGA  178 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcc
Confidence            876    566666666555444444444 7898763

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.56  E-value=1.9e-14  Score=127.05  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=79.5

Q ss_pred             cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCc--cchhcHHHHHHHHHHHHHHHhcc
Q psy16653          7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYL--SALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      +..+..+.+++.++.+++.+++.+++.+.+.|...+...|....++.|+.++++|  +...++.+.+.++|.++++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~  164 (393)
T PRK15011         85 IVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3444555567777778888888876655554444456778888888998877666  34557888888888888888875


Q ss_pred             c-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      .     |||..|++.++..++..+..++++||+|
T Consensus       165 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        165 ALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            4     9999999999888877776665788875

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.56  E-value=8.1e-15  Score=124.76  Aligned_cols=239  Identities=15%  Similarity=0.069  Sum_probs=176.5

Q ss_pred             cccccccccCccccchhhhhccCCee---EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTV---SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      ||+...+++.+..+-.+..+++.+..   .+++.+++.|++- +.+++...++++|+||+++|.+++++. ..++|..+.
T Consensus        78 gR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          78 GRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence            56677777888888888888887777   9999999999975 689999999999999999999999999 888888877


Q ss_pred             HHhccc-----h---hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q psy16653         80 YCLGLS-----T---YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREID  151 (301)
Q Consensus        80 ~~i~~~-----~---Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
                      ..++..     +   ||..-.+..++.++..++.++.+.|.|..-..++..                             
T Consensus       156 q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~-----------------------------  206 (417)
T COG2223         156 QLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ-----------------------------  206 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc-----------------------------
Confidence            777654     6   999999999988888888876777777431000000                             


Q ss_pred             HHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653        152 AAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I  213 (301)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l  213 (301)
                          .+...+.++++++.|.     +.+.++..|.++-.+..++|.++++. |.+....-..                 +
T Consensus       207 ----~~~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~L  277 (417)
T COG2223         207 ----LPAQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWL  277 (417)
T ss_pred             ----chhHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchh
Confidence                0023455555654332     22334456666788999999999986 4442221111                 6


Q ss_pred             hhhccc-------------------------------------------------------ccccCCcchhhhHHHHHHH
Q psy16653        214 QDSLIS-------------------------------------------------------MFDCIPFQVKGIATGIAVA  238 (301)
Q Consensus       214 ~~~v~~-------------------------------------------------------~~e~~p~~~R~~~~~~~~~  238 (301)
                      +||++.                                                       ++..+|.+ -|...|+...
T Consensus       278 sDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga  356 (417)
T COG2223         278 SDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGA  356 (417)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHH
Confidence            777555                                                       55555554 4778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheec
Q psy16653        239 VNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       239 ~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      .+.+|++..|..++...+..| +...|.++..+++++.+..+...
T Consensus       357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888 66778888888888887665533

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.54  E-value=1.1e-14  Score=127.74  Aligned_cols=111  Identities=15%  Similarity=0.076  Sum_probs=96.7

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++...+++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.+
T Consensus        55 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  134 (377)
T PRK11102         55 RKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII  134 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777888888999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.+++.++..+...+.+||++
T Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        135 GGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            654     8999999998888877666554778864

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.52  E-value=1.3e-13  Score=128.12  Aligned_cols=195  Identities=14%  Similarity=0.094  Sum_probs=119.7

Q ss_pred             eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---------------------
Q psy16653         27 TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS---------------------   85 (301)
Q Consensus        27 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~---------------------   85 (301)
                      +..++++|+++|+|.+..++.+..|+.|++|+++|+++.++++.+..+|..+++++++.                     
T Consensus       172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~  251 (633)
T TIGR00805       172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT  251 (633)
T ss_pred             ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence            44567899999999999999999999999999999999999999999999999887532                     


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHhcccccc-hhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653         86 ------TYTVIAIGCLAVPILLLVLFFLVVPET-PIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA  158 (301)
Q Consensus        86 ------~Wr~~f~~~~~~~~~~~~~~~~~~~Es-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (301)
                            +||..|++.+++.++..+..+ ++|+. |+.- .+.+.++.++.  +.++.+.....+   .   ....+....
T Consensus       252 dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~lp~~~-~~~~~~~~~~~--~~~~~~~~~~~~---~---~~~~~~~~~  321 (633)
T TIGR00805       252 DPRWIGAWWIGFLICGGVALLTSIPFF-FFPKALPKEG-KRVNVDVHETE--KLEKSEDKSRKK---N---SDITKDFPK  321 (633)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCcc-cccchhhhhhh--cccccccccchh---h---hhhHHHHHH
Confidence                  288889999999988777665 66654 3210 00010000000  000000000000   0   000011123


Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhhHhhhcccccccCCcchhhhHHHHHH
Q psy16653        159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAV  237 (301)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~  237 (301)
                      .+++++++|.++...+....     ...+.+.+..|+|.++++. |++                        ....++..
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~-----~~~~~~~~~~~lP~yl~~~~g~s------------------------~~~ag~l~  372 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVI-----DSLAFNGYITFLPKYLENQYGIS------------------------SAEANFLI  372 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCc------------------------HHHHHHHh
Confidence            46678888744333333222     2223677888999999874 544                        22233333


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhhCc
Q psy16653        238 AVNWI-GAFLVTLCFGFLVRHFGS  260 (301)
Q Consensus       238 ~~~~~-~~~i~~~~~~~l~~~~~~  260 (301)
                      ....+ +.+++.++.+++.+..+.
T Consensus       373 ~~~~i~~~~vG~~l~G~l~~r~~~  396 (633)
T TIGR00805       373 GVVNLPAAGLGYLIGGFIMKKFKL  396 (633)
T ss_pred             hhhhhhHHHHHHhhhhheeeeecc
Confidence            33333 456777777888887664

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10054 putative transporter; Provisional

Probab=99.50  E-value=3.2e-14  Score=125.61  Aligned_cols=110  Identities=13%  Similarity=-0.023  Sum_probs=92.2

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++..++++++.+++.|.+.|.+.+...+....+..|..|+++|++..++.....++|..+++.+
T Consensus        72 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l  151 (395)
T PRK10054         72 KKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPL  151 (395)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777888888888899998888889988888777888899999999999999999999999999999999888


Q ss_pred             ccc----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         83 GLS----TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        83 ~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      +..    +||..|++.++..++..+...+++||+
T Consensus       152 ~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        152 GTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            766    899999998888777655554356654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.45  E-value=3.3e-13  Score=118.74  Aligned_cols=216  Identities=12%  Similarity=-0.011  Sum_probs=142.8

Q ss_pred             hhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHH
Q psy16653         20 INFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGC   94 (301)
Q Consensus        20 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~   94 (301)
                      ....+++++.+++.|.++|.+.+...|....+..|+  +++|++..+......++|.++++.++..     |||..|++.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            444678899999999999999888889888888775  5788999999999999999999887655     999999887


Q ss_pred             HHHHHHHHHHHhcccccch-hHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHH
Q psy16653         95 LAVPILLLVLFFLVVPETP-IYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRAL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~~~~~Esp-~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (301)
                      .+...+.+ +.. .++|++ +.    ++ ++           +               +++++..+.++++++|..+...
T Consensus       165 ~~~~~~~~-~~~-~~~~~~~~~----~~-~~-----------~---------------~~~~~~~~~~~~l~~~~~~~~l  211 (382)
T TIGR00902       165 TAGLAFML-IGF-LIKPTIPPK----DA-IP-----------E---------------DESQGDSAFIALLKNPMNLRFL  211 (382)
T ss_pred             HHHHHHHH-HHH-HcCCCCCCC----cc-cc-----------c---------------cccccchhHHHHHcChHHHHHH
Confidence            66533333 333 334432 10    00 00           0               0000112356677776443333


Q ss_pred             HHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-----------------
Q psy16653        174 IISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-----------------  219 (301)
Q Consensus       174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-----------------  219 (301)
                      ....+...     +......+.|.++++.|.+.+.....                 +.||.+.                 
T Consensus       212 ~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~  286 (382)
T TIGR00902       212 AAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI  286 (382)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            22222221     24556667888888877663322111                 2233222                 


Q ss_pred             -------------------------------ccccCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhCcchhHHHH
Q psy16653        220 -------------------------------MFDCIPFQVKGIATGIAVA-VNWIGAFLVTLCFGFLVRHFGSAATFWIF  267 (301)
Q Consensus       220 -------------------------------~~e~~p~~~R~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~~~  267 (301)
                                                     +.+. |++.|+++.++.+. ...++..+++.+.|++.|+.|. ..|.+.
T Consensus       287 ~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~  364 (382)
T TIGR00902       287 IGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM  364 (382)
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence                                           6676 99999999999874 5668889999999999999986 667777


Q ss_pred             HHHHHHHHHH
Q psy16653        268 TVCCVVGTVF  277 (301)
Q Consensus       268 ~~~~~~~~~~  277 (301)
                      +++.+++.++
T Consensus       365 ~~~~~~~~~~  374 (382)
T TIGR00902       365 AIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHH
Confidence            7777766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.44  E-value=4.7e-13  Score=118.57  Aligned_cols=109  Identities=9%  Similarity=-0.080  Sum_probs=85.0

Q ss_pred             cccccccCccccchhhhhccC---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH
Q psy16653          5 TLNQLALPDGGVGYEINFKET---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC   81 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~   81 (301)
                      +.+.++..+.+++....++.+   +++.+.+..++.+...+...+...+++.|+.|+++|++..++...+..+|.+++..
T Consensus        69 ~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~  148 (402)
T PRK11902         69 GWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGG  148 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhH
Confidence            356666666666666666653   45566777777788888888999999999999999999999999999999988877


Q ss_pred             hccc------hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653         82 LGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPI  114 (301)
Q Consensus        82 i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~  114 (301)
                      ++..      |||..|++.++..++..+..+ ++||+++
T Consensus       149 l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~-~~~e~~~  186 (402)
T PRK11902        149 LALWLADRVLGWGNTYLLMAGLMLAGALTTL-WAPEPEV  186 (402)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcc
Confidence            5432      899999999988877666555 7788753

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.43  E-value=3.9e-13  Score=134.06  Aligned_cols=112  Identities=13%  Similarity=-0.094  Sum_probs=80.7

Q ss_pred             ccccccccCccccch---hhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGY---EINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+++.++..+..++.   .+...+.+++.+++.|+++|++.|...+....++.|++|+++|++++++.+.+..+|.++++
T Consensus        77 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~  156 (1146)
T PRK08633         77 NRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT  156 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence            344444544433333   33445678999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhccc--------------hhHHHHHHHHHHHHHHHHHHhcccccchhH
Q psy16653         81 CLGLS--------------TYTVIAIGCLAVPILLLVLFFLVVPETPIY  115 (301)
Q Consensus        81 ~i~~~--------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~  115 (301)
                      .++..              +|++.+.+..+...++.++..+.+||+|..
T Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (1146)
T PRK08633        157 ALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA  205 (1146)
T ss_pred             HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence            87654              234444444444333333333378888753

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.43  E-value=4.6e-13  Score=118.28  Aligned_cols=111  Identities=13%  Similarity=0.017  Sum_probs=94.5

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++...+++++.+++.|++.|++.|...+....+..|..++++|++..++.+.+..+|..+++.+
T Consensus        72 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  151 (394)
T PRK11652         72 RRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI  151 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888889999999999999999999999999988888888899999999999999999999999888888777


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..     +||+.|++.++..++..+...+++||++
T Consensus       152 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        152 GGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            644     8999999998887766655544788875

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.41  E-value=7.6e-13  Score=115.54  Aligned_cols=110  Identities=9%  Similarity=-0.133  Sum_probs=83.4

Q ss_pred             ccccccccCccccchhhhhccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          4 VTLNQLALPDGGVGYEINFKET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      |+.+.++..+.+++.++..+++ +++.+++.|+++|++.+ ..+....+++|++|+++|++..++......+|..+++.+
T Consensus        67 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i  145 (366)
T TIGR00886        67 RYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV  145 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            5667778888899999999999 99999999999999865 556778899999999999999999886555555555443


Q ss_pred             cc--------------c-hhHHHH-HHHHHHHHHHHHHHhcccccchh
Q psy16653         83 GL--------------S-TYTVIA-IGCLAVPILLLVLFFLVVPETPI  114 (301)
Q Consensus        83 ~~--------------~-~Wr~~f-~~~~~~~~~~~~~~~~~~~Esp~  114 (301)
                      +.              . +||+.| +..++...+..++.++..+|+|+
T Consensus       146 ~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            21              1 699999 44455555555444446777763

>TIGR00889 2A0110 nucleoside transporter

Probab=99.38  E-value=2.7e-12  Score=114.17  Aligned_cols=247  Identities=11%  Similarity=0.060  Sum_probs=148.1

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhh----hh----ccCCCCCccchhcHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNML----QK----EGDAPTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~----i~----e~~~~~~Rg~~~~~~~~~~~~G   75 (301)
                      |+.+.++..+.+++..+..+.++++.+.+.|++.|++.+...+.....    ..    |......|.|..+.  .+..+|
T Consensus        69 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig  146 (418)
T TIGR00889        69 QKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAA  146 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHH
Confidence            445666677777788888888889999999999999876666654433    22    44444556666663  455555


Q ss_pred             HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHh
Q psy16653         76 ILYLYCLGLS-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAA  154 (301)
Q Consensus        76 ~~~~~~i~~~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
                      ..++..++.. .|+ .|++.++..++..++.+ ++||+|+-   +.+ ++          .  +..           + .
T Consensus       147 ~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~---~~~-~~----------~--~~~-----------~-~  196 (418)
T TIGR00889       147 MWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVA---KST-AK----------M--SIK-----------V-M  196 (418)
T ss_pred             HHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCC---ccc-cc----------c--CHH-----------H-H
Confidence            5555544333 465 45566666666666555 88998631   000 00          0  000           0 0


Q ss_pred             hccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcc------hhh----------------
Q psy16653        155 RKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPG------FSY----------------  212 (301)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~------~~~----------------  212 (301)
                       .+.+.++.+++|.++...+..+.....     ......+.+.++.+.|.+....      ...                
T Consensus       197 -~~~~~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~  270 (418)
T TIGR00889       197 -LGLDAFILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILT  270 (418)
T ss_pred             -hhhhHHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence             011223455565433322222222221     1222344455555544331110      000                


Q ss_pred             ---Hhhhccc----------------------------------------------------ccccCCcchhhhHHHHHH
Q psy16653        213 ---IQDSLIS----------------------------------------------------MFDCIPFQVKGIATGIAV  237 (301)
Q Consensus       213 ---l~~~v~~----------------------------------------------------~~e~~p~~~R~~~~~~~~  237 (301)
                         +.||+++                                                    ++|.+|++.|+++.|+.+
T Consensus       271 ~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~  350 (418)
T TIGR00889       271 IPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT  350 (418)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence               2222211                                                    789999999999999997


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhh------CcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653        238 -AVNWIGAFLVTLCFGFLVRHF------GSAATFWIFTVCCVVGTVFTFMVVPETKGK  288 (301)
Q Consensus       238 -~~~~~~~~i~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  288 (301)
                       ....++..++|.+.+.+.++.      ||+..|.+.+++.++++++.+++.||+++.
T Consensus       351 ~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       351 LMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence             567899999999999999984      477788888888888888888888887554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.37  E-value=1.8e-12  Score=115.88  Aligned_cols=81  Identities=11%  Similarity=-0.120  Sum_probs=69.8

Q ss_pred             cccccccccCccccchhhh---hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEIN---FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      +|+.+.+++.+++++.+++   ..++++..++++|+++|+|.|...+....++.|+.|+++|.+.+++.+....+|..++
T Consensus        90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g  169 (438)
T PRK10133         90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA  169 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence            4667888889999998875   5689999999999999999999999999999999888887777888888888888888


Q ss_pred             HHhc
Q psy16653         80 YCLG   83 (301)
Q Consensus        80 ~~i~   83 (301)
                      +.++
T Consensus       170 ~~~g  173 (438)
T PRK10133        170 VVFG  173 (438)
T ss_pred             HHHH
Confidence            7653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.36  E-value=2e-12  Score=128.88  Aligned_cols=97  Identities=8%  Similarity=-0.018  Sum_probs=81.6

Q ss_pred             cchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHH
Q psy16653         16 VGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVI   90 (301)
Q Consensus        16 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~   90 (301)
                      ...++.....+++.++++|+++|++.+...|...+++.|++|+++|++++++.+++.++|.++++.+++.     +|++.
T Consensus        97 ~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~  176 (1140)
T PRK06814         97 ALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVIL  176 (1140)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            3334444558899999999999999999999999999999999999999999999999999999999876     89999


Q ss_pred             HHHHHHHHHHHHHHHhcccccch
Q psy16653         91 AIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        91 f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      |....+..++.+++.+ ++|+++
T Consensus       177 ~~~~~~~~~~~~~~~~-~~~~~~  198 (1140)
T PRK06814        177 VALLMGIAVLGWLASL-FIPKTG  198 (1140)
T ss_pred             HHHHHHHHHHHHHHHh-hCCCCC
Confidence            9666666665555555 777764

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.35  E-value=3.3e-12  Score=114.29  Aligned_cols=108  Identities=16%  Similarity=0.034  Sum_probs=80.7

Q ss_pred             ccccccCccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHH
Q psy16653          6 LNQLALPDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILY   78 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~   78 (301)
                      .+.++...++++.++....++.      ..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++
T Consensus        72 ~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l  151 (437)
T TIGR00792        72 WLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL  151 (437)
T ss_pred             hHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777776653      34456677778877777777788889987 5789999999988888887665


Q ss_pred             HHHhc-----------cc-hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         79 LYCLG-----------LS-TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        79 ~~~i~-----------~~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..+.           .. +||+.+.+.++++++..+..++.++|.+
T Consensus       152 ~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       152 VAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            54331           12 8999999999999888777765788865

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.35  E-value=5e-12  Score=110.13  Aligned_cols=107  Identities=12%  Similarity=-0.088  Sum_probs=80.8

Q ss_pred             cccccCccccchhhhhccC---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          7 NQLALPDGGVGYEINFKET---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      +..+..+.++.....++..   +.+.+....++.+...+...+...+++.|++|+++|+++.++.+.+..+|.++++.++
T Consensus        60 l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~  139 (356)
T TIGR00901        60 LVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA  139 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555553   3334555666777777778888899999999999999999999999999999988886


Q ss_pred             cc-----h--------hHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 LS-----T--------YTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ~~-----~--------Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..     +        ||..|++.++..++..+..++..||++
T Consensus       140 ~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       140 LVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            43     6        999999999988877766653467753

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.34  E-value=2.5e-12  Score=114.02  Aligned_cols=103  Identities=12%  Similarity=-0.093  Sum_probs=85.9

Q ss_pred             ccccccccCccccchhhhhc---cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFK---ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+...+++.+++++.++...   .++++.+++.|++.|+|.|...+....++.|..|+++|++..++.+....+|..+++
T Consensus        68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~  147 (410)
T TIGR00885        68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM  147 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            55677788888888877533   468889999999999999999999999999999999999999999998888888887


Q ss_pred             Hhccc-------------------------------hhHHHHHHHHHHHHHHHHHHh
Q psy16653         81 CLGLS-------------------------------TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        81 ~i~~~-------------------------------~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      .++..                               +||++|++.+++.++..++..
T Consensus       148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~  204 (410)
T TIGR00885       148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM  204 (410)
T ss_pred             HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66431                               499999999988877665543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.31  E-value=1.2e-12  Score=114.66  Aligned_cols=193  Identities=8%  Similarity=-0.025  Sum_probs=127.1

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+++.+++..+++..++.++++++..+.+.|++.|+++|+.. ....|+..|+|+++|+++.+++..+..+|.++++++
T Consensus        91 ~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L  169 (511)
T TIGR00806        91 YKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL  169 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788889999999999999999999999999999999999999 999999999999999999999999999999999988


Q ss_pred             ccc----hhHHHHHHH---HHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHH--HHH
Q psy16653         83 GLS----TYTVIAIGC---LAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREI--DAA  153 (301)
Q Consensus        83 ~~~----~Wr~~f~~~---~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  153 (301)
                      +..    |||..+.+.   .....+.+++.+ ++|-.++-+.-+++.+.......+....+.+...+..+..+..  ..-
T Consensus       170 ~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~-~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (511)
T TIGR00806       170 GQLLVTLGWISYSTLNIISLVFMTFSVFLAL-FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFL  248 (511)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHH
Confidence            765    888755543   333344444554 8896666554443221100000000111001000000000000  000


Q ss_pred             hhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc
Q psy16653        154 ARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA  202 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  202 (301)
                      +.-..++++..++     +.++-..+|+....+|++-+.+|.-.+.+..
T Consensus       249 ~~l~~~~~~~y~n-----~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v  292 (511)
T TIGR00806       249 VRMLSELVTIYRN-----PQLLLWSLWWVFNSAGYYLITYYVHTLWGTL  292 (511)
T ss_pred             HHHHHHHHHHhcC-----cchhhhhHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            0011223333444     3455566777777778889999998888776

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00896 CynX cyanate transporter

Probab=99.31  E-value=1.4e-11  Score=107.19  Aligned_cols=96  Identities=14%  Similarity=-0.005  Sum_probs=77.3

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+.+.++..+.+++.+.. .+++++.+++.|++.|++.|...+....++.|++| ++|++..++.+.+..+|..+++.+.
T Consensus        65 r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        65 ERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             hHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence            556666776777777777 77888999999999999999888888889999986 6899999999999888888877665


Q ss_pred             cc-------hhHHHHHHHHHHHHHH
Q psy16653         84 LS-------TYTVIAIGCLAVPILL  101 (301)
Q Consensus        84 ~~-------~Wr~~f~~~~~~~~~~  101 (301)
                      ..       +||+.|.+.+++.++.
T Consensus       143 ~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            33       3999998877655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.30  E-value=2.6e-11  Score=106.69  Aligned_cols=214  Identities=13%  Similarity=0.024  Sum_probs=133.9

Q ss_pred             hhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHH
Q psy16653         21 NFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCL   95 (301)
Q Consensus        21 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~   95 (301)
                      ...+++++.+++.|++.|++.+...|...+++.++  +++|++..+..+.+.++|..+++.++..     |||..|++.+
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            34568889999999999999888888888888877  4568888888888888888888888765     9999999888


Q ss_pred             HHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHH
Q psy16653         96 AVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALII  175 (301)
Q Consensus        96 ~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (301)
                      +..++..+... ..||.++    +++.++                           +.++...++++++++|..+.....
T Consensus       166 ~~~~~~~~~~~-~~~~~~~----~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~~~~~  213 (382)
T PRK11128        166 AGVASMLLGQL-LRPTIMP----QGESRQ---------------------------QESAGWPAWKALLKEPTVWRFLLC  213 (382)
T ss_pred             HHHHHHHHHHH-ccCCCCC----cccccc---------------------------ccccccchHHHHHcChhHHHHHHH
Confidence            65555444433 5565421    000000                           000012346677777744433333


