Psyllid ID: psy16661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTSTQNLN
Secondary Structure (PSIPRED)
cccccEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEcccccccEEEEEEEEEcccccEEEEccEEEEEEEccccccccEEEcccccccHHHHHccccEEEEEEEEcccccccccEEEcccccccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccEEEEEEEEEEccccEEEEEcEccccccEEEEEccccccEEEEEEEEEEEEEEEEEEEcEccccccEEEEEccccccEEEEEEEEEEEEEEEEEEEccEEEEEEEcccccccccEEcccccEEHHHHccccEEcccccEEcccccccccEEccccEEcccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MFPQMKFRVSGLDAKAKYILLLDIVasddfrykfhnrqmfpqmkfrvsgldAKAKYILLLDIVasddfrykfhnrrmfpaYKVRVMGLDKKAKYILLMDIVAaddcrykfhnsrwmvagkadpempkrmyihpdspstgdqWMQKVVSFHKLkltnnisdkhgfVMSASVDriagsndllldktstqnln
Flexible Loop (DISEMBL)
MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHnrrmfpaykvrvMGLDKKAKYILLMDIVAADDCRYKFHNSRWMvagkadpempkRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIagsndllldktstqnln
Low Complexity Region (SEG)
MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTSTQNLN
Disordered region (IsUnstruct)
*******RVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAG*********************QWMQKVVSFHKLKLTNNISDKHGFVMSASVDRI*****************
Disordered Region (DISOPRED)
MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMF***************YILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDL***********
Disordered Region (DISEMBL)
MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTSTQNLN
Disordered Region (DISPRO)
*FPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTSTQNLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q13207	712	T-box transcription facto	no	N/A	0.557	0.148	0.776	6e-48
Q863A2	712	T-box transcription facto	yes	N/A	0.557	0.148	0.776	8e-48
O15119	743	T-box transcription facto	yes	N/A	0.510	0.130	0.845	8e-48
Q60707	711	T-box transcription facto	no	N/A	0.557	0.149	0.776	1e-47
Q7TST9	743	T-box transcription facto	yes	N/A	0.510	0.130	0.845	1e-47
P70324	741	T-box transcription facto	yes	N/A	0.510	0.130	0.845	1e-47
O73718	414	T-box transcription facto	no	N/A	0.563	0.258	0.769	2e-47
Q3SA48	685	T-box transcription facto	no	N/A	0.563	0.156	0.769	3e-47
Q9IBC8	688	T-box transcription facto	N/A	N/A	0.563	0.155	0.769	3e-47
Q7ZTU9	687	T-box transcription facto	no	N/A	0.563	0.155	0.761	1e-46

>sp|Q13207|TBX2_HUMAN T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3

 Score =  189 bits (481), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 132 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 191

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 192 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.
Homo sapiens (taxid: 9606)

>sp|Q863A2|TBX2_CANFA T-box transcription factor TBX2 OS=Canis familiaris GN=TBX2 PE=3 SV=2

 Score =  189 bits (481), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 132 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 191

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 192 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.

Canis familiaris (taxid: 9615)

>sp|O15119|TBX3_HUMAN T-box transcription factor TBX3 OS=Homo sapiens GN=TBX3 PE=1 SV=4

 Score =  189 bits (481), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 130 RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 189

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVD 171
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF ++   D
Sbjct: 190 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAFPSD 226

Transcriptional repressor involved in developmental processes. Probably plays a role in limb pattern formation.

Homo sapiens (taxid: 9606)

>sp|Q60707|TBX2_MOUSE T-box transcription factor TBX2 OS=Mus musculus GN=Tbx2 PE=2 SV=3

 Score =  189 bits (480), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 132 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 191

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 192 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.

Mus musculus (taxid: 10090)

>sp|Q7TST9|TBX3_RAT T-box transcription factor TBX3 OS=Rattus norvegicus GN=Tbx3 PE=2 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 130 RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 189

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVD 171
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF ++   D
Sbjct: 190 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAFPSD 226

Transcriptional repressor involved in developmental processes. Probably plays a role in limb pattern formation.

Rattus norvegicus (taxid: 10116)

>sp|P70324|TBX3_MOUSE T-box transcription factor TBX3 OS=Mus musculus GN=Tbx3 PE=1 SV=3

 Score =  189 bits (479), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 130 RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 189

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVD 171
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF ++   D
Sbjct: 190 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAFPSD 226

Transcriptional repressor involved in developmental processes. Probably plays a role in limb pattern formation.

Mus musculus (taxid: 10090)

>sp|O73718|TBX3_CHICK T-box transcription factor TBX3 (Fragment) OS=Gallus gallus GN=TBX3 PE=2 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 96/113 (84%), Gaps = 6/113 (5%)

Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP
Sbjct: 131 GRRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 190

Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           DSP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 191 DSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

Transcriptional repressor involved in developmental processes. Probably plays a role in limb pattern formation.

Gallus gallus (taxid: 9031)

>sp|Q3SA48|TBX2_XENTR T-box transcription factor TBX2 OS=Xenopus tropicalis GN=tbx2 PE=2 SV=1

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 96/113 (84%), Gaps = 6/113 (5%)

Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP
Sbjct: 121 GRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 180

Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           DSP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 181 DSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 233

Xenopus tropicalis (taxid: 8364)

>sp|Q9IBC8|TBX2A_XENLA T-box transcription factor TBX2-A OS=Xenopus laevis GN=tbx2-a PE=2 SV=1

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 96/113 (84%), Gaps = 6/113 (5%)

Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP
Sbjct: 121 GRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 180

Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           DSP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 181 DSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 233

Xenopus laevis (taxid: 8355)

>sp|Q7ZTU9|TBX2_DANRE T-box transcription factor TBX2b OS=Danio rerio GN=tbx2b PE=2 SV=4

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 96/113 (84%), Gaps = 6/113 (5%)

Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFP +KVR+ GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP
Sbjct: 120 GRRMFPPFKVRINGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 179

Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           DSP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 180 DSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 232

Plays a role in the specification of late notochordal precursor cells and formation of the differentiated notochord.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
307202436	151	Optomotor-blind protein [Harpegnathos sa	0.668	0.841	0.913	1e-65
332025859	166	T-box transcription factor TBX3 [Acromyr	0.678	0.777	0.906	2e-65
307177071	216	T-box transcription factor TBX2 [Campono	0.842	0.740	0.600	2e-60
328714721	719	PREDICTED: hypothetical protein LOC10015	0.494	0.130	0.946	3e-48
259013374	744	T-box 2/3 [Saccoglossus kowalevskii] gi|	0.478	0.122	0.956	2e-47
395513913	784	PREDICTED: T-box transcription factor TB	0.557	0.135	0.776	3e-47
126324399	1011	PREDICTED: t-box transcription factor TB	0.557	0.104	0.776	3e-47
149634177	749	PREDICTED: T-box transcription factor TB	0.557	0.141	0.776	5e-47
403275340	766	PREDICTED: T-box transcription factor TB	0.557	0.138	0.776	6e-47
397486828	967	PREDICTED: LOW QUALITY PROTEIN: T-box tr	0.557	0.109	0.776	6e-47

>gi|307202436|gb|EFN81856.1| Optomotor-blind protein [Harpegnathos saltator]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/127 (91%), Positives = 125/127 (98%)

Query: 39  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLM 98
           MFPQMKFRVSGLDAKAKYILLLDIVA+DD+RYKFHNRRMFPAYKVRV GLDK+A YILLM
Sbjct: 1   MFPQMKFRVSGLDAKAKYILLLDIVAADDYRYKFHNRRMFPAYKVRVSGLDKQASYILLM 60

Query: 99  DIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNI 158
           D+VA+D+CRYKFH+SRWMVAGKADPEMPKRMYIHPDSPS+G+QWMQKVVSFHKLKLTNNI
Sbjct: 61  DVVASDECRYKFHSSRWMVAGKADPEMPKRMYIHPDSPSSGEQWMQKVVSFHKLKLTNNI 120

Query: 159 SDKHGFV 165
           SDKHGFV
Sbjct: 121 SDKHGFV 127

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025859|gb|EGI66015.1| T-box transcription factor TBX3 [Acromyrmex echinatior]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/129 (90%), Positives = 125/129 (96%)

Query: 39  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLM 98
           MFPQMKFRVSGLDAKAKYILLLDIVA+DD+RYKFHNRRMFPAYKVRV GLDK+A YILLM
Sbjct: 1   MFPQMKFRVSGLDAKAKYILLLDIVAADDYRYKFHNRRMFPAYKVRVFGLDKQASYILLM 60

