Psyllid ID: psy16696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
ACTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKILE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEccccccEEccccEEEccccccccccccccEEEccccccccccccccEEEEcEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHHEEEEHHHHHHccEEccHHHHHHHHccHHcccccccEEEEEHHHHHHHEEcHHHHEEccccccEEEcccEEEEEEEEEEEEEEcHHHHHEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
ACTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKtnntlivpsdannIASMVTQAWVVERMGKYhrilepglnilipiIDKIKYVQSLKEIAidvpqqsaitsdnvtlsIDGVLYlkindpylasygvedpefAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLryeirdiklpsRVNEAMQMQVEAERKKRAAILESEgiraadinvAEGKRQAKILEAAKYLCKLLIKRAAILESegiraadinvaeGKRQAKILE
Flexible Loop (DISEMBL)
ACTTPVATALLSVAEARAKSLDLVAKALetkdgrsaasLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIdvpqqsaitsdnvTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHainnaseawgiTCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILesegiraadinvaeGKRQAKILEAAKYLCKLLIKRAAIlesegiraadinvaegkrqakile
Low Complexity Region (SEG)
ACTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKILE
Disordered region (IsUnstruct)
*********LLSV*******LDLVA************SLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPS*******************IL**EGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADIN************
Disordered Region (DISOPRED)
****PVA*ALLSVAEARAK************************QYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQV**ERKKRAAILESEGIRAADINVAEGKRQAKILEAAKY**************************GKRQAKILE
Disordered Region (DISEMBL)
ACTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKILE
Disordered Region (DISPRO)
*CTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKIL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ACTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKILE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9UJZ1	356	Stomatin-like protein 2 O	yes	N/A	0.679	0.564	0.7	1e-84
Q32LL2	356	Stomatin-like protein 2 O	yes	N/A	0.679	0.564	0.695	5e-84
Q4FZT0	353	Stomatin-like protein 2 O	yes	N/A	0.679	0.569	0.690	6e-84
Q99JB2	353	Stomatin-like protein 2 O	yes	N/A	0.679	0.569	0.690	6e-84
O60121	354	Uncharacterized protein C	yes	N/A	0.746	0.624	0.577	1e-67
P72655	321	Uncharacterized protein s	N/A	N/A	0.682	0.629	0.430	2e-42
P0DKS0	313	Protein QmcA OS=Wiggleswo	yes	N/A	0.689	0.651	0.380	1e-40
P0AA56	305	Protein QmcA OS=Shigella	yes	N/A	0.618	0.6	0.404	3e-39
P0AA53	305	Protein QmcA OS=Escherich	N/A	N/A	0.618	0.6	0.404	3e-39
P0AA54	305	Protein QmcA OS=Escherich	yes	N/A	0.618	0.6	0.404	3e-39

>sp|Q9UJZ1|STML2_HUMAN Stomatin-like protein 2 OS=Homo sapiens GN=STOML2 PE=1 SV=1

 Score =  313 bits (801), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/210 (70%), Positives = 174/210 (82%), Gaps = 9/210 (4%)

Query: 47  KAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQ 106
           +A + L +    L VP           +AWVVERMG++HRILEPGLNILIP++D+I+YVQ
Sbjct: 27  RASSGLPRNTVVLFVPQQ---------EAWVVERMGRFHRILEPGLNILIPVLDRIRYVQ 77

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSE 166
           SLKEI I+VP+QSA+T DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSE
Sbjct: 78  SLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSE 137

Query: 167 LGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226
           LGK+SLDKVFRERESLN SIV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAE
Sbjct: 138 LGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAE 197

Query: 227 RKKRAAILESEGIRAADINVAEGKRQAKIL 256
           R+KRA +LESEG R + INVAEGK+QA+IL
Sbjct: 198 RRKRATVLESEGTRESAINVAEGKKQAQIL 227

Homo sapiens (taxid: 9606)

>sp|Q32LL2|STML2_BOVIN Stomatin-like protein 2 OS=Bos taurus GN=STOML2 PE=2 SV=1

 Score =  311 bits (796), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 146/210 (69%), Positives = 174/210 (82%), Gaps = 9/210 (4%)

Query: 47  KAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQ 106
           +A + L +    L VP           +AWVVERMG++HRILEPGLNILIP++D+I+YVQ
Sbjct: 27  RASSGLPRNTVVLFVPQQ---------EAWVVERMGRFHRILEPGLNILIPVLDRIRYVQ 77

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSE 166
           SLKEI I+VP+QSA+T DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSE
Sbjct: 78  SLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSE 137

Query: 167 LGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226
           LGK+SLDKVFRERESLN SIV AIN A++ WGI CLRYEI+DI +P RV E+M+MQVEAE
Sbjct: 138 LGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMKMQVEAE 197

Query: 227 RKKRAAILESEGIRAADINVAEGKRQAKIL 256
           R+KRA +LESEG R + INVAEGK+QA+IL
Sbjct: 198 RRKRATVLESEGTRESAINVAEGKKQAQIL 227

Bos taurus (taxid: 9913)

>sp|Q4FZT0|STML2_RAT Stomatin-like protein 2 OS=Rattus norvegicus GN=Stoml2 PE=1 SV=1

 Score =  310 bits (795), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/210 (69%), Positives = 174/210 (82%), Gaps = 9/210 (4%)

Query: 47  KAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQ 106
           +A + L +    L VP           +AWVVERMG++HRILEPGLN+LIP++D+I+YVQ
Sbjct: 27  RASSGLPRNTVILFVPQQ---------EAWVVERMGRFHRILEPGLNVLIPVLDRIRYVQ 77

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSE 166
           SLKEI I+VP+QSA+T DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSE
Sbjct: 78  SLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSE 137

Query: 167 LGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226
           LGK+SLDKVFRERESLN +IV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAE
Sbjct: 138 LGKLSLDKVFRERESLNANIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAE 197

Query: 227 RKKRAAILESEGIRAADINVAEGKRQAKIL 256
           R+KRA +LESEG R + INVAEGK+QA+IL
Sbjct: 198 RRKRATVLESEGTRESAINVAEGKKQAQIL 227

Rattus norvegicus (taxid: 10116)

>sp|Q99JB2|STML2_MOUSE Stomatin-like protein 2 OS=Mus musculus GN=Stoml2 PE=1 SV=1

 Score =  310 bits (795), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/210 (69%), Positives = 174/210 (82%), Gaps = 9/210 (4%)

Query: 47  KAFNELAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQ 106
           +A + L +    L VP           +AWVVERMG++HRILEPGLN+LIP++D+I+YVQ
Sbjct: 27  RASSGLPRNTVILFVPQQ---------EAWVVERMGRFHRILEPGLNVLIPVLDRIRYVQ 77

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSE 166
           SLKEI I+VP+QSA+T DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSE
Sbjct: 78  SLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSE 137

Query: 167 LGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226
           LGK+SLDKVFRERESLN +IV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAE
Sbjct: 138 LGKLSLDKVFRERESLNANIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAE 197

Query: 227 RKKRAAILESEGIRAADINVAEGKRQAKIL 256
           R+KRA +LESEG R + INVAEGK+QA+IL
Sbjct: 198 RRKRATVLESEGTRESAINVAEGKKQAQIL 227

Mus musculus (taxid: 10090)

>sp|O60121|YH77_SCHPO Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.07c PE=3 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/225 (57%), Positives = 165/225 (73%), Gaps = 4/225 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  A+VVERMG++ RIL PG+  L PIIDKI Y+ SLKE A+++P QSAIT 
Sbjct: 50  NTIIKFVPQQVAYVVERMGRFSRILTPGVAFLAPIIDKIAYIHSLKERALEIPTQSAITL 109

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNV+L +DGVLY+++ DPY ASYGVED ++AI+QLAQTTMRSE+G+++LD V RER+SLN
Sbjct: 110 DNVSLGLDGVLYIQVYDPYKASYGVEDADYAISQLAQTTMRSEIGRLTLDHVLRERQSLN 169

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
             I  AIN A+E+WGI CLR+EIRDI+ P  V  AM  QV AER+KRA ILESEG R A 
Sbjct: 170 IHITDAINKAAESWGIRCLRHEIRDIRPPESVVMAMHQQVSAERQKRAEILESEGKRQAA 229

Query: 244 INVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEG 288
           INVAEG +QA+IL++     K +   +A+ E++ IR      A G
Sbjct: 230 INVAEGDKQAEILDSEGQKIKTI--NSALAEAQAIREKASATASG 272

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 145/223 (65%), Gaps = 21/223 (9%)

Query: 76  WVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLY 135
           ++VER+G Y++ L PGLN  +PI+D++ + Q+ +E  ID+P QS IT DNV ++ D V+Y
Sbjct: 29  YLVERLGSYNKKLTPGLNFTVPILDRVVFKQTTREKVIDIPPQSCITKDNVAITADAVVY 88

Query: 136 LKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE 195
            +I D   A Y VE+ + A+  L  T +RSE+GK+ LD+ F  R  +NE ++  ++ +++
Sbjct: 89  WRIIDMEKAYYKVENLQSAMVNLVLTQIRSEIGKLELDQTFTARTEINELLLRELDISTD 148

Query: 196 AWGITCLRYEIRDIKLPSR-VNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAK 254
            WG+   R E+RDI +PS+ V ++M++Q+ AERKKRAAIL SEG R + IN A+G  QA+
Sbjct: 149 PWGVKVTRVELRDI-MPSKAVLDSMELQMTAERKKRAAILTSEGQRDSAINSAQGDAQAR 207

Query: 255 ILEA-AKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKILE 296
           +LEA AK       K+AAIL            AE ++Q K+LE
Sbjct: 208 VLEAEAK-------KKAAILN-----------AEAEQQKKVLE 232

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 138/221 (62%), Gaps = 17/221 (7%)

Query: 76  WVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLY 135
           W +ER GKY   L PG+N +IP +D+I +  ++ E  ID+P Q  I+ DN  ++ID + +
Sbjct: 27  WTIERFGKYIETLNPGINFIIPFVDRIGHKINMMERVIDIPSQEIISKDNANVTIDAICF 86

Query: 136 LKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE 195
           ++I +   A+Y V + E AI  L  T MR+ LG + LD++  +R+++N  +++ ++ A++
Sbjct: 87  IQITNANNAAYRVSNLEIAIINLTMTNMRTVLGNMELDEMLSQRDNINIQLLNIVDEATK 146

Query: 196 AWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255
            WG+   R EI+DI+ P+ + E+M  Q++AER KRA ILE+EGIR A I  AEG++Q++I
Sbjct: 147 PWGVKITRVEIKDIRPPAELIESMNAQMKAERTKRADILEAEGIRQAAILKAEGEKQSQI 206

Query: 256 LEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKILE 296
           L+A                 EG + + I  AEG+RQ++ L+
Sbjct: 207 LKA-----------------EGEKQSQILKAEGERQSEFLK 230

Wigglesworthia glossinidia brevipalpis (taxid: 36870)

>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 123/183 (67%)

Query: 76  WVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLY 135
           W VER G+Y + L+PGL++++P +D+I    ++ E  +D+P Q  I+ DN  ++ID V +
Sbjct: 29  WTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCF 88

Query: 136 LKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE 195
           +++ D   A+Y V + E AI  L  T +R+ LG + LD++  +R+S+N  ++  ++ A+ 
Sbjct: 89  IQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148

Query: 196 AWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255
            WGI   R EIRD++ P+ +  +M  Q++AER KRA ILE+EGIR A+I  AEG++Q++I
Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQI 208

Query: 256 LEA 258
           L+A
Sbjct: 209 LKA 211

Shigella flexneri (taxid: 623)

>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 123/183 (67%)