Q ss_pred             HHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-------------------
Q psy16653        176 SLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-------------------  219 (301)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-------------------  219 (301)
                      .++....     ......+.|.+.++.|.+.+.....                 +.||.+.                   
T Consensus       214 ~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~  288 (382)
T PRK11128        214 VSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG  288 (382)
T ss_pred             HHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence            2322222     3345556666777766653221111                 2222111                   


Q ss_pred             -----------------------------ccccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q psy16653        220 -----------------------------MFDCIPFQVKGIATGIAVAV-NWIGAFLVTLCFGFLVRHFGSAATFWIFTV  269 (301)
Q Consensus       220 -----------------------------~~e~~p~~~R~~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~  269 (301)
                                                   ..+. |++.+++..+..+.. ..++..++|.+.|.+.|+.|. ..++..++
T Consensus       289 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~  366 (382)
T PRK11128        289 STTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMAL  366 (382)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHH
Confidence                                         4454 555568888887644 456668999999999999887 45666666


Q ss_pred             HHHHHH
Q psy16653        270 CCVVGT  275 (301)
Q Consensus       270 ~~~~~~  275 (301)
                      +.+++.
T Consensus       367 ~~~~~~  372 (382)
T PRK11128        367 VALPAL  372 (382)
T ss_pred             HHHHHH
Confidence            555444

>PTZ00207 hypothetical protein; Provisional

Probab=99.26  E-value=2.1e-11  Score=111.22  Aligned_cols=125  Identities=10%  Similarity=-0.034  Sum_probs=100.3

Q ss_pred             cccccccccCccccchhhhhcc------CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKE------TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI   76 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~   76 (301)
                      ||+++.++..++++|.++++++      ++++.+.+.|++.|+|.+...+.....+.+|+| ++||++.++...+..+|.
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGs  168 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGS  168 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHH
Confidence            5778889999999999999887      688999999999999999999999999999996 789999999999999999


Q ss_pred             HH-HHHhccc---hhHHHHHHHHHHHHHHHHHHhccc--ccchhHHHhcCChHHHHHH
Q psy16653         77 LY-LYCLGLS---TYTVIAIGCLAVPILLLVLFFLVV--PETPIYLMKSGNNKKAEVS  128 (301)
Q Consensus        77 ~~-~~~i~~~---~Wr~~f~~~~~~~~~~~~~~~~~~--~Esp~~l~~~~~~~~a~~~  128 (301)
                      .+ +++....   +|+..|++.+++++++.++..+++  |++|+|..++++.+++++.
T Consensus       169 aI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        169 AILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence            75 4444333   899999999999888777766555  4455655455544444444

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.22  E-value=7.5e-11  Score=105.11  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=53.9

Q ss_pred             ccccCCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGI-AVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      ..|.+|++.|++..+. .+....+++.+++.+.+++.+..|++.+|.+.+++.++..++.+...++
T Consensus       340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5688899999988766 5677889999999999999999999999998888887777666665554

>KOG3764|consensus

Probab=99.22  E-value=1.6e-12  Score=109.80  Aligned_cols=106  Identities=11%  Similarity=-0.091  Sum_probs=97.3

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCC-ccchhcHHHHHHHHHHHHHHHh
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY-LSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~-Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +..+.+|+.+...++++.++..+++.++++|.+||+|.+...+...+++++.+|++. |++++|..-.+.++|.++++.+
T Consensus       136 ~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf  215 (464)
T KOG3764|consen  136 KIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF  215 (464)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc
Confidence            456778888999999999999999999999999999999999999999999998776 7999999999999999999999


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhccc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVV  109 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~  109 (301)
                      |+.     |.+.+|++.+.+.++-..+.++.+
T Consensus       216 GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  216 GGILYEFAGKSAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             ccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence            987     999999999999999888887333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.20  E-value=2.4e-10  Score=103.29  Aligned_cols=101  Identities=10%  Similarity=-0.166  Sum_probs=86.1

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCC---ccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY---LSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+.+.++..+.+++.++.+.+++++.+.++|++.|+|.|...+....+++|++|+++   |++..+++..+.++|..+++
T Consensus        79 ~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        79 KKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence            556777888888999998888888888899999999999999999999999998865   88899999999999999998


Q ss_pred             Hhccc-----hhHHHHHHHHHHHHHHHHH
Q psy16653         81 CLGLS-----TYTVIAIGCLAVPILLLVL  104 (301)
Q Consensus        81 ~i~~~-----~Wr~~f~~~~~~~~~~~~~  104 (301)
                      .++..     +||+.|.+.++..++..+.
T Consensus       159 ~l~g~l~~~~g~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       159 LLAGVIAENYGYHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            88765     8999999988655544333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.19  E-value=5.2e-11  Score=105.32  Aligned_cols=218  Identities=10%  Similarity=0.031  Sum_probs=128.2

Q ss_pred             EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHH
Q psy16653         29 SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS----TYTVIAIGCLAVPILLLVL  104 (301)
Q Consensus        29 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~----~Wr~~f~~~~~~~~~~~~~  104 (301)
                      .+++.|++.|++.+...+....++.|..+  ++++..+......++|..+++.++..    +||..|++.++.+++..++
T Consensus       101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~  178 (396)
T TIGR00882       101 GAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLL  178 (396)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHH
Confidence            34566888888888888888888877643  33445555555566666666666543    9999999999888887766


Q ss_pred             HhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHh
Q psy16653        105 FFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQ  184 (301)
Q Consensus       105 ~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
                      .++..||+|..       ++..+    ..+.+               +++++..+.++.+++|..+......+.....  
T Consensus       179 ~~~~~~~~~~~-------~~~~~----~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~--  230 (396)
T TIGR00882       179 LMFAKPKAPSS-------ATVAN----ALGAN---------------ASAFSLKLALELFRQRKFWMFVLYVVGVACV--  230 (396)
T ss_pred             HHHhCCCCchh-------hhhhc----ccccc---------------cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH--
Confidence            65345555421       00000    00000               0001112345666666433322222111111  


Q ss_pred             hhchHHHHHhHHHHHHhcCC--CCCcchhh-------------------Hhhhccc------------------------
Q psy16653        185 FSGVNAVIFYSNDIFKSAGS--TLDPGFSY-------------------IQDSLIS------------------------  219 (301)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~g~--~~~~~~~~-------------------l~~~v~~------------------------  219 (301)
                         ++....+.+.++++...  +.+.....                   +.||.++                        
T Consensus       231 ---~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~  307 (396)
T TIGR00882       231 ---YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTA  307 (396)
T ss_pred             ---HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCCh
Confidence               22333344444444311  11111100                   3333222                        


Q ss_pred             ------------------------ccccCCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q psy16653        220 ------------------------MFDCIPFQVKGIATGI-AVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVG  274 (301)
Q Consensus       220 ------------------------~~e~~p~~~R~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~  274 (301)
                                              ..+..|++.++++.+. .+....+++.+++.+.+++.+..|++.+|.+.+++.++.
T Consensus       308 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~  387 (396)
T TIGR00882       308 LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF  387 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence                                    4667788888887776 567899999999999999999999988888888887776


Q ss_pred             HHHhh
Q psy16653        275 TVFTF  279 (301)
Q Consensus       275 ~~~~~  279 (301)
                      .....
T Consensus       388 ~~~~~  392 (396)
T TIGR00882       388 TLISV  392 (396)
T ss_pred             HHHHH
Confidence            65543

>KOG2615|consensus

Probab=99.16  E-value=5.6e-11  Score=100.06  Aligned_cols=77  Identities=9%  Similarity=-0.007  Sum_probs=66.7

Q ss_pred             ccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653          8 QLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS   85 (301)
Q Consensus         8 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~   85 (301)
                      .+|+...++..++-+++.+|..++.+|++.|+..| ...+..++++|+.++|+|++.++.+++.+.+|.++||.+|++
T Consensus       102 l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  102 LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence            34444556778888999999777778999999995 777889999999999999999999999999999999999876

>KOG2504|consensus

Probab=99.15  E-value=2e-12  Score=116.65  Aligned_cols=268  Identities=14%  Similarity=0.068  Sum_probs=174.6

Q ss_pred             ccccccccCccccchhhhhccCCeeEEee-echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIV-TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      |+...+|.++.++|.++..++++++.+++ .-++.|+|.|..+..+.+.+..++ +++|+.+.++...+..+|.++-+.+
T Consensus       111 R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l  189 (509)
T KOG2504|consen  111 RTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL  189 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH
Confidence            45567788888999999999999988666 678999999999999999999665 5678999999999999988887777


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHH-----------Hhc-CCCCChHH----
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLR-----------FYR-GSRYDVPL----  141 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~-----------~~~-~~~~~~~~----  141 (301)
                      ...     |||+.+++.+.+.+-..+....+-|.++.....   .++..+...           +.. ..+....+    
T Consensus       190 ~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (509)
T KOG2504|consen  190 LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLS  266 (509)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCccccc
Confidence            654     999999999999987777766344544432111   000000000           000 00000000    


Q ss_pred             HHHHHHHHHHHHh--hccchh----hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh---
Q psy16653        142 ELAAIQREIDAAA--RKKASF----SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY---  212 (301)
Q Consensus       142 ~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~---  212 (301)
                      +.+..++..++.+  ..+...    .++++++     ..+.+.+.......+++....++|.+.++.|++.+.....   
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Si  341 (509)
T KOG2504|consen  267 NLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSI  341 (509)
T ss_pred             chhhhhhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH
Confidence            0000000000000  111111    3566664     2333333344444457788888888888877764333222   


Q ss_pred             --------------Hhhhcc--c------------------------------------------------ccccCCcch
Q psy16653        213 --------------IQDSLI--S------------------------------------------------MFDCIPFQV  228 (301)
Q Consensus       213 --------------l~~~v~--~------------------------------------------------~~e~~p~~~  228 (301)
                                    +.|+-.  +                                                +.|+.+.+.
T Consensus       342 igi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~  421 (509)
T KOG2504|consen  342 IGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK  421 (509)
T ss_pred             HHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence                          111100  0                                                889999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhhe
Q psy16653        229 KGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       229 R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      -+.+.|+...+..++..++|.+.+.+.|..+ |...|...+++.+++..+.++
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999999999999999998887 667777777777777755544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.13  E-value=8.7e-10  Score=97.29  Aligned_cols=203  Identities=14%  Similarity=0.041  Sum_probs=121.5

Q ss_pred             hhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccc
Q psy16653         36 QNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVP  110 (301)
Q Consensus        36 l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~  110 (301)
                      +.++..+...+..-.+..|..++++++...+....+..+|.+++......     |||..|++.++..++..+..++..|
T Consensus       106 ~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       106 CASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33344444555566678888888888888888888888888888754332     9999999999988877766652333


Q ss_pred             cchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHH
Q psy16653        111 ETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNA  190 (301)
Q Consensus       111 Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  190 (301)
                      |+|..   +++.++                               +..++++.+++|..+..... .++...    +...
T Consensus       186 ~~~~~---~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~~~-~~l~~~----~~~~  226 (390)
T TIGR02718       186 RAVAS---PEAPLA-------------------------------RRASLFRFFRRPLAWSLLAL-ALLSAM----TAVS  226 (390)
T ss_pred             CCcCc---cccchh-------------------------------hHHHHHHHHcCcCHHHHHHH-HHHHHH----HHHH
Confidence            33210   000000                               01123445555532222221 111111    1222


Q ss_pred             HHHhHHHHHHhcCCCCCcchhh------------------Hhhhccc---------------------------------
Q psy16653        191 VIFYSNDIFKSAGSTLDPGFSY------------------IQDSLIS---------------------------------  219 (301)
Q Consensus       191 ~~~~~~~~~~~~g~~~~~~~~~------------------l~~~v~~---------------------------------  219 (301)
                      ...+.+.++++.|++.+.....                  +.||.+.                                 
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            3334455555555442221110                  1111110                                 


Q ss_pred             ---------------------ccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHH
Q psy16653        220 ---------------------MFDCIPF-QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVF  277 (301)
Q Consensus       220 ---------------------~~e~~p~-~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  277 (301)
                                           ..+..++ +.+++..++.+....++..++|.+.+.+.++.|++..|.+.+++.+++.++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence                                 3444554 889999999999999999999999999999999888887777766666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.11  E-value=1.3e-11  Score=112.19  Aligned_cols=120  Identities=10%  Similarity=-0.081  Sum_probs=89.4

Q ss_pred             cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHHhccc-----hhHHHHHHHHHH
Q psy16653         24 ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYCLGLS-----TYTVIAIGCLAV   97 (301)
Q Consensus        24 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~   97 (301)
                      +++...++++|++.|++.+........++.|.+|++.||+..++ ++.+...|.+...+++..     +|+..+++..++
T Consensus       339 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~  418 (490)
T PRK10642        339 SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVV  418 (490)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            44455567788888887777777788899999999999998886 666655554444444332     588888888888


Q ss_pred             HHHHHHHHhcccccchhHHHhc-----CChHHHHHHHHHhcCCCCChHHHHHHHH
Q psy16653         98 PILLLVLFFLVVPETPIYLMKS-----GNNKKAEVSLRFYRGSRYDVPLELAAIQ  147 (301)
Q Consensus        98 ~~~~~~~~~~~~~Esp~~l~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~  147 (301)
                      +++.++..+ ++||||+|+.++     ||.|||.+.++|++.   +.+.|.++++
T Consensus       419 ~~i~~~~~~-~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~---~~~~~~~~i~  469 (490)
T PRK10642        419 AVIGLITGV-TMKETANRPLKGATPAASDIQEAKEILVEHYD---NIEQKIDDID  469 (490)
T ss_pred             HHHHHHHHH-HhccccCCCCCCccccccchhhHHHHhhcccc---cccchhhhcc
Confidence            887777776 789999998865     999999999999984   3344444443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.09  E-value=4.9e-10  Score=95.63  Aligned_cols=91  Identities=14%  Similarity=-0.009  Sum_probs=74.5

Q ss_pred             hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc----------------
Q psy16653         22 FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS----------------   85 (301)
Q Consensus        22 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~----------------   85 (301)
                      +...+|..++++-++.|.|.+..-+.+..|+++..|++++.+.+++.+.+..+|.+++|.++..                
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            3456788899999999999999999999999999999999999999999999999999988652                


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHh-cccccc
Q psy16653         86 -----TYTVIAIGCLAVPILLLVLFF-LVVPET  112 (301)
Q Consensus        86 -----~Wr~~f~~~~~~~~~~~~~~~-~~~~Es  112 (301)
                           +||+++++.+...+++.+++. ..+||.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~  117 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL  117 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence                 599999977666555554443 234553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.09  E-value=5.3e-10  Score=93.87  Aligned_cols=234  Identities=17%  Similarity=0.100  Sum_probs=161.5

Q ss_pred             ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653          6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS   85 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~   85 (301)
                      ....++.+.++|.++-... +...++.+-.+.|.|.+...+..+..|-|.+|++- +..++++.+....|..++..+...
T Consensus        79 ~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavp  156 (395)
T COG2807          79 SLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVP  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhH
Confidence            3455666667777777666 66778889999999999999999999999998876 899999999988888888777644


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccch
Q psy16653         86 ------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKAS  159 (301)
Q Consensus        86 ------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (301)
                            +||....+-++++++.++.++   |...|.     +   .                         .+.+.+..+
T Consensus       157 la~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~r~-----~---~-------------------------~~~~~~~~~  200 (395)
T COG2807         157 LAQHSGGWRGALGFWALLALLALLIWL---PQALRE-----Q---A-------------------------ASIATKLVS  200 (395)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHh---hhcccc-----c---c-------------------------ccccccccc
Confidence                  799999999999999988866   322211     0   0                         000111223


Q ss_pred             hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc---
Q psy16653        160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS---  219 (301)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~---  219 (301)
                      -..++++|.-|.-.     +++..|-..+|.+..|+|.++.+.|++....-..                 +.+|..+   
T Consensus       201 ~~~vw~~~~aW~vt-----LfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~  275 (395)
T COG2807         201 VRKVWRSPLAWQVT-----LFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP  275 (395)
T ss_pred             ccccccCchhHHHH-----HHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            34567777333322     2233333348999999999999999885444321                 1111000   


Q ss_pred             ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF  253 (301)
Q Consensus       220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~  253 (301)
                                                                    ....-.++.-+.=.|+.+.++++.+..+|.++|+
T Consensus       276 ~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         276 LVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence                                                          2222233445666889999999999999999999


Q ss_pred             HHHhhC-cchhHHHHHHHHHHHHHHhheec
Q psy16653        254 LVRHFG-SAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       254 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      +.|..| |+.+...+..+.++..+..+..-
T Consensus       356 lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         356 LHDATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            999876 66666666666666666665543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.07  E-value=3.9e-10  Score=102.16  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             ccccccccCccccchhhhhccCCeeEE-eeechhhhccCcccccchhhhhhccCCCC--CccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSI-IVTPAQNMASDERDNITLNMLQKEGDAPT--YLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+...++..++++++++++++.+...+ .++|.++|+|.|...|....++.|.+|++  +|++..+++..+.++|..+++
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence            567788899999999999998775554 47899999999999999999999999988  457788899999999999888


Q ss_pred             Hhccc-----hhHHHHHHHHHHHH
Q psy16653         81 CLGLS-----TYTVIAIGCLAVPI   99 (301)
Q Consensus        81 ~i~~~-----~Wr~~f~~~~~~~~   99 (301)
                      .++.+     |||+.|++.++..+
T Consensus       161 ~l~g~l~~~~gw~~~F~i~~i~~~  184 (489)
T PRK10207        161 SLAPVIADKFGYSVTYNLCGAGLI  184 (489)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHH
Confidence            87765     99999999755333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.94  E-value=8.4e-10  Score=100.40  Aligned_cols=99  Identities=9%  Similarity=-0.004  Sum_probs=79.0

Q ss_pred             ccccccccCccccchhhhhccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCC--ccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY--LSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+...++..+++++.++.+++. +...+.++|++.|++.|...+....++.|++|+++  |+...+++..+.++|..+++
T Consensus        88 r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp  167 (500)
T PRK09584         88 KRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM  167 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence            4566778888888888888764 34456678999999999999999999999998754  44577888899999999998


Q ss_pred             Hhccc-----hhHHHHHHHHHHHHHHH
Q psy16653         81 CLGLS-----TYTVIAIGCLAVPILLL  102 (301)
Q Consensus        81 ~i~~~-----~Wr~~f~~~~~~~~~~~  102 (301)
                      .++++     |||+.|++.++..++.+
T Consensus       168 ~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        168 LATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            88765     89999999876544433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.93  E-value=9e-09  Score=90.69  Aligned_cols=245  Identities=14%  Similarity=0.051  Sum_probs=143.2

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH--
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC--   81 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~--   81 (301)
                      ++++.++..+.++..+......+++.++..-++..+...+..|..-.+..+....  ++.-.+-.-...++|.+++..  
T Consensus        68 ~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~  145 (400)
T PF03825_consen   68 KRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAF  145 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHH
Confidence            4555566666666666677788888877777777777777778887777777762  333444444444455444421  


Q ss_pred             ---hccc----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHh
Q psy16653         82 ---LGLS----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAA  154 (301)
Q Consensus        82 ---i~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
                         +...    +..+.+++.+..+++...... .+|+.|..    ++.++.                          .++
T Consensus       146 ~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~----~~~~~~--------------------------~~~  194 (400)
T PF03825_consen  146 GGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPK----RSAKES--------------------------VKK  194 (400)
T ss_pred             HHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccc----cccCCC--------------------------ccc
Confidence               1211    233456666666665555555 78887621    000000                          000


Q ss_pred             hccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcC-CCCCcchh--h-------------------
Q psy16653        155 RKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAG-STLDPGFS--Y-------------------  212 (301)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~--~-------------------  212 (301)
                      ....+..+++++|.....++..+.+...     ......|.+.++++.| .+.+....  .                   
T Consensus       195 ~~~~~~~~llk~~~~~~Fll~~~l~~~~-----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r  269 (400)
T PF03825_consen  195 LLGLDALKLLKNPRFLVFLLAAFLIGIS-----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR  269 (400)
T ss_pred             ccchHHHHHhcCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0112335678887544333333322222     4556777788888876 44222111  1                   


Q ss_pred             ----------------------Hh-hh---------cc---c--------------ccccCCcchhhhHHHHHHHH-HHH
Q psy16653        213 ----------------------IQ-DS---------LI---S--------------MFDCIPFQVKGIATGIAVAV-NWI  242 (301)
Q Consensus       213 ----------------------l~-~~---------v~---~--------------~~e~~p~~~R~~~~~~~~~~-~~~  242 (301)
                                            .. |.         ++   .              +.+..|++.|+++.++.+.. .-+
T Consensus       270 ~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Gl  349 (400)
T PF03825_consen  270 FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGL  349 (400)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhH
Confidence                                  00 11         00   0              88999999999999998876 568


Q ss_pred             HHHHHHHHHHHHHHhhCcchh------HHHHHHHHHHHHHHhheecccCC
Q psy16653        243 GAFLVTLCFGFLVRHFGSAAT------FWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       243 ~~~i~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      |..++..+.|++.|++|.+..      +.+.+++.++..++.+++.||++
T Consensus       350 g~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  350 GGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            999999999999999886643      34444555555555555555543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.91  E-value=7.1e-09  Score=94.21  Aligned_cols=226  Identities=13%  Similarity=0.056  Sum_probs=141.7

Q ss_pred             CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Q psy16653         25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPI   99 (301)
Q Consensus        25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~   99 (301)
                      .+.+.+++.-++.|++.+...|.-.+++.|..|+++...+.++.+...++..++|+.+++.     |=.+.|.+.++.-+
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl  180 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL  180 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788899999999999999999999999999999999999999999998888888875     66778877766555


Q ss_pred             HHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHH
Q psy16653        100 LLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGL  179 (301)
Q Consensus       100 ~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
                      +..+... .++..+.    +.+ .              ..+.-..++          +..++-+.++|..+. .+....+
T Consensus       181 ~~i~~l~-~~~~~~~----~~~-~--------------~~e~~~~~l----------~~G~ryv~~~~~l~~-~l~~~~~  229 (524)
T PF05977_consen  181 ISILALL-RWKPPPP----PSS-L--------------PRERFFSAL----------REGLRYVRSSPPLRS-VLLRSFL  229 (524)
T ss_pred             HHHHHHH-Hcccccc----ccc-c--------------chhhhhhhH----------HHHHHHHhcchHHHH-HHHHHHH
Confidence            4443333 3332110    000 0              000000011          112333444453322 2221211