Query: 99  DIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNI 158
           DIVA+D+CRYKFHNSRWMVAGKADPEMPKRMYIHPDSPS+G+QWMQKVVSFHKLKLTNNI
Sbjct: 61  DIVASDECRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSSGEQWMQKVVSFHKLKLTNNI 120

Query: 159 SDKHGFVMS 167
           SDKHGF  +
Sbjct: 121 SDKHGFCYA 129

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177071|gb|EFN66339.1| T-box transcription factor TBX2 [Camponotus floridanus]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/208 (60%), Positives = 138/208 (66%), Gaps = 48/208 (23%)

Query: 1   MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLL 60
           MFPQMKFRVSGLDAKAKYILLLDIVA+DD+RYKFHN   F         +    K + L+
Sbjct: 3   MFPQMKFRVSGLDAKAKYILLLDIVAADDYRYKFHNSDFF--------NIKLCEKVLTLV 54

Query: 61  DI---------VASDDFRY-------------------------------KFHNRRMFPA 80
           +I           S D  +                               K   RRMFPA
Sbjct: 55  EIFKIGCPPKSTVSKDTSFMHSSPCPWEHKRSSAVNDRTNVCCVCLFCDRKIVRRRMFPA 114

Query: 81  YKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGD 140
           YKVRV GLDK+A YILLMDIVA+D+CRYKFHNSRWMVAGKADPEMPKRMYIHPDSPS+G+
Sbjct: 115 YKVRVFGLDKQASYILLMDIVASDECRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSSGE 174

Query: 141 QWMQKVVSFHKLKLTNNISDKHGFVMSA 168
           QWMQKVVSFHKLKLTNNISDKHGFV + 
Sbjct: 175 QWMQKVVSFHKLKLTNNISDKHGFVSTV 202

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714721|ref|XP_001945683.2| PREDICTED: hypothetical protein LOC100158703 [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/94 (94%), Positives = 92/94 (97%)

Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP
Sbjct: 193 GRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 252

Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMS 167
           DSPSTG+QWMQKVVSFHKLKLTNNISDKHGF ++
Sbjct: 253 DSPSTGEQWMQKVVSFHKLKLTNNISDKHGFGLN 286

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|259013374|ref|NP_001158392.1| T-box 2/3 [Saccoglossus kowalevskii] gi|90659984|gb|ABD97269.1| tbx2/3 [Saccoglossus kowalevskii]

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/91 (95%), Positives = 89/91 (97%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP+YKVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 122 RRMFPSYKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 181

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFV 165
           SP TG+QWMQKVVSFHKLKLTNNISDKHGFV
Sbjct: 182 SPCTGEQWMQKVVSFHKLKLTNNISDKHGFV 212

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|395513913|ref|XP_003761166.1| PREDICTED: T-box transcription factor TBX3, partial [Sarcophilus harrisii]

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 233 RRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 292

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 293 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 344

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126324399|ref|XP_001377459.1| PREDICTED: t-box transcription factor TBX3-like [Monodelphis domestica]

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 406 RRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 465

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 466 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 517

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149634177|ref|XP_001510378.1| PREDICTED: T-box transcription factor TBX3 isoform 1 [Ornithorhynchus anatinus]

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 132 RRMFPPFKVRCSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 191

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 192 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403275340|ref|XP_003929408.1| PREDICTED: T-box transcription factor TBX2 [Saimiri boliviensis boliviensis]

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 185 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 244

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 245 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 296

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397486828|ref|XP_003845957.1| PREDICTED: LOW QUALITY PROTEIN: T-box transcription factor TBX2 [Pan paniscus]

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 6/112 (5%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 387 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 446

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 447 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 498

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
UNIPROTKB|F1PFJ4	716	TBX2 "T-box transcription fact	0.689	0.182	0.678	5.9e-44
UNIPROTKB|F1P3V7	413	TBX3 "T-box transcription fact	0.557	0.256	0.776	1.7e-43
UNIPROTKB|O73718	414	TBX3 "T-box transcription fact	0.557	0.256	0.776	1.7e-43
UNIPROTKB|J9PB78	591	TBX3 "Uncharacterized protein"	0.557	0.179	0.767	2.2e-43
UNIPROTKB|E1BY57	304	TBX2 "Uncharacterized protein"	0.557	0.348	0.776	2.8e-43
UNIPROTKB|E1BY66	261	TBX2 "Uncharacterized protein"	0.557	0.406	0.776	2.8e-43
UNIPROTKB|F1NKW7	158	TBX2 "Uncharacterized protein"	0.557	0.670	0.776	2.8e-43
RGD|1311014	651	Tbx2 "T-box 2" [Rattus norvegi	0.557	0.162	0.776	2.8e-43
ZFIN|ZDB-GENE-070209-80	689	tbx3a "T-box 3a" [Danio rerio	0.557	0.153	0.776	3.4e-43
UNIPROTKB|J9NV98	655	TBX2 "T-box transcription fact	0.557	0.161	0.776	3.8e-43

UNIPROTKB|F1PFJ4 TBX2 "T-box transcription factor TBX2" [Canis lupus familiaris (taxid:9615)]

 Score = 467 (169.5 bits), Expect = 5.9e-44, P = 5.9e-44
 Identities = 93/137 (67%), Positives = 104/137 (75%)

Query:    50 LDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYK 109
             LD+   +I  LDI            RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYK
Sbjct:   111 LDSARAWISFLDIGFHLSLLRSLSRRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYK 170

Query:   110 FHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSAS 169
             FHNSRWMVAGKADPEMPKRMYIHPDSP+TG+QWM K V+FHKLKLTNNISDKHGF +  S
Sbjct:   171 FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMGKPVAFHKLKLTNNISDKHGFTILNS 230

Query:   170 VDR------IAGSNDLL 180
             + +      I  +ND+L
Sbjct:   231 MHKYQPRFHIVRANDIL 247

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1P3V7 TBX3 "T-box transcription factor TBX3" [Gallus gallus (taxid:9031)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:   132 RRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 191

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   192 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O73718 TBX3 "T-box transcription factor TBX3" [Gallus gallus (taxid:9031)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:   132 RRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 191

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   192 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 243

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0007569 "cell aging" evidence=ISS

GO:0030539 "male genitalia development" evidence=ISS

GO:0030540 "female genitalia development" evidence=ISS

GO:0032275 "luteinizing hormone secretion" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0035115 "embryonic forelimb morphogenesis" evidence=ISS

GO:0042733 "embryonic digit morphogenesis" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0045662 "negative regulation of myoblast differentiation" evidence=ISS

GO:0045787 "positive regulation of cell cycle" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0008595 "anterior/posterior axis specification, embryo" evidence=ISS

GO:0046884 "follicle-stimulating hormone secretion" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0048332 "mesoderm morphogenesis" evidence=ISS

UNIPROTKB|J9PB78 TBX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:   130 RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 189

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   190 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 241

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E1BY57 TBX2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:   122 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 181

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   182 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 233

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003203 "endocardial cushion morphogenesis" evidence=IEA

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0007521 "muscle cell fate determination" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0036302 "atrioventricular canal development" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060465 "pharynx development" evidence=IEA

GO:0060560 "developmental growth involved in morphogenesis" evidence=IEA

GO:0060596 "mammary placode formation" evidence=IEA

GO:1901208 "negative regulation of heart looping" evidence=IEA

GO:1901211 "negative regulation of cardiac chamber formation" evidence=IEA

UNIPROTKB|E1BY66 TBX2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:   122 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 181

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   182 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 233

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003203 "endocardial cushion morphogenesis" evidence=IEA

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0007521 "muscle cell fate determination" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0036302 "atrioventricular canal development" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060465 "pharynx development" evidence=IEA

GO:0060560 "developmental growth involved in morphogenesis" evidence=IEA

GO:0060596 "mammary placode formation" evidence=IEA

GO:1901208 "negative regulation of heart looping" evidence=IEA

GO:1901211 "negative regulation of cardiac chamber formation" evidence=IEA

UNIPROTKB|F1NKW7 TBX2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:    19 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 78

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:    79 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 130

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003203 "endocardial cushion morphogenesis" evidence=IEA

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0007521 "muscle cell fate determination" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0036302 "atrioventricular canal development" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060465 "pharynx development" evidence=IEA

GO:0060560 "developmental growth involved in morphogenesis" evidence=IEA

GO:0060596 "mammary placode formation" evidence=IEA

GO:1901208 "negative regulation of heart looping" evidence=IEA

GO:1901211 "negative regulation of cardiac chamber formation" evidence=IEA

RGD|1311014 Tbx2 "T-box 2" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:    72 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 131

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   132 SPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 183

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=ISO

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003203 "endocardial cushion morphogenesis" evidence=ISO

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005667 "transcription factor complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007521 "muscle cell fate determination" evidence=ISO