Query: 76  WVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLY 135
           W VER G+Y + L+PGL++++P +D+I    ++ E  +D+P Q  I+ DN  ++ID V +
Sbjct: 29  WTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCF 88

Query: 136 LKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE 195
           +++ D   A+Y V + E AI  L  T +R+ LG + LD++  +R+S+N  ++  ++ A+ 
Sbjct: 89  IQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148

Query: 196 AWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255
            WGI   R EIRD++ P+ +  +M  Q++AER KRA ILE+EGIR A+I  AEG++Q++I
Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQI 208

Query: 256 LEA 258
           L+A
Sbjct: 209 LKA 211

Identified as a multi-copy suppressor of an FtsH/HtpX protease double disruption mutant. May play a role in the quality control of integral membrane proteins.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 123/183 (67%)

Query: 76  WVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLY 135
           W VER G+Y + L+PGL++++P +D+I    ++ E  +D+P Q  I+ DN  ++ID V +
Sbjct: 29  WTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCF 88

Query: 136 LKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE 195
           +++ D   A+Y V + E AI  L  T +R+ LG + LD++  +R+S+N  ++  ++ A+ 
Sbjct: 89  IQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148

Query: 196 AWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255
            WGI   R EIRD++ P+ +  +M  Q++AER KRA ILE+EGIR A+I  AEG++Q++I
Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQI 208

Query: 256 LEA 258
           L+A
Sbjct: 209 LKA 211

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
357609159	408	hypothetical protein KGM_00459 [Danaus p	0.645	0.468	0.870	9e-95
170029842	329	erythrocyte band 7 integral membrane pro	0.618	0.556	0.885	5e-94
158284767	349	AGAP009439-PA [Anopheles gambiae str. PE	0.645	0.547	0.844	9e-94
389612572	398	similar to CG2970, partial [Papilio xuth	0.716	0.532	0.761	1e-93
189239399	361	PREDICTED: similar to AGAP009439-PA [Tri	0.645	0.529	0.834	2e-90
270010509	329	hypothetical protein TcasGA2_TC009914 [T	0.645	0.580	0.834	2e-90
195028370	357	GH21699 [Drosophila grimshawi] gi|193903	0.645	0.535	0.829	6e-90
195122732	349	GI18853 [Drosophila mojavensis] gi|19391	0.645	0.547	0.823	1e-89
156548200	385	PREDICTED: stomatin-like protein 2-like	0.645	0.496	0.823	1e-89
195431513	364	GK15718 [Drosophila willistoni] gi|19415	0.645	0.524	0.818	2e-89

>gi|357609159|gb|EHJ66325.1| hypothetical protein KGM_00459 [Danaus plexippus]

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 168/193 (87%), Positives = 182/193 (94%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  AW+VERMGK+HR+LEPGLN+L PI+DKIKYVQSLKEIAIDVP+QSAITS
Sbjct: 45  NTIIMFVPQQEAWIVERMGKFHRLLEPGLNLLWPIVDKIKYVQSLKEIAIDVPKQSAITS 104

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTLSIDGVLYL+I DPYLASYGVEDPEFAITQLAQTTMRSELG+ISLDKVFRERESLN
Sbjct: 105 DNVTLSIDGVLYLRIVDPYLASYGVEDPEFAITQLAQTTMRSELGQISLDKVFRERESLN 164

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIVHAIN ASEAWGITCLRYEIRDIKLP+RV+EAMQMQVEAER+KRAAILESEG+RAAD
Sbjct: 165 VSIVHAINKASEAWGITCLRYEIRDIKLPTRVHEAMQMQVEAERRKRAAILESEGVRAAD 224

Query: 244 INVAEGKRQAKIL 256
           INVAEGKRQ++IL
Sbjct: 225 INVAEGKRQSRIL 237

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029842|ref|XP_001842800.1| erythrocyte band 7 integral membrane protein [Culex quinquefasciatus] gi|167864782|gb|EDS28165.1| erythrocyte band 7 integral membrane protein [Culex quinquefasciatus]

 Score =  350 bits (897), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 162/183 (88%), Positives = 179/183 (97%)

Query: 74  QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGV 133
           +AWVVERMGK+HRILEPGLN+L+PI+D++KYVQSLKEIAIDVP+QSAITSDNVTLSIDGV
Sbjct: 7   EAWVVERMGKFHRILEPGLNVLLPIVDRVKYVQSLKEIAIDVPKQSAITSDNVTLSIDGV 66

Query: 134 LYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNA 193
           LYL+I +PYLASYGVEDPEFAITQLAQTTMRSELGK+SLDKVFRERESLN SIV +IN A
Sbjct: 67  LYLRILNPYLASYGVEDPEFAITQLAQTTMRSELGKMSLDKVFRERESLNYSIVESINKA 126

Query: 194 SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQA 253
           SEAWGITCLRYEIRDIKLPSRV+EAMQMQVEAER+KRAAILESEG+RAADINVAEGKRQ+
Sbjct: 127 SEAWGITCLRYEIRDIKLPSRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQS 186

Query: 254 KIL 256
           +IL
Sbjct: 187 RIL 189

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158284767|ref|XP_307851.4| AGAP009439-PA [Anopheles gambiae str. PEST] gi|157020889|gb|EAA03635.4| AGAP009439-PA [Anopheles gambiae str. PEST]

 Score =  349 bits (895), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 163/193 (84%), Positives = 182/193 (94%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N +   V Q  AW+VERMGK+HRILEPGLN+L+P++D++KYVQSLKEIAIDVP+QSAITS
Sbjct: 50  NTVIMFVPQQEAWIVERMGKFHRILEPGLNVLLPVVDRVKYVQSLKEIAIDVPKQSAITS 109

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTLSIDGVLYL+I DPYLASYGVEDPEFAITQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct: 110 DNVTLSIDGVLYLRILDPYLASYGVEDPEFAITQLAQTTMRSELGKMSLDKVFRERESLN 169

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWGI+CLRYEIRDIKLPSRV+EAMQMQVEAER+KRAAILESEG+RAAD
Sbjct: 170 ISIVESINKASEAWGISCLRYEIRDIKLPSRVHEAMQMQVEAERRKRAAILESEGVRAAD 229

Query: 244 INVAEGKRQAKIL 256
           INVAEGKRQ++IL
Sbjct: 230 INVAEGKRQSRIL 242

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389612572|dbj|BAM19716.1| similar to CG2970, partial [Papilio xuthus]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 191/231 (82%), Gaps = 19/231 (8%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N +   V Q  AW+VERMGK+HR+LEPGLN+L PI+DKIKYVQSLKEIAIDVP+QSAIT+
Sbjct: 44  NTVIMFVPQQEAWIVERMGKFHRLLEPGLNLLWPIVDKIKYVQSLKEIAIDVPKQSAITA 103

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTL IDGVLYL+I DPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN
Sbjct: 104 DNVTLGIDGVLYLRIIDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 163

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV AIN ASEAWGITCLRYEIRDIKLP+RV+EAMQMQVEAERKKRAAILESEG+RAAD
Sbjct: 164 VSIVDAINKASEAWGITCLRYEIRDIKLPTRVHEAMQMQVEAERKKRAAILESEGVRAAD 223

Query: 244 INVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKI 294
           INVAEGKRQA+                 IL SE  +   IN A G+ QA I
Sbjct: 224 INVAEGKRQAR-----------------ILASEAEKQEQINKASGEAQAMI 257

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239399|ref|XP_973602.2| PREDICTED: similar to AGAP009439-PA [Tribolium castaneum]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/193 (83%), Positives = 178/193 (92%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  AWVVERMGK+HRILEPGLN+LIP++D++KYVQSLKEIA+D+P+QSAITS
Sbjct: 28  NTIIMFVPQQEAWVVERMGKFHRILEPGLNVLIPVVDRVKYVQSLKEIAVDIPKQSAITS 87

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTL+IDGVLYL+I D YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERE+LN
Sbjct: 88  DNVTLNIDGVLYLRIVDAYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERENLN 147

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWG+TCLRYEIRDIKLP RV EAMQMQVEAERKKRAAILESEGIR AD
Sbjct: 148 VSIVDSINKASEAWGMTCLRYEIRDIKLPPRVQEAMQMQVEAERKKRAAILESEGIREAD 207

Query: 244 INVAEGKRQAKIL 256
           INVAEGKR+++IL
Sbjct: 208 INVAEGKRKSRIL 220

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010509|gb|EFA06957.1| hypothetical protein TcasGA2_TC009914 [Tribolium castaneum]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/193 (83%), Positives = 178/193 (92%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  AWVVERMGK+HRILEPGLN+LIP++D++KYVQSLKEIA+D+P+QSAITS
Sbjct: 42  NTIIMFVPQQEAWVVERMGKFHRILEPGLNVLIPVVDRVKYVQSLKEIAVDIPKQSAITS 101

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTL+IDGVLYL+I D YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERE+LN
Sbjct: 102 DNVTLNIDGVLYLRIVDAYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERENLN 161

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWG+TCLRYEIRDIKLP RV EAMQMQVEAERKKRAAILESEGIR AD
Sbjct: 162 VSIVDSINKASEAWGMTCLRYEIRDIKLPPRVQEAMQMQVEAERKKRAAILESEGIREAD 221

Query: 244 INVAEGKRQAKIL 256
           INVAEGKR+++IL
Sbjct: 222 INVAEGKRKSRIL 234

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028370|ref|XP_001987049.1| GH21699 [Drosophila grimshawi] gi|193903049|gb|EDW01916.1| GH21699 [Drosophila grimshawi]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 160/193 (82%), Positives = 178/193 (92%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  AWVVERMG++HRIL+PGLNIL+PI DKIKYVQSLKEIAIDVP+QSAITS
Sbjct: 37  NTIVMFVPQQEAWVVERMGRFHRILDPGLNILVPIADKIKYVQSLKEIAIDVPKQSAITS 96

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTLSIDGVLYL+I DPY ASYGVEDPEFAITQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct: 97  DNVTLSIDGVLYLRIIDPYRASYGVEDPEFAITQLAQTTMRSELGKMSLDKVFRERESLN 156

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWGI CLRYEIRDI+LP+RV+EAMQMQVEAER+KRAAILESEG+R A+
Sbjct: 157 VSIVDSINKASEAWGIACLRYEIRDIRLPTRVHEAMQMQVEAERRKRAAILESEGVREAE 216

Query: 244 INVAEGKRQAKIL 256
           IN+AEGKR+++IL
Sbjct: 217 INIAEGKRKSRIL 229

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122732|ref|XP_002005865.1| GI18853 [Drosophila mojavensis] gi|193910933|gb|EDW09800.1| GI18853 [Drosophila mojavensis]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 178/193 (92%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  AWVVERMG++HRIL+PGLNIL+P+ DKIKYVQSLKEIAIDVP+QSAITS
Sbjct: 26  NTIVMFVPQQEAWVVERMGRFHRILDPGLNILVPVADKIKYVQSLKEIAIDVPKQSAITS 85

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTLSIDGVLYL+I DPY ASYGVEDPEFAITQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct: 86  DNVTLSIDGVLYLRIIDPYRASYGVEDPEFAITQLAQTTMRSELGKMSLDKVFRERESLN 145

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWGI CLRYEIRDI+LP+RV+EAMQMQVEAER+KRAAILESEG+R A+
Sbjct: 146 VSIVDSINKASEAWGIACLRYEIRDIRLPTRVHEAMQMQVEAERRKRAAILESEGVREAE 205