Q ss_pred             HHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-------------------Hhhhccc---------------------
Q psy16653        180 MVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-------------------IQDSLIS---------------------  219 (301)
Q Consensus       180 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------------------l~~~v~~---------------------  219 (301)
                      ..+   . ...+...+|.+.++. ++.+....+                   +.++++.                     
T Consensus       230 ~~l---~-~~a~~aLlPl~a~~~-l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  230 FNL---F-ASAVWALLPLFARDV-LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHH---h-hhHHHHhhhHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            111   1 123334467766653 222222211                   0011000                     


Q ss_pred             ---------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q psy16653        220 ---------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV  272 (301)
Q Consensus       220 ---------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~  272 (301)
                                                 ..+..|++.||+..++...+...+..+|..+.|.+.+.+|.+..+.+.++..+
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~ll  384 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALL  384 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence                                       77889999999999999999999999999999999999998877776666555


Q ss_pred             HHHHHhh-eecccCC
Q psy16653        273 VGTVFTF-MVVPETK  286 (301)
Q Consensus       273 ~~~~~~~-~~~~et~  286 (301)
                      ++.++.+ ..+++.+
T Consensus       385 l~~~~~~~~~l~~~~  399 (524)
T PF05977_consen  385 LSALIALRFPLRQGE  399 (524)
T ss_pred             HHHHHHHHhcCcccc
Confidence            5555443 3344433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.90  E-value=1.7e-08  Score=90.84  Aligned_cols=251  Identities=16%  Similarity=0.176  Sum_probs=151.4

Q ss_pred             ccccccCccccchhhhhc-cCCeeEEee-echhhhccCcccccchhhhhhccCCCCCc----------------------
Q psy16653          6 LNQLALPDGGVGYEINFK-ETRTVSIIV-TPAQNMASDERDNITLNMLQKEGDAPTYL----------------------   61 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~-~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~R----------------------   61 (301)
                      ++.+...++.+++....+ .++.+.+.. .-++.-++.+...+...+|+.|.++++++                      
T Consensus       103 ~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (477)
T PF11700_consen  103 FLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVD  182 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHH
Confidence            334444444445555444 344343222 22333355666777778899999999999                      


Q ss_pred             ----cchhcHHHHHHHHHHHHHHHhccc-------------hhHHHHHHHHHHHHHHHHHHhcccccchhH-HHhcCChH
Q psy16653         62 ----SALGSFFQMFLTLGILYLYCLGLS-------------TYTVIAIGCLAVPILLLVLFFLVVPETPIY-LMKSGNNK  123 (301)
Q Consensus        62 ----g~~~~~~~~~~~~G~~~~~~i~~~-------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~-l~~~~~~~  123 (301)
                          ++..+.-.....+|.++..++...             +-|..+.+.++.-++..+-.++++||.|+- -..+++ .
T Consensus       183 ~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~  261 (477)
T PF11700_consen  183 SLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-S  261 (477)
T ss_pred             HhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-h
Confidence                999998888888888877666432             248888888888887777766688988742 000000 0


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-c
Q psy16653        124 KAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-A  202 (301)
Q Consensus       124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~  202 (301)
                      -              ...-..+          -..+++++.+.|+ ...+++   .+++.+ .|++.+......+.++ .
T Consensus       262 ~--------------~~~g~~~----------l~~t~k~~~~~~~-~~~fLi---a~~l~~-dg~~ti~~~~~i~a~~~l  312 (477)
T PF11700_consen  262 Y--------------LRFGFKR----------LWRTFKEIRKLRQ-LFLFLI---AYFLYS-DGVNTIISFAGIYATEVL  312 (477)
T ss_pred             H--------------HHHHHHH----------HHHHHHHHHhChH-HHHHHH---HHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            0              0000001          1112333333331 112222   222211 2455666666665553 3


Q ss_pred             CCCCCcchhh-----------------Hhhhccc----------------------------------------------
Q psy16653        203 GSTLDPGFSY-----------------IQDSLIS----------------------------------------------  219 (301)
Q Consensus       203 g~~~~~~~~~-----------------l~~~v~~----------------------------------------------  219 (301)
                      |++..+....                 +.||++.                                              
T Consensus       313 g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~  392 (477)
T PF11700_consen  313 GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGL  392 (477)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHH
Confidence            5553332211                 2222211                                              


Q ss_pred             ------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 ------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                                  .+|+.|++..+...|+....++..++++|.+++.+.+..| .+..+....++.+++.++.+. .++.|
T Consensus       393 ~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~-v~~~~  471 (477)
T PF11700_consen  393 FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF-VDVEK  471 (477)
T ss_pred             HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh-ccchh
Confidence                        9999999999999999999999999999999999999887 667777777777777777755 44444


Q ss_pred             C
Q psy16653        287 G  287 (301)
Q Consensus       287 ~  287 (301)
                      +
T Consensus       472 g  472 (477)
T PF11700_consen  472 G  472 (477)
T ss_pred             h
Confidence            3

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.87  E-value=1.5e-08  Score=92.29  Aligned_cols=101  Identities=11%  Similarity=-0.020  Sum_probs=76.4

Q ss_pred             cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH----HHHHHH
Q psy16653          5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL----GILYLY   80 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~----G~~~~~   80 (301)
                      .+..++..+..+|+++++.+++..+++.+-.+.|+|.|.... ....++|..|.++|+....+.......    |..++.
T Consensus       109 ~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~  187 (599)
T PF06609_consen  109 YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ  187 (599)
T ss_pred             HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence            345566777889999999999999999999999999877764 456699999999998877665544433    333333


Q ss_pred             Hhccc-hhHHHHHHHHHHHHHHHHHHh
Q psy16653         81 CLGLS-TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        81 ~i~~~-~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      .+... +|||.|++..+...+.+++..
T Consensus       188 ~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  188 LFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            33333 999999999988777655544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.83  E-value=2.1e-08  Score=89.76  Aligned_cols=74  Identities=12%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             cCcccccchhhhhhccCCCCCc--cchhcHHHHHHHHHHHHHHHhccc--------------------hhHHHHHHHHHH
Q psy16653         40 SDERDNITLNMLQKEGDAPTYL--SALGSFFQMFLTLGILYLYCLGLS--------------------TYTVIAIGCLAV   97 (301)
Q Consensus        40 ~~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~~~~i~~~--------------------~Wr~~f~~~~~~   97 (301)
                      +.....+...++++|..|+++|  +.+.++.+.+.++|.++++.+++.                    +-|..|++.++.
T Consensus       127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~  206 (477)
T TIGR01301       127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL  206 (477)
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence            5556667788999999999876  578888989999999998887643                    347789998888


Q ss_pred             HHHHHHHHhcccccch
Q psy16653         98 PILLLVLFFLVVPETP  113 (301)
Q Consensus        98 ~~~~~~~~~~~~~Esp  113 (301)
                      .++..++..+.++|.|
T Consensus       207 l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       207 LAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHeeeeeccC
Confidence            8888888877899976

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.77  E-value=1.1e-09  Score=81.56  Aligned_cols=109  Identities=12%  Similarity=0.002  Sum_probs=92.0

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+....+..+..++.++....++++.+.+.+++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  107 (141)
T TIGR00880        28 KPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG  107 (141)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhH
Confidence            44555566666777777778888888999999999999999999999999999999999999999999999999888877


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      ..     +||+.+++.++..++..+..++..||+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       108 GVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            65     899999999888888777766456664

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1.1e-08  Score=87.25  Aligned_cols=228  Identities=18%  Similarity=0.156  Sum_probs=150.5

Q ss_pred             ccccCccccchhhhh---ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653          8 QLALPDGGVGYEINF---KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         8 ~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      ..|+.++++|.++..   ...++..++.+-++.|.|.|.--+.+..|++...|++.-.+.+++.|....+|.++++.++.
T Consensus        82 ~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738          82 VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            467778888888884   66778889999999999999999999999999999999899999999999999999988863


Q ss_pred             c------------------------hhHHHHHHHHHHHHHHHHHHhc-ccccchhHHHhcCChHHHHHHHHHhcCCCCCh
Q psy16653         85 S------------------------TYTVIAIGCLAVPILLLVLFFL-VVPETPIYLMKSGNNKKAEVSLRFYRGSRYDV  139 (301)
Q Consensus        85 ~------------------------~Wr~~f~~~~~~~~~~~~~~~~-~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~  139 (301)
                      .                        .||+++...+...+++.+.... ..||-+.                       +.
T Consensus       162 ~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------------~~  218 (422)
T COG0738         162 SLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------------AA  218 (422)
T ss_pred             HHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------------cc
Confidence            2                        4788888877777766665541 2233210                       00


Q ss_pred             HHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh------
Q psy16653        140 PLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY------  212 (301)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~------  212 (301)
                      ++          +.+++.....+++++| ..+...+..+++...+    ..+..|++.++.+ .|.+.+.....      
T Consensus       219 ~~----------~~~~~~~~~~~l~~~~-~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~  283 (422)
T COG0738         219 PS----------LGASGSAGLSSLFQNK-HLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWV  283 (422)
T ss_pred             cc----------ccccccchHHHHHhCh-HHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            00          0011111567788888 3444444444444433    3466778888877 45553332221      


Q ss_pred             -----------Hhhhccc-----------------------------------------------ccccCCcchhhhHHH
Q psy16653        213 -----------IQDSLIS-----------------------------------------------MFDCIPFQVKGIATG  234 (301)
Q Consensus       213 -----------l~~~v~~-----------------------------------------------~~e~~p~~~R~~~~~  234 (301)
                                 +..++..                                               ..+..|.+  ....|
T Consensus       284 ~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s  361 (422)
T COG0738         284 GFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGS  361 (422)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccc
Confidence                       1111111                                               44555533  22334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Q psy16653        235 IAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGT  275 (301)
Q Consensus       235 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  275 (301)
                      .......+|+.+.|.+.|++.|+.|....+......|.+-.
T Consensus       362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             eeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            44455667899999999999999998777665666665555

>PRK09669 putative symporter YagG; Provisional

Probab=98.73  E-value=2.8e-08  Score=89.35  Aligned_cols=106  Identities=14%  Similarity=0.029  Sum_probs=67.5

Q ss_pred             cccccCccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHH
Q psy16653          7 NQLALPDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      +..+....+++.++....++.      ..+.+.-++.+.+.+.......++.+|+. ++++|++..++-.....+|..++
T Consensus        83 il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~  162 (444)
T PRK09669         83 LLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIV  162 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555432      23333444445444456666678999988 56889988888777777776665


Q ss_pred             HHhc--------c---c-hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         80 YCLG--------L---S-TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        80 ~~i~--------~---~-~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      ..+.        .   . +|+..+.+.++++++..+..++..+|.
T Consensus       163 ~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        163 SVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            4321        1   1 799999999888887776666466664

>KOG3626|consensus

Probab=98.69  E-value=1.4e-07  Score=86.97  Aligned_cols=192  Identities=12%  Similarity=0.067  Sum_probs=123.9

Q ss_pred             EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----------------------
Q psy16653         29 SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----------------------   85 (301)
Q Consensus        29 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----------------------   85 (301)
                      .++++-++.|+|....++.+..|+-|...+++-....++......+|.++|++++++                       
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI  318 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI  318 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence            456688999999999999999999999999999999999999999999999999742                       


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHhhccchhhh
Q psy16653         86 -TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRY--DVPLELAAIQREIDAAARKKASFSD  162 (301)
Q Consensus        86 -~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  162 (301)
                       -|+.-|++.+.+.++..+-.+ ++|....-   ..+..++ +..+..+.++.  +.+.+..+      +-+.-...+++
T Consensus       319 GAWWlGFLi~g~~~~~~a~p~f-~fPk~lp~---~~~~~~~-~~~~~~k~~~~~~~~~~~~~~------~ikdfp~s~~~  387 (735)
T KOG3626|consen  319 GAWWLGFLICGALLLFSAVPLF-FFPKELPK---SQKRKRA-RDLHVLKTESGGAKSDKTFGK------KIKDFPKSIKR  387 (735)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hCcccCcc---ccccchh-hhhcccccccccccCCcchhh------hHHHHHHHHHH
Confidence             499999999999999888887 77654311   1110011 11111111110  01101000      01112345677


Q ss_pred             hhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHH
Q psy16653        163 LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNW  241 (301)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~  241 (301)
                      ++++|.     .+...+....+...+..+..|+|.+++.. |.+  .                     +.|.=+.-.++-
T Consensus       388 ll~N~i-----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~s--a---------------------s~An~l~G~i~v  439 (735)
T KOG3626|consen  388 LLSNPI-----FMLVVLASVIESLAITGYITFLPKYLETQFGIS--A---------------------SLANILTGSIGV  439 (735)
T ss_pred             HhcCch-----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCC--H---------------------HHHHHHhhhhhh
Confidence            888873     33333333444455788999999999986 444  1                     223333334444


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q psy16653        242 IGAFLVTLCFGFLVRHFG  259 (301)
Q Consensus       242 ~~~~i~~~~~~~l~~~~~  259 (301)
                      -+..+|.++.|++.+.+.
T Consensus       440 p~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  440 PAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             hhhhhhhhccceeeeeec
Confidence            556677777777777654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.59  E-value=9.1e-09  Score=93.84  Aligned_cols=85  Identities=11%  Similarity=-0.004  Sum_probs=3.0

Q ss_pred             eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---------------------
Q psy16653         27 TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS---------------------   85 (301)
Q Consensus        27 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~---------------------   85 (301)
                      +..++++.++.|+|....++++..|+-|..++++-+.+.++......+|+.+|+++++.                     
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~  220 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS  220 (539)
T ss_dssp             -----------SSS------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence            56788899999999999999999999999999999999999999999999999999742                     


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         86 ------TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        86 ------~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                            .|..-|++.+...++..+-.. .+|..
T Consensus       221 dp~WvGAWWLGfli~g~~~~l~aipl~-~FPk~  252 (539)
T PF03137_consen  221 DPRWVGAWWLGFLICGILLFLSAIPLF-FFPKK  252 (539)
T ss_dssp             ---------------------------------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHH-cCCcc
Confidence                  388888888888887776666 55543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.54  E-value=3.5e-07  Score=82.67  Aligned_cols=80  Identities=16%  Similarity=-0.002  Sum_probs=59.2

Q ss_pred             eechhhhccCcccccchhhhhhccCCCCCccchhcHHHH---HHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHH
Q psy16653         32 VTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQM---FLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLV  103 (301)
Q Consensus        32 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~---~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~  103 (301)
                      +..++.+++.+..-+..-++..|..+ +++....+....   ...+|.+++..+++.     +||..|++.+.+.++..+
T Consensus       125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            37889999998999999999999999 555444333322   234677777666554     899999999988888865


Q ss_pred             HHhcccccch
Q psy16653        104 LFFLVVPETP  113 (301)
Q Consensus       104 ~~~~~~~Esp  113 (301)
                      ... +++|++
T Consensus       204 ~~~-~~~E~~  212 (468)
T TIGR00788       204 VSN-LSKERR  212 (468)
T ss_pred             HHH-hccccc
Confidence            555 788864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.53  E-value=1.6e-06  Score=75.83  Aligned_cols=68  Identities=13%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             ccccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIA-VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      .++.+|++..+|...+. +....++..+.+.+.|.+.|++|++.+|++.+.+.++..++..+.+++.++
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            89999999999999986 467788899999999999999999999999998888877777777765544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686|consensus

Probab=98.48  E-value=3.5e-07  Score=74.72  Aligned_cols=236  Identities=14%  Similarity=0.066  Sum_probs=132.3

Q ss_pred             cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc--hhHHHHHHH---HHHH
Q psy16653         24 ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--TYTVIAIGC---LAVP   98 (301)
Q Consensus        24 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--~Wr~~f~~~---~~~~   98 (301)
                      ...||.++.+||+.|+|.-..-+....|+.-|+..|+-+.+.++.....-+|..+-..+-.+  +--.-++-.   ..++
T Consensus       133 ~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG  212 (459)
T KOG4686|consen  133 SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLG  212 (459)
T ss_pred             HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHH
Confidence            46789999999999999877788888999999999999999999988888887665544332  111111100   1111


Q ss_pred             HHHHHHHhcccccchhHHHhcCC-hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhc-cchhHHHHHHH
Q psy16653         99 ILLLVLFFLVVPETPIYLMKSGN-NKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS-SRANLRALIIS  176 (301)
Q Consensus        99 ~~~~~~~~~~~~Esp~~l~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  176 (301)
                      +...+-.. ....|-......|- ++.|++.+.+-.+.-.+                  .....+... .|.+| ...+.
T Consensus       213 ~~l~~~~~-tc~~slical~lg~~D~rAerilh~e~g~~Ge------------------~pkLtdv~~f~ppfw-~~~ii  272 (459)
T KOG4686|consen  213 LWLCFEVK-TCKQSLICALSLGLSDDRAERILHLEEGFLGE------------------EPKLTDVNTFYPPFW-VLVII  272 (459)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHhhhcCcccC------------------CcccccccccCccHH-HHHHH
Confidence            11111111 11111111222222 23333333222211111                  111112211 12133 22222


Q ss_pred             HHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc-------------------
Q psy16653        177 LGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS-------------------  219 (301)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~-------------------  219 (301)
                      +.+....    ...+....|.++++ .|++...+...                 +.|+.+.                   
T Consensus       273 cv~yyva----~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l  348 (459)
T KOG4686|consen  273 CVLYYVA----WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL  348 (459)
T ss_pred             HHHHHHH----HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH
Confidence            3332221    33444556666665 46653322111                 4454333                   


Q ss_pred             ----------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cc---hhHHHH
Q psy16653        220 ----------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SA---ATFWIF  267 (301)
Q Consensus       220 ----------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~---~~~~~~  267 (301)
                                                  ++-++|.+.-||+.|+++.+.+++-.+.|.+.+.+.++-| +.   ..|+..
T Consensus       349 ~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  349 FFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence                                        7889999999999999999999999999999999988765 22   234455


Q ss_pred             HHHHHHHHHHhheecc
Q psy16653        268 TVCCVVGTVFTFMVVP  283 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~  283 (301)
                      +..++....+.+.+.+
T Consensus       429 ~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  429 GLMALTSVGILFYLNK  444 (459)
T ss_pred             HHHHHHHHHHHhheec
Confidence            6666666666655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.42  E-value=2.7e-08  Score=93.77  Aligned_cols=109  Identities=10%  Similarity=-0.101  Sum_probs=92.9

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      |+++.+++.+.+++.++.+++++...+++.+++.|+..++..++..++++|++|.++|++.+++.+....+|.++++.++
T Consensus       625 r~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~  704 (742)
T TIGR01299       625 LRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF  704 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777788888888888888788888889999888889999999999999999999999999999999999999887


Q ss_pred             cc----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 LS----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..    +...+|++.++..++..++.+ ++||+.
T Consensus       705 g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~  737 (742)
T TIGR01299       705 GSFVGITKAAPILFASAALACGGLLAL-KLPDTR  737 (742)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence            64    556788888888887777777 779974

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.36  E-value=8.2e-07  Score=80.50  Aligned_cols=107  Identities=14%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             cccccCccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHH
Q psy16653          7 NQLALPDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      +.++....+++.++....++.      ..+++.-++.+++.....+...+++.|.+ ++++|.+..++-..+.++|..+.
T Consensus        80 il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429         80 ILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             HhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555444443322      22334444555666666677778999999 69999998888666555553333


Q ss_pred             HHh--------ccc----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         80 YCL--------GLS----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        80 ~~i--------~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..+        +..    +|+....+.++..++..+..++..+|.+
T Consensus       160 ~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~  205 (473)
T PRK10429        160 AGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY  205 (473)
T ss_pred             HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC
Confidence            221        211    6888888888887776666664677753

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.35  E-value=3.8e-06  Score=75.18  Aligned_cols=105  Identities=19%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             cccccCccccchhhhhcc-C-------CeeEEeeechhhhccCcccccchhhhhhccCC-CCCccchhcHHHHHHHHHHH
Q psy16653          7 NQLALPDGGVGYEINFKE-T-------RTVSIIVTPAQNMASDERDNITLNMLQKEGDA-PTYLSALGSFFQMFLTLGIL   77 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~-~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~   77 (301)
                      +.+|....+++.++.... +       ....+.+.-++..++.........++..|.++ +++|.+..+.-+.+..+|.+
T Consensus        75 ~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~  154 (428)
T PF13347_consen   75 ILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSL  154 (428)
T ss_pred             eehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHH
Confidence            345556666666666655 4       11224555566677777788888899999998 67999999998888888886


Q ss_pred             HHHHhccc------------hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         78 YLYCLGLS------------TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        78 ~~~~i~~~------------~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                      +...+...            +|++...+.+++.++..++..+.++|
T Consensus       155 l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  155 LASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            54444321            59999999999999988888877888

>PRK11462 putative transporter; Provisional

Probab=98.24  E-value=5.6e-06  Score=74.77  Aligned_cols=102  Identities=16%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             CccccchhhhhccCC------eeEEeeechhhhccCcccccchhhhhhccCC-CCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653         12 PDGGVGYEINFKETR------TVSIIVTPAQNMASDERDNITLNMLQKEGDA-PTYLSALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus        12 ~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      ...+++.++....++      +..+.+.-++..++.......-.++..|.++ +++|.+..++-..+..+|..+++.+..
T Consensus        88 i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462         88 LPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555544443      1223333344455556666677788999987 999999999999888888766644421


Q ss_pred             -----c-------hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         85 -----S-------TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        85 -----~-------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                           .       +|+....+.+++++++.++.++..+|.+
T Consensus       168 plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~  208 (460)
T PRK11462        168 PLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERV  208 (460)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceecc
Confidence                 1       6898888888888777766654566643

>KOG2325|consensus

Probab=98.21  E-value=5.9e-07  Score=79.64  Aligned_cols=108  Identities=12%  Similarity=-0.011  Sum_probs=79.3

Q ss_pred             cccccCccccchhhh-h---ccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH
Q psy16653          7 NQLALPDGGVGYEIN-F---KET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC   81 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~-~---~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~   81 (301)
                      +.+|..+..+|+++- +   ... .-+.++++|++.|+|.| ...+.-.|+++-+..+.|-|+.+....+..+|.++|+.
T Consensus       105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            345555666676665 2   222 56679999999999985 67778899999999999999999988877777777777