GO:0007569 "cell aging" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=ISO

GO:0036302 "atrioventricular canal development" evidence=ISO

GO:0042733 "embryonic digit morphogenesis" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=ISO

GO:0048738 "cardiac muscle tissue development" evidence=ISO

GO:0060021 "palate development" evidence=ISO

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISO

GO:0060465 "pharynx development" evidence=ISO

GO:0060560 "developmental growth involved in morphogenesis" evidence=ISO

GO:0060596 "mammary placode formation" evidence=ISO

GO:0090398 "cellular senescence" evidence=ISO

GO:1901208 "negative regulation of heart looping" evidence=ISO

GO:1901211 "negative regulation of cardiac chamber formation" evidence=ISO

ZFIN|ZDB-GENE-070209-80 tbx3a "T-box 3a" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 3.4e-43, P = 3.4e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVR  GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:   125 RRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 184

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   185 SPATGEQWMSKVVNFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 236

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0035050 "embryonic heart tube development" evidence=IMP

UNIPROTKB|J9NV98 TBX2 "T-box transcription factor TBX2" [Canis lupus familiaris (taxid:9615)]

 Score = 456 (165.6 bits), Expect = 3.8e-43, P = 3.8e-43
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query:    75 RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
             RRMFP +KVRV GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct:    74 RRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 133

Query:   135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
             SP+TG+QWM K V+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct:   134 SPATGEQWMGKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 185

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P70324	TBX3_MOUSE	No assigned EC number	0.8453	0.5105	0.1309	yes	N/A
Q863A2	TBX2_CANFA	No assigned EC number	0.7767	0.5578	0.1488	yes	N/A
O15119	TBX3_HUMAN	No assigned EC number	0.8453	0.5105	0.1305	yes	N/A
Q7TST9	TBX3_RAT	No assigned EC number	0.8453	0.5105	0.1305	yes	N/A
Q24432	OMB_DROME	No assigned EC number	0.8901	0.4789	0.0936	yes	N/A
Q19691	TBX2_CAEEL	No assigned EC number	0.6666	0.5210	0.2340	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
pfam00907	182	pfam00907, T-box, T-box	4e-56
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	6e-54
smart00425	190	smart00425, TBOX, Domain first found in the mice T	8e-49
pfam00907	182	pfam00907, T-box, T-box	1e-13
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	6e-12
smart00425	190	smart00425, TBOX, Domain first found in the mice T	2e-11

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score =  175 bits (445), Expect = 4e-56
 Identities = 58/107 (54%), Positives = 70/107 (65%), Gaps = 11/107 (10%)

Query: 71  KFHN-----------RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAG 119
           KFH            RRMFP  KV V GLD  A Y +L+D V  DD RYKFHN  W+VAG
Sbjct: 12  KFHELGTEMIITKSGRRMFPTLKVSVSGLDPNALYSVLLDFVPVDDHRYKFHNGEWVVAG 71

Query: 120 KADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVM 166
           KA+P  P R+YIHPDSP+TG  WM++ VSF K+KLTNN  D +G ++
Sbjct: 72  KAEPHPPPRVYIHPDSPATGAHWMKQPVSFDKVKLTNNKLDGNGHII 118

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score =  169 bits (431), Expect = 6e-54
 Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 11/107 (10%)

Query: 71  KFHN-----------RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAG 119
           KFH            RRMFP  KV+V GLD  A Y +LMD+V  DD RYKF   +W+VAG
Sbjct: 14  KFHELGTEMIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAG 73

Query: 120 KADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVM 166
           KA+P +P R+Y+HPDSP+TG  WM++ VSF KLKLTNN  D +G ++
Sbjct: 74  KAEPHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHII 120

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score =  156 bits (397), Expect = 8e-49
 Identities = 56/91 (61%), Positives = 71/91 (78%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP  K +V GLD  A Y +LMD+V  DD RYKF+N +W+VAGKA+P MP R+Y+HPD
Sbjct: 28  RRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPHMPSRVYVHPD 87

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFV 165
           SP+TG  WM++ VSF K+KLTNN SDK+G +
Sbjct: 88  SPATGAHWMKQPVSFDKVKLTNNQSDKNGHL 118

Length = 190

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 23/36 (63%), Positives = 25/36 (69%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHN 36
          MFP +K  VSGLD  A Y +LLD V  DD RYKFHN
Sbjct: 29 MFPTLKVSVSGLDPNALYSVLLDFVPVDDHRYKFHN 64

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP +K +VSGLD  A Y +L+D+V  DD RYKF   +
Sbjct: 31 MFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGK 68

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP +K++VSGLD  A Y +L+D+V  DD RYKF+N +
Sbjct: 30 MFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGK 67

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	100.0
KOG3586|consensus	437		100.0
KOG3585|consensus	328		100.0
KOG3586|consensus	437		100.0
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	100.0
cd00182	188	TBOX T-box DNA binding domain of the T-box family	99.96
smart00425	190	TBOX Domain first found in the mice T locus (Brach	99.96
KOG3585|consensus	328		99.95
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	99.86

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=5.7e-40  Score=261.79  Aligned_cols=137  Identities=43%  Similarity=0.752  Sum_probs=124.7

Q ss_pred             eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661         44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD  122 (190)
Q Consensus        44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e  122 (190)
                      ++++.+.+-|.+++.. .+      +...+.||||||.+++.++||||++.|++.|+|+++|++||+|.+|+|.++|++|
T Consensus         3 ~v~L~~~~lW~~f~~~~tE------MIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e   76 (188)
T cd00182           3 KVSLENRELWKKFHELGTE------MIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAE   76 (188)
T ss_pred             EEEEcCHHHHHhhcccCcE------EEEecCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCC
Confidence            5666677778777752 33      3346789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCCcc
Q psy16661        123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTST  186 (190)
Q Consensus       123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~~~  186 (190)
                      +..+.++|+|||||++|++||+++|+|.+||||||..++.++|+|+|||||+|++.|.+....+
T Consensus        77 ~~~~~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~  140 (188)
T cd00182          77 PHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSS  140 (188)
T ss_pred             CCCCCceEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCc
Confidence            9999999999999999999999999999999999998888999999999999999999977643

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=100.00  E-value=2.9e-39  Score=258.53  Aligned_cols=137  Identities=44%  Similarity=0.762  Sum_probs=124.6

Q ss_pred             eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661         44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD  122 (190)
Q Consensus        44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e  122 (190)
                      ++++.+.+-|.+++.+ .++.      ..+.||||||.|+++++||||++.|.+.|+|+++|++||+|++|+|.++|++|
T Consensus         2 ~v~L~~~~lW~~f~~~~tEMI------VTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e   75 (190)
T smart00425        2 KVSLEDKELWRKFHELGTEMI------VTKSGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAE   75 (190)
T ss_pred             EEEEcCHHHHHhhCccCcEEE------EecCCceeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCC
Confidence            4566677778888765 4444      36789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcE--EcccccccccCCCcccCCCcc
Q psy16661        123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFV--MSASVDRIAGSNDLLLDKTST  186 (190)
Q Consensus       123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i--~l~smhky~pv~~i~~~p~~~  186 (190)
                      +..+.++|+|||+|++|++||+++|+|.+||||||..+++|+|  +|+|||||+|++.|.+...++
T Consensus        76 ~~~~~~~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~  141 (190)
T smart00425       76 PHMPSRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDIS  141 (190)
T ss_pred             CCCCCceEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcc
Confidence            9999999999999999999999999999999999999998886  999999999999999877654

>KOG3586|consensus

Probab=100.00  E-value=9.4e-38  Score=266.40  Aligned_cols=136  Identities=40%  Similarity=0.738  Sum_probs=120.2

Q ss_pred             eeeEeeCccccceEEEeeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceee--eeCCeeeEecc
Q psy16661         43 MKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYK--FHNSRWMVAGK  120 (190)
Q Consensus        43 ~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~--~~~~~w~~~g~  120 (190)
                      ..+.+.++.-|.++|=+.     -++..++.||||||++++.++||||.+.|.++||||++|++|||  |++.+|.++|+
T Consensus        80 i~~~Le~keLWdrFh~lG-----TEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGk  154 (437)
T KOG3586|consen   80 IQVQLETKELWDRFHDLG-----TEMIITKSGRRMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGK  154 (437)
T ss_pred             eEEEeehHHHHHHHHhcC-----ceEEEecccccccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecC
Confidence            344555666677766332     14566899999999999999999999999999999999999888  58999999999


Q ss_pred             CCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCC
Q psy16661        121 ADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDK  183 (190)
Q Consensus       121 ~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p  183 (190)
                      +|+..+.|+|+|||+|++|++||++.|+|+|||||||..+++|+|+|||||||.|-.-|..+.
T Consensus       155 ADp~~p~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~  217 (437)
T KOG3586|consen  155 ADPAPPPRVYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLD  217 (437)
T ss_pred             CCCCCCCceeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEec
Confidence            999999999999999999999999999999999999999999999999999999976666554