Query: 244 INVAEGKRQAKIL 256
           IN+AEGKR+++IL
Sbjct: 206 INIAEGKRKSRIL 218

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548200|ref|XP_001607021.1| PREDICTED: stomatin-like protein 2-like [Nasonia vitripennis]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 176/193 (91%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N +   V Q  AW+VERMGK+HRILEPGLN+LIP+ID ++YVQSLKEIAIDVP+QSAITS
Sbjct: 45  NTVVMFVPQQEAWIVERMGKFHRILEPGLNLLIPVIDSVRYVQSLKEIAIDVPKQSAITS 104

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTLSIDGVLYLKIN+PYLASYGV+DPEFAI QLAQTTMRSELGKI+LDKVF+ERE LN
Sbjct: 105 DNVTLSIDGVLYLKINNPYLASYGVQDPEFAIIQLAQTTMRSELGKIALDKVFQEREGLN 164

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWGI+CLRYEIRDIKLP RV+ AMQMQVEAERKKRAAILESEGIR AD
Sbjct: 165 ISIVESINKASEAWGISCLRYEIRDIKLPERVHVAMQMQVEAERKKRAAILESEGIREAD 224

Query: 244 INVAEGKRQAKIL 256
           IN+A GKRQA+IL
Sbjct: 225 INIATGKRQARIL 237

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431513|ref|XP_002063782.1| GK15718 [Drosophila willistoni] gi|194159867|gb|EDW74768.1| GK15718 [Drosophila willistoni]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/193 (81%), Positives = 178/193 (92%), Gaps = 2/193 (1%)

Query: 66  NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
           N I   V Q  AWVVERMG++HRIL+PGLN+L+P+ DKIKYVQSLKEIAIDVP+QSAITS
Sbjct: 38  NTIVMFVPQQEAWVVERMGRFHRILDPGLNVLVPVADKIKYVQSLKEIAIDVPKQSAITS 97

Query: 124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
           DNVTLSIDGVLYL+I DPY ASYGVEDPEFAITQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct: 98  DNVTLSIDGVLYLRIIDPYRASYGVEDPEFAITQLAQTTMRSELGKMSLDKVFRERESLN 157

Query: 184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
            SIV +IN ASEAWGI CLRYEIRDI+LP+RV+EAMQMQVEAER+KRAAILESEG+R A+
Sbjct: 158 VSIVDSINKASEAWGIACLRYEIRDIRLPTRVHEAMQMQVEAERRKRAAILESEGVREAE 217

Query: 244 INVAEGKRQAKIL 256
           IN+AEGKR+++IL
Sbjct: 218 INIAEGKRKSRIL 230

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
FB|FBgn0034936	369	CG2970 [Drosophila melanogaste	0.709	0.569	0.752	6e-80
UNIPROTKB|A5PJA6	356	STOML2 "Stomatin (EPB72)-like	0.743	0.617	0.668	1.9e-74
UNIPROTKB|E2RKS8	356	PIGO "Uncharacterized protein"	0.743	0.617	0.668	1.9e-74
UNIPROTKB|Q9UJZ1	356	STOML2 "Stomatin-like protein	0.743	0.617	0.668	1.9e-74
UNIPROTKB|F1SIH5	356	STOML2 "Uncharacterized protei	0.743	0.617	0.668	1.9e-74
MGI|MGI:1913842	353	Stoml2 "stomatin (Epb7.2)-like	0.753	0.631	0.655	2.5e-74
RGD|1308285	353	Stoml2 "stomatin (Epb7.2)-like	0.753	0.631	0.655	2.5e-74
UNIPROTKB|Q32LL2	356	STOML2 "Stomatin-like protein	0.743	0.617	0.663	5.1e-74
ZFIN|ZDB-GENE-040426-1139	355	stoml2 "stomatin (EPB72)-like	0.743	0.619	0.654	7.5e-73
WB|WBGene00006061	324	stl-1 [Caenorhabditis elegans	0.645	0.589	0.709	7e-70

FB|FBgn0034936 CG2970 [Drosophila melanogaster (taxid:7227)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 161/214 (75%), Positives = 188/214 (87%)

Query:    74 QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGV 133
             +AWVVERMG++HRIL+PGLNIL+P+ DKIKYVQSLKEIAIDVP+QSAITSDNVTLSIDGV
Sbjct:    53 EAWVVERMGRFHRILDPGLNILVPVADKIKYVQSLKEIAIDVPKQSAITSDNVTLSIDGV 112

Query:   134 LYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNA 193
             LYL+I DPY ASYGVEDPEFAITQLAQTTMRSELGK+S+DKVFRERESLN SIV +IN A
Sbjct:   113 LYLRIIDPYKASYGVEDPEFAITQLAQTTMRSELGKMSMDKVFRERESLNVSIVDSINKA 172

Query:   194 SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQA 253
             SEAWGI CLRYEIRDI+LP+RV+EAMQMQVEAER+KRAAILESEG+R A+IN+AEGKR++
Sbjct:   173 SEAWGIACLRYEIRDIRLPTRVHEAMQMQVEAERRKRAAILESEGVREAEINIAEGKRKS 232

Query:   254 KIL----EAAKYLCKLLIKRAAILESEGIRAADI 283
             +IL    E  +++ K   + AAI+     RA  +
Sbjct:   233 RILASEAERQEHINKASGEAAAIIAVADARARSL 266

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A5PJA6 STOML2 "Stomatin (EPB72)-like 2" [Bos taurus (taxid:9913)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 151/226 (66%), Positives = 183/226 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLNILIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              SIV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LESEG R + 
Sbjct:   155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINV 285
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRI 260

GO:0008180 "signalosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|E2RKS8 PIGO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 151/226 (66%), Positives = 183/226 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLNILIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              SIV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LESEG R + 
Sbjct:   155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINV 285
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRI 260

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9UJZ1 STOML2 "Stomatin-like protein 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 151/226 (66%), Positives = 183/226 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLNILIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              SIV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LESEG R + 
Sbjct:   155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINV 285
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRI 260

GO:0010876 "lipid localization" evidence=ISS

GO:0032623 "interleukin-2 production" evidence=ISS

GO:0034982 "mitochondrial protein processing" evidence=ISS

GO:0035710 "CD4-positive, alpha-beta T cell activation" evidence=ISS

GO:1990046 "stress-induced mitochondrial fusion" evidence=ISS

GO:0008180 "signalosome" evidence=IDA

GO:0042101 "T cell receptor complex" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0050852 "T cell receptor signaling pathway" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0006851 "mitochondrial calcium ion transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=IMP

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=IMP

GO:1901612 "cardiolipin binding" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0001772 "immunological synapse" evidence=IDA

GO:0005102 "receptor binding" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

UNIPROTKB|F1SIH5 STOML2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 151/226 (66%), Positives = 183/226 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLNILIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              SIV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LESEG R + 
Sbjct:   155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINV 285
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRI 260

GO:0008180 "signalosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:1913842 Stoml2 "stomatin (Epb7.2)-like 2" [Mus musculus (taxid:10090)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 150/229 (65%), Positives = 184/229 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLN+LIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVILFVPQQEAWVVERMGRFHRILEPGLNVLIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              +IV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LESEG R + 
Sbjct:   155 ANIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINVAEG 288
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +  G
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAG 263

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0050852 "T cell receptor signaling pathway" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=ISO

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=ISO

GO:1901612 "cardiolipin binding" evidence=ISO

RGD|1308285 Stoml2 "stomatin (Epb7.2)-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 150/229 (65%), Positives = 184/229 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLN+LIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVILFVPQQEAWVVERMGRFHRILEPGLNVLIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              +IV AIN A++ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LESEG R + 
Sbjct:   155 ANIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINVAEG 288
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +  G
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAG 263

GO:0001772 "immunological synapse" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISO;ISS

GO:0006851 "mitochondrial calcium ion transport" evidence=ISO;ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO;ISS

GO:0008180 "signalosome" evidence=IEA;ISO

GO:0010876 "lipid localization" evidence=ISS

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=ISO;ISS

GO:0015629 "actin cytoskeleton" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO;ISS

GO:0032623 "interleukin-2 production" evidence=ISS

GO:0034982 "mitochondrial protein processing" evidence=ISS

GO:0035710 "CD4-positive, alpha-beta T cell activation" evidence=ISS

GO:0042101 "T cell receptor complex" evidence=ISO;ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISO;ISS

GO:0045121 "membrane raft" evidence=ISO;ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISO;ISS

GO:0051259 "protein oligomerization" evidence=ISO;ISS

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=ISO;ISS

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=ISO;ISS

GO:1901612 "cardiolipin binding" evidence=ISO;ISS

GO:1990046 "stress-induced mitochondrial fusion" evidence=ISS

UNIPROTKB|Q32LL2 STOML2 "Stomatin-like protein 2" [Bos taurus (taxid:9913)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 150/226 (66%), Positives = 183/226 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLNILIP++D+I+YVQSLKEI I+VP+QSA+T 
Sbjct:    35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DPY ASYGVEDPE+A+TQLAQTTMRSELGK+SLDKVFRERESLN
Sbjct:    95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              SIV AIN A++ WGI CLRYEI+DI +P RV E+M+MQVEAER+KRA +LESEG R + 
Sbjct:   155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMKMQVEAERRKRATVLESEGTRESA 214

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINV 285
             INVAEGK+QA+IL    E A+ + +   + +A+L     +A  I +
Sbjct:   215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRI 260

GO:0042101 "T cell receptor complex" evidence=ISS

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0001772 "immunological synapse" evidence=ISS

GO:1990046 "stress-induced mitochondrial fusion" evidence=ISS

GO:0035710 "CD4-positive, alpha-beta T cell activation" evidence=ISS

GO:0034982 "mitochondrial protein processing" evidence=ISS

GO:0032623 "interleukin-2 production" evidence=ISS

GO:0010876 "lipid localization" evidence=ISS

GO:0045121 "membrane raft" evidence=ISS

GO:1901612 "cardiolipin binding" evidence=ISS

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=ISS

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=ISS

GO:0051259 "protein oligomerization" evidence=ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISS

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0006851 "mitochondrial calcium ion transport" evidence=ISS

ZFIN|ZDB-GENE-040426-1139 stoml2 "stomatin (EPB72)-like 2" [Danio rerio (taxid:7955)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 148/226 (65%), Positives = 181/226 (80%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N +   V Q  AWVVERMG++HRILEPGLN LIPI+D+I+YVQSLKEI IDVP+QSA++ 
Sbjct:    40 NTVVLFVPQQEAWVVERMGRFHRILEPGLNFLIPILDRIRYVQSLKEIVIDVPEQSAVSL 99

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNVTL IDGVLYL+I DP+ ASYGVEDPE+A+TQLAQTTMRSELGK++LDKVFRERESLN
Sbjct:   100 DNVTLQIDGVLYLRILDPFKASYGVEDPEYAVTQLAQTTMRSELGKLTLDKVFRERESLN 159

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
              +IVH+IN AS+ WGI CLRYEI+DI +P RV E+MQMQVEAER+KRA +LES G R + 
Sbjct:   160 SNIVHSINQASDEWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESGGTRESA 219

Query:   244 INVAEGKRQAKIL----EAAKYLCKLLIKRAAILESEGIRAADINV 285
             INVAEG++QA+IL    E A+ + K   +  A+L     +A  I +
Sbjct:   220 INVAEGRKQAQILASEGEKAEQINKAAGEANAVLAKAEAKAKAIRL 265

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00006061 stl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 137/193 (70%), Positives = 167/193 (86%)

Query:    66 NNIASMVTQ--AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITS 123
             N + + V Q  AWVVERMGK+++ILEPGLN L+PIIDKIK+VQ+L+EIAI++P+Q AIT 
Sbjct:    35 NTVINFVPQQEAWVVERMGKFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITI 94