Q ss_pred             hccc-------h-----------hHHHHHHHHHHHHHHHHHHhcccccchhH
Q psy16653         82 LGLS-------T-----------YTVIAIGCLAVPILLLVLFFLVVPETPIY  115 (301)
Q Consensus        82 i~~~-------~-----------Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~  115 (301)
                      ++..       |           +..+-++..+..++..+...+++.|.++-
T Consensus       184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            6522       1           33456677777777776666688887753

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.18  E-value=1.2e-05  Score=70.55  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=59.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGK  288 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  288 (301)
                      ..|.+|++.|+++.++.+....++..+++.+.+.+.++.+|+..+.+.+++.++..+..++..||++++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            789999999999999999999999999999999999989999988888888777777766667776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.16  E-value=1.6e-05  Score=69.00  Aligned_cols=64  Identities=20%  Similarity=0.243  Sum_probs=62.0

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP  283 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      ++++.|+++|+++.++.+....+...++..+..++.+.+|||.+|...+.+.+++.+..+..+|
T Consensus       126 a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         126 AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999998899

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.15  E-value=9.6e-06  Score=71.60  Aligned_cols=68  Identities=10%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|+++.++.+....++..++|.+.+.+.+..+|+..+.+.++++++..++.+...||+++
T Consensus       116 i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            78999999999999999999999999999998888888899988888888887777776666777643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.14  E-value=1.6e-05  Score=70.76  Aligned_cols=68  Identities=13%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR------HFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|+++.++.+....++..+++.+.+++.+      ..||+..|.+.++..++..++.+++.||+++
T Consensus       121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            7899999999999999999999999999999888764      3589999999888877777677777788764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.12  E-value=2.5e-07  Score=82.47  Aligned_cols=110  Identities=13%  Similarity=0.068  Sum_probs=85.3

Q ss_pred             ccccccccCccccchhhhhcc-C---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHH-HHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKE-T---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQ-MFLTLGILY   78 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~-~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~   78 (301)
                      |+++.++..+.+++..+.... .   +++.+++.+++.|++.+...+....++.|++|+++||+..++.+ ....+|.++
T Consensus       281 r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       281 KKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            345556666666654444442 2   23456678999999998888999999999999999999999997 567888888


Q ss_pred             HHHhccc-----------hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         79 LYCLGLS-----------TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        79 ~~~i~~~-----------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ++.+++.           |||..|.+.++..++..++..++++|+-
T Consensus       361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            8877653           4999999999999888888887888873

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.10  E-value=1.9e-05  Score=70.85  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ..|.+|++.|+++.++.+....+++.+++.+.+.+.+..||+..|.+.++++++..++..+..||+
T Consensus       136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            789999999999999999999999999999999999999999999888877665555444445543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.09  E-value=5.3e-07  Score=79.80  Aligned_cols=107  Identities=14%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      ++++..+..+.+++.++....++.+.+++..++.|++.+..++.....+.|..|+++||+..++++....+|..+++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~  358 (399)
T PRK05122        279 LRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA  358 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666667667677777777788899999999988888888889999999999999999998888887766554


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                      +.     ||+..|++.++..++.++..+ .+++
T Consensus       359 g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~  390 (399)
T PRK05122        359 GLVASWFGYPSIFLAAALAALLGLALTW-LLYR  390 (399)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence            43     899999999888888777766 4444

>PRK09848 glucuronide transporter; Provisional

Probab=98.08  E-value=5.7e-05  Score=68.01  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=29.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy16653        227 QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGS  260 (301)
Q Consensus       227 ~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~  260 (301)
                      +.+|...|+.+....++..+++.+.+.+.+..|+
T Consensus       358 r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        358 RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4569999999999999999999999988877664

>TIGR00895 2A0115 benzoate transport

Probab=98.07  E-value=1.4e-05  Score=70.18  Aligned_cols=67  Identities=21%  Similarity=0.341  Sum_probs=57.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ..|.+|++.|+++.++......++..+++.+.+.+.+..+|+..+.+.+++..+..++.+...||+.
T Consensus       130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            7899999999999999999999999999999999999999998888887666666666666677653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.06  E-value=5.1e-06  Score=74.30  Aligned_cols=86  Identities=17%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             CeeEEeeechhhhccCcccccchhhhhhccC--CCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHH
Q psy16653         26 RTVSIIVTPAQNMASDERDNITLNMLQKEGD--APTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVP   98 (301)
Q Consensus        26 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~--~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~   98 (301)
                      +.....+.-++..+|....-.++-+++.|..  .|+.||...+.......+|.+++..+++.     ++|..|.+.+.+.
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~  164 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALP  164 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHH
Confidence            3444445556777777778888888999988  34447888888888889999998888765     8899999998888


Q ss_pred             HHHHHHHhccccc
Q psy16653         99 ILLLVLFFLVVPE  111 (301)
Q Consensus        99 ~~~~~~~~~~~~E  111 (301)
                      .+..+...+..+|
T Consensus       165 ~l~~~~~~~~~~e  177 (433)
T PF03092_consen  165 LLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHhhhh
Confidence            8777766645555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.03  E-value=7.5e-07  Score=79.45  Aligned_cols=111  Identities=10%  Similarity=-0.062  Sum_probs=87.2

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYC   81 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~   81 (301)
                      +++++.++..+.+++.++..++++.+.++..+++.|++.+...+....++.|..|++.|+...+. ++....+|.++++.
T Consensus       291 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~  370 (420)
T PRK09528        291 AKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST  370 (420)
T ss_pred             cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence            45566666777777777788888888888899999998887778888899999999999987665 67777788888777


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +.+.     |||..|.+.++..++..++.++.++|.|
T Consensus       371 ~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        371 LAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            7655     8999999988888776666553555443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.03  E-value=4.6e-05  Score=67.27  Aligned_cols=66  Identities=12%  Similarity=0.063  Sum_probs=57.7

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ..|.+|++.|+.+.|+......++..++|.+.+.+.++.||+..|.+.++++++..+..+...||.
T Consensus       122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            788999999999999999999999999999999999999999999998888877766666556654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.02  E-value=1.3e-05  Score=72.68  Aligned_cols=68  Identities=18%  Similarity=0.253  Sum_probs=58.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|+.+.++......++..++|.+.+++.++.+|+..|++.+.+.++..++..+..||+++
T Consensus       115 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            78999999999999999999999999999999999999999999988887777777666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2563|consensus

Probab=98.01  E-value=1.9e-05  Score=68.84  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=128.6

Q ss_pred             eechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----------hhHH--HHHHHHHHH
Q psy16653         32 VTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----------TYTV--IAIGCLAVP   98 (301)
Q Consensus        32 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----------~Wr~--~f~~~~~~~   98 (301)
                      .+-.+.+.+.-.....-+-..+-|+|++||..+..+-.++..+|..++.++...           .|..  .|+..+.++
T Consensus       145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~  224 (480)
T KOG2563|consen  145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLA  224 (480)
T ss_pred             HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHH
Confidence            444455544433333444566779999999999998888888888888777543           6776  466555555


Q ss_pred             HHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHH
Q psy16653         99 ILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLG  178 (301)
Q Consensus        99 ~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
                      .+.+++..+..+|.|+.-     ...+++..                      ++..-..+++++++++.    +++.. 
T Consensus       225 ~l~l~l~~~~~~~~P~tP-----ps~s~~~~----------------------~~~~f~~si~~~~~n~~----F~il~-  272 (480)
T KOG2563|consen  225 ALLLALVLFVFTKKPPTP-----PSASQAAL----------------------QDASFPKSIKSCFKNRQ----FIILA-  272 (480)
T ss_pred             HHHHHHHHHhcCCCCCCC-----CchhHhhh----------------------hcCcHHHHHHHHHcCcc----HHHHH-
Confidence            555555554555544210     00000000                      00111235677787763    22222 


Q ss_pred             HHHHHhhhchHHHHHhHHHHHHhcCCCC--Ccchhh---------------Hhhhccc----------------------
Q psy16653        179 LMVFQQFSGVNAVIFYSNDIFKSAGSTL--DPGFSY---------------IQDSLIS----------------------  219 (301)
Q Consensus       179 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~--~~~~~~---------------l~~~v~~----------------------  219 (301)
                      +.+...+..++...+.+...+...|++.  ......               +.||...                      
T Consensus       273 ~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~  352 (480)
T KOG2563|consen  273 ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC  352 (480)
T ss_pred             HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222233334555555554444445552  111110               2233111                      


Q ss_pred             -------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC----cchhH
Q psy16653        220 -------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG----SAATF  264 (301)
Q Consensus       220 -------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~----~~~~~  264 (301)
                                                     ..|..-+..-++..|+.+..+.+.+++-.++.+...+..+    +...-
T Consensus       353 t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~  432 (480)
T KOG2563|consen  353 TLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPAN  432 (480)
T ss_pred             hccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccch
Confidence                                           4444433444889999999999999999999988888776    43344


Q ss_pred             HHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653        265 WIFTVCCVVGTVFTFMVVPETKGKTLAQ  292 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~et~~~~~~~  292 (301)
                      +.....+.++.++..++.|+-++.+.|+
T Consensus       433 i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  433 IFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             hHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence            5556666677777777666655555543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.01  E-value=7.6e-05  Score=66.28  Aligned_cols=102  Identities=23%  Similarity=0.157  Sum_probs=74.7

Q ss_pred             CccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHHHHhc-
Q psy16653         12 PDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYLYCLG-   83 (301)
Q Consensus        12 ~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~~~i~-   83 (301)
                      .-+++...++..++++      ....+.-++.+++.......-.++..|+. .++||.+..++-+.+.++|.++...+- 
T Consensus        91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~  170 (467)
T COG2211          91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP  170 (467)
T ss_pred             HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666642      23444556677777777777788888987 489999999999999999977665442 


Q ss_pred             ----c------c-hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 ----L------S-TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ----~------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                          .      . ||+..-.+.++.+++..+.+++-++|.+
T Consensus       171 plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         171 PLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                1      1 8999999999999998888886677754

>PRK12382 putative transporter; Provisional

Probab=98.00  E-value=1.3e-06  Score=77.22  Aligned_cols=103  Identities=11%  Similarity=-0.023  Sum_probs=85.8

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      ++...++..+.+++.++....++.+.+++..++.|++.+...+.....+.|..|+++||+..++++....+|..+++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        279 VKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             CeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666777777777778777788899999999888888888999999999999999999999999988888776


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      +.     ||+..|.+.++..++..++.+
T Consensus       359 g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        359 GMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            55     899999999988887776655

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.96  E-value=8.3e-05  Score=65.81  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ++|.+|++.|+.+.++......++..++|.+.+.+.+..||+..|.+.+.+++++.+......||++
T Consensus       133 i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        133 TMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            7899999999999999999999999999999999999999999998887777666555554467654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.95  E-value=3.3e-05  Score=68.47  Aligned_cols=67  Identities=12%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      +.|.+|++.|+++.++.+....++..+++.+.+.+.+..+|+..+.+.+++.++..++.....||++
T Consensus       128 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            7899999999999999999999999999988888888888988888877766666655555567653

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.95  E-value=3.8e-05  Score=67.21  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|+.+.++.+....++..+++.+.+.+.+..+|+..+.+.+++.++..+..++..||+++
T Consensus       107 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       107 VASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            78999999999999999999999999999999999999999999988888877777776666666543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.93  E-value=9.5e-05  Score=67.18  Aligned_cols=65  Identities=14%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR---------HFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      ++|.+|++.|+.+.|+.+..+++++.+++.+.+.+..         ..||+.+|.+.+++.++..+..+++.++
T Consensus       148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            6788999999999999998888888888777665532         1479999999888887777666654443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.93  E-value=9.3e-05  Score=64.16  Aligned_cols=244  Identities=12%  Similarity=0.099  Sum_probs=136.4

Q ss_pred             ccchhhhhccCC--eeE-EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc------c-
Q psy16653         15 GVGYEINFKETR--TVS-IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG------L-   84 (301)
Q Consensus        15 ~i~~~~~~~~~~--~~~-l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~------~-   84 (301)
                      .++.+...++++  ++. .+..-.+..++.....+...+++.+..++++-|+..++--....+|.++..++.      . 
T Consensus       100 i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~  179 (438)
T COG2270         100 IISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQ  179 (438)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhccc
Confidence            344444444444  333 444555778888888888999999999999999988876655555555554442      1 


Q ss_pred             ---------------c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHH
Q psy16653         85 ---------------S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQR  148 (301)
Q Consensus        85 ---------------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  148 (301)
                                     . .=|..+.+.++--++..+=.++.+||.++--   .....             ...+.+.+   
T Consensus       180 ~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~---~~~~~-------------~l~~g~k~---  240 (438)
T COG2270         180 QTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS---SPPPT-------------ALRNGFKE---  240 (438)
T ss_pred             ccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc---ccchH-------------HHHHHHHH---
Confidence                           0 3566666666555544433333566654300   00000             00111111   


Q ss_pred             HHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHH-hcCCCCCcchhh---------------
Q psy16653        149 EIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFK-SAGSTLDPGFSY---------------  212 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~---------------  212 (301)
                             -..+++++.+++ ....+++   ..++++ -|.+.+......+-. +.|.+..+....               
T Consensus       241 -------L~~t~k~i~~~~-~i~~FLi---A~~~~~-DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~  308 (438)
T COG2270         241 -------LKSTFKEIRGRK-NLVLFLI---ARFFYI-DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIA  308 (438)
T ss_pred             -------HHHHHHHHhccc-chHHHHH---HHHHHH-hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence                   122344444443 2222222   222222 245666666666555 344442221111               


Q ss_pred             --Hhhhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHH
Q psy16653        213 --IQDSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI  242 (301)
Q Consensus       213 --l~~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~  242 (301)
                        +.+|++.                                                .++++|+++-+...|+++..++.
T Consensus       309 g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra  388 (438)
T COG2270         309 GFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA  388 (438)
T ss_pred             HHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH
Confidence              2222221                                                89999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        243 GAFLVTLCFGFLVRHFGS-AATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       243 ~~~i~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      .++.+|++.+.+.+..|. +..+.....+..++.++... .|+.++++.
T Consensus       389 ~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~-v~~~~~~~~  436 (438)
T COG2270         389 ASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR-VKVPGRREA  436 (438)
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe-ecCCCCccc
Confidence            999999999999887764 33344444555555544444 555554443

>PRK10054 putative transporter; Provisional

Probab=97.92  E-value=6.6e-05  Score=66.47  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      .+|.+|++.|+++.|+.+...+++..++|.+.+.+.+ .+|+.+|.+.+++++++.++..+..|++
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        121 FADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999998774 6898888888877777766655555554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.92  E-value=4.1e-05  Score=67.07  Aligned_cols=67  Identities=7%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      .+|.+|++.|+++.++.+....+|..+++.+.+++.++.|||..|.+.+++.++..++.++..||++
T Consensus       103 ~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       103 AASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            6788999999999999999999999999999999999999999999988888887777777788754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.92  E-value=1.6e-06  Score=78.31  Aligned_cols=90  Identities=9%  Similarity=-0.091  Sum_probs=77.0

Q ss_pred             cccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc------hh
Q psy16653         14 GGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS------TY   87 (301)
Q Consensus        14 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~------~W   87 (301)
                      .+++.++....++++.+++.+++.|++.|...+....++.|..|+++||+..++++....+|.++++.+++.      +|
T Consensus       320 ~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  399 (455)
T TIGR00892       320 NGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY  399 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence            344445556677888888899999999999999999999999999999999999999999999999988765      59


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy16653         88 TVIAIGCLAVPILLLV  103 (301)
Q Consensus        88 r~~f~~~~~~~~~~~~  103 (301)
                      +..|++.++..++..+
T Consensus       400 ~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       400 KYIFYASGSIVVSAGL  415 (455)
T ss_pred             chHHHHhhHHHHHHHH
Confidence            9999999887766554

>PRK10504 putative transporter; Provisional

Probab=97.91  E-value=8.5e-05  Score=67.31  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=56.7

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ..|.+|++.|+++.++......++..++|.+.+.+.++.+|+..|.+...++.++.+......|+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        123 VMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            679999999999999999999999999999999999999999998887777777766666555554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.88  E-value=2.7e-06  Score=75.38  Aligned_cols=103  Identities=12%  Similarity=-0.047  Sum_probs=84.1

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      +++..++..+.+++.+.....++.+.+.+.+++.|++.|...+....++.|..|+++||+..++++....+|..+++.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~  367 (408)
T PRK09874        288 EKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG  367 (408)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence            34445555555555555566677777888999999999999999999999999999999999999988888888888887


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      +.     +|+..|++.++..++..+..+
T Consensus       368 G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        368 AAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            64     899999999998888777665

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.86  E-value=8.5e-05  Score=67.83  Aligned_cols=67  Identities=25%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ..+.+ |++.|+++.|+......++..++|.+.+.+.++.+|++.|++...++++..++.+++.|+.+
T Consensus       119 l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        119 IRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            33554 77999999999999999999999999999999999999999888777777777766677654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.85  E-value=2.7e-06  Score=73.32  Aligned_cols=101  Identities=17%  Similarity=0.047  Sum_probs=89.7

Q ss_pred             ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653          6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS   85 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~   85 (301)
                      .+.++..+..++.++....++.+.+.+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.
T Consensus       244 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~  323 (352)
T cd06174         244 LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL  323 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777788888888888888888999999999999999999999999999999999999999999999998888654


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         86 -----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        86 -----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                           +|+..+.+.+++.++..+..+
T Consensus       324 l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         324 LLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhcccCcchHHHHHHHHHHHHHHHhe
Confidence                 899999999999988877765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.81  E-value=0.00065  Score=58.89  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      .+|.+|++.|+.+.++.+....++..++|.+.+.+.+..+|+..+.+.++..+++.+..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       117 LPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            6677888999999999999999999999999999999999998888777766665554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.80  E-value=2.9e-05  Score=67.23  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF--GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ++.-+|++.||+..++=++..++|+.+.|.+.  +++..+.+|+..|++=++++++..++.++..++|.
T Consensus       142 i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             HHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            88999999999999999999999999999988  88888889999999999999888888887776544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.80  E-value=0.00025  Score=62.53  Aligned_cols=66  Identities=18%  Similarity=0.370  Sum_probs=51.5

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG--SAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ..|.+|++.|+.+.++.+....++..+++.+.+.+.+..+  |+..+.+.++..++.. +.....||++
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~  192 (405)
T TIGR00891       125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE  192 (405)
T ss_pred             HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence            7899999999999999999999999999999998888766  8877766554444443 3344467654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.75  E-value=0.00024  Score=63.33  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=59.0

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|+++.++.+....++..++|.+.+.+.++.||+..|++.++..+++.+..++..||+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        129 VQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            77899999999999999999999999999999988888899999999888888777666666788653

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.74  E-value=6.2e-06  Score=72.93  Aligned_cols=89  Identities=8%  Similarity=-0.054  Sum_probs=72.0

Q ss_pred             hhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHH
Q psy16653         21 NFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCL   95 (301)
Q Consensus        21 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~   95 (301)
                      ....++.+.+++.+++.+++.|...+....+..|..|+ +||+..++++....+|..+++.+++.     +|+..|++.+
T Consensus       299 ~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~  377 (393)
T PRK15011        299 MLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL  377 (393)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34456666777788888888777777778889999885 59999999988888888888888765     8999999988


Q ss_pred             HHHHHHHHHHhccccc
Q psy16653         96 AVPILLLVLFFLVVPE  111 (301)
Q Consensus        96 ~~~~~~~~~~~~~~~E  111 (301)
                      ++.++.+++.+ ++||
T Consensus       378 ~~~~~~~~~~~-~~~~  392 (393)
T PRK15011        378 VMIIATLFCLL-RIKD  392 (393)
T ss_pred             HHHHHHHHHHH-hhcC
Confidence            88888777776 6665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.72  E-value=0.00036  Score=61.63  Aligned_cols=68  Identities=19%  Similarity=0.082  Sum_probs=55.2

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|.+.|+.+.++.+....++..++|.+.+.+.+..||+..|.+.++..++..+...+..||+++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            56788888999999999999999999999999999888899988888877766665555555677543

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.72  E-value=0.00019  Score=64.01  Aligned_cols=49  Identities=18%  Similarity=0.263  Sum_probs=44.0

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFT  268 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~  268 (301)
                      ..|.+|++.|+++.++......++.++++.+.+.+.+..+|+.+|.+..
T Consensus       131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            7899999999999999999999999999999988888889998887644

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.72  E-value=0.00026  Score=64.06  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             ccccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHh
Q psy16653        220 MFDCIPFQ--VKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFT  278 (301)
Q Consensus       220 ~~e~~p~~--~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  278 (301)
                      .+|.+|++  .|+++.++.+...++|+.++|.+.+++.++.||+..|.+.++..+++.+..
T Consensus       125 v~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        125 LGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            78999986  799999999999999999999999999999999988887665555544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.71  E-value=0.00017  Score=64.77  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=53.7

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ..|.+|++.|+++.|+.+....+++.+++.+.+...+ +.+|+..|++.++++++..+..+++.||+
T Consensus       143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            6778999999999999999999999998887765544 46899999988888887766666666664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.68  E-value=0.00033  Score=62.16  Aligned_cols=68  Identities=16%  Similarity=0.160  Sum_probs=57.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|..+.++......++..++|.+.+.+.++.+|+..+.+.+++++++.+..+...||+++
T Consensus       126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            77889999999999999888888999999999999888899999988888888777766666777653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.67  E-value=0.00025  Score=62.48  Aligned_cols=68  Identities=16%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ..|.+|++.|+.+.+.......++..+++.+.+.+.+..+|+.+|.+.++..++..+..+...||.++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            67889999999999999999999999999999998888899999998888777776666666777543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.63  E-value=1.2e-05  Score=70.20  Aligned_cols=99  Identities=11%  Similarity=-0.049  Sum_probs=76.4

Q ss_pred             ccccccccCccccchhhhhccCCeeE--EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVS--IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC   81 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~   81 (301)
                      ++...++..+.+++.++..+.++...  ++...++.|++.|...+..+.++.|..|+++|++..++.+....+|..+++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~  349 (377)
T TIGR00890       270 QKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGL  349 (377)
T ss_pred             hhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            34455566666666666666554322  3345678888888888888999999999999999999999999999999988


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHH
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLL  102 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~  102 (301)
                      +.+.     ||++.|.+.+++.++.+
T Consensus       350 ~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       350 IASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            7654     89999999887776643

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.62  E-value=0.00013  Score=53.71  Aligned_cols=66  Identities=24%  Similarity=0.385  Sum_probs=57.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ..|.+|++.|+++.++.+....++..+++.+.+.+.+..+++..+.+.+...+++.+..++..||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            677888999999999999999999999999999999888888888888888888877777766654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.59  E-value=8e-06  Score=72.77  Aligned_cols=108  Identities=13%  Similarity=-0.055  Sum_probs=83.5