>KOG3585|consensus

Probab=100.00  E-value=7.5e-37  Score=262.77  Aligned_cols=136  Identities=38%  Similarity=0.671  Sum_probs=123.0

Q ss_pred             eeeEeeCccccceEEEeeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661         43 MKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD  122 (190)
Q Consensus        43 ~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e  122 (190)
                      .++++...+-|+++|-+..+-     ...+.||||||.++|+|+||||+++|+|.|+|+++|++||+|.+|+|+++|++|
T Consensus        25 ~~v~l~~~eLW~~fh~~~~Em-----iitK~GRrmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e   99 (328)
T KOG3585|consen   25 VKVSLENRELWKKFHEHGTEM-----IVTKRGRRMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAE   99 (328)
T ss_pred             cEEEEechhHHHhhccCccEE-----EEecCCceeccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCC
Confidence            455555556677777554322     237899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCc-EEcccccccccCCCcccCC
Q psy16661        123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGF-VMSASVDRIAGSNDLLLDK  183 (190)
Q Consensus       123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~-i~l~smhky~pv~~i~~~p  183 (190)
                      +..+.++|+|||+++||++||+.+|+|++||||||..+++++ |+|+|||||+|++.|.+..
T Consensus       100 ~~~~~~~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~  161 (328)
T KOG3585|consen  100 PHVPSKVYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELD  161 (328)
T ss_pred             CCCCceEEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeEEEEEcc
Confidence            988999999999999999999999999999999999999998 9999999999999999986

>KOG3586|consensus

Probab=100.00  E-value=7e-35  Score=248.86  Aligned_cols=146  Identities=25%  Similarity=0.345  Sum_probs=122.8

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCccee--cccCccceeeeeEeeCccccceEEEeeeecccCcccccccccccc
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYK--FHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMF   78 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r--~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~f   78 (190)
                      |||+++|+++||||.++|.|+|||||+|++|||  ||++.|+.+||++.   .+++|+|+|+|++..++.  ||++-++|
T Consensus       109 MFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGkADp---~~p~R~yvHPDSP~sGe~--wmkqiVSF  183 (437)
T KOG3586|consen  109 MFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGKADP---APPPRVYVHPDSPASGEQ--WMKQIVSF  183 (437)
T ss_pred             ccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecCCCC---CCCCceeeCCCCCCCHHH--HHHhhhch
Confidence            999999999999999999999999999999998  89999997777653   256899999999997655  89999999


Q ss_pred             ceeeEEEeCCCCCCceEEE--------EEEEEcCCceeeeeCCeeeEecc-CCCCCCcceeecCCCCCchhHhhcCccee
Q psy16661         79 PAYKVRVMGLDKKAKYILL--------MDIVAADDCRYKFHNSRWMVAGK-ADPEMPKRMYIHPDSPSTGDQWMQKVVSF  149 (190)
Q Consensus        79 P~lk~~i~GLdp~~~Y~~~--------l~~~~~d~~ry~~~~~~w~~~g~-~e~~~~~~~~~hp~s~~tG~~wm~~~v~F  149 (190)
                      .++|+|+|.||.+++.+|.        +|+++.|..       +  ...+ .+..+..++|+|||+.||++|+||| ..|
T Consensus       184 dK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~-------~--~s~~~~~~~e~~kTF~FpET~FtAVTAYQN-q~I  253 (437)
T KOG3586|consen  184 DKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPG-------N--DSNKYVEKNEGFKTFVFPETVFTAVTAYQN-QRI  253 (437)
T ss_pred             heeeccccccccCCcEeeecccccCCceEEEEecCC-------C--CccccccccccceeEeccceeEEEEeeccc-cee
Confidence            9999999999999987765        444444432       1  1111 2222346899999999999999999 999


Q ss_pred             eEEEeecCCCCC
Q psy16661        150 HKLKLTNNISDK  161 (190)
Q Consensus       150 ~klKItnn~~~k  161 (190)
                      +||||..|+|||
T Consensus       254 TkLKI~sNPFAK  265 (437)
T KOG3586|consen  254 TKLKIESNPFAK  265 (437)
T ss_pred             eeeeeccCcccc
Confidence            999999999998

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=100.00  E-value=1.3e-34  Score=231.25  Aligned_cols=136  Identities=35%  Similarity=0.608  Sum_probs=101.6

Q ss_pred             eEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCCC
Q psy16661         45 FRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADP  123 (190)
Q Consensus        45 ~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~  123 (190)
                      +++...+-|.+++-+ .++      .....||++||.|+|+|+||||++.|+|.|+|+++|++||+|.+|+|.+++++++
T Consensus         2 V~L~~~~lW~~f~~~~~EM------ivt~~GR~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~   75 (184)
T PF00907_consen    2 VSLENEELWKKFHELGNEM------IVTKNGRRMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEP   75 (184)
T ss_dssp             EEETTHHHHHHHHHH--EE------E-BTT-EE-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---
T ss_pred             eECccHHHHHHhccCCCEE------EEeecccccccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccccc
Confidence            455555666666532 333      3467899999999999999999999999999999999999999999999999998


Q ss_pred             CCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCCcc
Q psy16661        124 EMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTST  186 (190)
Q Consensus       124 ~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~~~  186 (190)
                      ..+.+.+.||+++++|+.||+++|+|+++||||+..++++.|+|+|||||+||++|.+.+...
T Consensus        76 ~~~~~~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~  138 (184)
T PF00907_consen   76 PMPPRVVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNG  138 (184)
T ss_dssp             B-----EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTS
T ss_pred             cccceEEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCcc
Confidence            888899999999999999999999999999999998887889999999999999999988763

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=99.96  E-value=2.2e-30  Score=206.66  Aligned_cols=144  Identities=29%  Similarity=0.359  Sum_probs=120.7

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||+++|.++|||+++|++||||++++|.++++++..   +..+.++|+|++..  +.+||.+...|.+
T Consensus        31 mFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e~~---~~~~~~~HPdsp~t--G~~wM~~~isF~k  105 (188)
T cd00182          31 MFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPH---LPPRVYVHPDSPAT--GAHWMKQPVSFDK  105 (188)
T ss_pred             cccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCCCC---CCCceEECCCCCcC--HHHHhhCccccch
Confidence            899999999999999999999999999999999999999999887632   45688999999985  5668999999999


Q ss_pred             eeEEEeCCCCC--------CceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661         81 YKVRVMGLDKK--------AKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL  152 (190)
Q Consensus        81 lk~~i~GLdp~--------~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl  152 (190)
                      +|++++.++.+        .+|+..|||+++++.-    ..         .....+.|.+|++.|+++++||| ..+++|
T Consensus       106 vKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~----~~---------~~~~~~~f~F~eT~FiAVTaYqN-~~It~l  171 (188)
T cd00182         106 LKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSS----PF---------SWRLVQTFSFPETEFIAVTAYQN-QEITQL  171 (188)
T ss_pred             hhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCc----cc---------cccccEEEECCCeEEEEEEeecC-HhHhhh
Confidence            99999985554        4566666666665420    00         12345789999999999999999 899999


Q ss_pred             EeecCCCCCCCc
Q psy16661        153 KLTNNISDKHGF  164 (190)
Q Consensus       153 KItnn~~~k~~~  164 (190)
                      ||.|||||| ||
T Consensus       172 Ki~~NpfAk-gf  182 (188)
T cd00182         172 KIDNNPFAK-GF  182 (188)
T ss_pred             hhcCCcccc-cc
Confidence            999999998 54

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=99.96  E-value=5.4e-29  Score=199.31  Aligned_cols=151  Identities=25%  Similarity=0.314  Sum_probs=117.0

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||.++|.++|||+++|++||||++++|.++++++..   +..+.++|+|++..  +..||.+...|.+
T Consensus        30 mFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e~~---~~~~~~~Hpdsp~t--G~~wM~~~v~F~k  104 (190)
T smart00425       30 MFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPH---MPSRVYVHPDSPAT--GAHWMKQPVSFDK  104 (190)
T ss_pred             eCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCCCC---CCCceEECCCCccC--HHHHhhCcccccc
Confidence            899999999999999999999999999999999999999999887632   23678999999985  5668999999999