Query:   124 DNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLN 183
             DNV L +DGVLYL++ DPY ASYGV+DPEFA+TQLAQTTMRSE+GKI+LD VF+ERE LN
Sbjct:    95 DNVQLRLDGVLYLRVFDPYKASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLN 154

Query:   184 ESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAAD 243
             E+IV AIN AS  WGI C+RYEIRD+++PS++ EAMQMQVEAERKKRAAILESEGIR A 
Sbjct:   155 ENIVFAINKASAPWGIQCMRYEIRDMQMPSKIQEAMQMQVEAERKKRAAILESEGIREAA 214

Query:   244 INVAEGKRQAKIL 256
             IN AEG +++ IL
Sbjct:   215 INRAEGDKKSAIL 227

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4FZT0	STML2_RAT	No assigned EC number	0.6904	0.6790	0.5694	yes	N/A
Q99JB2	STML2_MOUSE	No assigned EC number	0.6904	0.6790	0.5694	yes	N/A
O60121	YH77_SCHPO	No assigned EC number	0.5777	0.7466	0.6242	yes	N/A
P0DKS0	QMCA_WIGBR	No assigned EC number	0.3800	0.6891	0.6517	yes	N/A
Q9UJZ1	STML2_HUMAN	No assigned EC number	0.7	0.6790	0.5646	yes	N/A
Q32LL2	STML2_BOVIN	No assigned EC number	0.6952	0.6790	0.5646	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	296
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	2e-87
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	2e-44
smart00244	160	smart00244, PHB, prohibitin homologues	3e-41
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	2e-28
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	2e-27
TIGR01933	261	TIGR01933, hflK, HflK protein	3e-19
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	2e-18
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	4e-16
cd03404	266	cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma	2e-13
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	8e-07
PRK10930	419	PRK10930, PRK10930, FtsH protease regulator HflK;	1e-06
PRK11029	334	PRK11029, PRK11029, FtsH protease regulator HflC;	1e-06
TIGR01932	317	TIGR01932, hflC, HflC protein	4e-06

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score =  259 bits (665), Expect = 2e-87
 Identities = 102/208 (49%), Positives = 136/208 (65%), Gaps = 5/208 (2%)

Query: 74  QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGV 133
           +  VVER+GKYHR L PGL+ +IP ID+I Y   L+E  +DVP Q  IT DNVT+ +D V
Sbjct: 5   ERGVVERLGKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAV 64

Query: 134 LYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNA 193
           LY ++ DP  A YGVED  +AI+QLAQTT+RS +GK+ LD++  ERE +N  +V  ++ A
Sbjct: 65  LYYRVVDPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEA 124

Query: 194 SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQA 253
           ++ WG+   R EI+DI LP  + EAM  Q EAER+KRA I+E+EG R A I +AE  +QA
Sbjct: 125 TDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQA 184

Query: 254 KILEAAKYLCKLLIKRAAILESEGIRAA 281
            I  AA     L ++    LE     AA
Sbjct: 185 AINPAA-----LQLRELETLEEIAKEAA 207

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score =  152 bits (386), Expect = 2e-44
 Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 6/214 (2%)

Query: 74  QAWVVERMGKYHRIL-EPGLNILIPI---IDKIKYVQSLKEIAIDV-PQQSAITSDNVTL 128
           +  VV R G+Y R L EPGL+  IP    I+++     L+E  +DV P Q  IT DNV +
Sbjct: 28  ERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIV 87

Query: 129 SIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERES-LNESIV 187
           S+D V+  ++ DP  A Y VE+ E A+ QL Q+ +RS +G+++LD++  ER + +N  I 
Sbjct: 88  SVDAVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIR 147

Query: 188 HAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVA 247
             ++ A++ WGI  +  EI+DI  P  V  AM+ Q+ AER KRA ILE+EG   A I  A
Sbjct: 148 EILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRA 207

Query: 248 EGKRQAKILEAAKYLCKLLIKRAAILESEGIRAA 281
           EG+ +A I+ A       +I RA    ++ I AA
Sbjct: 208 EGEAEAAIILAEAEAEAEVIARAEADAAKIIAAA 241

Length = 291

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  140 bits (354), Expect = 3e-41
 Identities = 71/152 (46%), Positives = 100/152 (65%), Gaps = 3/152 (1%)

Query: 74  QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGV 133
           +  VVER+G+  R+L PGL+ LIP ID +K    L+    DVP Q  IT DNV +S+D V
Sbjct: 10  ERGVVERLGRVLRVLGPGLHFLIPFIDDVK-KVDLRAQTDDVPPQETITKDNVKVSVDAV 68

Query: 134 LYLKINDPYLASYGVEDPEFA-ITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAIN 191
           +Y ++ DP  A Y V D ++A I QLAQTT+RS +GK +LD++   +RE ++E+I   +N
Sbjct: 69  VYYRVLDPLRAVYRVLDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKISENIREELN 128

Query: 192 NASEAWGITCLRYEIRDIKLPSRVNEAMQMQV 223
            A+EAWGI     EI+DI+LP  + EAM+ Q 
Sbjct: 129 EAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score =  105 bits (264), Expect = 2e-28
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP--EFAITQLAQTTMR 164
            L+   +DVP Q  +T DNV + +D V+  ++ DP  A Y V DP  E A+ QLAQ+ +R
Sbjct: 3   DLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALR 62

Query: 165 SELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQV 223
           S +GK++LD++  +R+ +   +  A+    + +GI  +   I+DI  P  V EAM+ + 
Sbjct: 63  SVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score =  104 bits (262), Expect = 2e-27
 Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 74  QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDV-PQQSAITSDNVTLSIDG 132
           +  VV R GK  R+L PGL+  +P I  I  V   +   ++V    + +T D V +++D 
Sbjct: 7   EVGVVTRFGKVSRVLGPGLHFKLPFIQTITVV-DTRLQTLEVTVDITVLTKDGVPVNVDV 65

Query: 133 VLYLKINDP---YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHA 189
            +  ++ DP        G ED +  +  L ++ +R  + + +LD++   RE + + +  A
Sbjct: 66  TVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEIAQEVKEA 125

Query: 190 INNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILE 235
           +    E +G+     +I DI  P  + EA++ +  AE++   A +E
Sbjct: 126 LQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIE 171

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 14/206 (6%)

Query: 77  VVERMGKYHRILEPGLNILIPIIDKIKYV--QSLKEIAIDVPQQSAITSDNVTLSIDGVL 134
           VV R GKYHR ++PGLN   P I+++  V   +++ +         +T D   ++++  +
Sbjct: 11  VVLRFGKYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGL---MLTGDENIVNVEMNV 67

Query: 135 YLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNA 193
             +I DPY   + VE+PE ++ Q   + +R  +G  ++D +  E R  + E     +N  
Sbjct: 68  QYRITDPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEI 127

Query: 194 SEAW--GITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKR 251
            + +  GIT      +  + P  V EA    + A   +   I E+E      +  A G  
Sbjct: 128 IDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDA 187

Query: 252 QAKILEAAKYLCKLLIKRAAILESEG 277
           Q  I EA  Y      K   I  ++G
Sbjct: 188 QRIIEEARGY------KERRINRAKG 207

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 15/212 (7%)

Query: 73  TQAWVVERMGK-YHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSID 131
            +  VV R G+    + EPGL+  +P I ++K     + + +D   Q  +T D   L +D
Sbjct: 7   GEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKF-DKRILTLDSDPQRVLTKDKKRLIVD 65

Query: 132 GVLYLKINDP--YLASYGVEDPEFAITQLAQ---TTMRSELGKISLDKVFR-ERESLNES 185
                +I DP  +  + G  +   A T+L Q   + +R+E GK +L ++   ER  L E 
Sbjct: 66  AYAKWRITDPLRFYQAVG-GEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEE 124

Query: 186 IVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADIN 245
           I  A+   ++  GI  +   I+ I LP  V+E++  ++ AER++ AA   +EG   A+  
Sbjct: 125 IRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERI 184

Query: 246 VAEGKRQAKILEAAKYLCKLLIKRAAILESEG 277
            A+  R+  ++ A  Y      + A  +  EG
Sbjct: 185 RADADRERTVILAEAY------REAQEIRGEG 210

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 48/185 (25%), Positives = 97/185 (52%), Gaps = 3/185 (1%)

Query: 74  QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGV 133
           Q  ++ER GK+ ++  PG + +IP+++ +    SL+   +DV +    T DNV +++ G 
Sbjct: 3   QVAIIERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDV-RVETKTKDNVFVTVVGQ 61

Query: 134 LYLKI--NDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAIN 191
           +  ++   +   A Y + +PE  I       +R+ + K++LD++F +++ + +++   + 
Sbjct: 62  IQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELR 121

Query: 192 NASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKR 251
            A   +G   +   I DI   + V  AM     A+R++ AA+ ++E  +  DI  AE   
Sbjct: 122 EAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADA 181

Query: 252 QAKIL 256
           +AK L
Sbjct: 182 EAKRL 186

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 25/218 (11%)

Query: 77  VVERMGKYHRILEPGLNILIP-IIDKIKYV----QSLKEIAIDVPQQSAITSDNVTLSID 131
           VV R GKY R +EPGL+  +P  I+ ++ V         I + V    ++  +++ L+ D
Sbjct: 25  VVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGD 84

Query: 132 G--------VLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESL 182
                    V Y +I+DPY   + V DPE  + Q A++ MR  +G+ +LD V  E RE +
Sbjct: 85  ENIVDVEFAVQY-RISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEI 143

Query: 183 NESI---VHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGI 239
            + +   + AI +A +A GI  +   ++D   P  V +A     +A + +   I E+E  
Sbjct: 144 AQDVRELLQAILDAYKA-GIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAY 202

Query: 240 RAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEG 277
               +  A G+    I EA  Y      K   I E++G
Sbjct: 203 ANEVVPKARGEAARIIQEAEAY------KEEVIAEAQG 234

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 266

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 23/233 (9%)

Query: 86  RILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP---- 141
           +++  G  I++PI   I+ + SL  I ++V   +  T D + L+++ V Y+KI D     
Sbjct: 62  KVVRGGGAIVMPIFQTIERM-SLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDI 120

Query: 142 --YLASYGVEDPEFAITQLAQTT----MRSELGKISLDKVFRERESLNESIVHAINNASE 195
                 +G +     + QLA+ T    +R+ L +++++++  +R    + +   + +   
Sbjct: 121 ATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLS 180

Query: 196 AWGITCLRYEIRDIKLPSRVNEAMQMQVEA-------ERKKRAAILESEGIRAADINVAE 248
             G+      I DI   S+ N+     ++A       +  + A I E+E  +  +I +AE
Sbjct: 181 KMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAE 240

Query: 249 GKRQAKILEAAKYLCKLLIKRAAILESEGIRAA-----DINVAEGKRQAKILE 296
             R AK++E                E + I A          AE +R+A+  E
Sbjct: 241 ANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAE 293

Length = 548

>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 35/230 (15%)

Query: 77  VVERMGKYHRILEPGLNILIPIIDKIK--YVQSLKEIAIDVPQQSAITSDNVTLSIDGVL 134
           VV R GK+  ++EPGLN     ID++K   V++++E+A        +TSD   + ++  +
Sbjct: 107 VVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELA---ASGVMLTSDENVVRVEMNV 163

Query: 135 YLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE---------RESLNES 185
             ++ DP    + V  P+ ++ Q   + +R  +GK ++D++  E         +  L E+
Sbjct: 164 QYRVTDPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEET 223

Query: 186 IVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADIN 245
           I           GIT L    +  + P  V  A    + A   ++  I E+E        
Sbjct: 224 I------RPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQP 277