Q ss_pred             ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653          6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS   85 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~   85 (301)
                      .+.++..+.+++.++....++.+...+..++.|++.+...+....++.|..|+++||+..+++.....+|..+++.+.+.
T Consensus       291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence            34445555566666666677776667788888988887778888899999999999999999998888888888887765


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         86 -----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        86 -----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                           |++..++..+...+++.++..+.+||.+
T Consensus       371 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        371 LGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence                 7888888888777776666654667654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.59  E-value=0.0013  Score=57.52  Aligned_cols=67  Identities=24%  Similarity=0.441  Sum_probs=56.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ..|.+|++.|+++.++.+....++..++|.+.+.+.+..+|+..+.+.++++++..++..+..||++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            5667788899999999999999999999999999999889999988888888777766666667653

>PRK03699 putative transporter; Provisional

Probab=97.57  E-value=0.00056  Score=60.50  Aligned_cols=60  Identities=7%  Similarity=0.037  Sum_probs=48.9

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHHhh
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVFTF  279 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  279 (301)
                      +.|.+|++.|+.+.++.+....+++.++|.+.+.+.+ ..+|+.+|.+.+++.++..++.+
T Consensus       120 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        120 ITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            7799999999999999988888899999988887765 56899998888877766554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.57  E-value=0.00026  Score=61.14  Aligned_cols=65  Identities=29%  Similarity=0.446  Sum_probs=56.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      ..|.+|++.|+.+.++.+....++..+++.+.+.+.+..+|+..+++.++++++..++...+.++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen  110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             ccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            89999999999999999999999999999999999888899999999999988887764444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.56  E-value=3.6e-05  Score=69.84  Aligned_cols=109  Identities=10%  Similarity=-0.068  Sum_probs=69.8

Q ss_pred             cccccccCccccchhhhhcc--CCeeE--EeeechhhhccCcc-cccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          5 TLNQLALPDGGVGYEINFKE--TRTVS--IIVTPAQNMASDER-DNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~--~~~~~--l~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      +++..+..+.+++.++.+..  .+...  .+.+-++.+.+.+. ..|....++.|.+|+++|++..++.+....+|.+++
T Consensus       337 ~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~  416 (479)
T PRK10077        337 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV  416 (479)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555544322  11111  11223333333332 346778999999999999999999988887777766


Q ss_pred             H----Hhc-------cchhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         80 Y----CLG-------LSTYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        80 ~----~i~-------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +    .+.       ..+|++.|++.++..++..++.+++.||+.
T Consensus       417 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            3    333       127899999988888877777765778874

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.54  E-value=7.1e-05  Score=65.39  Aligned_cols=177  Identities=12%  Similarity=0.027  Sum_probs=103.5

Q ss_pred             hhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-------hhHHHH
Q psy16653         19 EINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-------TYTVIA   91 (301)
Q Consensus        19 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-------~Wr~~f   91 (301)
                      .+..+.++...+-+.-++.|++.+. -..-..|+--..|+++-.++.+........|..++.++|..       +.+.++
T Consensus        86 ~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~  164 (412)
T PF01770_consen   86 LLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN  164 (412)
T ss_pred             HHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            3344556777777778888887753 55667888888899999999999888888888888777754       677777


Q ss_pred             HHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHH--H--HHHhcCCCCChHHHHHHHHHHHHH----Hhhccchhhhh
Q psy16653         92 IGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEV--S--LRFYRGSRYDVPLELAAIQREIDA----AARKKASFSDL  163 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~--~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  163 (301)
                      ++......+.++..+ ++|-.++-+.-+++.++...  .  .++.++.+.+..++.+...+....    -+.-...+++.
T Consensus       165 ~isl~~~~~a~~~~~-fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  243 (412)
T PF01770_consen  165 YISLASVSLALLIAL-FLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSC  243 (412)
T ss_pred             HHHHHHHHHHHHHHH-HcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHH
Confidence            777666666666666 78887765443333221111  0  000000000000000000000000    00011223334


Q ss_pred             hccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc
Q psy16653        164 VSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA  202 (301)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  202 (301)
                      .++|     .++-..+|+....+|++-+.+|...+.++.
T Consensus       244 y~~~-----~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v  277 (412)
T PF01770_consen  244 YSNP-----RLLLWSLWWAFATCGYYQVINYVQSLWDTV  277 (412)
T ss_pred             hcCc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            4443     455566777777788888999998888887

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.54  E-value=0.00039  Score=62.74  Aligned_cols=67  Identities=12%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAF-LVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ..|.+|++.|+++.|+.+....+++. .++.+...+....+|+..|++.+++.++..++.+++.||+.
T Consensus       145 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        145 MVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            77889999999999999888888864 44543333333448888888888777776666666666643

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.51  E-value=0.00048  Score=62.81  Aligned_cols=50  Identities=22%  Similarity=0.391  Sum_probs=44.9

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTV  269 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~  269 (301)
                      ..|.+|++.|+.+.++......++..+++.+.+.+.++.+|+..|.+...
T Consensus       133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999887765433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.51  E-value=0.00093  Score=59.30  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ..|.+|++.|+++.|+......++..++|.+.+.+. ..+|+..|.+.++.+++..++.....||.
T Consensus       124 ~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        124 VIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            678999999999999999999999999999999988 67998888888877776665555555653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.50  E-value=0.0013  Score=59.14  Aligned_cols=79  Identities=16%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----Hh-------------hCcchhHHHHHHHHHHHHHHhhee
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV-----RH-------------FGSAATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  281 (301)
                      +++.+|++.||++.|+....+++|..+++++.+.+.     +.             .+++.+.+++..+.++..++.++.
T Consensus       152 vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        152 ISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999999999998888888887777776644     22             234555667777777777676666


Q ss_pred             cccCC--CCCHHHHHHHhc
Q psy16653        282 VPETK--GKTLAQIQRELG  298 (301)
Q Consensus       282 ~~et~--~~~~~~~~~~~~  298 (301)
                      .++.+  +.+.++..+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~vlk  250 (462)
T PRK15034        232 MNDIASSRASIADQLPVLQ  250 (462)
T ss_pred             CCCccccccCHHHHHHHhC
Confidence            65533  334555544443

>TIGR00898 2A0119 cation transport protein

Probab=97.49  E-value=1.9e-05  Score=72.20  Aligned_cols=107  Identities=10%  Similarity=-0.069  Sum_probs=81.7

Q ss_pred             ccccccCccccchhhhhccCCe--eEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          6 LNQLALPDGGVGYEINFKETRT--VSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      .+.++..+.+++.++..+.++.  +...+.-++.+++.+..++....+..|.+|++.|+...++.+....+|.++++.+.
T Consensus       387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~  466 (505)
T TIGR00898       387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV  466 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence            4445555556666666655544  33344455666777778888999999999999999999999999999999998876


Q ss_pred             cc---hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         84 LS---TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        84 ~~---~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..   ++...+.+.+...++..++.. ++||+.
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       467 YLGEKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            55   677888888888888877777 889874

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.44  E-value=0.00015  Score=63.12  Aligned_cols=67  Identities=9%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVT-LCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ..|.+|++.|+.+.++.+....++..+++ .+...+.+..+|+..+.+.+++.++..++.++..||++
T Consensus       108 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       108 VTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            78999999999999999999999999999 46666667778988888888777776666666666543

>PRK11043 putative transporter; Provisional

Probab=97.44  E-value=0.0017  Score=57.51  Aligned_cols=65  Identities=20%  Similarity=0.219  Sum_probs=54.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      ..|.+|++.|+...+..+....++..++|.+.+.+.++.+|+..+.+.+++.++..+..+...++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            67899999999999998888899999999999999999999988888887777766665554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.44  E-value=2e-05  Score=68.97  Aligned_cols=101  Identities=11%  Similarity=0.004  Sum_probs=76.1

Q ss_pred             cccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---
Q psy16653          9 LALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS---   85 (301)
Q Consensus         9 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~---   85 (301)
                      ++..+.++........++.+.+.+.+++.|++.|...+....++.|..|+ +|++..++++....+|..+++.+.+.   
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~  348 (375)
T TIGR00899       270 LAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE  348 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344456667777788899999888888888999999876 56799999998888898888877654   


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         86 --TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        86 --~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                        ||+..|++.++..++..++.. +++|
T Consensus       349 ~~g~~~~~~~~~~~~~~~~~~~~-~~~~  375 (375)
T TIGR00899       349 RWSYHAVYWFAIVMLIVALFCLL-LIKD  375 (375)
T ss_pred             hccchhHHHHHHHHHHHHHHHHh-eecC
Confidence              899999999988887777765 5554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.43  E-value=5.7e-05  Score=68.31  Aligned_cols=99  Identities=11%  Similarity=-0.166  Sum_probs=70.7

Q ss_pred             ccccccccCccccchhhhhccCC-eeEEeeechhhhccCcccccchhhhhhccCCCC--CccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETR-TVSIIVTPAQNMASDERDNITLNMLQKEGDAPT--YLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+...++..+.+++.++.+...+ ...+.++..+.++|.|...+....+++|.+|++  +|....++.....++|..+++
T Consensus        76 rr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap  155 (493)
T PRK15462         76 RMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAP  155 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHH
Confidence            34556677777777665554322 122333444555677777788889999999986  799999999999999999998


Q ss_pred             Hhccc-----hhHHHHHHHHHHHHHHH
Q psy16653         81 CLGLS-----TYTVIAIGCLAVPILLL  102 (301)
Q Consensus        81 ~i~~~-----~Wr~~f~~~~~~~~~~~  102 (301)
                      .+..+     |||+.|.+.++..++.+
T Consensus       156 ~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        156 IACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             HHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            88765     89999998766444333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.43  E-value=0.00065  Score=61.92  Aligned_cols=53  Identities=15%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             ccccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q psy16653        220 MFDCIPFQV--KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV  272 (301)
Q Consensus       220 ~~e~~p~~~--R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~  272 (301)
                      .+|.+|++.  |+.+.++.+...++|+.++|.+.|++.++.||+..|.+.++...
T Consensus       130 i~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~  184 (489)
T PRK10207        130 LSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI  184 (489)
T ss_pred             HHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            899998874  57889999999999999999999999999999988877554333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.41  E-value=0.00058  Score=62.89  Aligned_cols=66  Identities=21%  Similarity=0.371  Sum_probs=48.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhh-eecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTF-MVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~et  285 (301)
                      ++|+.|.+.|..+.++.....-....+++.+...+..+.+||+.|.+..+...++.+..+ ++.|++
T Consensus       155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~  221 (599)
T PF06609_consen  155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP  221 (599)
T ss_pred             HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            899999999998888777666555567777776666667899999888877766654433 344443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.38  E-value=2.6e-05  Score=70.73  Aligned_cols=99  Identities=10%  Similarity=-0.081  Sum_probs=81.7

Q ss_pred             ccccCccccchhhhhc---------cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653          8 QLALPDGGVGYEINFK---------ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY   78 (301)
Q Consensus         8 ~~~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~   78 (301)
                      .+|+.+.+++-+..+.         ..+++.++...++.|+|+....|....+++|.+|++.||++++++.....+|..+
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555442         4688889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         79 LYCLGLS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        79 ~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      +..+...     +|...|...++..++..++.+
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence            8777654     788888888888777766665

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.0012  Score=57.44  Aligned_cols=64  Identities=20%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC---cchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG---SAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      +++.||++++|++.|+.- .+|+|..+..++.|.+....+   |+.+..++....++..+..++...+
T Consensus       129 ~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         129 ASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             ccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999 999999999999999999999   8888888888888888777776654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.25  E-value=4.6e-05  Score=68.63  Aligned_cols=71  Identities=14%  Similarity=-0.078  Sum_probs=59.8

Q ss_pred             ccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         43 RDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        43 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +..+....++.|..|+++|++..++.+....+|.++++.+...     +|++.|++.++.+++.+++.+++.||++
T Consensus       399 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       399 GWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             cccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            3457777888999999999999999999999999988877554     8999999999998888877765678764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.20  E-value=0.0025  Score=55.46  Aligned_cols=65  Identities=14%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hCcchhH-HHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH----------FGSAATF-WIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~e  284 (301)
                      .+|.+|++.|+.+.++......++..+++.+.+.+.+.          .+|+..+ +..+++..+..++.+...+|
T Consensus       115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence            88999999999999999988888888888877766653          3688777 44455544444444444444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.16  E-value=5e-05  Score=69.39  Aligned_cols=101  Identities=5%  Similarity=-0.096  Sum_probs=76.8

Q ss_pred             ccccccCccccchhhhhccCC---------eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH
Q psy16653          6 LNQLALPDGGVGYEINFKETR---------TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI   76 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~---------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~   76 (301)
                      .+.+|+.+.+++-+..+.+.+         .+.++...++.|+|++...|+...++.+.+|++.||+.++.+.....+|.
T Consensus       352 ~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~  431 (500)
T PRK09584        352 KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA  431 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            455666777777666544433         34688899999999999999999999999999999999999998877887


Q ss_pred             HHHHHhcc-----c----------hhHHHHHHHHHHHHHHHHHHh
Q psy16653         77 LYLYCLGL-----S----------TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        77 ~~~~~i~~-----~----------~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      .++..+..     .          +.+..|...++.++++.++.+
T Consensus       432 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        432 LIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77655542     0          256777777777766555544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.11  E-value=0.011  Score=51.54  Aligned_cols=53  Identities=8%  Similarity=-0.085  Sum_probs=47.2

Q ss_pred             echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653         33 TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS   85 (301)
Q Consensus        33 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~   85 (301)
                      .-.+.|+|.+...+...++++|.+|+++|++..++...+..+|.+++.++.+.
T Consensus        95 ~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~  147 (403)
T PF03209_consen   95 AFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGR  147 (403)
T ss_pred             HHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44578888888889999999999999999999999999999999999888654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.11  E-value=0.0039  Score=56.97  Aligned_cols=66  Identities=17%  Similarity=0.313  Sum_probs=55.9

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      .+|.+|++.|+.+.++.....+++..+++.+..++.+ ..||+.+|.+.++..++..+..+. .||+.
T Consensus       132 ~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        132 KTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             HHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            7799999999999999999999999999999998888 469999999988877777655554 57653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.09  E-value=0.0036  Score=55.53  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-FGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ++|.+|++.|+.+.++......++..+++.+...+.+. .||+..|++.++..++..+.. +..||+
T Consensus       119 ~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~  184 (402)
T PRK11902        119 STDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEP  184 (402)
T ss_pred             HHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            79999999999999999999999999999988888875 489999988887776655543 345654

>TIGR00897 2A0118 polyol permease family

Probab=97.06  E-value=0.0024  Score=56.66  Aligned_cols=64  Identities=19%  Similarity=0.220  Sum_probs=44.9

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGA-FLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP  283 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      ..+.+|++.|+++.|+.+....++. ..++.+.+.+.+..|++..++.......++.++.+++.+
T Consensus       130 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       130 VVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            5678899999999999999999886 578888888888778655544444333333434444344

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.05  E-value=8.6e-05  Score=65.41  Aligned_cols=100  Identities=6%  Similarity=-0.109  Sum_probs=81.0

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHH-HHHHHHHHHHHHh
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQ-MFLTLGILYLYCL   82 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~~~~i   82 (301)
                      ++++.++..+.++.-+..+++++.+.++...+++|+..|...+....|+.+. |+++|++.+++++ ....+|..+++.+
T Consensus       270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~  348 (382)
T TIGR00902       270 RDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF  348 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777777888899999999999999999999999999999998 9999999999876 4677888888887


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHH
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLF  105 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~  105 (301)
                      ++.     ++ ..|++.++.+++.+++.
T Consensus       349 ~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       349 AGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            765     65 55677777776655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3764|consensus

Probab=97.01  E-value=0.00089  Score=57.78  Aligned_cols=70  Identities=20%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             ccccCCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCC
Q psy16653        220 MFDCIPFQV-KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKT  289 (301)
Q Consensus       220 ~~e~~p~~~-R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  289 (301)
                      +++.||.+. |+++.|+....-.+|..++|.+.+.+.+..|.+.+|+++++++++...+-++.++.++..+
T Consensus       184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            778888866 7999999999999999999999999999999999999999999999999888887766555

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.99  E-value=0.00097  Score=60.45  Aligned_cols=64  Identities=9%  Similarity=-0.009  Sum_probs=50.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---CcchhHHHHHHHHHHHHHHhheecc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF---GSAATFWIFTVCCVVGTVFTFMVVP  283 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      ++|.+|++.|+.+.|+......+|..+++.+..++.+..   +|+..|.+.+++.++..++.+++.+
T Consensus       147 i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~  213 (467)
T PRK09556        147 ITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGS  213 (467)
T ss_pred             HHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCC
Confidence            889999999999999999999999999988887776653   4777777777766665555555444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.97  E-value=0.00024  Score=71.60  Aligned_cols=108  Identities=14%  Similarity=0.037  Sum_probs=78.6

Q ss_pred             cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653          5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      ++..++..+.+++.++.....+.+.+++.-++.|++.|...+....++.|..|+++||+..++.++...+|.+++..++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        300 GLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666667777777888899999999999999999999999999999999999888888876665554


Q ss_pred             c------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         85 S------TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        85 ~------~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      .      +|...+++.+.+.++..++..+.+|++
T Consensus       380 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (1146)
T PRK08633        380 LFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS  413 (1146)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3      566667666665554444333244443

>PRK15075 citrate-proton symporter; Provisional

Probab=96.96  E-value=0.0084  Score=53.80  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=38.9

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHhhCcchhHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFL--------VRHFGSAATFWIFT  268 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l--------~~~~~~~~~~~~~~  268 (301)
                      .+|.+|++.|+.+.++.....+++..+++.+.+.+        .+.+||+.+|++..
T Consensus       142 ~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            88999999999999999988888777776665554        24678988887643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.96  E-value=0.029  Score=51.38  Aligned_cols=66  Identities=12%  Similarity=0.108  Sum_probs=48.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhCcchhHHHHHHHHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-----------------------HFGSAATFWIFTVCCVVGTV  276 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-----------------------~~~~~~~~~~~~~~~~~~~~  276 (301)
                      .+|.+|++.|+++.++.+....+|..+++.+...+..                       ..+||..+.+.++.+++..+
T Consensus       140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999888877665432                       13688888665555555444


Q ss_pred             HhheecccCC
Q psy16653        277 FTFMVVPETK  286 (301)
Q Consensus       277 ~~~~~~~et~  286 (301)
                      . .+.+||+.
T Consensus       220 ~-~~~lpESp  228 (502)
T TIGR00887       220 F-RLTIPETP  228 (502)
T ss_pred             H-HHhCCCCH
Confidence            4 45579863

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00901 2A0125 AmpG-related permease

Probab=96.96  E-value=0.0019  Score=56.13  Aligned_cols=67  Identities=13%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG--------SAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ++|.+|++.|+.+.++......+|..+++.+.+.+.++.+        |+.+|++.++..++..+..++..||.+
T Consensus       108 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       108 RLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            6788899999999999999999999999999998888888        999998888877776666555556653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.94  E-value=0.0013  Score=59.64  Aligned_cols=65  Identities=15%  Similarity=0.299  Sum_probs=56.5

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-FGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      .+|.+|++.|+++.++.+....++..+++.+.+.+.+. .+|+.+|.+.++..++..++.+...+|
T Consensus       156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            78999999999999999999999999999999999888 499999999888877776666655554

>KOG1330|consensus

Probab=96.94  E-value=0.0001  Score=64.56  Aligned_cols=132  Identities=16%  Similarity=0.112  Sum_probs=86.7

Q ss_pred             hhhhhhccchhHHHHH-HHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhhHhhhcccccccCCcchhhhHHHHH
Q psy16653        159 SFSDLVSSRANLRALI-ISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIA  236 (301)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~  236 (301)
                      ++...+.++.+|++.+ ++..+|....+..-..-.+|.-.+.+.. |++...... +...+  ++|.+|..+|++..++.
T Consensus        86 Pl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~-ia~s~--IaD~f~~~~Rs~~~~if  162 (493)
T KOG1330|consen   86 PLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSP-IAPSL--IADSFPDDKRSRVLGIF  162 (493)
T ss_pred             HHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcc-cchhH--hhhcCcchhhhHHHHHh
Confidence            3445555655565543 3444444443322223444455555554 444222111 11111  88999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCHHHH
Q psy16653        237 VAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQI  293 (301)
Q Consensus       237 ~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~  293 (301)
                      +.+..+|+.++-.....+.+..+ ||+.|..-+++.+++.++..++.+|..++..|+.
T Consensus       163 y~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~  220 (493)
T KOG1330|consen  163 YFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV  220 (493)
T ss_pred             hhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence            99999999888877777777655 9999999999999999999888888766544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.81  E-value=0.00025  Score=62.36  Aligned_cols=76  Identities=13%  Similarity=-0.015  Sum_probs=62.9

Q ss_pred             eeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHH
Q psy16653         31 IVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLF  105 (301)
Q Consensus        31 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~  105 (301)
                      ....++.|++.+...|....++.|..|+++++...+.++....+|..+++.+++.     +|++.|.+.+...++..+..
T Consensus       289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        289 APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            3466778887777889999999999999998888888888888999888888765     89999999888888776665


Q ss_pred             h
Q psy16653        106 F  106 (301)
Q Consensus       106 ~  106 (301)
                      +
T Consensus       369 ~  369 (381)
T PRK03633        369 L  369 (381)
T ss_pred             H
Confidence            5

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0054  Score=54.67  Aligned_cols=99  Identities=14%  Similarity=-0.037  Sum_probs=79.5

Q ss_pred             ccccCccccchhhhhcc--CCeeEEeeechhhhccCcccccchhhhhhccCCCCC--ccchhcHHHHHHHHHHHHHHHhc
Q psy16653          8 QLALPDGGVGYEINFKE--TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY--LSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         8 ~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      ..|..+.++|.++.+..  .+...+.++-.+.++|.|..=+....++.|..|++.  |-...+++..+.++|.++++++.
T Consensus        96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~  175 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT  175 (498)
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence            44556667787777777  477888899999999999999999999999998553  55666677888889999988887


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      .+     ||...|.+.++-..+.++..+
T Consensus       176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         176 GLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            65     999999988877776665554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.73  E-value=0.00042  Score=61.31  Aligned_cols=108  Identities=13%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             cccccccCccccchhhhhcc-CCeeEEee----echhhhccCcccccchhhhhhccCCCCCccchhcHHHH-HHHHHHHH
Q psy16653          5 TLNQLALPDGGVGYEINFKE-TRTVSIIV----TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQM-FLTLGILY   78 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~~G~~~   78 (301)
                      +++.++...+++=-.+.+.. ++.+....    .-.++|+..|...+.+..|+.|..|++.|++.++++.. ...+|..+
T Consensus       274 ~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i  353 (400)
T PF03825_consen  274 WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI  353 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence            44445554444444444454 33333332    23469999999999999999999999999999998775 46788888