Q ss_pred             eeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEec-cCCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCC
Q psy16661         81 YKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAG-KADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNIS  159 (190)
Q Consensus        81 lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g-~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~  159 (190)
                      +|++++.++.+++.++.|+    +.|||...----.... ........+.|.+|++.|+++++||| ..+++|||.+||+
T Consensus       105 vKlTN~~~~~~~~i~i~L~----SmhkY~P~l~I~~~~~~~~~~~~~~~~f~F~eT~FiaVTaYqN-~~it~lKi~~Npf  179 (190)
T smart00425      105 VKLTNNQSDKNGHLQIILN----SMHKYQPRLHIVEVDDISKEILSQFKTFVFPETQFIAVTAYQN-QKITKLKIDNNPF  179 (190)
T ss_pred             cceeccccccCCcEeeeec----cCceEeeEEEEEEeCCcccccccceeEEECCceEEEEEeeecc-cchhhccccCCCC
Confidence            9999987666655321221    3444442100000000 00011234689999999999999999 8999999999999


Q ss_pred             CC
Q psy16661        160 DK  161 (190)
Q Consensus       160 ~k  161 (190)
                      ||
T Consensus       180 Ak  181 (190)
T smart00425      180 AK  181 (190)
T ss_pred             cC
Confidence            98

>KOG3585|consensus

Probab=99.95  E-value=2.2e-28  Score=210.41  Aligned_cols=142  Identities=32%  Similarity=0.434  Sum_probs=125.4

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||++.|+|+|||+++|++||+|+||+|.|++|++.   ....++++|+|++.+|  .+||.+.+.|.+
T Consensus        54 mFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e~---~~~~~~~~Hpd~p~TG--~~WM~~~V~F~k  128 (328)
T KOG3585|consen   54 MFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAEP---HVPSKVYVHPDGPATG--AHWMSEPVSFDK  128 (328)
T ss_pred             eccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCCC---CCCceEEEecCCccch--HHHhcCCcccce
Confidence            89999999999999999999999999999999999999999999885   5568999999999964  558999999999


Q ss_pred             eeEEEeCCCCCCc---------eEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeE
Q psy16661         81 YKVRVMGLDKKAK---------YILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHK  151 (190)
Q Consensus        81 lk~~i~GLdp~~~---------Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~k  151 (190)
                      ||+|++.+|.++.         |+..|||+++++.             ...+....+.+.+++++|+++++||| .++++
T Consensus       129 vKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~-------------~~~~~~~~~~~~F~eT~FIaVTaYQn-~~it~  194 (328)
T KOG3585|consen  129 VKITNNKSDKKGKVIILNSMHKYQPVLHIVELDAS-------------LISPEISVQSFKFPETQFIAVTAYQN-QEITK  194 (328)
T ss_pred             eEeeccccccCCceEeeecccceeeeEEEEEcccc-------------cCCCccceeEEEcccceeEEeeeeec-ceehh
Confidence            9999999999999         6666777766621             11222346799999999999999999 89999


Q ss_pred             EEeecCCCCC
Q psy16661        152 LKLTNNISDK  161 (190)
Q Consensus       152 lKItnn~~~k  161 (190)
                      |||.||++++
T Consensus       195 lKi~~Npfak  204 (328)
T KOG3585|consen  195 LKIDNNPFAK  204 (328)
T ss_pred             hcccCCcccc
Confidence            9999999998

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=99.86  E-value=9.5e-23  Score=162.74  Aligned_cols=143  Identities=25%  Similarity=0.334  Sum_probs=99.2

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||.+.|.+.|+++++|++||+|.+++|.++++.+...   ..+...|++++.  .+..||.+...|..
T Consensus        29 ~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~~~---~~~~~~h~~~~~--~G~~WM~~~v~F~~  103 (184)
T PF00907_consen   29 MFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEPPM---PPRVVIHPDGPQ--TGSEWMKNGVSFDK  103 (184)
T ss_dssp             -SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---B--------EE-TT-SE--EHHHHHHS-EEETT
T ss_pred             cccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccccccc---cceEEEEecCcC--CHHHhCcccEEeeh
Confidence            7999999999999999999999999999999999999999988766432   255667787776  46779999999999


Q ss_pred             eeEEEeCCCCCCc--------eEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661         81 YKVRVMGLDKKAK--------YILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL  152 (190)
Q Consensus        81 lk~~i~GLdp~~~--------Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl  152 (190)
                      ++++++..+.++.        |+..|+|..+++..            ..........+.+|++.|++++.|+| ..+.+|
T Consensus       104 vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~------------~~~~~~~~~~f~f~~t~FIaVT~Yqn-~~I~~l  170 (184)
T PF00907_consen  104 VKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNG------------SPSPNQPVHEFSFPETEFIAVTAYQN-EEIRQL  170 (184)
T ss_dssp             -EEESSTT-TST-EE--TTEEEEEEEEEEECTTTS------------CCCSCSSEEEEE-GGG-EEEESS-SS-HHHHHH
T ss_pred             hhhhCCCCCcccceEEccccEEEEEEEEEEcCCcc------------ccccccceEEeecCcCeEEeecccch-hhhhhh
Confidence            9999988554443        44444444443320            00012345789999999999999999 899999


Q ss_pred             EeecCCCCC
Q psy16661        153 KLTNNISDK  161 (190)
Q Consensus       153 KItnn~~~k  161 (190)
                      ||.+|++|+
T Consensus       171 K~~~Npfak  179 (184)
T PF00907_consen  171 KIDNNPFAK  179 (184)
T ss_dssp             HHHH-GGGG
T ss_pred             hhccCCCcc
Confidence            999999998

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1h6f_A	193	Human Tbx3, A Transcription Factor Responsible For		2e-47
2x6u_A	203	Crystal Structure Of Human Tbx5 In The Dna-Free For		3e-32
4a04_A	203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		2e-28
1xbr_A	184	T Domain From Xenopus Laevis Bound To Dna Length =		8e-22

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Iteration: 1
 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 96/113 (84%), Gaps = 6/113 (5%)
Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHP
Sbjct: 31  GRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 90
Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR------IAGSNDLL 180
           DSP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+ +      I  +ND+L
Sbjct: 91  DSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL 143

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHP 133
            RRMFP+YKV+V GL+ K KYILLMDIV ADD RYKF +++W V GKA+P MP R+Y+HP
Sbjct: 32  GRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHP 91
Query: 134 DSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR 172
           DSP+TG  WM+++VSF KLKLTNN  D  G ++  S+ +
Sbjct: 92  DSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHK 130

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 75/101 (74%), Gaps = 2/101 (1%)
Query: 74  NRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYK--FHNSRWMVAGKADPEMPKRMYI 131
            RRMFP ++V++ G+D  A Y+LLMD V  DD RY+  FH+S W+VAGKADP  P R++ 
Sbjct: 42  GRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHY 101
Query: 132 HPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR 172
           HPDSP+ G QWM+++VSF KLKLTNN+ D +G ++  S+ R
Sbjct: 102 HPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHR 142

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Query: 73  HNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 132
           + RRMFP  KV + GLD  A Y +L+D VAAD+ R+K+ N  W+  GK +P+ P  +YIH
Sbjct: 27  NGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIH 86
Query: 133 PDSPSTGDQWMQKVVSFHKLKLTNNISDK--------HGFVMSASVDRIAGSNDLL 180
           PDSP+ G  WM+  VSF K+KLTN ++          H +     + R+ G+  ++
Sbjct: 87  PDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMI 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2x6u_A	203	T-box transcription factor TBX5; developmental pro	3e-35
2x6u_A	203	T-box transcription factor TBX5; developmental pro	2e-08
1xbr_A	184	Protein (T protein); complex (transcription factor	5e-32
1xbr_A	184	Protein (T protein); complex (transcription factor	4e-08
1h6f_A	193	T-box transcription factor TBX3; transcription fac	2e-31
1h6f_A	193	T-box transcription factor TBX3; transcription fac	4e-07
4a04_A	203	T-box transcription factor TBX1; transcription, T-	4e-30
4a04_A	203	T-box transcription factor TBX1; transcription, T-	6e-07

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score =  121 bits (305), Expect = 3e-35
 Identities = 60/100 (60%), Positives = 77/100 (77%)

Query: 73  HNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 132
             RRMFP+YKV+V GL+ K KYILLMDIV ADD RYKF +++W V GKA+P MP R+Y+H
Sbjct: 31  AGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVH 90

Query: 133 PDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDR 172
           PDSP+TG  WM+++VSF KLKLTNN  D  G ++  S+ +
Sbjct: 91  PDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHK 130

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 22/38 (57%), Positives = 29/38 (76%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP  K +V+GL+ K KYILL+DIV +DD RYKF + +
Sbjct: 35 MFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNK 72

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score =  112 bits (282), Expect = 5e-32
 Identities = 44/95 (46%), Positives = 63/95 (66%)