Query: 246 VAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKIL 295
            A G+ Q +ILE A+       K   ILE++G         E  R AK+L
Sbjct: 278 RANGQAQ-RILEEAR-----AYKAQTILEAQG---------EVARFAKLL 312

Length = 419

>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 70/253 (27%)

Query: 77  VVERMGKYHR-------ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLS 129
           +V R GK  R       +  PGL+  IP I+ +K + + +   +D      +T +   L 
Sbjct: 30  IVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDA-RIQTMDNQADRFVTKEKKDLI 88

Query: 130 IDGVLYLKIND---PYLASYG--VEDPEFAITQLAQTTMRSELGKISLDKVFRE------ 178
           +D  +  +I+D    YLA+ G  +   E  + +     +RSE+G++ +  +  +      
Sbjct: 89  VDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLT 148

Query: 179 ---RESLNESIV------------HAINNASE-------------------AWGITCLRY 204
              R++LN                 AI +A+E                   A GI  +  
Sbjct: 149 LDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDV 208

Query: 205 EIRDIKLPSRVNEAMQMQVEAERKKRA------AILESEGIRA-ADINV----AEGKRQA 253
            I+ I LP+ V++A+  ++ AER+  A         E+E +RA AD  V    AE +RQ 
Sbjct: 209 RIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQG 268

Query: 254 KIL------EAAK 260
           +I+      EAAK
Sbjct: 269 RIMRGEGDAEAAK 281

Length = 334

>gnl|CDD|233644 TIGR01932, hflC, HflC protein

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 44/232 (18%)

Query: 86  RILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIND--PYL 143
            + EPGL+  IP I+ +K   + K   +D       T +   + ID  +  +I D   Y 
Sbjct: 46  LVYEPGLHFKIPFIEHVKIFDA-KIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYY 104

Query: 144 ASYGVEDPEFAITQLAQ---TTMRSELGKISLDKVFRE---------------------- 178
            S G      A   + +     +RSE+G + L ++ R                       
Sbjct: 105 LSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINK 164

Query: 179 --------RESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKR 230
                   RE L   I    N+  +  GI  +   I+ I     ++E++  ++ +ER++ 
Sbjct: 165 IAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQI 224

Query: 231 AAILESEGI-RAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAA 281
           A +  S+G  +A +I         KIL  A        + A I++ EG   A
Sbjct: 225 ARMHRSQGEEKAEEILGKAEYEVRKILSEAY-------RTARIIKGEGDAEA 269

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
KOG2620|consensus	301		100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
KOG2621|consensus	288		99.97
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.97
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.96
KOG3090|consensus	290		99.89
KOG3083|consensus	271		99.86
KOG2962|consensus	322		99.85
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.84
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.83
KOG2668|consensus	428		99.82
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.81
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.77
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.71
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.38
KOG2620|consensus	301		99.14
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.9
PTZ00491	850	major vault protein; Provisional	98.86
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	97.65
PRK13665	316	hypothetical protein; Provisional	97.27
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	97.19
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	96.46
COG1580	159	FliL Flagellar basal body-associated protein [Cell	93.96
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	93.68
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	92.93
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	92.93
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	92.56
PF03748	99	FliL: Flagellar basal body-associated protein FliL	91.51
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	90.36
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	89.68
PRK07718	142	fliL flagellar basal body-associated protein FliL;	89.26
PRK11029	334	FtsH protease regulator HflC; Provisional	88.94
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	88.17
PRK06654	181	fliL flagellar basal body-associated protein FliL;	86.74
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	85.08
KOG2668|consensus	428		84.07
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	82.65

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.6e-41  Score=297.92  Aligned_cols=203  Identities=26%  Similarity=0.440  Sum_probs=189.1

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcc--cccccCCC
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPY--LASYGVED  150 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~--~~~~~~~~  150 (296)
                      ++.+|++|||++.++++||+||++||++++....+++.++++++. .++|+|+++|+|+++++|||.||.  .++|++.+
T Consensus         2 ~~~~Vv~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~   80 (262)
T cd03407           2 SQVAIIERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGN   80 (262)
T ss_pred             cEEEEEeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCC
Confidence            367899999999999999999999999998643367999999976 489999999999999999999887  88899999


Q ss_pred             HHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHH
Q psy16696        151 PEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKR  230 (296)
Q Consensus       151 ~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~  230 (296)
                      +...|.+.+++++|+++|++++++++++|+.|...+.+.+++.+++|||.|++|.|++|+||+++.++|++++.|+++++
T Consensus        81 ~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~  160 (262)
T cd03407          81 PEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRV  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696        231 AAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK  293 (296)
Q Consensus       231 a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~  293 (296)
                      +.+.+|++++...+.+|++++++.+                 ..|++++++.++.|+|++++.
T Consensus       161 a~~~~Aea~~~~~i~~A~~ea~a~~-----------------~~Aeg~a~a~~~~A~g~~~~~  206 (262)
T cd03407         161 AAVHKAEAEKIKDIKAAEADAEAKR-----------------LQGVGAAEQRQAIADGLRESI  206 (262)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999                 778888888888888887764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.5e-40  Score=290.36  Aligned_cols=205  Identities=28%  Similarity=0.427  Sum_probs=191.0

Q ss_pred             HHHHHhhhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH
Q psy16696         73 TQAWVVERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP  151 (296)
Q Consensus        73 ~~~~vv~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~  151 (296)
                      ++.+|+++||++.+ +++||+||++||++++..++ ++.+.+++++..++|+|+++|+++++++|||.||..+++.+.++
T Consensus         7 ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~-~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~   85 (242)
T cd03405           7 GEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFD-KRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGE   85 (242)
T ss_pred             CeEEEEEEcCccccccCCCCeeEEcCCcceEEEEc-CEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcCh
Confidence            47899999999998 68999999999999999995 69999998888899999999999999999999998887665544


Q ss_pred             H----HHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696        152 E----FAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE  226 (296)
Q Consensus       152 ~----~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae  226 (296)
                      .    ..|.+.+++++|+++|++++++++++ |++|.+.+.+.+++.+.+|||+|++|.|++|+||+++.++|.+++.|+
T Consensus        86 ~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae  165 (242)
T cd03405          86 ERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAE  165 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHH
Confidence            3    67899999999999999999999987 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhh
Q psy16696        227 RKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKIL  295 (296)
Q Consensus       227 ~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~~  295 (296)
                      +++.+...++++++++.+..|+++++..+                 ..|+|++++.+++|+|||+++++
T Consensus       166 ~~~~a~~~~ae~~~~a~~~~aea~~~~~~-----------------~~Aea~a~a~~~~a~gea~a~~~  217 (242)
T cd03405         166 RERIAAEFRAEGEEEAERIRADADRERTV-----------------ILAEAYREAQEIRGEGDAEAARI  217 (242)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999888                 88999999999999999998764

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=1.6e-39  Score=286.78  Aligned_cols=204  Identities=26%  Similarity=0.408  Sum_probs=188.0

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHH
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE  152 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~  152 (296)
                      ++.+|+++||++.++++||+||++||++++..++. +.+....+...++|+|++.|.|+++++|||.||.+++|++.++.
T Consensus         7 ge~~Vv~~fGk~~~~l~pGl~~~~P~i~~v~~~~~-~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~~~~~~~   85 (261)
T TIGR01933         7 AERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPVNV-TAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPE   85 (261)
T ss_pred             CeEEEEEEcCccccccCCcceEECCCceEEEEeee-EEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHHhCCCHH
Confidence            47899999999999999999999999999999864 54432233445899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHHHHHHHH
Q psy16696        153 FAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQVEAERKK  229 (296)
Q Consensus       153 ~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~  229 (296)
                      ..|.+.+++++|+++|+++++++++ +|++|...+.+.+++.+..|  ||+|++|.|++++||+++.++|++++.|++++
T Consensus        86 ~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~  165 (261)
T TIGR01933        86 DSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDE  165 (261)
T ss_pred             HHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 79999999999999999965  99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhh
Q psy16696        230 RAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKI  294 (296)
Q Consensus       230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~  294 (296)
                      ++.+.+|+++++..+.+|++++++.+                 .+|+|++++++++|+|||+++.
T Consensus       166 ~~~~~~ae~~~~~~~~~a~~~a~~~~-----------------~~Aea~~~~~~~~a~g~a~~~~  213 (261)
T TIGR01933       166 ERYINEAEAYANEVVPKARGDAQRII-----------------EEARGYKERRINRAKGDVARFT  213 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999888                 8899999999999999999854

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=2.7e-39  Score=290.79  Aligned_cols=204  Identities=25%  Similarity=0.375  Sum_probs=186.9

Q ss_pred             HHHHhhhcCeeeE-------EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc
Q psy16696         74 QAWVVERMGKYHR-------ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY  146 (296)
Q Consensus        74 ~~~vv~r~G~~~~-------~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~  146 (296)
                      +.+|++|||++.+       +++||+||++||++++..+| +|.+.++++...++|+|++.|.|+++++|||.||..+++
T Consensus        27 e~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vd-vR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~Dp~~~~~  105 (334)
T PRK11029         27 ERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLD-ARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYL  105 (334)
T ss_pred             eEEEEEECCceeccccccccccCCceEEEcCCceEEEEEe-eEEEEeeCCCceEEcCCCCEEEEEEEEEEEECCHHHHHH
Confidence            7999999999987       38999999999999999995 599999999889999999999999999999999987765


Q ss_pred             cC--CC---HHHHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHH---------------------------
Q psy16696        147 GV--ED---PEFAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNA---------------------------  193 (296)
Q Consensus       147 ~~--~~---~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~---------------------------  193 (296)
                      ..  .|   +...|.+.+++++|+++|+++++++++ +|++|..++++.+++.                           
T Consensus       106 ~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (334)
T PRK11029        106 ATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAE  185 (334)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccc
Confidence            42  23   446788999999999999999999997 5999999999999954                           


Q ss_pred             ------------hhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696        194 ------------SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKY  261 (296)
Q Consensus       194 ------------l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~  261 (296)
                                  +.+|||+|.+|.|++++||+++.++|+++|.|++++.+...++++++++.+.+++++.+...      
T Consensus       186 ~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~------  259 (334)
T PRK11029        186 TKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTR------  259 (334)
T ss_pred             cccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------
Confidence                        46899999999999999999999999999999999999999999999999999999999888      


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhh
Q psy16696        262 LCKLLIKRAAILESEGIRAADINVAEGKRQAKIL  295 (296)
Q Consensus       262 ~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~~  295 (296)
                                 ..|+|++++++++|+|||+++++
T Consensus       260 -----------~~AeA~~~a~i~~aegeA~a~~~  282 (334)
T PRK11029        260 -----------TLAEAERQGRIMRGEGDAEAAKL  282 (334)
T ss_pred             -----------HHHHHHHHHHHHHhhhHHHHHHH
Confidence                       78999999999999999999764

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=5.2e-39  Score=296.32  Aligned_cols=203  Identities=23%  Similarity=0.372  Sum_probs=191.1