Q ss_pred             HHHhccc-----------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         79 LYCLGLS-----------TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        79 ~~~i~~~-----------~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      +..++++           .|...+.+.+...++..++.+++.+|+
T Consensus       354 G~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  354 GSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            8888765           477788888888888877777566654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.67  E-value=0.00033  Score=64.09  Aligned_cols=102  Identities=15%  Similarity=-0.111  Sum_probs=82.3

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      .++...+...++++.+..+++++.+..++.-++.|++.....+...+.+-+..|++.|||..+++++....+..+|..+.
T Consensus       284 ~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  284 RRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             chhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677778888888899999998888999999998888888889999999999999999999888777777777665


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHH
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLF  105 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~  105 (301)
                      +.     |-+..+.+.++..++..++.
T Consensus       364 G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  364 GFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            54     77888877776555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.66  E-value=0.013  Score=51.80  Aligned_cols=56  Identities=20%  Similarity=0.076  Sum_probs=44.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-GSAATFWIFTVCCVVGTV  276 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~  276 (301)
                      ..|.+| +.|+.+.+........+..+++.+.+.+.++. +|+..+.++++..++...
T Consensus       122 ~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        122 IKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            677777 67999999999999999999999999888875 788877666655554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.65  E-value=0.034  Score=49.87  Aligned_cols=66  Identities=23%  Similarity=0.139  Sum_probs=46.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV--------RHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ++|.+|++.|+...++.......|..+++.+...+.        +..|||.+|.+.++..++... .....||++
T Consensus       149 i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~  222 (432)
T PRK10406        149 MSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETS  222 (432)
T ss_pred             HHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence            789999999999999887777777777666544433        257899999877766665543 333456654

>PRK09952 shikimate transporter; Provisional

Probab=96.65  E-value=0.00042  Score=62.24  Aligned_cols=82  Identities=10%  Similarity=0.005  Sum_probs=61.1

Q ss_pred             eeechhhhccCcccccchhhhhhccCCCCCccchhcHH-HHHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHH
Q psy16653         31 IVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFF-QMFLTLGILYLYCLGLS-------TYTVIAIGCLAVPILLL  102 (301)
Q Consensus        31 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~-~~~~~~G~~~~~~i~~~-------~Wr~~f~~~~~~~~~~~  102 (301)
                      ++..++.|++.+...+....++.|.+|+++|+...++. +.+..+|..+++.+...       +|+..+...++.+++.+
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~  426 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            34556667888877888899999999999999888874 44455676666655433       58998888888888777


Q ss_pred             HHHhcccccch
Q psy16653        103 VLFFLVVPETP  113 (301)
Q Consensus       103 ~~~~~~~~Esp  113 (301)
                      +..+ .++|+.
T Consensus       427 v~~~-~~~~~~  436 (438)
T PRK09952        427 MTAL-LMKDNQ  436 (438)
T ss_pred             HHHH-Hccccc
Confidence            7766 667754

>KOG2816|consensus

Probab=96.62  E-value=0.034  Score=50.13  Aligned_cols=72  Identities=15%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             cccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         42 ERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        42 g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +.......+|++|.+..++|....++....+..|..+++.++..     |--..|.+.....++..+...+.+|||-
T Consensus       127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            34666778899999999999999999999888888888888876     6666888888888888888887899984

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.62  E-value=0.035  Score=50.28  Aligned_cols=68  Identities=18%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             ccccCCcchh--hhHHHHHHHHHHHHHHHHHHHHHHHH--Hhh-------------CcchhHHHHHHHHHHHHHHhheec
Q psy16653        220 MFDCIPFQVK--GIATGIAVAVNWIGAFLVTLCFGFLV--RHF-------------GSAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       220 ~~e~~p~~~R--~~~~~~~~~~~~~~~~i~~~~~~~l~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      .+|+.|++.|  +.+.++.+....+|+++++.+.+...  +.+             +.+..|.+-+++.+++..+..+..
T Consensus       139 iaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v  218 (477)
T TIGR01301       139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV  218 (477)
T ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence            8999999876  57899999999999999988776542  221             345578887888888888888888


Q ss_pred             ccCCC
Q psy16653        283 PETKG  287 (301)
Q Consensus       283 ~et~~  287 (301)
                      ||...
T Consensus       219 ~E~~~  223 (477)
T TIGR01301       219 KENPL  223 (477)
T ss_pred             eccCC
Confidence            88653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.61  E-value=0.016  Score=51.36  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      +.|.+|++.|+++.|+......++..++|.+.+.+.+.. +...+.+.+.+.+++. +....+||.+
T Consensus       113 i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        113 LTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            789999999999999999999999999999999988753 5455555444444443 3334566543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.60  E-value=0.017  Score=50.90  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=50.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      ..|..+.+.++...+.......+|..+++...+++.+++||+.+|.+.+++.++..+..+...|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       122 AAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45666777677777777777788888998888889999999999999988887766666554444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.56  E-value=0.074  Score=48.05  Aligned_cols=37  Identities=3%  Similarity=-0.088  Sum_probs=33.0

Q ss_pred             chhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653         47 TLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus        47 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      +-..+..|.++.++-.|..+++..+.++|.++++.+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~  185 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI  185 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999988664

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2615|consensus

Probab=96.54  E-value=0.0059  Score=52.61  Aligned_cols=124  Identities=13%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc--CCCCCcchhhHhhhcccccccCCcchhhhHHHHH
Q psy16653        159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA--GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIA  236 (301)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~  236 (301)
                      +.+..+.++.-||+.+..+.+.......-...-.+|.-..+...  |.. ...... +..+  ++|+++++.|+.+++..
T Consensus        86 ~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~-kgnl~v-~rAi--isdV~sek~r~l~ms~v  161 (451)
T KOG2615|consen   86 PLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF-KGNLSV-IRAI--ISDVVSEKYRPLGMSLV  161 (451)
T ss_pred             hhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCchHH-HHHH--HHhhcChhhccceeeee
Confidence            34555666656777777666655543332233333333333222  322 111111 1111  89999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---hhCcchhHH---HHHHHHHHHHHHhheecccCC
Q psy16653        237 VAVNWIGAFLVTLCFGFLVR---HFGSAATFW---IFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       237 ~~~~~~~~~i~~~~~~~l~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~et~  286 (301)
                      .....+|.++||++.+++..   ..|....+.   +..+++........+++|||-
T Consensus       162 ~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  162 GTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             ehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999887   344322111   112222222344456689874

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.53  E-value=0.0008  Score=59.51  Aligned_cols=104  Identities=9%  Similarity=-0.054  Sum_probs=79.6

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYC   81 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~   81 (301)
                      +++++.++..+++++..+...+++.+.++..++++|++.+........+..|..+++.|+...+. ++....+|..+++.
T Consensus       283 ~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~  362 (396)
T TIGR00882       283 AKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST  362 (396)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence            35566666767777666667788888888889999988765555666678888888888887666 67778888888877


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      +++.     ||+..|.+.++..++..+...
T Consensus       363 l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       363 LAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            6655     899999999998887776654

>KOG3810|consensus

Probab=96.48  E-value=0.042  Score=46.89  Aligned_cols=199  Identities=13%  Similarity=0.088  Sum_probs=118.1

Q ss_pred             hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-------hhHHHHHHH
Q psy16653         22 FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-------TYTVIAIGC   94 (301)
Q Consensus        22 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-------~Wr~~f~~~   94 (301)
                      -+.++.+.+=+.-++.|...+ .-..-++|+-+..+|+++.++.+..-.....|...+..++..       +.+.+-.+.
T Consensus        90 v~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~IS  168 (433)
T KOG3810|consen   90 VFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYIS  168 (433)
T ss_pred             HhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhh
Confidence            445666777777777777653 444567899999999999999999888888888888777654       556666665


Q ss_pred             HHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHH-HHHHHHHHhhccchhhhhhccchhHHHH
Q psy16653         95 LAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAA-IQREIDAAARKKASFSDLVSSRANLRAL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (301)
                      ..-..+..++.. ++|-.+|-+.-+.+.++..  ..+....+  ...+..+ .+.....   -..++.+..++|     .
T Consensus       169 L~~~~ia~~~A~-fLP~v~rSl~f~~~~~~~~--v~~~e~~~--~~~~~~~~l~~~~~~---l~~~l~~~y~np-----~  235 (433)
T KOG3810|consen  169 LAEVTIAVLLAL-FLPRVKRSLYFHRLEDKIS--VGDLEEMN--PQASYMSYLRGAFVL---LWRDLQECYSNP-----R  235 (433)
T ss_pred             HHHHHHHHHHHh-hCCCCchhhhhhcccccce--eccchhcC--ccchhhHHHHHHHHH---HHHHHHHHhcCc-----h
Confidence            555555555555 8887776655444433211  11110010  0111111 0100000   011233344444     3


Q ss_pred             HHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        174 IISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF  253 (301)
Q Consensus       174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~  253 (301)
                      +.-..+|+...-+|++-+.+|.-.+-++.. +                     +.-....|..-++.-+.++++.++.++
T Consensus       236 ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~---------------------~~~~vyNG~veAv~tlLGa~~~~~~g~  293 (433)
T KOG3810|consen  236 LLKWSLWWALASCGYYQVTNYTQILWKEVA-P---------------------NPANVYNGAVEAVSTLLGAIAALAAGY  293 (433)
T ss_pred             hhhhHHHHHHhhchhHHHHHHHHHHHHhhC-C---------------------CchhhhcCHHHHHHHHHHHHHHHHHHh
Confidence            444667777777788889898888877763 2                     112345666666667777777777776


Q ss_pred             HHH
Q psy16653        254 LVR  256 (301)
Q Consensus       254 l~~  256 (301)
                      +.-
T Consensus       294 l~i  296 (433)
T KOG3810|consen  294 LNI  296 (433)
T ss_pred             eee
Confidence            653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.45  E-value=0.0012  Score=66.62  Aligned_cols=80  Identities=8%  Similarity=-0.079  Sum_probs=62.4

Q ss_pred             CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHH
Q psy16653         25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS------TYTVIAIGCLAVP   98 (301)
Q Consensus        25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~------~Wr~~f~~~~~~~   98 (301)
                      .+.+.+++.-++.|++.|...+...+++.+.+|+++||+++++.+....+|..+++.+...      ++...+++.++..
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  411 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALAN  411 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            5556666778889999999999999999999999999999999999888888877766543      5666666666554


Q ss_pred             HHHHHH
Q psy16653         99 ILLLVL  104 (301)
Q Consensus        99 ~~~~~~  104 (301)
                      ++..+.
T Consensus       412 ~~~~~~  417 (1140)
T PRK06814        412 LIVAIL  417 (1140)
T ss_pred             HHHHHH
Confidence            444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.39  E-value=0.041  Score=49.47  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAAT  263 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~  263 (301)
                      +...+|++.|++++|+.+....+|.++++.+.+. ...+||+..
T Consensus       139 I~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y  181 (511)
T TIGR00806       139 IFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY  181 (511)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence            8889999999999999999999999999999998 556788754

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0254|consensus

Probab=96.38  E-value=0.11  Score=47.76  Aligned_cols=65  Identities=15%  Similarity=0.277  Sum_probs=50.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--CcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF--GSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      .+|+.|++.||.-.+..+....+|..++ ++.+...++.  +|+..+.+..+.+++-.+. .++.||+.
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            6788899999999999998888777766 6666666553  7987777777777777777 66678754

>TIGR00788 fbt folate/biopterin transporter

Probab=96.34  E-value=0.0032  Score=57.09  Aligned_cols=86  Identities=16%  Similarity=0.149  Sum_probs=64.2

Q ss_pred             CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----h-------hHH-HH
Q psy16653         25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----T-------YTV-IA   91 (301)
Q Consensus        25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~-------Wr~-~f   91 (301)
                      ++.+.++..-++.+++.|........++.+.+|++++|...++.+...++|..++..++..     |       .++ ..
T Consensus       349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i  428 (468)
T TIGR00788       349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI  428 (468)
T ss_pred             CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence            3344556667788888889999999999999999999999999999999999998876543     1       222 23


Q ss_pred             HHHHHHHHHHHHHHhccccc
Q psy16653         92 IGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~E  111 (301)
                      .+..++.++.+...+ ++|+
T Consensus       429 ~i~~~~~l~~l~~~~-llP~  447 (468)
T TIGR00788       429 LGHSLAPLLPLPLLH-LLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHH-hCCC
Confidence            344555555555555 7886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.12  E-value=0.043  Score=48.89  Aligned_cols=65  Identities=11%  Similarity=0.117  Sum_probs=49.4

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hhCcchhHHHHHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR--------------------------HFGSAATFWIFTVCCVV  273 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~--------------------------~~~~~~~~~~~~~~~~~  273 (301)
                      ..+..|++.|++..++.+....+|..++|.+.+.+..                          ..+|+.+|.+.+++.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~  198 (410)
T TIGR00885       119 ILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA  198 (410)
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999887742                          23588888888877666


Q ss_pred             HHHHhh-eeccc
Q psy16653        274 GTVFTF-MVVPE  284 (301)
Q Consensus       274 ~~~~~~-~~~~e  284 (301)
                      ..++.. ...||
T Consensus       199 ~~~~~~~~~~p~  210 (410)
T TIGR00885       199 VALLIMLTKMPA  210 (410)
T ss_pred             HHHHHHHhcCCC
Confidence            554443 33554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532|consensus

Probab=96.11  E-value=0.028  Score=50.78  Aligned_cols=65  Identities=15%  Similarity=0.321  Sum_probs=58.2

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-FGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      .+.-.|++.|++..++......+|.+++..+.+.+.+. .||+.+|.+.+++.++..++.+++..|
T Consensus       153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            78889999999999999999999999999999999998 999999999999988887776665544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.94  E-value=0.0035  Score=56.43  Aligned_cols=108  Identities=12%  Similarity=-0.103  Sum_probs=67.1

Q ss_pred             ccccccCccccchhhhh----ccC------CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653          6 LNQLALPDGGVGYEINF----KET------RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~----~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G   75 (301)
                      ++.++..+.++..+..+    ...      +...+............+..+....+..|.+|.+.|++..++......++
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~  397 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG  397 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence            55666666665555543    111      22222222222222222456777789999999999999999988877777


Q ss_pred             HHHHHHhccc----hh-HHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         76 ILYLYCLGLS----TY-TVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        76 ~~~~~~i~~~----~W-r~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ..+++.+...    .+ ...+.+.+...++..+..++++||+.
T Consensus       398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            7776655443    22 34555666666666666666999984

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.91  E-value=0.0013  Score=57.87  Aligned_cols=100  Identities=12%  Similarity=-0.036  Sum_probs=71.9

Q ss_pred             cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHH-HHHHHHHHHHHHhc
Q psy16653          5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQ-MFLTLGILYLYCLG   83 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~~~~i~   83 (301)
                      +++.++..+.+++.++....++.+.+++..++.|++.+...+....++.+. +++++++..++.+ .....|..+++.++
T Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~  349 (382)
T PRK11128        271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLS  349 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455556666666667788888888899999999998899999999987 6777888888775 55566767777766


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         84 LS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        84 ~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      +.     ++ ..++..+..+++.+++..
T Consensus       350 G~l~~~~g~-~~~~~~~~~~~~~~~~~~  376 (382)
T PRK11128        350 GFLYQHLGA-GVFWVMALVALPALFIRP  376 (382)
T ss_pred             HHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence            54     66 456666666665554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.86  E-value=0.004  Score=55.74  Aligned_cols=81  Identities=15%  Similarity=-0.113  Sum_probs=58.5

Q ss_pred             ccccccccCccccchhhhhcc-CCeeEEeeechhhhccCcccccchhhhhhccCC-------CCCccchhcHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKE-TRTVSIIVTPAQNMASDERDNITLNMLQKEGDA-------PTYLSALGSFFQMFLTLG   75 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~Rg~~~~~~~~~~~~G   75 (301)
                      ++...++..+.+++.++..+. .+.+.+++..++.|++.|...+....+++|..+       ++++|...++++....+|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g  366 (437)
T TIGR00792       287 KILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG  366 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence            344555555555555555443 344555667778899999889999999999875       556799999999888888


Q ss_pred             HHHHHHhcc
Q psy16653         76 ILYLYCLGL   84 (301)
Q Consensus        76 ~~~~~~i~~   84 (301)
                      ..+++.+.+
T Consensus       367 ~~lg~~i~g  375 (437)
T TIGR00792       367 QALAGFLVG  375 (437)
T ss_pred             HHHHHHHHH
Confidence            888876654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.83  E-value=0.003  Score=57.27  Aligned_cols=106  Identities=9%  Similarity=-0.188  Sum_probs=81.1

Q ss_pred             cccccccCccccchhhhhc--------cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH
Q psy16653          5 TLNQLALPDGGVGYEINFK--------ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI   76 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~   76 (301)
                      ++..+++.++.+-.+...+        ..+.+.+.+.-++.|+..|+..+..-.+.+|..|+++.+...+++....-...
T Consensus       350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss  429 (477)
T PF11700_consen  350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS  429 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            4455555555333333333        56667788888999999999999999999999999999999999998888888


Q ss_pred             HHHHHhccc------hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         77 LYLYCLGLS------TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        77 ~~~~~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                      .+++.+-+.      +-|+.++...++-++.+++.+ ++++
T Consensus       430 ~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~-~v~~  469 (477)
T PF11700_consen  430 WLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF-FVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh-hccc
Confidence            888776543      578888877777777776665 5654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.83  E-value=0.79  Score=41.04  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHH
Q psy16653        157 KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIA  236 (301)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~  236 (301)
                      ...|+..+++|.+...+-..++...      +..+...+..+++..|++                        ....|+.
T Consensus       249 ~~~w~~Y~~q~vflas~alalLY~T------VLsf~~lmt~yl~~~G~s------------------------~~~igi~  298 (432)
T PF06963_consen  249 IRGWRTYFRQPVFLASFALALLYFT------VLSFGGLMTAYLKSQGYS------------------------PSVIGIF  298 (432)
T ss_pred             hccHHHHHhCHHHHHHHHHHHHHHH------HhcCcHHHHHHHHHCCCC------------------------HHHHHHH
Confidence            3467777777733332322222221      223344566777777877                        5567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCc
Q psy16653        237 VAVNWIGAFLVTLCFGFLVRHFGS  260 (301)
Q Consensus       237 ~~~~~~~~~i~~~~~~~l~~~~~~  260 (301)
                      -..+.+.++.+++++|++.+++|.
T Consensus       299 R~~gav~Gl~gT~~~p~l~~riGl  322 (432)
T PF06963_consen  299 RGLGAVFGLLGTWVYPWLMKRIGL  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999998883

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2504|consensus

Probab=95.62  E-value=0.00077  Score=61.47  Aligned_cols=105  Identities=17%  Similarity=0.019  Sum_probs=95.4

Q ss_pred             cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653          5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL   84 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~   84 (301)
                      +++.+++...+++.....+.++++.+...-.+.|+..|.........+.|..+.++-..+.++......++.++++.+++
T Consensus       366 ~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  366 VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            45667788888888999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             c------hhHHHHHHHHHHHHHHHHHHhcccc
Q psy16653         85 S------TYTVIAIGCLAVPILLLVLFFLVVP  110 (301)
Q Consensus        85 ~------~Wr~~f~~~~~~~~~~~~~~~~~~~  110 (301)
                      .      +|...|+..++..++..+.++ ..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~~-~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVLLL-ILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHHHH-HhH
Confidence            6      699999999999999888776 565

>PTZ00207 hypothetical protein; Provisional

Probab=95.51  E-value=0.24  Score=46.20  Aligned_cols=62  Identities=11%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP  283 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +.+.+| +.||.+.|+......+|+.+.+.+...+.. .+++..|++.+++.++.+++.+.+.+
T Consensus       145 i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        145 VLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            677887 679999999999999999765555444443 24666777777777666655554443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.20  E-value=0.12  Score=42.43  Aligned_cols=48  Identities=15%  Similarity=0.171  Sum_probs=38.9

Q ss_pred             CCccchhcHHHHHHHHHHHHHHHh---c-cc------hhHHHHHHHHHHHHHHHHHHh
Q psy16653         59 TYLSALGSFFQMFLTLGILYLYCL---G-LS------TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        59 ~~Rg~~~~~~~~~~~~G~~~~~~i---~-~~------~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      ++|+..+.+...+.++|.+++.+.   + ..      .|++++.+.+++.++.+++..
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~   59 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI   59 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888999999999999887433   2 11      899999999999988887776

>KOG2533|consensus

Probab=95.15  E-value=0.019  Score=52.16  Aligned_cols=68  Identities=19%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR------HFGSAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ++..|.++.|+...|+.++...+|+++++.+...+.+      ..||++.|++-+++.+...+++++++|+...
T Consensus       159 lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  159 LGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            7778899999999999999999999999998877533      4689999999999999999999999998654

>PRK09848 glucuronide transporter; Provisional

Probab=95.13  E-value=0.0064  Score=54.79  Aligned_cols=80  Identities=13%  Similarity=-0.026  Sum_probs=58.2

Q ss_pred             ccccccccCccccchhhhhccC--CeeEEeeechhhhccCcccccchhhhhhccCCCC-------CccchhcHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKET--RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPT-------YLSALGSFFQMFLTL   74 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~-------~Rg~~~~~~~~~~~~   74 (301)
                      ++...++..+++++.++..+.+  +++.+.+..++.|+|.+...+...++.+|..|.+       ++|...++++....+
T Consensus       294 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl  373 (448)
T PRK09848        294 KNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC  373 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence            3455566666666665555533  4555566677899999999999999999998754       358888998888888


Q ss_pred             HHHHHHHhc
Q psy16653         75 GILYLYCLG   83 (301)
Q Consensus        75 G~~~~~~i~   83 (301)
                      |..++..+.
T Consensus       374 g~aig~~i~  382 (448)
T PRK09848        374 GQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHH
Confidence            888876553

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.11  E-value=0.69  Score=42.17  Aligned_cols=35  Identities=11%  Similarity=0.066  Sum_probs=30.8

Q ss_pred             hhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653         49 NMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG   83 (301)
Q Consensus        49 ~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~   83 (301)
                      ..+..|.++.+|-.|..+++..+.++|.+++.-+.
T Consensus       166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~  200 (491)
T PF03219_consen  166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLT  200 (491)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66889999999999999999999999999876553

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.08  E-value=0.0018  Score=57.05  Aligned_cols=111  Identities=11%  Similarity=-0.098  Sum_probs=84.8