Query: 73  HNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 132
           + RRMFP  KV + GLD  A Y +L+D VAAD+ R+K+ N  W+  GK +P+ P  +YIH
Sbjct: 27  NGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIH 86

Query: 133 PDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMS 167
           PDSP+ G  WM+  VSF K+KLTN ++     +++
Sbjct: 87  PDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLN 121

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP +K  +SGLD  A Y +LLD VA+D+ R+K+ N +
Sbjct: 31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGE 68

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score =  111 bits (279), Expect = 2e-31
 Identities = 82/97 (84%), Positives = 88/97 (90%)

Query: 73  HNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 132
             RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIH
Sbjct: 30  SGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 89

Query: 133 PDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSAS 169
           PDSP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S
Sbjct: 90  PDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNS 126

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 47.1 bits (111), Expect = 4e-07
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP  K R SGLD KAKYILL+DI+A+DD RYKFHN +
Sbjct: 34 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSR 71

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score =  108 bits (271), Expect = 4e-30
 Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 73  HNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYK--FHNSRWMVAGKADPEMPKRMY 130
             RRMFP ++V++ G+D  A Y+LLMD V  DD RY+  FH+S W+VAGKADP  P R++
Sbjct: 41  AGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVH 100

Query: 131 IHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVM 166
            HPDSP+ G QWM+++VSF KLKLTNN+ D +G ++
Sbjct: 101 YHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHII 136

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 46.8 bits (110), Expect = 6e-07
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP  + ++ G+D  A Y+LL+D V  DD RY++    
Sbjct: 45 MFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHS 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0
2x6u_A	203	T-box transcription factor TBX5; developmental pro	99.97
1h6f_A	193	T-box transcription factor TBX3; transcription fac	99.96
1xbr_A	184	Protein (T protein); complex (transcription factor	99.96
4a04_A	203	T-box transcription factor TBX1; transcription, T-	99.96

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=3.6e-41  Score=269.15  Aligned_cols=136  Identities=61%  Similarity=1.001  Sum_probs=123.8

Q ss_pred             eeeeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEecc
Q psy16661         42 QMKFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGK  120 (190)
Q Consensus        42 ~~k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~  120 (190)
                      ..++++...+-|.+++-+ .++      ...+.||+|||.++++++||||++.|++.|+|+++|++||+|++|+|.++|+
T Consensus         4 ~i~V~L~~~~LW~~F~~~~tEM------IiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~gk   77 (193)
T 1h6f_A            4 DPKVHLEAKELWDQFHKRGTEM------VITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGK   77 (193)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEE------ECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEECCHHHHHhhCcccceE------EEecCCcccCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEECcc
Confidence            456677777778777753 343      3467999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCC
Q psy16661        121 ADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDK  183 (190)
Q Consensus       121 ~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p  183 (190)
                      +|++.+.++|+|||||++|++||+++|+|++||||||..+++|+|+|+|||||+|++.|.+..
T Consensus        78 ae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~  140 (193)
T 1h6f_A           78 ADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAN  140 (193)
T ss_dssp             CCCCCCCCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCS
T ss_pred             cCCCCCcceEecCCCcccHHHHhhCCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcC
Confidence            999999999999999999999999999999999999999998999999999999999988754

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=5.4e-41  Score=269.87  Aligned_cols=136  Identities=46%  Similarity=0.796  Sum_probs=120.9

Q ss_pred             eeeeEeeCccccceEEE-eeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEecc
Q psy16661         42 QMKFRVSGLDAKAKYIL-LLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGK  120 (190)
Q Consensus        42 ~~k~~vsG~dp~ak~~~-~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~  120 (190)
                      ..++++...+-|.+++- ..++.      ..+.||+|||.++++++||||++.|+|.|+|+++|++||+|++|+|.++|+
T Consensus         5 ~i~V~L~~~~LW~~F~~~~tEMI------iTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~gk   78 (203)
T 2x6u_A            5 GIKVFLHERELWLKFHEVGTEMI------ITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGK   78 (203)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEEE------CBSSCEECSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEECCHHHHHhcCcCCceEE------EecCCcccCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEeECcc
Confidence            35667777777777773 23444      468999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCC
Q psy16661        121 ADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDK  183 (190)
Q Consensus       121 ~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p  183 (190)
                      +|+..+.++|+|||||++|++||+++|+|++||||||..++.|+|+|+|||||+|++.|.+..
T Consensus        79 ae~~~p~r~y~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~  141 (203)
T 2x6u_A           79 AEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKAD  141 (203)
T ss_dssp             CCCC---CCEECTTCSEEHHHHHHSCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECC
T ss_pred             cCCCCCcceEECCCCccchHHHhhCCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeC
Confidence            999999999999999999999999999999999999999988999999999999999999864

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=3e-40  Score=261.85  Aligned_cols=134  Identities=37%  Similarity=0.666  Sum_probs=119.9

Q ss_pred             eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661         44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD  122 (190)
Q Consensus        44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e  122 (190)
                      ++++...+-|.+++-+ .++.      ..+.||+|||.++++++||||++.|++.|+|+++|++||+|++|+|+++|++|
T Consensus         3 ~V~L~~~~LW~~F~~~~tEMI------iTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae   76 (184)
T 1xbr_A            3 KVSLEERDLWTRFKELTNEMI------VTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPE   76 (184)
T ss_dssp             EEEETTHHHHHHHHHHCCEEE------CBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCC
T ss_pred             EEEEcCHHHHHhhcccCcEEE------EecCCcccCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccC
Confidence            4566666677777743 2333      46889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCC
Q psy16661        123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKT  184 (190)
Q Consensus       123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~  184 (190)
                      +..+.++|+|||||++|++||+++|+|++||||||.. +.|+|+|+|||||+|++.|.+...
T Consensus        77 ~~~p~r~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~~-~~~~i~L~SmHKY~PrlhI~~~~~  137 (184)
T 1xbr_A           77 PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMN-GGGQIMLNSLHKYEPRIHIVRVGG  137 (184)
T ss_dssp             CCCCCCCEECTTCSEEHHHHHHSCEECTTCEEESSCC-TTTCEECCSSSEEEEEEEEEEESS
T ss_pred             CCCCcceEECCCCchhHHHHhhCCceeccccccccCC-CCCeEEeccCceEEEEEEEEEeCC
Confidence            9999999999999999999999999999999999964 458999999999999999988653

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=8.9e-40  Score=262.92  Aligned_cols=137  Identities=40%  Similarity=0.734  Sum_probs=123.3

Q ss_pred             eeeeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeee--eCCeeeEe
Q psy16661         42 QMKFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKF--HNSRWMVA  118 (190)
Q Consensus        42 ~~k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~--~~~~w~~~  118 (190)
                      ..++++...+-|.+++-+ .+      +..++.||||||.|+++|+||||++.|+|.|+|+++|++||+|  ++|+|.++
T Consensus        15 ~i~V~Le~~~LW~~Fh~~~tE------MIITK~GRrmFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~   88 (203)
T 4a04_A           15 GVSVQLEMKALWDEFNQLGTE------MIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVA   88 (203)
T ss_dssp             CCEEEETTHHHHHHHHHHCCE------EECCSSCEECSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEE
T ss_pred             CcEEEeCCHHHHHhhCcCCCe------EEEEeCCcccCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeEC
Confidence            456666666778777743 33      4447899999999999999999999999999999999999987  69999999


Q ss_pred             ccCCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCC
Q psy16661        119 GKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKT  184 (190)
Q Consensus       119 g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~  184 (190)
                      |++|+..+.++|+|||||++|++||+++|+|++||||||..+++|+|+|+|||||+|++.|.+...
T Consensus        89 gkae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~  154 (203)
T 4a04_A           89 GKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDP  154 (203)
T ss_dssp             EECCCCCCCCCCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCC
T ss_pred             CccCCCCCCceEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999999987653

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=99.97  E-value=3.8e-32  Score=218.39  Aligned_cols=146  Identities=31%  Similarity=0.389  Sum_probs=116.6

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||.++|+++|||+|+|++||||++++|.++++++..   .+.+.++|+|++..  +.+||.+.+.|.+
T Consensus        35 mFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~gkae~~---~p~r~y~Hpdsp~t--G~~WM~~~VsF~k  109 (203)
T 2x6u_A           35 MFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPA---MPGRLYVHPDSPAT--GAHWMRQLVSFQK  109 (203)
T ss_dssp             CSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC------CCEECTTCSEE--HHHHHHSCEECTT
T ss_pred             cCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEeECcccCCC---CCcceEECCCCccc--hHHHhhCCceeee
Confidence            899999999999999999999999999999999999999999988743   23588999999985  5668999999999