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHH
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE  152 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~  152 (296)
                      +|.+||+|||++.++++||+||++||+++|..++. +.+........++|+|++.|+|+++|+|||.||..|+|++.+++
T Consensus       103 ~E~gVV~rFGk~~~~l~PGLhfk~PfId~V~~vdv-~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~  181 (419)
T PRK10930        103 AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNV-EAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPD  181 (419)
T ss_pred             CeEEEEEECCcCcceeCCceEEecCceEEEEEEEe-EEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHH
Confidence            47999999999999999999999999999999864 65555555667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHHHHHHHH
Q psy16696        153 FAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQVEAERKK  229 (296)
Q Consensus       153 ~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~  229 (296)
                      ..|.+.++++||+++|++++++++++ |++|...+.+.+++.+++|  ||+|.+|.|++++||+++.++|++.+.|++++
T Consensus       182 ~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~  261 (419)
T PRK10930        182 DSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENE  261 (419)
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999985 9999999999999999987  99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696        230 RAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK  293 (296)
Q Consensus       230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~  293 (296)
                      ++.+.+|+++++..+.+|++++++.+                 .+|+|++++.+++|+|||++.
T Consensus       262 ~~~i~eAeayan~iip~A~gea~~ii-----------------~~AeAyr~~~i~~AeGda~rF  308 (419)
T PRK10930        262 QQYIREAEAYTNEVQPRANGQAQRIL-----------------EEARAYKAQTILEAQGEVARF  308 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHH
Confidence            99999999999999999999999999                 889999999999999999873

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=3.8e-38  Score=278.87  Aligned_cols=204  Identities=26%  Similarity=0.388  Sum_probs=185.0

Q ss_pred             HHHHhhhcCeeeEEecCccEEEeCcceeEEEEeecee------------EeeecCCcceeccCCcEEEEEEEEEEEEcCc
Q psy16696         74 QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKE------------IAIDVPQQSAITSDNVTLSIDGVLYLKINDP  141 (296)
Q Consensus        74 ~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~------------~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~  141 (296)
                      +.+|+++||+++++++||+||+|||++++..+++++.            .....+...++|+||++|++++++.|||.||
T Consensus        22 e~gVV~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~  101 (266)
T cd03404          22 ERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISDP  101 (266)
T ss_pred             ceEEeEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEEEEEEECCH
Confidence            7999999999999999999999999988765543221            1112223468999999999999999999999


Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHH
Q psy16696        142 YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEA  218 (296)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~a  218 (296)
                      ..++|+..+++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.+..|  ||+|++|.|++++||+++.++
T Consensus       102 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a  181 (266)
T cd03404         102 YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDA  181 (266)
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHH
Confidence            9999999999999999999999999999999999987 9999999999999999976  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhh
Q psy16696        219 MQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKI  294 (296)
Q Consensus       219 i~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~  294 (296)
                      |++++.|++++++.+.+|+++++..+..|++++++.+                 +.|+|++++.+++|+||+++++
T Consensus       182 ~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~-----------------~~A~a~~~~~~~~ae~~a~~~~  240 (266)
T cd03404         182 FDDVNKARQDRERLINEAEAYANEVVPKARGEAARII-----------------QEAEAYKEEVIAEAQGEAARFE  240 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-----------------HHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988                 8899999999999999998854

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=5.3e-38  Score=283.18  Aligned_cols=204  Identities=24%  Similarity=0.351  Sum_probs=184.1

Q ss_pred             HHHHhhhcCeeeEEe-------cCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc
Q psy16696         74 QAWVVERMGKYHRIL-------EPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY  146 (296)
Q Consensus        74 ~~~vv~r~G~~~~~~-------~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~  146 (296)
                      +.+|+++||++.++.       +||+||++||++++..++ ++.++++.++..++|+|+++|.|+++++|||.||..+++
T Consensus        27 e~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd-~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~d~~~~~~  105 (317)
T TIGR01932        27 ERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFD-AKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYL  105 (317)
T ss_pred             eEEEEEecCceeccccccccccCCCeEEEeccccEEEEee-eeEEEecCCcceeECCCCCEEEEEEEEEEEECCHHHHHH
Confidence            689999999998754       799999999999999995 699999998889999999999999999999999988877


Q ss_pred             cCC--C---HHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHH-----------------------------HHHHHHHHH
Q psy16696        147 GVE--D---PEFAITQLAQTTMRSELGKISLDKVFRE-RESL-----------------------------NESIVHAIN  191 (296)
Q Consensus       147 ~~~--~---~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i-----------------------------~~~v~~~l~  191 (296)
                      ++.  +   ++..|.+.+++++|+++|+|++++++++ |+++                             ...+.+.+.
T Consensus       106 ~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~  185 (317)
T TIGR01932       106 STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIAN  185 (317)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHH
Confidence            543  3   5677999999999999999999999975 6655                             567788888


Q ss_pred             HHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16696        192 NASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAA  271 (296)
Q Consensus       192 ~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~  271 (296)
                      +.+.+|||+|++|.|++++||+++.++|.+++.|++++.+...++++++++....+++++++..                
T Consensus       186 ~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~----------------  249 (317)
T TIGR01932       186 SQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRK----------------  249 (317)
T ss_pred             HHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            8999999999999999999999999999999999999999999999999999998888888888                


Q ss_pred             HHhhHHHHHHHHHhhccchhhhhh
Q psy16696        272 ILESEGIRAADINVAEGKRQAKIL  295 (296)
Q Consensus       272 ~~~Aea~~~~~~~~Aeaea~a~~~  295 (296)
                       +.|+|++++.+++|+|||+++++
T Consensus       250 -~~aeA~a~a~~~~Aegea~a~~~  272 (317)
T TIGR01932       250 -ILSEAYRTARIIKGEGDAEAAKI  272 (317)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHH
Confidence             77889999999999999998764

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=8.3e-38  Score=268.36  Aligned_cols=203  Identities=48%  Similarity=0.743  Sum_probs=185.8

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEeCcceeE-EEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILIPIIDKI-KYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP  151 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v-~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~  151 (296)
                      ++.+|+++||++.++++||+||++||++++ ..++ ++.+++++++..+.|+|+++|.+++++.|||.||.++++..+++
T Consensus         4 ge~~Vv~~~G~~~~~~~pG~~f~~P~~~~v~~~v~-~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~   82 (215)
T cd03403           4 YERGVVERLGKYHRTLGPGLHFIIPFIDRIAYKVD-LREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGVEDY   82 (215)
T ss_pred             ceEEEEEEcCcCccccCCcEEEEeccceEEEEEEe-eEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcCCCH
Confidence            468899999999999999999999999999 8885 69999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHH
Q psy16696        152 EFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRA  231 (296)
Q Consensus       152 ~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a  231 (296)
                      +..+.+.+++++|++++++++++++++|+.|.+.+++.+++.+.+|||+|++|.|++++||+++.++|++++.|++++++
T Consensus        83 ~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a  162 (215)
T cd03403          83 RYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRA  162 (215)
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhh
Q psy16696        232 AILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQA  292 (296)
Q Consensus       232 ~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a  292 (296)
                      .+.+|++++++.+..++++++....                ..+.+.+..+.+++.|++.+
T Consensus       163 ~i~~A~ge~~a~~~~aea~~~~~~~----------------~~~~~~~~~e~~~~~~~~~~  207 (215)
T cd03403         163 KIIEAEGERQAAILLAEAAKQAAIN----------------PAALQLRELETLEEIAKEAA  207 (215)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHccC----------------HHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999876430                24566666666666666554

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>KOG2620|consensus

Probab=100.00  E-value=3.6e-38  Score=263.91  Aligned_cols=211  Identities=63%  Similarity=0.908  Sum_probs=188.5

Q ss_pred             HHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccc--ccccCCCH
Q psy16696         74 QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYL--ASYGVEDP  151 (296)
Q Consensus        74 ~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~--~~~~~~~~  151 (296)
                      +++|+.||||+.++++||+||.+|+++++.++.+++...+..+.++..|+|++.|+++++++|||.||++  +.|+++||
T Consensus        16 ~a~VvER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dAsYgvenp   95 (301)
T KOG2620|consen   16 EAAVVERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDASYGVENP   95 (301)
T ss_pred             HhHHHHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccccccccCCH
Confidence            6999999999999999999999999999988766677777777888999999999999999999999998  99999999


Q ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHH
Q psy16696        152 EFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRA  231 (296)
Q Consensus       152 ~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a  231 (296)
                      +..+..+++..+|+.++++++|.++..|+.++..+.+.|++....||++|....|+||.||+.+.++|+....|++.+++
T Consensus        96 ~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krA  175 (301)
T KOG2620|consen   96 EYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRA  175 (301)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccch
Q psy16696        232 AILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKR  290 (296)
Q Consensus       232 ~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea  290 (296)
                      .+.++|++++.++.+|++++++.++..++.+      +..+..+.+++++.+..|++-+
T Consensus       176 ailesEger~~~InrAEGek~s~iL~seg~~------~qr~n~a~Gea~ail~~A~a~a  228 (301)
T KOG2620|consen  176 AILESEGERIAQINRAEGEKESKILASEGIA------RQRQNIADGEAEAILAFADAVA  228 (301)
T ss_pred             HHhhhhhhhHHhhhhhcchhhhHHhhhHHHH------HHHHHHHhhHHHHHHHHhhccc
Confidence            9999999999999999999999995443322      2223445555555555554443

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.2e-34  Score=243.86  Aligned_cols=165  Identities=18%  Similarity=0.260  Sum_probs=154.1

Q ss_pred             HHHHHhhhcCeeeEE-ecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH
Q psy16696         73 TQAWVVERMGKYHRI-LEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP  151 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~-~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~  151 (296)
                      ++.+|+++||++.++ .+||+||++||++. ..+ ++|.++++.++..+.|+|+++|.|+++++|||.||.+++|+++|+
T Consensus         8 ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~v-d~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~~v~~~   85 (219)
T cd03402           8 NQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRV-SLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVFNVDDY   85 (219)
T ss_pred             CeeEEEEEcCcCcccccCCceEEEeccceE-EEE-eeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHHHcCCH
Confidence            478999999999996 49999999999865 567 569999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHH-------hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHH
Q psy16696        152 EFAITQLAQTTMRSELGKISLDKVFR-------ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVE  224 (296)
Q Consensus       152 ~~~l~~~~~~~lr~vi~~~~~~el~~-------~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~  224 (296)
                      ...+...+++++|+++|+|+++++++       +|+++..++.+.+++.+..|||+|.+|+|+++.||+++.++|.++|+
T Consensus        86 ~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~  165 (219)
T cd03402          86 EEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQ  165 (219)
T ss_pred             HHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHH
Confidence            99999999999999999999999985       57999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy16696        225 AERKKRAAILESEGI  239 (296)
Q Consensus       225 Ae~~~~a~~~~Ae~~  239 (296)
                      |++...++...++++
T Consensus       166 Ae~~~~Ar~~~~~Ga  180 (219)
T cd03402         166 ASAIIAARRKIVEGA  180 (219)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999987776653

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=6.7e-33  Score=243.65  Aligned_cols=188  Identities=19%  Similarity=0.192  Sum_probs=166.5

Q ss_pred             HHHHHhhhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccccc-----c
Q psy16696         73 TQAWVVERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLAS-----Y  146 (296)
Q Consensus        73 ~~~~vv~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~-----~  146 (296)
                      ++.+|++|||++.+ +++||+||++||++++..++ .+.++++.++..+.|+||++|.++....|++.||..+.     |
T Consensus        11 ge~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~-vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y   89 (280)
T cd03406          11 GHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQ-VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNY   89 (280)
T ss_pred             CeEEEEEECCcccccccCCceEEecCCceEEEEEE-eEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHH
Confidence            37999999999865 88999999999999998885 48888888777789999999999975555555775432     4


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHH
Q psy16696        147 GVEDPEFAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQV  223 (296)
Q Consensus       147 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~  223 (296)
                      +.++....|.+.+++.+|+++|+++++++++ +|+++...+++.+++.+++|  ||+|.+|.|++++||+++.++| ++|
T Consensus        90 ~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM  168 (280)
T cd03406          90 TADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELM  168 (280)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHH
Confidence            5567888999999999999999999999998 69999999999999999987  9999999999999999999998 699