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYC   81 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~   81 (301)
                      ||+.+.++..+..+=-..++++++.+.+.+.+.++|+-.+........|+++.+|++...+...+ .+.+..+|..+...
T Consensus       288 ~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~  367 (412)
T PF01306_consen  288 AKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSP  367 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555556556666667788999999999999999999999999999999999999887777666 46777777777666


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      +++.     |.+..|++.+.+.+...++..+.+++.+
T Consensus       368 ~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  368 LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            6654     8899999999998888888875565443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.07  E-value=0.067  Score=46.72  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=47.3

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV--------RHFGSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      .+|.+|++.|+...++......+|..+++.+.+.+.        +..+|+.++.+.+.+.+++..+. ...||+
T Consensus       121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~  193 (394)
T TIGR00883       121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR-RNLEET  193 (394)
T ss_pred             hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            778899999999999999999999999888766553        34578878777666555544333 334554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.00  E-value=0.052  Score=44.66  Aligned_cols=61  Identities=18%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH-HHHHHhheec
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV-VGTVFTFMVV  282 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  282 (301)
                      ..+.||. .||++.|+.-....+++.+-..+...+.+. +....+.+.+.... ++.+..++..
T Consensus       121 ~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  121 CVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhhhee
Confidence            6688986 699999999999999988888777666654 33233334444333 3333334433

>KOG0253|consensus

Probab=94.93  E-value=0.0048  Score=53.05  Aligned_cols=104  Identities=11%  Similarity=-0.088  Sum_probs=80.8

Q ss_pred             cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-
Q psy16653          7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-   85 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-   85 (301)
                      |..++.++++..++-....+.....+.-+..-+..++.+.++++|.-|++|.+-|+...|.-..+.-+|.++.++++-. 
T Consensus       414 Mal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~  493 (528)
T KOG0253|consen  414 MALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRA  493 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHh
Confidence            4455667777777777766666666666666667788899999999999999999999999999999999999988733 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         86 --TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        86 --~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                        +=..+..+.+...++..+... ++|=
T Consensus       494 e~s~sl~i~vy~~~~ilagIavc-ffPi  520 (528)
T KOG0253|consen  494 ELSTSLPIFVYGALFILAGIAVC-FFPI  520 (528)
T ss_pred             ccceeehHHHHHHHHHHHHHHhe-eeee
Confidence              444556677777777777777 6663

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.88  E-value=0.019  Score=51.23  Aligned_cols=63  Identities=16%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             ccccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653        220 MFDCIPFQV--KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       220 ~~e~~p~~~--R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                      ..|++|++.  |..+.++.+...++|++++|.+.+++.+++||...|...++-..++.+..++..
T Consensus       142 lg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         142 LGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888887643  788899999999999999999999999999998888777777777776665543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.86  E-value=0.0064  Score=50.71  Aligned_cols=88  Identities=11%  Similarity=-0.069  Sum_probs=68.1

Q ss_pred             ccchhhhhccCC--eeEEeeechhhhccCcccccchhhhhhccCCC-CCccchhcHHHH-HHHHHHHHHHHhccc-----
Q psy16653         15 GVGYEINFKETR--TVSIIVTPAQNMASDERDNITLNMLQKEGDAP-TYLSALGSFFQM-FLTLGILYLYCLGLS-----   85 (301)
Q Consensus        15 ~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~Rg~~~~~~~~-~~~~G~~~~~~i~~~-----   85 (301)
                      .++.++..+..+  .+.+++.|+..|++.|...+....++.|+.|+ ++|+...+.... ...+|.++++.++..     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
T COG0477          80 LLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL  159 (338)
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666655  88899999999999999999999999999998 788888888777 577777777655432     


Q ss_pred             --hhHHHHHHHHHHHHHHH
Q psy16653         86 --TYTVIAIGCLAVPILLL  102 (301)
Q Consensus        86 --~Wr~~f~~~~~~~~~~~  102 (301)
                        +||..|...........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~  178 (338)
T COG0477         160 LWGWRAAFLLAALLGLLLL  178 (338)
T ss_pred             hcchHHHHHHHHHHHHHHH
Confidence              79997777776665443

>KOG3762|consensus

Probab=94.61  E-value=0.023  Score=51.30  Aligned_cols=100  Identities=11%  Similarity=-0.080  Sum_probs=75.5

Q ss_pred             cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHH-HHHHHHHHHHHhccc
Q psy16653          7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQM-FLTLGILYLYCLGLS   85 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~~G~~~~~~i~~~   85 (301)
                      +..++.++++=-+.-....|.|+.+-.-+++|+..+..+.....|++...||+-|..+.++.+. ...+|--+|.++++.
T Consensus       439 ~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~  518 (618)
T KOG3762|consen  439 MYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF  518 (618)
T ss_pred             eeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence            3444444444445556778999999999999999999999999999999999999999998764 345555555555544


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         86 -----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        86 -----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                           +=|..|.+.++-+++.+++..
T Consensus       519 ~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  519 VVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hheeehhHHHHHHHHHHHHHHHHHHH
Confidence                 777777777777776665554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.53  E-value=0.11  Score=49.16  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------CcchhHHHHHHHHHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF----------------------GSAATFWIFTVCCVVGTVF  277 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~  277 (301)
                      +.|.+|++.|+...|+.+....+|..+++.+.+.+.+.+                      +|+..|++.+++.++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999998887643                      1445677777777666554


Q ss_pred             hheecccC
Q psy16653        278 TFMVVPET  285 (301)
Q Consensus       278 ~~~~~~et  285 (301)
                      .++ .|++
T Consensus       277 l~~-~p~~  283 (633)
T TIGR00805       277 FFF-FPKA  283 (633)
T ss_pred             HHh-Cccc
Confidence            443 4443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3762|consensus

Probab=94.52  E-value=0.18  Score=45.74  Aligned_cols=61  Identities=28%  Similarity=0.451  Sum_probs=50.9

Q ss_pred             ccccCCcchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653        220 MFDCIPFQVKGIATGIAVAVN-WIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM  280 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~-~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (301)
                      ++.+.|++.|+++.++..... -+|-.+|.++.+.+.+.++.+..|.++++.|++.+++...
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999988664 5566788888888999999888999999888877766543

>KOG0569|consensus

Probab=94.40  E-value=0.14  Score=46.27  Aligned_cols=70  Identities=14%  Similarity=0.002  Sum_probs=51.3

Q ss_pred             ccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         43 RDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL-----GLSTYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        43 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      |..|+...+.+|.+|++.|..++++-.....+...+-...     ...|= +.|++..++..+.++..++++|||.
T Consensus       384 G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  384 GPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             CCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            4678889999999999999999887554443333332211     22232 8888889999998888888999984

>KOG0255|consensus

Probab=94.40  E-value=0.52  Score=43.40  Aligned_cols=63  Identities=14%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      .+|+++++.|+.+..+ ....+.++..++....++..  +|+..+++..+...+..++ +++.||.+
T Consensus       196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            8999999999999999 88888899988888888876  7888888888777777666 44455643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.28  E-value=0.015  Score=50.77  Aligned_cols=109  Identities=6%  Similarity=-0.122  Sum_probs=85.2

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|++..+++.+..+.++...+......+.+.-++.|.+.|+.....-.|.++..|+++-++..+++....-.+..+++.+
T Consensus       317 ~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l  396 (438)
T COG2270         317 SKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL  396 (438)
T ss_pred             CceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence            45666667766666666666666666677778899999999999999999999999999999999998887777777766


Q ss_pred             ccc------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         83 GLS------TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        83 ~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      -..      +=|.-+....++-++-+++.. .+|+.
T Consensus       397 v~v~t~iTg~~r~g~~~i~vll~iGl~~L~-~v~~~  431 (438)
T COG2270         397 VAVITQITGSSRAGVLSIIVLLLIGLLLLL-RVKVP  431 (438)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHHhhHhhEE-eecCC
Confidence            433      677777777776666666665 77764

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.13  E-value=0.02  Score=50.34  Aligned_cols=79  Identities=10%  Similarity=-0.028  Sum_probs=65.4

Q ss_pred             eEEeeechhhhccCcccccchhhhhhccCCCCC---ccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Q psy16653         28 VSIIVTPAQNMASDERDNITLNMLQKEGDAPTY---LSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPI   99 (301)
Q Consensus        28 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~   99 (301)
                      ..+.++-.+.++|.|+.=|....+.+|-+++++   |.+...++..+.++|.+++..+..+     +|.+.|.+.++..+
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            457778889999999999999999999998764   4455567789999999999888765     89999999988888


Q ss_pred             HHHHHHh
Q psy16653        100 LLLVLFF  106 (301)
Q Consensus       100 ~~~~~~~  106 (301)
                      +..+..+
T Consensus       114 ~~~~~f~  120 (372)
T PF00854_consen  114 LALIVFL  120 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777655

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10133 L-fucose transporter; Provisional

Probab=94.00  E-value=0.69  Score=41.66  Aligned_cols=36  Identities=17%  Similarity=0.079  Sum_probs=28.0

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV  255 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~  255 (301)
                      ..|..|.+.|....++.+....+|..+++.+.+.+.
T Consensus       142 v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667777777889999999999999988766543

>KOG2816|consensus

Probab=93.97  E-value=0.73  Score=41.74  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=66.0

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ  292 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~  292 (301)
                      .++....+.|..+.|+.+..-+.+..++|.+.+...+..|...+|.+-.+..++..++..+..||+...+.++
T Consensus       137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            7788888999999999999999999999999999999999988999999999999999999999987666553

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=93.73  E-value=2.5  Score=38.22  Aligned_cols=58  Identities=10%  Similarity=0.064  Sum_probs=42.0

Q ss_pred             hhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc--h-------------hHHHHHHHHHHHHHHHHHHh
Q psy16653         49 NMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--T-------------YTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        49 ~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--~-------------Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      ..+..|.+.-+|-.|..++++.+.+++.+++..+..+  .             -+..+.+.+..++++..+.+
T Consensus       170 w~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~  242 (509)
T COG3202         170 WQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYR  242 (509)
T ss_pred             HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466788899999999999999999999998877654  3             34445555555555555544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.73  E-value=0.8  Score=41.18  Aligned_cols=62  Identities=21%  Similarity=0.322  Sum_probs=51.5

Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        224 IPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       224 ~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      -|.+ |+.-.+.+..+..+|++++..+.+++.+..+++..|.+.+++..+..+..++..+|.+
T Consensus       118 ~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~  179 (433)
T PF03092_consen  118 EPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK  179 (433)
T ss_pred             CCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc
Confidence            3555 8888999999999999999999999999999998888888888877777777677633

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR01272 gluP glucose/galactose transporter

Probab=93.66  E-value=0.18  Score=43.16  Aligned_cols=68  Identities=16%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hCcchhHHHHHHHHH-HHHHHhheec
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH----------------FGSAATFWIFTVCCV-VGTVFTFMVV  282 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~  282 (301)
                      ++++.|++.+++..++.+.+..+|..++|.+.+.+...                .+|+.++++.+.+.. +..++.+...
T Consensus        35 v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~  114 (310)
T TIGR01272        35 VSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPL  114 (310)
T ss_pred             HHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            44455667789999999999999999999999987732                356677776655544 4444445556


Q ss_pred             ccCCC
Q psy16653        283 PETKG  287 (301)
Q Consensus       283 ~et~~  287 (301)
                      ||.++
T Consensus       115 p~~~~  119 (310)
T TIGR01272       115 PELQE  119 (310)
T ss_pred             CCCCc
Confidence            66543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=92.64  E-value=7.7  Score=35.18  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------cchhHHHHHHHHHHHHHHhheecccC
Q psy16653        226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-------SAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       226 ~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      ++.|+...++-...+.+++.+++.+..++.+..|       |.....+++++.+++..+++...+|.
T Consensus       141 ~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        141 PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            5779999999999999988888777666655543       33444555665555555555545554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.59  E-value=0.46  Score=41.01  Aligned_cols=94  Identities=7%  Similarity=-0.013  Sum_probs=50.0

Q ss_pred             hhhccCCeeEEeeechhhhccCcccccchhh-hhhccCCCCCccchh-cHHHHHHHHHH----HHHHHhccc-------h
Q psy16653         20 INFKETRTVSIIVTPAQNMASDERDNITLNM-LQKEGDAPTYLSALG-SFFQMFLTLGI----LYLYCLGLS-------T   86 (301)
Q Consensus        20 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~-~i~e~~~~~~Rg~~~-~~~~~~~~~G~----~~~~~i~~~-------~   86 (301)
                      ++-..+++..++++|++.|++.+..+.+--. ++.|.-....+.... ..+..+..+++    +.+.+++..       |
T Consensus       114 l~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g  193 (354)
T PF05631_consen  114 LTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG  193 (354)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence            4556688999999999999998776665443 555543222221111 11111111222    222222222       3


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         87 YTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        87 Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      -..+|.....+..+..++.....+|++
T Consensus       194 ~vaPF~~a~~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  194 PVAPFDAAIVLLAVAAVLILKTWPENY  220 (354)
T ss_pred             CcchHHHHHHHHHHHHHHHHhcccccC
Confidence            366777776666665555543556653

>KOG3098|consensus

Probab=92.05  E-value=2.2  Score=38.52  Aligned_cols=79  Identities=6%  Similarity=-0.193  Sum_probs=57.4

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      ||..+.++...+..-.. ..+-+|-+.+.++-.+.|+|.+..+.....|++|.++++.+.+..++.-.....+.++|.++
T Consensus        79 ~K~~lv~ga~~y~~f~~-gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen   79 PKWALVIGATCYAAFPL-GFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             HHHHHHHHhHHHHHHHH-HHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence            44444444444433222 22335567788889999999999999999999999999999999998777777666666444

>TIGR00896 CynX cyanate transporter

Probab=91.99  E-value=7.5  Score=33.57  Aligned_cols=53  Identities=21%  Similarity=0.171  Sum_probs=39.6

Q ss_pred             cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cchhHHHHHHHHHHH
Q psy16653        221 FDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG--SAATFWIFTVCCVVG  274 (301)
Q Consensus       221 ~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~~~~~~~~~  274 (301)
                      .|.+| +.|+.+.++.+....++..+++.+.+.+.++.+  |+..|.+.+++.+++
T Consensus       113 ~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       113 KRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            34454 468999999999999999999999888877653  777776666554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=91.86  E-value=0.015  Score=44.03  Aligned_cols=61  Identities=5%  Similarity=-0.060  Sum_probs=51.3

Q ss_pred             hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653         22 FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus        22 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      .+-++.+.++.+-.+.|++.+...+....|+.+.++++.|++..+++-.....+.++|.++
T Consensus        84 ~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen   84 FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3466778899999999999999999999999999999999999988766666666665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.52  E-value=0.012  Score=51.64  Aligned_cols=67  Identities=15%  Similarity=-0.072  Sum_probs=59.6

Q ss_pred             hhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653         19 EINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS   85 (301)
Q Consensus        19 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~   85 (301)
                      .+..+.++.+.+++.-+..|+-.|..|+.+...+.|-.|+++|.+.++....+.+.|++++.+++..
T Consensus       327 s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  327 SWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3444567888888889999999999999999999999999999999999999999999999988754

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.50  E-value=0.18  Score=44.43  Aligned_cols=98  Identities=12%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             cCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh----ccc-
Q psy16653         11 LPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL----GLS-   85 (301)
Q Consensus        11 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i----~~~-   85 (301)
                      ..+..+|.++.+++++.+.=+++-.+.+++.|..-..-..+.+ .+++    ...+-|..+...+.++|...    ... 
T Consensus        96 ~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g  170 (402)
T PF02487_consen   96 VALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLG  170 (402)
T ss_pred             HHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhC
Confidence            4456677888888888888788888888888877776666644 4444    34555666555555555443    222 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         86 -TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        86 -~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                       +-|..++....++++.++..++.+|.++
T Consensus       171 ~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  171 LSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence             5577777777777666666553555443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=90.74  E-value=3.3  Score=27.14  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=47.5

Q ss_pred             hhchHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy16653        185 FSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATF  264 (301)
Q Consensus       185 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~  264 (301)
                      +.+...+.-|.|.++++.|++                        ..-+|+...+..+...+++.+.+.+.|.++.+-..
T Consensus        13 f~~~g~~~Pfl~~~~~~~Gl~------------------------~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen   13 FAALGCLYPFLPLYLKQLGLS------------------------PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHHHHHHHhhhhHhhhhcCCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            344567777888899988888                        55678888899999999999999999998876554


Q ss_pred             HHHH
Q psy16653        265 WIFT  268 (301)
Q Consensus       265 ~~~~  268 (301)
                      ...+
T Consensus        69 l~~~   72 (77)
T PF12832_consen   69 LLGS   72 (77)
T ss_pred             HHHH
Confidence            4443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=90.16  E-value=0.26  Score=40.61  Aligned_cols=86  Identities=10%  Similarity=-0.005  Sum_probs=56.5

Q ss_pred             CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHH
Q psy16653         26 RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPIL  100 (301)
Q Consensus        26 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~  100 (301)
                      .++.+.+..++.|.+.+...........+.+| ++||.+.++.-....++..+-.-+...     .-+..+++...+.++
T Consensus        95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v  173 (250)
T PF06813_consen   95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVV  173 (250)
T ss_pred             chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            44555556667777666666666666678887 589999999988887777665444322     456666666666666


Q ss_pred             HHHHHhcccccch
Q psy16653        101 LLVLFFLVVPETP  113 (301)
Q Consensus       101 ~~~~~~~~~~Esp  113 (301)
                      .++..+ +++..|
T Consensus       174 ~l~~~~-~vr~~~  185 (250)
T PF06813_consen  174 CLVAMF-FVRPVP  185 (250)
T ss_pred             HHHHhh-heeccC
Confidence            665555 555444

>KOG2325|consensus

Probab=89.37  E-value=7.7  Score=35.32  Aligned_cols=111  Identities=13%  Similarity=0.176  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHhHHH------HHHhc--CCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHH
Q psy16653        170 LRALIISLGLMVFQQFSGVNAVIFYSND------IFKSA--GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNW  241 (301)
Q Consensus       170 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~--g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~  241 (301)
                      +++++..+++..+.+.  .|....|.|.      ++...  |++.+.. ..+...   +++.-..+.|.++.+......-
T Consensus       102 k~Pli~s~ii~~~g~l--lY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y---~a~~s~~~dR~rA~a~~~~~~v  175 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNL--LYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAY---IADASTVEDRPRAFAATSGGFV  175 (488)
T ss_pred             ccCHHHHHHHHHHHHH--HHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHH---HHhccCccchHHHHHHhhhHHH
Confidence            6778888887777665  3433334333      11111  4442221 111111   4444445667777777777666


Q ss_pred             HHHHHHHHHHHHHHHh------------hC-cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653        242 IGAFLVTLCFGFLVRH------------FG-SAATFWIFTVCCVVGTVFTFMVVPETK  286 (301)
Q Consensus       242 ~~~~i~~~~~~~l~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~et~  286 (301)
                      ++.++||.+-+.+..-            ++ +..+-++..++.++..+..+++.+|..
T Consensus       176 lg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  176 LGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            7777776655433321            11 334667777888888888887777744

>KOG0252|consensus

Probab=89.31  E-value=0.14  Score=45.63  Aligned_cols=108  Identities=11%  Similarity=-0.053  Sum_probs=74.9

Q ss_pred             cccccccCccccchhhhhccCC-ee---EEeee-chhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          5 TLNQLALPDGGVGYEINFKETR-TV---SIIVT-PAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~~~~~-~~---~l~~~-r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      .+-..+..++.+..+..++..+ ..   .+++. -+.+-++.=+......++-+|.+|..-||..-++.....-.|.+++
T Consensus       379 ~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg  458 (538)
T KOG0252|consen  379 YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVG  458 (538)
T ss_pred             HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHH
Confidence            3344556666666666666665 11   11221 1122233445566667788999999999999999988888887777


Q ss_pred             HHhcc---------c-hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         80 YCLGL---------S-TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        80 ~~i~~---------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      ...-.         . +-|..+++.+...++..+..+ ++|||.
T Consensus       459 ~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk  501 (538)
T KOG0252|consen  459 AFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETK  501 (538)
T ss_pred             HHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeeccc
Confidence            54421         1 789999999999999888888 899986

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=87.33  E-value=0.36  Score=42.37  Aligned_cols=86  Identities=9%  Similarity=-0.159  Sum_probs=70.7

Q ss_pred             hhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---------------
Q psy16653         21 NFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS---------------   85 (301)
Q Consensus        21 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~---------------   85 (301)
                      .+...+.+.+..+-++.|++.|...+.+...+-+..++++-|..++.|.....+..-++..++..               
T Consensus       295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~  374 (403)
T PF03209_consen  295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPAL  374 (403)
T ss_pred             HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch
Confidence            34455677788888999999999999999999999999999999999998877777776666432               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q psy16653         86 TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        86 ~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      ++-.+|.+.++.-++.+++..
T Consensus       375 aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  375 AYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            688899999888877766654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=86.82  E-value=1.4  Score=39.45  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             ccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------cchhHHHHHHHHHHHHHHhheeccc
Q psy16653        220 MFDCIPF-QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-------SAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       220 ~~e~~p~-~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      .+|+.++ +.|....++-.....+|+.+...+.+.+.+..+       ++....+.+++..++.++.++..||
T Consensus       128 ~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  128 IPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             CccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            6677764 679999999999999988877777777665433       5556677777788888787777787

>PRK09669 putative symporter YagG; Provisional

Probab=85.07  E-value=4.5  Score=36.34  Aligned_cols=66  Identities=17%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-------GSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      .+|+. +++.|....++......+|+.+++.+..++....       +|+..+.++++++.++.+..++..+|.
T Consensus       134 ~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        134 PGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            34444 3466888888888888888888776655554433       344456666666666655555544543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=82.29  E-value=0.97  Score=42.89  Aligned_cols=77  Identities=16%  Similarity=0.055  Sum_probs=58.2

Q ss_pred             EeeechhhhccCcccccchhhhhhccCCCCC---ccchhcHHHHHHHHHHHHHHHhccc------------hhHHHHHHH
Q psy16653         30 IIVTPAQNMASDERDNITLNMLQKEGDAPTY---LSALGSFFQMFLTLGILYLYCLGLS------------TYTVIAIGC   94 (301)
Q Consensus        30 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~~~~i~~~------------~Wr~~f~~~   94 (301)
                      .+++-.+..+|.|+.-|...+...|-+++++   |-....++..+.++|.+++..+..+            +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            4466677888999999999999999887654   4455566677888888877655321            599999999


Q ss_pred             HHHHHHHHHHHh
Q psy16653         95 LAVPILLLVLFF  106 (301)
Q Consensus        95 ~~~~~~~~~~~~  106 (301)
                      ++..++.+++..
T Consensus       168 ~i~m~ia~lvf~  179 (654)
T TIGR00926       168 AILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHH
Confidence            888887766654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=81.84  E-value=2.9  Score=36.67  Aligned_cols=56  Identities=9%  Similarity=0.006  Sum_probs=46.1