Q ss_pred             eeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661         81 YKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL  152 (190)
Q Consensus        81 lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl  152 (190)
                      +|+|++.+|..+        +|+..|||+++|+..      .   .+  ......+.|.+|++.|+++++||| ..+++|
T Consensus       110 lKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~------~---~~--~~~~~~~tf~FpeT~FiAVTaYQN-~~It~L  177 (203)
T 2x6u_A          110 LKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENN------G---FG--SKNTAFCTHVFPETAFIAVTSYQN-HKITQL  177 (203)
T ss_dssp             CEEECCTTCSSCCEECCTTEEEEEEEEEEECCTTS------C---SS--SSCCCEEEECCGGGCEEEESSCCS-HHHHHH
T ss_pred             eeceeccCCccceEeecCCceEEEEEEEEEeCCcc------c---cC--cCccceEEEEcCCcEEEEEeeecc-hhhhhh
Confidence            999999877664        577777777776531      0   00  112235689999999999999999 899999


Q ss_pred             EeecCCCCCCCc
Q psy16661        153 KLTNNISDKHGF  164 (190)
Q Consensus       153 KItnn~~~k~~~  164 (190)
                      ||.|||||| ||
T Consensus       178 Ki~~NPFAk-gF  188 (203)
T 2x6u_A          178 KIENNPFAK-GF  188 (203)
T ss_dssp             HHHHC-------
T ss_pred             hhccCCCcc-cc
Confidence            999999998 54

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=99.96  E-value=2.2e-31  Score=212.57  Aligned_cols=144  Identities=36%  Similarity=0.439  Sum_probs=120.1

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||.++|+++|||+++|++||+|++++|.++++++..   .+.+.++|+|++..  +.+||.+.+.|.+
T Consensus        34 mFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~gkae~~---~p~r~~~Hpdsp~t--G~~WM~~~VsF~k  108 (193)
T 1h6f_A           34 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPE---MPKRMYIHPDSPAT--GEQWMSKVVTFHK  108 (193)
T ss_dssp             CSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC---CCCCCEECTTCSEE--HHHHTTSCEECTT
T ss_pred             cCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEECcccCCC---CCcceEecCCCccc--HHHHhhCCcceee
Confidence            899999999999999999999999999999999999999999987742   24688899999985  5668999999999


Q ss_pred             eeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661         81 YKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL  152 (190)
Q Consensus        81 lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl  152 (190)
                      +|+|++.+|.++        +|+..|||+++++.            . ..+....+.|.+|++.|+++++||| ..+++|
T Consensus       109 lKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~~~------------~-~~~~~~~~tf~FpeT~FiAVTaYQN-~~It~L  174 (193)
T 1h6f_A          109 LKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI------------L-KLPYSTFRTYLFPETEFIAVTAYQN-DKITQL  174 (193)
T ss_dssp             CCEECCTTCCSCCEECCTTEEEEEEEEEECCSCG------------G-GGGGSCCEEEECGGGCEEEESSCSC-HHHHHH
T ss_pred             eeeeccCCCCCCcEEecCCceEeeEEEEEEcCCc------------c-CCCCcceEEEECCCeEEEEEeccCc-hhhhhh
Confidence            999999876554        45555666555431            0 0111235789999999999999999 899999


Q ss_pred             EeecCCCCCCCc
Q psy16661        153 KLTNNISDKHGF  164 (190)
Q Consensus       153 KItnn~~~k~~~  164 (190)
                      ||.+||||| ||
T Consensus       175 Ki~~NpFAk-gF  185 (193)
T 1h6f_A          175 KIDNNPFAK-GF  185 (193)
T ss_dssp             HHHHCGGGG-GG
T ss_pred             hhcCCCCCc-cc
Confidence            999999998 54

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=99.96  E-value=3.4e-31  Score=209.92  Aligned_cols=139  Identities=25%  Similarity=0.287  Sum_probs=117.9

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||.++|+++|||+++|++||||++++|.++++++...   +.+.++|+|++..  +.+||.+.+.|.+
T Consensus        31 mFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae~~~---p~r~~~Hpdsp~~--G~~WM~~~VsF~k  105 (184)
T 1xbr_A           31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQA---PSCVYIHPDSPNF--GAHWMKDPVSFSK  105 (184)
T ss_dssp             CSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCCC---CCCCEECTTCSEE--HHHHHHSCEECTT
T ss_pred             cCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccCCCC---CcceEECCCCchh--HHHHhhCCceecc
Confidence            8999999999999999999999999999999999999999999877432   3688899999985  5668999999999


Q ss_pred             eeEEEeCCCCC--------CceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661         81 YKVRVMGLDKK--------AKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL  152 (190)
Q Consensus        81 lk~~i~GLdp~--------~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl  152 (190)
                      +|+|++ ++..        .+|+..|||+++++.                 ....+.|.+|++.|+++++||| ..+++|
T Consensus       106 lKlTNn-~~~~~~i~L~SmHKY~PrlhI~~~~~~-----------------~~~~~tf~FpeT~FiAVTaYQN-~~It~L  166 (184)
T 1xbr_A          106 VKLTNK-MNGGGQIMLNSLHKYEPRIHIVRVGGT-----------------QRMITSHSFPETQFIAVTAYQN-EEITAL  166 (184)
T ss_dssp             CEEESS-CCTTTCEECCSSSEEEEEEEEEEESSS-----------------SCCEEEEECGGGCEEEESSCCC-HHHHHH
T ss_pred             cccccc-CCCCCeEEeccCceEEEEEEEEEeCCC-----------------cceEEEEECCCcEEEEEeccCC-hhHhhh
Confidence            999998 3433        456666666655431                 1234689999999999999999 899999


Q ss_pred             EeecCCCCCCCc
Q psy16661        153 KLTNNISDKHGF  164 (190)
Q Consensus       153 KItnn~~~k~~~  164 (190)
                      ||.+||||| ||
T Consensus       167 Ki~~NpFAk-gF  177 (184)
T 1xbr_A          167 KIKHNPFAK-AF  177 (184)
T ss_dssp             HHHHCGGGH-HH
T ss_pred             hhccCCCCc-cc
Confidence            999999998 43

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=99.96  E-value=1.4e-30  Score=209.45  Aligned_cols=147  Identities=24%  Similarity=0.327  Sum_probs=119.1

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceec--ccCccceeeeeEeeCccccceEEEeeeecccCcccccccccccc
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKF--HNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMF   78 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~--~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~f   78 (190)
                      |||.++|+|+||||.++|+++|||+|+|++||||  ++++|.++++++..   .+.+.++|+|++..  +..||.+.+.|
T Consensus        45 mFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~gkae~~---~p~r~~~Hpdsp~t--G~~WM~~~VsF  119 (203)
T 4a04_A           45 MFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPA---TPGRVHYHPDSPAK--GAQWMKQIVSF  119 (203)
T ss_dssp             CSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEEEECCCC---CCCCCCBCTTCSEE--HHHHHHSCEEE
T ss_pred             cCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeECCccCCC---CCCceEEcCCCCcC--HHHHhhCccee
Confidence            8999999999999999999999999999999995  89999999987743   23577889999984  56699999999


Q ss_pred             ceeeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceee
Q psy16661         79 PAYKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFH  150 (190)
Q Consensus        79 P~lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~  150 (190)
                      .++|+|++.+|.++        +|+..|||++++...     +     ....+....+.|.+|++.|+++++||| ..++
T Consensus       120 ~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~-----~-----~~~~~~~~~~tf~FpeT~FiAVTaYQN-~~It  188 (203)
T 4a04_A          120 DKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRK-----D-----SEKYAEENFKTFVFEETRFTAVTAYQN-HRIT  188 (203)
T ss_dssp             CSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCCC------------------CCEEEEECGGGCEEEESSCCC-HHHH
T ss_pred             eeeecccCccCcCCEEEEeeccccccEEEEEEcCCCc-----c-----cccccCCceEEEECCCcEEEeeCccCC-HHHH
Confidence            99999999866554        466666666665420     0     000112345789999999999999999 7999


Q ss_pred             EEEeecCCCCCCCc
Q psy16661        151 KLKLTNNISDKHGF  164 (190)
Q Consensus       151 klKItnn~~~k~~~  164 (190)
                      +|||.|||||| ||
T Consensus       189 ~LKi~~NPFAk-gF  201 (203)
T 4a04_A          189 QLKIASNPFAK-GF  201 (203)
T ss_dssp             HHHHHHCGGGG-GG
T ss_pred             HHHhccCCCCc-cc
Confidence            99999999998 54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	9e-43
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	3e-11
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	1e-42
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	7e-10

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  139 bits (351), Expect = 9e-43
 Identities = 44/93 (47%), Positives = 62/93 (66%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP  KV + GLD  A Y +L+D VAAD+ R+K+ N  W+  GK +P+ P  +YIHPD
Sbjct: 29  RRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPD 88