Q ss_pred             HHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy16696        224 EAERKKR--------AAILESEGIRAADINVAEGKRQAKILEAAKYL  262 (296)
Q Consensus       224 ~Ae~~~~--------a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~  262 (296)
                      .||+++.        +...+||+++...+.+|+++++...+.-+..-
T Consensus       169 ~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~  215 (280)
T cd03406         169 EAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKV  215 (280)
T ss_pred             HHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999        99999999999999999999998886555444

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-33  Score=248.35  Aligned_cols=185  Identities=43%  Similarity=0.698  Sum_probs=172.7

Q ss_pred             HHHHhhhcCeeeEEec-CccEEEeCc---ceeE-EEEeeceeEeeec-CCcceeccCCcEEEEEEEEEEEEcCccccccc
Q psy16696         74 QAWVVERMGKYHRILE-PGLNILIPI---IDKI-KYVQSLKEIAIDV-PQQSAITSDNVTLSIDGVLYLKINDPYLASYG  147 (296)
Q Consensus        74 ~~~vv~r~G~~~~~~~-pG~~~~~P~---~~~v-~~~~~~r~~~~~~-~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~  147 (296)
                      +.+++++||++.++.+ ||+||++||   ++.+ ..+ +++.++++. +++.+.|+|++.|.|+++++|||.||.+++++
T Consensus        28 ~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~-~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~~~~~~~  106 (291)
T COG0330          28 ERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRV-DLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYN  106 (291)
T ss_pred             ceEEEEEecceeeecCCCceEEEcCCccceeeeeeee-eeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCHHHHHHh
Confidence            5889999999999988 999999999   4444 444 568999999 78999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHH-HHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696        148 VEDPEFAITQLAQTTMRSELGKISLDKVFRERE-SLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE  226 (296)
Q Consensus       148 ~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~-~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae  226 (296)
                      +++++..+.+.+++.||+++|++++++++++|+ .+...+.+.+++.+++|||.|.+|.|+++.||+++..+|.+++.|+
T Consensus       107 v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Ae  186 (291)
T COG0330         107 VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAE  186 (291)
T ss_pred             cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999977 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696        227 RKKRAAILESEGIRAADINVAEGKRQAKILEAA  259 (296)
Q Consensus       227 ~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~  259 (296)
                      +++++.+.+|+++++..+.+|+++++...+.++
T Consensus       187 r~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~ae  219 (291)
T COG0330         187 RDKRAEILEAEGEAQAAILRAEGEAEAAIILAE  219 (291)
T ss_pred             HHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999988884443

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=1.5e-33  Score=238.47  Aligned_cols=183  Identities=15%  Similarity=0.222  Sum_probs=153.5

Q ss_pred             HHHHHhhhcCeeeE--EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCc-cccc---c
Q psy16696         73 TQAWVVERMGKYHR--ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP-YLAS---Y  146 (296)
Q Consensus        73 ~~~~vv~r~G~~~~--~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~-~~~~---~  146 (296)
                      ++++|+++||+...  +++||+||++||++++..++ ++.+++++.. .+.|+|+++|+++++++|++.+. ...+   +
T Consensus         8 g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~-~r~~~~~~~~-~~~t~d~~~V~v~~~v~y~v~~~~~~~~~~~~   85 (196)
T cd03401           8 GHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFD-VRARPRNIES-TTGSKDLQMVNITLRVLFRPDASQLPRIYQNL   85 (196)
T ss_pred             CcEEEEEEecCccccCccCCceEEEccccceeEEEE-eeeeEEEEee-cccCCCCeEEEEEEEEEEEeCHHHHHHHHHHh
Confidence            37999999998765  89999999999999999995 5899888753 57899999999999999999632 1112   3


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696        147 GVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE  226 (296)
Q Consensus       147 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae  226 (296)
                      +.++.+..|.+.+++.+|+++|+|++++++++|++|+..+.+.+++.+.+|||.|++|.|+||+||+++.++|++++.|+
T Consensus        86 ~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~  165 (196)
T cd03401          86 GEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQ  165 (196)
T ss_pred             CcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHH
Confidence            43445667999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696        227 RKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK  293 (296)
Q Consensus       227 ~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~  293 (296)
                      |++++..                   ..+                 ..|++++++.+++|+|||+++
T Consensus       166 q~~~~a~-------------------~~~-----------------~~a~~ea~~~~~~A~gea~a~  196 (196)
T cd03401         166 QEAERAK-------------------FVV-----------------EKAEQEKQAAVIRAEGEAEAA  196 (196)
T ss_pred             HHHHHHH-------------------HHH-----------------HHHHHHHHHHHHHhhhhhhcC
Confidence            8865531                   112                 456667777777777777663

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>KOG2621|consensus

Probab=99.97  E-value=8.3e-31  Score=222.32  Aligned_cols=208  Identities=33%  Similarity=0.539  Sum_probs=184.9

Q ss_pred             cccHhHHHHHHHHhhhccCCeeEecCCcchHHHHH--HHHHHhhhcCeeeE--EecCccEEEeCcceeEEEEeeceeEee
Q psy16696         38 SLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMV--TQAWVVERMGKYHR--ILEPGLNILIPIIDKIKYVQSLKEIAI  113 (296)
Q Consensus        38 ~~~va~~yi~~f~~l~~~~~~vi~p~~~~~~~~~v--~~~~vv~r~G~~~~--~~~pG~~~~~P~~~~v~~~~~~r~~~~  113 (296)
                      .+..-+..+..|+.|.-   .+-+|.+++.+.++|  -|++|++|+|++..  ..+||+.|++||+|++.++ ++|++++
T Consensus        27 ~~~~~~~~l~~~S~llv---i~TfP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kV-DLRt~sf  102 (288)
T KOG2621|consen   27 PLGACEWLLVILSFLLV---LMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKV-DLRTQSF  102 (288)
T ss_pred             CcchHHHHHHHHHHHHH---HHHhHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeee-eeeEEee
Confidence            34455555666665422   233688888888888  56899999999987  7799999999999999999 5899999


Q ss_pred             ecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHH
Q psy16696        114 DVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNA  193 (296)
Q Consensus       114 ~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~  193 (296)
                      ++++++++|+|.+.|.|+++|+|||.||...+.+++|.....+-+.+..||+++|+.++.+++++|+.|+..+...|.+.
T Consensus       103 nVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~  182 (288)
T KOG2621|consen  103 NVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEA  182 (288)
T ss_pred             cCCHHHHhcccceEEEeceEEEEEecCHHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16696        194 SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEG  249 (296)
Q Consensus       194 l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a  249 (296)
                      ...|||+|++|.|+||++|.++++++.....|.+++++++..||++..+....+++
T Consensus       183 T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~as~al~~a  238 (288)
T KOG2621|consen  183 TEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKASEALKEA  238 (288)
T ss_pred             ccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999888888887765554443

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.97  E-value=2.2e-29  Score=209.49  Aligned_cols=167  Identities=28%  Similarity=0.467  Sum_probs=121.5

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCC--cceeccCCcEEEEEEEEEEEEcCcccccccC--
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQ--QSAITSDNVTLSIDGVLYLKINDPYLASYGV--  148 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~--~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~--  148 (296)
                      ++++|+++||++..+++||+||++||++++..++ ++.++++++.  ..+.|+|+.++.+++++.|||.|+..++...  
T Consensus         6 g~~~V~~~~G~~~~~~~~G~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~~~~~~   84 (179)
T PF01145_consen    6 GEVGVVVRFGKVKDVLGPGLHFVIPFIQKVYVYP-TRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFVQNYEG   84 (179)
T ss_dssp             --------------------------EEE--S---SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCCCCCSS
T ss_pred             CEEEEEEECCeEeEEECCCeEEEeCCcCeEEEEe-CEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHHHhhhc
Confidence            5799999999999999999999999999999885 5899999987  7899999999999999999998887777666  


Q ss_pred             --CCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696        149 --EDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE  226 (296)
Q Consensus       149 --~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae  226 (296)
                        .++...|++.+++++|++++++++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.++++|+++.+++.+++.++
T Consensus        85 ~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~  164 (179)
T PF01145_consen   85 GEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAE  164 (179)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHH
Confidence              678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHHH
Q psy16696        227 RKK-RAAILESEGIR  240 (296)
Q Consensus       227 ~~~-~a~~~~Ae~~~  240 (296)
                      +++ ++.+.+|++++
T Consensus       165 ~~~~~~~~~~a~~ea  179 (179)
T PF01145_consen  165 QEAQQAEIERAEAEA  179 (179)
T ss_dssp             HHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCC
Confidence            998 66666665543

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>smart00244 PHB prohibitin homologues

Probab=99.96  E-value=4.4e-29  Score=204.03  Aligned_cols=149  Identities=48%  Similarity=0.780  Sum_probs=140.3

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHH
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE  152 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~  152 (296)
                      ++++|+++||++.++++||+||++||++++..++ ++.+++.++...+.|+|++++++++++.|||.||..++++..+++
T Consensus         9 g~~~v~~~~G~~~~~~~pG~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~~~~~~~~   87 (160)
T smart00244        9 GEAGVVERLGRVLRVLGPGLHFLIPFIDRVKKVD-LRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAVYRVLDAD   87 (160)
T ss_pred             cEEEEEEecCccccccCCCEEEEecceeEEEEEe-eEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHhhhcCCHH
Confidence            4788999999999999999999999999999995 599999998888999999999999999999999998888887777


Q ss_pred             -HHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696        153 -FAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQ  222 (296)
Q Consensus       153 -~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~  222 (296)
                       ..+.+.+++++|+++++++++++++ +|+++.+.+.+.+++.+++||++|.+|.|+++++|+++.++++++
T Consensus        88 ~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k  159 (160)
T smart00244       88 YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ  159 (160)
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence             5899999999999999999999998 699999999999999999999999999999999999999999865

prohibitin homologues

>KOG3090|consensus

Probab=99.89  E-value=9.7e-23  Score=167.49  Aligned_cols=197  Identities=13%  Similarity=0.196  Sum_probs=165.8

Q ss_pred             EecCCcchHHHHHHHHHHh-hhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEE
Q psy16696         60 IVPSDANNIASMVTQAWVV-ERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLK  137 (296)
Q Consensus        60 i~p~~~~~~~~~v~~~~vv-~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yr  137 (296)
                      .+..+++++.|  |+++++ .|+|.+.. +++.|.||.+|||++...+| .|-++..+.+ ..-|+|-++|++...|--|
T Consensus        33 ~v~~sl~nVdg--GHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYD-vRarP~~i~S-~tGskDLQmVnI~lRVLsR  108 (290)
T KOG3090|consen   33 GVTQSLYNVDG--GHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYD-VRARPRLISS-PTGSKDLQMVNIGLRVLSR  108 (290)
T ss_pred             eecceeEeecC--CceEEEEeccccchhccccCCceEeeeccccceeee-eccCcccccC-CCCCcceeEEEeeeEEecC
Confidence            34455555554  566655 47888776 89999999999999999996 4888887754 4789999999999988877


Q ss_pred             EcCc---c-cccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCh
Q psy16696        138 INDP---Y-LASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPS  213 (296)
Q Consensus       138 I~d~---~-~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~  213 (296)
                      ....   . +...+.++.+..+.+++.+.|+.++++|+.+++++.|+.++..+++.|.++..++.|-+++|.|+.++|.+
T Consensus       109 P~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~  188 (290)
T KOG3090|consen  109 PMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGK  188 (290)
T ss_pred             CChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCH
Confidence            6421   1 12245566778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy16696        214 RVNEAMQMQVEAERKKRAA---ILESEGIRAADINVAEGKRQAKILEAAK  260 (296)
Q Consensus       214 ~~~~ai~~~~~Ae~~~~a~---~~~Ae~~~~~~~~~A~a~a~~~~~ea~~  260 (296)
                      ++..+++.++.|.|++++.   +.+|+.+++..+.+|+++++.+.+-.++
T Consensus       189 efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeA  238 (290)
T KOG3090|consen  189 EFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA  238 (290)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH
Confidence            9999999999999999886   4578999999999999999988864443