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhee
Q psy16653        226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMV  281 (301)
Q Consensus       226 ~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (301)
                      ++.|.....+.+...++|+.+++...+++.+++||...|.+.++..+++.+..+.-
T Consensus        67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            34578889999999999999999999999999999888888877777777666553

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=81.69  E-value=12  Score=33.18  Aligned_cols=72  Identities=17%  Similarity=0.079  Sum_probs=50.8

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hCcchhHHHHHHHHHHHHHHh-h
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-------------------FGSAATFWIFTVCCVVGTVFT-F  279 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~  279 (301)
                      ++.+.|++..+.-.++....+.+|+.++|.+.+++..+                   ..++.++...+....+..+.. .
T Consensus       129 v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         129 VTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL  208 (422)
T ss_pred             HHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            77778887778889999999999999999999887762                   125567777766655544444 3


Q ss_pred             eecccCCCCCHH
Q psy16653        280 MVVPETKGKTLA  291 (301)
Q Consensus       280 ~~~~et~~~~~~  291 (301)
                      ...|+.+..+.+
T Consensus       209 ~k~p~~~~~~~~  220 (422)
T COG0738         209 SKLPDLQVAAPS  220 (422)
T ss_pred             ccCCcCCccccc
Confidence            444665544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-06
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		4e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 110 PETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRAN 169
           PE+P +LM  G  ++AE  LR   G+     L   A+Q    +    + +   L+     
Sbjct: 221 PESPRWLMSRGKQEQAEGILRKIMGNT----LATQAVQEIKHSLDHGRKTGGRLL--MFG 274
Query: 170 LRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLD 207
           +  ++I + L +FQQF G+N V++Y+ ++FK+ G++ D
Sbjct: 275 VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD 312

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 222 DCIPFQVKGIATGIAVAVNWIGAFLVTLCF------GFLVRHFGSAATFWIXXXXXXXXX 275
           +  P  ++G A  IAVA  W+  + V+  F       +LV HF +  ++WI         
Sbjct: 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456
Query: 276 XXXXXXXPETKGKTLAQIQ 294
                  PETKGKTL +++
Sbjct: 457 LFMWKFVPETKGKTLEELE 475
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	9e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 222 DCIPFQVKGIATGIAVAVNWIGAFLVT-LCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM 280
           +  P +  G A G      ++G  +      G+ V  FG    F +     ++  +   +
Sbjct: 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432

Query: 281 VVPETKGKTLAQIQREL 297
           V+   + +   Q+ +EL
Sbjct: 433 VMIG-EKRRHEQLLQEL 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.88
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.8
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.69
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.66
2xut_A	524	Proton/peptide symporter family protein; transport	99.59
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.36
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.9
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.8
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.8
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.61
2xut_A	524	Proton/peptide symporter family protein; transport	97.54

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.5e-37  Score=280.14  Aligned_cols=290  Identities=24%  Similarity=0.393  Sum_probs=228.5

Q ss_pred             ccccccccCccccchhhhh------------------ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchh
Q psy16653          4 VTLNQLALPDGGVGYEINF------------------KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALG   65 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~   65 (301)
                      |+.+.++..++.+++++++                  .+++++.++++|+++|++.|+..++++.|++|++|+++||+..
T Consensus        85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            3456677788888888887                  4789999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhccc-------------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHh
Q psy16653         66 SFFQMFLTLGILYLYCLGLS-------------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFY  132 (301)
Q Consensus        66 ~~~~~~~~~G~~~~~~i~~~-------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~  132 (301)
                      ++.+.+...|.++++.++..             .||+.+.+..+++++..+..+ ++||||+|+..|++.|++.+.+++.
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~peSp~~L~~~~~~~~a~~~l~~~  243 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY-TVPESPRWLMSRGKQEQAEGILRKI  243 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG-GSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh-cCCCChHHHHHcCchhHHHHhHHHh
Confidence            99999999999998887532             699999999999999888888 9999999999999999999999988


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh
Q psy16653        133 RGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY  212 (301)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~  212 (301)
                      +.++...+ +..+.++..++++ +.......++    +++..+......++++++.+.+.+|.|.+.+..+.+.......
T Consensus       244 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (491)
T 4gc0_A          244 MGNTLATQ-AVQEIKHSLDHGR-KTGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQ  317 (491)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHH-HHTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             cCCchhHH-HHHHHHHHHHhhh-hhhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhH
Confidence            66432221 1111111111111 1111122222    2345666667778888999999999999999886553322211


Q ss_pred             -----------------Hhhhccc-----------------------------------------------------ccc
Q psy16653        213 -----------------IQDSLIS-----------------------------------------------------MFD  222 (301)
Q Consensus       213 -----------------l~~~v~~-----------------------------------------------------~~e  222 (301)
                                       +.|++++                                                     .+|
T Consensus       318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  397 (491)
T 4gc0_A          318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE  397 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                             4555544                                                     789


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHH
Q psy16653        223 CIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR------HFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRE  296 (301)
Q Consensus       223 ~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~  296 (301)
                      ++|++.|+++.|+++.++++++++++.++|.+.+      ..+...+|++++++++++.++.++++||||+|++||+|+.
T Consensus       398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            9999999999999999999999999999887644      3456668899999999999999999999999999999999


Q ss_pred             hccC
Q psy16653        297 LGGE  300 (301)
Q Consensus       297 ~~~~  300 (301)
                      ++++
T Consensus       478 f~~~  481 (491)
T 4gc0_A          478 WEPE  481 (491)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            9875

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.88  E-value=2.7e-24  Score=191.23  Aligned_cols=261  Identities=12%  Similarity=0.052  Sum_probs=188.1

Q ss_pred             ccccccccCccccchhhhhc----cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFK----ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      |+.+.++..+++++.++.++    +++++.++++|+++|++.|...+....++.|++|+++|++..++.+.+..+|.+++
T Consensus        92 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  171 (451)
T 1pw4_A           92 RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP  171 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHH
Confidence            55677888889999999999    99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccc-----h-hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q psy16653         80 YCLGLS-----T-YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAA  153 (301)
Q Consensus        80 ~~i~~~-----~-Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
                      +.++..     + ||+.|++.+++.++..++.++.+||+|+....+.+.++         +.  +.+++.+  +++.++.
T Consensus       172 ~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~--~~~~~~~  238 (451)
T 1pw4_A          172 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------KN--DYPDDYN--EKAEQEL  238 (451)
T ss_dssp             HHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------CC--C---------------
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------cc--cccccch--hhhhccc
Confidence            888754     7 99999999999988777666589999875322111110         00  0000000  0000000


Q ss_pred             hhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhh
Q psy16653        154 ARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQD  215 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~  215 (301)
                      ..++...++.+++|..+...+.    .+ ....+.+.+..+.|.++++ .|.+.......                 +.|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  313 (451)
T 1pw4_A          239 TAKQIFMQYVLPNKLLWYIAIA----NV-FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD  313 (451)
T ss_dssp             CCTHHHHHHTSSCHHHHHHHHH----HH-HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHcCHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111123556666533322222    12 2222356778888988887 45552221111                 556


Q ss_pred             hc--cc---------------------------------------------------ccccCCcchhhhHHHHHHHHHHH
Q psy16653        216 SL--IS---------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI  242 (301)
Q Consensus       216 ~v--~~---------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~  242 (301)
                      ++  ++                                                   ..|.+|++.|+++.|+.+...++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  393 (451)
T 1pw4_A          314 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  393 (451)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence            65  44                                                   78999999999999999999999


Q ss_pred             -HHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653        243 -GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV  282 (301)
Q Consensus       243 -~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (301)
                       ++.++|.+.+.+.++.|+...|.+.+++.+++.++.++..
T Consensus       394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999998888888888888777766543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.80  E-value=1.3e-19  Score=160.39  Aligned_cols=237  Identities=16%  Similarity=0.068  Sum_probs=171.2

Q ss_pred             ccccccccCccccchhhh---hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEIN---FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY   80 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~   80 (301)
                      |+.+.++..+++++.++.   .++++++.++++|++.|++.|...+....+++|++|+++|++..++.+.+..+|.++++
T Consensus        91 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  170 (438)
T 3o7q_A           91 KAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV  170 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            566778888889999999   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccc------h-------------------------hHHHHHHHHHHHHHHHHHHhc-ccccchhHHHhcCChHHHHHH
Q psy16653         81 CLGLS------T-------------------------YTVIAIGCLAVPILLLVLFFL-VVPETPIYLMKSGNNKKAEVS  128 (301)
Q Consensus        81 ~i~~~------~-------------------------Wr~~f~~~~~~~~~~~~~~~~-~~~Esp~~l~~~~~~~~a~~~  128 (301)
                      .++..      +                         ||+.|++.+++.++..++.++ ..||+++..   .+       
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-------  240 (438)
T 3o7q_A          171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-------  240 (438)
T ss_dssp             HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-------
T ss_pred             HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-------
Confidence            88765      2                         999998888777766555442 357665310   00       


Q ss_pred             HHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHH-HHhc-CCCC
Q psy16653        129 LRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDI-FKSA-GSTL  206 (301)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~-g~~~  206 (301)
                            ++ +              +++.+.++++++++|..+...+. ..+...    ....+..|.|.+ +++. |.+.
T Consensus       241 ------~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~g~~~  294 (438)
T 3o7q_A          241 ------DA-K--------------QGSFSASLSRLARIRHWRWAVLA-QFCYVG----AQTACWSYLIRYAVEEIPGMTA  294 (438)
T ss_dssp             ------CS-S--------------TTSHHHHHHHHTTCSHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHSTTCCH
T ss_pred             ------cc-c--------------ccchhhhHHHHHhChHHHHHHHH-HHHHHH----HHHHHHHHHHHHhhhccCCcch
Confidence                  00 0              01112345677777744433222 222221    245677888888 7776 5553


Q ss_pred             Ccchhh-----------------Hhhhccc-----------------------------------------------ccc
Q psy16653        207 DPGFSY-----------------IQDSLIS-----------------------------------------------MFD  222 (301)
Q Consensus       207 ~~~~~~-----------------l~~~v~~-----------------------------------------------~~e  222 (301)
                      ......                 +.|++++                                               ..|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  374 (438)
T 3o7q_A          295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIK  374 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221111                 4455444                                               689


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHh
Q psy16653        223 CIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFT  278 (301)
Q Consensus       223 ~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~  278 (301)
                      .+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++..|.+.+++.++..++.
T Consensus       375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  429 (438)
T 3o7q_A          375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA  429 (438)
T ss_dssp             SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred             hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            99977 899998887 778999999999999999998 8878776655555444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.69  E-value=1.1e-17  Score=150.35  Aligned_cols=103  Identities=10%  Similarity=-0.124  Sum_probs=90.7

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCC--ccchhcHHHHHHHHHHHHHHH
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY--LSALGSFFQMFLTLGILYLYC   81 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~~~~   81 (301)
                      |+.+.++..+++++.++.+++++++.++++|++.|++.|...+....+++|++|+++  |+...++++.+.++|..+++.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  164 (491)
T 4aps_A           85 RPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH
Confidence            566777888899999999999999999999999999999999999999999999999  667778889999999999988


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         82 LGLS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      ++..     +||+.|++.++..++..+...
T Consensus       165 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8765     899999998877776665554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.66  E-value=4.5e-19  Score=153.92  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=101.8

Q ss_pred             cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653          3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i   82 (301)
                      +|+.+.++..+.+++.++.+++++++.+++.|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.+
T Consensus        64 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  143 (375)
T 2gfp_A           64 RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI  143 (375)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            46777788888899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhH
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIY  115 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~  115 (301)
                      +..     +||+.|++.+++.++..+...+.+||+|+.
T Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          144 GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            765     899999999999888877555588998754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.59  E-value=1.3e-15  Score=138.01  Aligned_cols=104  Identities=8%  Similarity=-0.156  Sum_probs=91.4

Q ss_pred             cccccccccCccccchhhhhccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH---HHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF---FQMFLTLGILY   78 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~---~~~~~~~G~~~   78 (301)
                      +|+.+.++..+++++.++.++++ +++.+++.|++.|++.|...+....++.|++|+++|++..+.   .+.+.++|..+
T Consensus        84 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  163 (524)
T 2xut_A           84 KYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF  163 (524)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence            35567778888899999999998 999999999999999999999999999999999999887776   88899999999


Q ss_pred             HHHhccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653         79 LYCLGLS-----TYTVIAIGCLAVPILLLVLFF  106 (301)
Q Consensus        79 ~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~  106 (301)
                      ++.++..     +||+.|++.+++.++..+...
T Consensus       164 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9988765     899999999888777666654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.36  E-value=7.4e-15  Score=129.40  Aligned_cols=71  Identities=6%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             ccccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653        220 MFDCIPFQVKGIATGIA-VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL  290 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  290 (301)
                      .+|.+|++.|+++.++. +..+++++.++|.+.+.+.++.|+...|.+.+++++++.++.+...||+++.++
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            88999999999999995 788899999999999999998888778888888888888877777787665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.90  E-value=9.7e-06  Score=69.62  Aligned_cols=69  Identities=19%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGK  288 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  288 (301)
                      ..|.+|++.|+++.++.+....++..++|.+.+.+.++.+|+..+.+.++..++..+...+..||++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            789999999999999999999999999999999998888999999888888888877666777876543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.80  E-value=0.0002  Score=62.78  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=59.1

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKG  287 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~  287 (301)
                      ++|.+|++.|+.+.++.+....++..++|.+.+.+.+..| |+.+|++.++++++..++.++..||+++
T Consensus       144 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          144 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            6778889999999999999999999999999999889898 9999999998888877777666776543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.80  E-value=7.5e-05  Score=65.32  Aligned_cols=68  Identities=12%  Similarity=0.135  Sum_probs=52.9

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhC-------------------------cchhHHHHHHHHHH
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV-RHFG-------------------------SAATFWIFTVCCVV  273 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~-~~~~-------------------------~~~~~~~~~~~~~~  273 (301)
                      ++|.+|++.|+.+.++.+....+|..+++.+.+.+. +..+                         |+..|.+.+++..+
T Consensus       142 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  221 (438)
T 3o7q_A          142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL  221 (438)
T ss_dssp             HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999888 4444                         67788777766655


Q ss_pred             HHHHhh-eecccCCC
Q psy16653        274 GTVFTF-MVVPETKG  287 (301)
Q Consensus       274 ~~~~~~-~~~~et~~  287 (301)
                      ..++.+ ...||+++
T Consensus       222 ~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          222 VALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHHCCCCCCTT
T ss_pred             HHHHHHHHcCCcccc
Confidence            544443 33565443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.69  E-value=6e-06  Score=73.62  Aligned_cols=104  Identities=8%  Similarity=-0.047  Sum_probs=78.8

Q ss_pred             cccCccccchhhhhcc---------CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653          9 LALPDGGVGYEINFKE---------TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL   79 (301)
Q Consensus         9 ~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~   79 (301)
                      ++..+.+++.++....         .+.+.+.+.-++.|++.+...+....++.|..|+++||+..++.+....+|..++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~  438 (491)
T 4aps_A          359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN  438 (491)
T ss_dssp             HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555554444442         2556667778899999999999999999999999999999999999999999999


Q ss_pred             HHhccc----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         80 YCLGLS----TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        80 ~~i~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      +.+...    ++...|.+.+...++..++.++..++.
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988765    677788888888887777666444544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.62  E-value=7.1e-06  Score=73.11  Aligned_cols=71  Identities=11%  Similarity=-0.119  Sum_probs=55.9

Q ss_pred             ccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653         43 RDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----------TYTVIAIGCLAVPILLLVLFFLVVPE  111 (301)
Q Consensus        43 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----------~Wr~~f~~~~~~~~~~~~~~~~~~~E  111 (301)
                      +..++...|.+|.+|.+.|+...++......+|..+++.+...           ++.+.|++.+.++++..+..++++||
T Consensus       386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            3456778999999999999999999888777777776544221           45667888888888888877779999


Q ss_pred             ch
Q psy16653        112 TP  113 (301)
Q Consensus       112 sp  113 (301)
                      +.
T Consensus       466 Tk  467 (491)
T 4gc0_A          466 TK  467 (491)
T ss_dssp             CT
T ss_pred             CC
Confidence            84

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.61  E-value=1.8e-06  Score=75.68  Aligned_cols=108  Identities=9%  Similarity=-0.020  Sum_probs=81.4

Q ss_pred             ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHHhcc
Q psy16653          6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYCLGL   84 (301)
Q Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~i~~   84 (301)
                      +..++..+.+++.++.++.++.+.+++..++.+++.+...+....++.|..|++.||...++ ++....+|..+++.+++
T Consensus       291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G  370 (417)
T 2cfq_A          291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence            44445555556555666666767777777778877666667778899999999999998888 47777788888777765


Q ss_pred             c-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653         85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETP  113 (301)
Q Consensus        85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp  113 (301)
                      .     +|+..|.+.++..++..++.++..||.+
T Consensus       371 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            4     7889999989888887777665677755

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.54  E-value=9.5e-06  Score=73.01  Aligned_cols=106  Identities=13%  Similarity=0.050  Sum_probs=76.2

Q ss_pred             cccccCccccchhhhhcc---------CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653          7 NQLALPDGGVGYEINFKE---------TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL   77 (301)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~   77 (301)
                      +.+++.+.+++.++.+..         .+.+.+++.-++.|++.+...+....++.|..|+++||+.+++.+....+|..
T Consensus       376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  455 (524)
T 2xut_A          376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL  455 (524)
T ss_dssp             HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence            345555555655555543         35555667788999999999999999999999999999999999999999998


Q ss_pred             HHHHhccc-------hh---------HHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         78 YLYCLGLS-------TY---------TVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        78 ~~~~i~~~-------~W---------r~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      +++.+...       +|         +..|++.+...++..++.+++.++.
T Consensus       456 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          456 WVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88877654       35         4447777777777666665344443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-05
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 15/124 (12%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 172 ALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGI 231
            + I+  +            +     I       +     +  +         P +  G 
Sbjct: 327 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------PKKAAGT 379

Query: 232 ATGIAVAVNWI-GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290
           A G      ++ G+   +   G+ V  FG    F +     ++  +   +V+   K +  
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439

Query: 291 AQIQ 294
             +Q
Sbjct: 440 QLLQ 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 5/76 (6%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 220 MFDCIPFQVKGIATGIAVAV-NWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFT 278
           +      +       +       +    +++  G +    G    + +  +  +  T+ +
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396

Query: 279 FMVVPETKGKTLAQIQ 294
              +      +L + Q
Sbjct: 397 VFTLSGPGPLSLLRRQ 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.86
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.3
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.27
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.79

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.5e-23  Score=183.68  Aligned_cols=264  Identities=12%  Similarity=0.064  Sum_probs=179.2

Q ss_pred             cccccccccCccccchhhhhcc----CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653          3 PVTLNQLALPDGGVGYEINFKE----TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY   78 (301)
Q Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~   78 (301)
                      +|+.+.+++.+.+++.++.+++    .+++.+++.|++.|++.|...+....++.|++|+++|++..++++.+..+|..+
T Consensus        88 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i  167 (447)
T d1pw4a_          88 PRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI  167 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh
Confidence            3566677888888888887766    588889999999999999999999999999999999999999999999999988


Q ss_pred             HHHhccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653         79 LYCLGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA  152 (301)
Q Consensus        79 ~~~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
                      ++.++..      +||+.|++.+++.++..++.+++.+|+|+........++           ..+..++..  ++..++
T Consensus       168 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~  234 (447)
T d1pw4a_         168 PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDYN--EKAEQE  234 (447)
T ss_dssp             HHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC--------------
T ss_pred             hhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------hhhcccchh--hccccc
Confidence            8776543      899999999999988888777678888754321111110           000000000  000011


Q ss_pred             HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hh
Q psy16653        153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQ  214 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~  214 (301)
                      ...++...+..++++..+.......     ......+.+..+.|.++.+. +.+.......                 +.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  309 (447)
T d1pw4a_         235 LTAKQIFMQYVLPNKLLWYIAIANV-----FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS  309 (447)
T ss_dssp             -CCTHHHHHHTSSCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCchHHHHHHHhh-----hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhh
Confidence            1112223445555553222222211     12222566777788877664 3332211111                 33


Q ss_pred             hhccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHH
Q psy16653        215 DSLIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNW  241 (301)
Q Consensus       215 ~~v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~  241 (301)
                      |+..+                                                     ..|.+|++.|+++.|+.+..++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  389 (447)
T d1pw4a_         310 DKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  389 (447)
T ss_dssp             HHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             hhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            43322                                                     8999999999999999999988


Q ss_pred             HH-HHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653        242 IG-AFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE  284 (301)
Q Consensus       242 ~~-~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  284 (301)
                      ++ .+++|.+.+++.+++|++..+.+.+++++++.++.+++.++
T Consensus       390 ~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         390 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            85 56689999999999999888888888887777776665544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=5.3e-13  Score=113.64  Aligned_cols=73  Identities=5%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             ccccCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653        220 MFDCIPFQVKGIATGIAV-AVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ  292 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~-~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~  292 (301)
                      ..|.+|++.|+++.|+.. ....++..++|.+.+++.|+.|++.++++.+++++++.++..+.++++++.++++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            889999999999999865 5567899999999999999999999999999998888888888788777777644

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.4e-08  Score=85.55  Aligned_cols=109  Identities=8%  Similarity=-0.042  Sum_probs=90.4

Q ss_pred             ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHH-HHHHHHHHHHHHHh
Q psy16653          4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFF-QMFLTLGILYLYCL   82 (301)
Q Consensus         4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~-~~~~~~G~~~~~~i   82 (301)
                      ++...++..+.+++.++..+.++.+.+++.-++.|++.+...+....++.|..|+++||+..++. +....+|..+++.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  368 (417)
T d1pv7a_         289 KNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777888888899999999999999999999999999999999999999999999874 56667888777776


Q ss_pred             ccc-----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653         83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPET  112 (301)
Q Consensus        83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Es  112 (301)
                      .+.     ||+..|++.++..++..++..+.+++.
T Consensus       369 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            554     899999999999888877777455543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=2e-05  Score=66.87  Aligned_cols=66  Identities=17%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHhheecccC
Q psy16653        220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-GSAATFWIFTVCCVVGTVFTFMVVPET  285 (301)
Q Consensus       220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~et  285 (301)
                      .+|.+|++.|+.+.++.+....++..+++.+.+...+.. +|+..+++.+.+.++..++.+...+++
T Consensus       141 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            899999999999999999999999999998888777654 688888888888777777766666543