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMS 167
           SP+ G  WM+  VSF K+KLTN ++     +++
Sbjct: 89  SPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLN 121

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP +K  +SGLD  A Y +LLD VA+D+ R+K+ N +
Sbjct: 31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGE 68

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (350), Expect = 1e-42
 Identities = 82/96 (85%), Positives = 89/96 (92%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 29  RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 88

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASV 170
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+
Sbjct: 89  SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSM 124

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP  K R SGLD KAKYILL+DI+A+DD RYKFHN +
Sbjct: 31 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSR 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	99.96
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	99.96

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-41  Score=263.23  Aligned_cols=135  Identities=61%  Similarity=1.012  Sum_probs=122.9

Q ss_pred             eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661         44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD  122 (190)
Q Consensus        44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e  122 (190)
                      ++++.+.+-|.+++.. .++      ..++.||||||.|+++++||||++.|.+.|+|+++|++||+|++|+|.++|+++
T Consensus         3 ~V~L~~~~lW~~F~~~~tEM------IvTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~g~~e   76 (184)
T d1h6fa_           3 KVHLEAKELWDQFHKRGTEM------VITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKAD   76 (184)
T ss_dssp             EEEETTHHHHHHHHHHCCEE------ECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECC
T ss_pred             EEEECCHHHHHHhccCCCEE------EEecCCcccCceeEEEEeccCCCcceEEEEEEEECcCCeeeEeCCcEEEcccCC
Confidence            4566666667776644 333      346889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCC
Q psy16661        123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKT  184 (190)
Q Consensus       123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~  184 (190)
                      +..+.++|+|||||.+|++||+++|+|.+|||||+..+++|+|+|+|||||+|++.|.+...
T Consensus        77 ~~~~~~~~~Hpdsp~tG~~WM~~~i~F~k~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~~  138 (184)
T d1h6fa_          77 PEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND  138 (184)
T ss_dssp             CCCCCCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSC
T ss_pred             CCCCCceEECCCCCcCHHHHHhCccccchhhhcCCccCcccchhHhhcccCCCeEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999998764

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.6e-40  Score=260.86  Aligned_cols=135  Identities=37%  Similarity=0.668  Sum_probs=121.5

Q ss_pred             eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661         44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD  122 (190)
Q Consensus        44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e  122 (190)
                      ++++.+.+-|.+++.. .+++      .++.||||||.|+++++||||++.|.+.|+|+++|++||+|.+++|+++|+++
T Consensus         3 ~v~L~~~~LW~~F~~~~tEMI------ITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky~~~~W~~~g~~e   76 (184)
T d1xbra_           3 KVSLEERDLWTRFKELTNEMI------VTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPE   76 (184)
T ss_dssp             EEEETTHHHHHHHHHHCCEEE------CBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCC
T ss_pred             EEEecCHHHHHHhccCCCEEE------EecCCcccCCceEEEEECCCcCccEEEEEEEEEccCcEEEEECCcEEECCccC
Confidence            5566666777777754 3444      46899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCCc
Q psy16661        123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTS  185 (190)
Q Consensus       123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~~  185 (190)
                      ++.+.++|+|||||.+|++||+++|+|++|||||+. ++.|+|+|+|||||+|++.|.+...+
T Consensus        77 ~~~~~~~~~Hpdsp~tG~~WM~~~i~F~klKlTN~~-~~~~~i~L~SmHKYqPrl~I~~~~~~  138 (184)
T d1xbra_          77 PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQIMLNSLHKYEPRIHIVRVGGT  138 (184)
T ss_dssp             CCCCCCCEECTTCSEEHHHHHHSCEECTTCEEESSC-CTTTCEECCSSSEEEEEEEEEEESSS
T ss_pred             CCCCCceEECCCCCcCHHHHhhCccccceeeeeccC-CCCCceEEecccceeeeEEEEEeCCC
Confidence            999999999999999999999999999999999995 56699999999999999999987654

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.96  E-value=2.3e-31  Score=208.41  Aligned_cols=138  Identities=26%  Similarity=0.272  Sum_probs=119.4

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||+++|.++|||+|+|++||||++++|.++++.+.   .+..++++|+|++..  +.+||.+...|.+
T Consensus        31 mFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky~~~~W~~~g~~e~---~~~~~~~~Hpdsp~t--G~~WM~~~i~F~k  105 (184)
T d1xbra_          31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEP---QAPSCVYIHPDSPNF--GAHWMKDPVSFSK  105 (184)
T ss_dssp             CSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCC---CCCCCCEECTTCSEE--HHHHHHSCEECTT
T ss_pred             cCCceEEEEECCCcCccEEEEEEEEEccCcEEEEECCcEEECCccCC---CCCCceEECCCCCcC--HHHHhhCccccce
Confidence            89999999999999999999999999999999999999999888763   345788899999985  5668999999999


Q ss_pred             eeEEEeC-------CCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEEE
Q psy16661         81 YKVRVMG-------LDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLK  153 (190)
Q Consensus        81 lk~~i~G-------Ldp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klK  153 (190)
                      +|++++.       |.+..+|+..|||+.+++.                 ....+.|.+|++.|+++++||| ..+++||
T Consensus       106 lKlTN~~~~~~~i~L~SmHKYqPrl~I~~~~~~-----------------~~~~~~f~FpeT~FiaVTaYQN-~~It~lK  167 (184)
T d1xbra_         106 VKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGT-----------------QRMITSHSFPETQFIAVTAYQN-EEITALK  167 (184)
T ss_dssp             CEEESSCCTTTCEECCSSSEEEEEEEEEEESSS-----------------SCCEEEEECGGGCEEEESSCCC-HHHHHHH
T ss_pred             eeeeccCCCCCceEEecccceeeeEEEEEeCCC-----------------ccceeEEEcCCeEEEEEeecCc-HHHhHHH
Confidence            9999763       5555677777888777642                 1124579999999999999999 8999999


Q ss_pred             eecCCCCC
Q psy16661        154 LTNNISDK  161 (190)
Q Consensus       154 Itnn~~~k  161 (190)
                      |.||||||
T Consensus       168 i~~NpFAk  175 (184)
T d1xbra_         168 IKHNPFAK  175 (184)
T ss_dssp             HHHCGGGH
T ss_pred             hccCcccc
Confidence            99999998

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-31  Score=207.60  Aligned_cols=144  Identities=36%  Similarity=0.453  Sum_probs=121.9

Q ss_pred             CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661          1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA   80 (190)
Q Consensus         1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~   80 (190)
                      |||.++|+|+||||+++|.++|||+++|++||+|++++|.++++++.   .+..+.++|+|++..  +.+||.+...|.+
T Consensus        31 mFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~g~~e~---~~~~~~~~Hpdsp~t--G~~WM~~~i~F~k  105 (184)
T d1h6fa_          31 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADP---EMPKRMYIHPDSPAT--GEQWMSKVVTFHK  105 (184)
T ss_dssp             CSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCC---CCCCCCEECTTCSEE--HHHHTTSCEECTT
T ss_pred             cCceeEEEEeccCCCcceEEEEEEEECcCCeeeEeCCcEEEcccCCC---CCCCceEECCCCCcC--HHHHHhCccccch
Confidence            89999999999999999999999999999999999999999988763   345778899999884  5669999999999


Q ss_pred             eeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661         81 YKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL  152 (190)
Q Consensus        81 lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl  152 (190)
                      +|++++..|.++        +|+..|||+.+++.-    .         ......+.|.+|++.|+++++||| ..+++|
T Consensus       106 ~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~~~~----~---------~~~~~~~~f~FpeT~FiAVTaYQN-~~It~l  171 (184)
T d1h6fa_         106 LKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL----K---------LPYSTFRTYLFPETEFIAVTAYQN-DKITQL  171 (184)
T ss_dssp             CCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGG----G---------GGGSCCEEEECGGGCEEEESSCSC-HHHHHH
T ss_pred             hhhcCCccCcccchhHhhcccCCCeEEEEEeCCCC----C---------CCccceEEEECCCeEEEEEccccc-hhHHHH
Confidence            999998765554        677778877766520    0         011234789999999999999999 899999


Q ss_pred             EeecCCCCCCCc
Q psy16661        153 KLTNNISDKHGF  164 (190)
Q Consensus       153 KItnn~~~k~~~  164 (190)
                      ||.|||||| |+
T Consensus       172 Ki~~NpFAk-gf  182 (184)
T d1h6fa_         172 KIDNNPFAK-GF  182 (184)
T ss_dssp             HHHHCGGGG-GG
T ss_pred             HhccCcccc-cc
Confidence            999999998 54