>KOG3083|consensus

Probab=99.86  E-value=4.7e-22  Score=163.33  Aligned_cols=191  Identities=16%  Similarity=0.240  Sum_probs=157.8

Q ss_pred             ecCCcchHHHHHHHHHHhh-hcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEE
Q psy16696         61 VPSDANNIASMVTQAWVVE-RMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKI  138 (296)
Q Consensus        61 ~p~~~~~~~~~v~~~~vv~-r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI  138 (296)
                      ++..+.++.+  ++++|++ ||-.+.. +.+.|.||.+||.++...+|. |..+..++. ..-|||-++|++...+.||.
T Consensus        23 ~~s~ly~vdg--g~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~-rs~p~~v~~-itGskdLQ~VniTlril~rp   98 (271)
T KOG3083|consen   23 VNSALYNVDG--GHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDC-RSRPRNVPV-ITGSKDLQNVNITLRILFRP   98 (271)
T ss_pred             hhhhhcccCC--CceeEEeecccchhhhcccCCceeeeeeccCcEEEec-cCCCccccc-ccCchhhhcccceEEEEecc
Confidence            3444444443  5666664 6655555 889999999999999999864 777777744 36799999999999999987


Q ss_pred             cCc---cccc-ccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChH
Q psy16696        139 NDP---YLAS-YGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSR  214 (296)
Q Consensus       139 ~d~---~~~~-~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~  214 (296)
                      ...   .-|. .+.++.+..|.++....|++++++++..++++.|+.++..+.+.+.+....+||.+++|.|++++|-.+
T Consensus        99 ~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkE  178 (271)
T KOG3083|consen   99 VVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKE  178 (271)
T ss_pred             cccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHH
Confidence            522   2222 345566777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHH
Q psy16696        215 VNEAMQMQVEAERKKRAAI---LESEGIRAADINVAEGKRQAKI  255 (296)
Q Consensus       215 ~~~ai~~~~~Ae~~~~a~~---~~Ae~~~~~~~~~A~a~a~~~~  255 (296)
                      +.++++.|+.|+|++++..   .+|+.++.+.++.|+++.+.+.
T Consensus       179 Ft~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~  222 (271)
T KOG3083|consen  179 FTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAE  222 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHH
Confidence            9999999999999998874   5678888888888888887766

>KOG2962|consensus

Probab=99.85  E-value=8.3e-20  Score=150.94  Aligned_cols=214  Identities=20%  Similarity=0.233  Sum_probs=165.5

Q ss_pred             HHHHHhhhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEE--EEEEcCcccc---cc
Q psy16696         73 TQAWVVERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVL--YLKINDPYLA---SY  146 (296)
Q Consensus        73 ~~~~vv~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v--~yrI~d~~~~---~~  146 (296)
                      |+.+|.+|-|.... +.+||+|+.+||+.++..+.+ ..|+-.+.+..|.|+.|+.+.++-.-  ++-..|....   .|
T Consensus        29 GHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQv-TLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vydiv~NY  107 (322)
T KOG2962|consen   29 GHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQV-TLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNY  107 (322)
T ss_pred             CceEEEEecceeeeccCCCCcEEEeeeeeceeeeEE-EeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHHHHHHc
Confidence            67889999999887 889999999999999988864 88898999999999999999988432  2222222111   15


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHH
Q psy16696        147 GVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQV  223 (296)
Q Consensus       147 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~  223 (296)
                      .+++...++.+-+...+.+.|+.+++.++|-+ .++|.++++..|+.+|..+  |++|..|+++....|+.+.+.++ .|
T Consensus       108 tvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E-~M  186 (322)
T KOG2962|consen  108 TVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFE-LM  186 (322)
T ss_pred             ccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHH-HH
Confidence            66677788999999999999999999999977 9999999999999999987  99999999999999999999887 55


Q ss_pred             HHHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhhcc
Q psy16696        224 EAERK--------KRAAILESEGIRAADINVAEGKRQAKILEAAKYL-CKLLIKRAAILESEGIRAADINVAEG  288 (296)
Q Consensus       224 ~Ae~~--------~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~-~~~~~~~~~~~~Aea~~~~~~~~Aea  288 (296)
                      .+|..        ..-...+||.++..++++|+..++...+--+... +++.++.-..++.+++-.++..+|.+
T Consensus       187 E~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~LarekskADA  260 (322)
T KOG2962|consen  187 EAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSKADA  260 (322)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhhccH
Confidence            55443        2333456788888888888888877665444433 55555555555555555555444443

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.84  E-value=1.6e-19  Score=168.60  Aligned_cols=177  Identities=23%  Similarity=0.394  Sum_probs=156.6

Q ss_pred             CeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccccc------ccCC----CH
Q psy16696         82 GKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLAS------YGVE----DP  151 (296)
Q Consensus        82 G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~------~~~~----~~  151 (296)
                      |.-.+++.+|+||++|+++...++ +++..++++....++|+||.|++++++.+.+|.|....+      |+..    +.
T Consensus        58 g~~~~vV~gGg~~v~Pi~q~~~r~-~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l  136 (548)
T COG2268          58 GGGQKVVRGGGAIVMPIFQTIERM-SLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDL  136 (548)
T ss_pred             cCCccEEecCceEEecceeeeEEe-eeeeeeeeeeeeeeEecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHH
Confidence            444468899999999999999999 579999999877899999999999999999998763322      3333    45


Q ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCC-------hHHHHHHHHHHH
Q psy16696        152 EFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLP-------SRVNEAMQMQVE  224 (296)
Q Consensus       152 ~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p-------~~~~~ai~~~~~  224 (296)
                      ...+...++++||.+++++|+.+|+.+|..|.+.+.+.+..+|.+.|+.|+++.|+|+..+       ..|.++.+.+.+
T Consensus       137 ~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i  216 (548)
T COG2268         137 EQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRI  216 (548)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHH
Confidence            6678889999999999999999999999999999999999999999999999999999998       999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696        225 AERKKRAAILESEGIRAADINVAEGKRQAKILEAA  259 (296)
Q Consensus       225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~  259 (296)
                      ++..+++.+.+++.+++..+..++++.+..+.+.+
T Consensus       217 ~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~  251 (548)
T COG2268         217 AQVLQDAEIAENEAEKETEIAIAEANRDAKLVELE  251 (548)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhh
Confidence            99999999999999999999998888877776555

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.83  E-value=4.7e-20  Score=157.22  Aligned_cols=149  Identities=21%  Similarity=0.318  Sum_probs=123.2

Q ss_pred             HHHHHhhhcCeeeEEecCccEEEe----Ccc---------------eeEEEEeeceeEeeec--CCc----ceeccCCcE
Q psy16696         73 TQAWVVERMGKYHRILEPGLNILI----PII---------------DKIKYVQSLKEIAIDV--PQQ----SAITSDNVT  127 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~~~----P~~---------------~~v~~~~~~r~~~~~~--~~~----~~~T~D~~~  127 (296)
                      ++.+|++++|++.++++||.|+.+    |++               ..+..++ ++.+....  .+.    ...|+|+++
T Consensus        22 ~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~  100 (207)
T cd03408          22 GQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFN-TRVFTDLLWGTPAPVFGRDSEFGGVP  100 (207)
T ss_pred             CcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEE-CEEEeccccCCCCCeeeeCCccceEE
Confidence            378999999999999888888666    433               2355664 36555421  111    245788999


Q ss_pred             EEEEEEEEEEEcCcccccccC---------CCHHHHHHHHHHHHHHHHHccCCHHHHHHh--HHHHHHHHHHHHHHHhhc
Q psy16696        128 LSIDGVLYLKINDPYLASYGV---------EDPEFAITQLAQTTMRSELGKISLDKVFRE--RESLNESIVHAINNASEA  196 (296)
Q Consensus       128 v~v~~~v~yrI~d~~~~~~~~---------~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~v~~~l~~~l~~  196 (296)
                      |.+++++.|||.||..++.+.         ++....+.+.+++++|++++++++++++.+  |++|++.+++.+.+.+.+
T Consensus       101 v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~  180 (207)
T cd03408         101 LRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFAS  180 (207)
T ss_pred             EEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999998877543         246678999999999999999999999977  999999999999999999


Q ss_pred             cCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696        197 WGITCLRYEIRDIKLPSRVNEAMQMQ  222 (296)
Q Consensus       197 ~Gi~i~~v~I~~i~~p~~~~~ai~~~  222 (296)
                      |||+|.+|.|++|++|+++.+++.++
T Consensus       181 ~Gi~i~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         181 FGLELVSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             cCcEEEEEEEEeecCCHHHHHHHHhh
Confidence            99999999999999999999998854

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2668|consensus

Probab=99.82  E-value=2.8e-19  Score=155.88  Aligned_cols=178  Identities=16%  Similarity=0.200  Sum_probs=148.3

Q ss_pred             HHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEc--Cccc--------c
Q psy16696         75 AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIN--DPYL--------A  144 (296)
Q Consensus        75 ~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~--d~~~--------~  144 (296)
                      ..+++.+|.-...+-+| .|.||| +++..+ ++.++++++....+.|+.|+|+.|.++.+..|.  |+..        |
T Consensus        10 ~l~itg~g~~~~~lv~~-~wvf~w-q~~q~~-~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~~A~e~f   86 (428)
T KOG2668|consen   10 YLAITGGGIEDIKLVKK-SWVFPW-QQCTVF-DVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLLYACEQF   86 (428)
T ss_pred             eEEeecccccCceeccc-ceeeee-eeeeEE-eecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHHHHHHHh
Confidence            33444455544445454 367788 899999 579999999988899999999999999888875  4322        1


Q ss_pred             cc-cCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCh--HHHHHHHH
Q psy16696        145 SY-GVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPS--RVNEAMQM  221 (296)
Q Consensus       145 ~~-~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~--~~~~ai~~  221 (296)
                      +. +..+....+...+++++|.++++||++++|.+|.+|...+.+-...+|..+||+|.+..|+|+.+.+  +|..++..
T Consensus        87 lgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGk  166 (428)
T KOG2668|consen   87 LGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGK  166 (428)
T ss_pred             cCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhh
Confidence            11 1234666788899999999999999999999999999999999999999999999999999999877  79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696        222 QVEAERKKRAAILESEGIRAADINVAEGKRQAKI  255 (296)
Q Consensus       222 ~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~  255 (296)
                      ..+++..+++.+..||++++.=+.+|.+..+..-
T Consensus       167 a~taev~rdArIgvAEAk~eaGikEa~~~~~~~a  200 (428)
T KOG2668|consen  167 ATTAEVARDARIGVAEAKREAGIKEATGLTEQNA  200 (428)
T ss_pred             HHHHHHHhhcccchHHhhhhcchhhhhHHHHHhH
Confidence            9999999999999999999988888888776543

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.81  E-value=1.8e-19  Score=142.07  Aligned_cols=115  Identities=18%  Similarity=0.350  Sum_probs=104.3

Q ss_pred             eceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc-------c--CCCHHHHHHHHHHHHHHHHHccCCHHHHHH
Q psy16696        107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY-------G--VEDPEFAITQLAQTTMRSELGKISLDKVFR  177 (296)
Q Consensus       107 ~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~-------~--~~~~~~~l~~~~~~~lr~vi~~~~~~el~~  177 (296)
                      ++|.++++++++.++|+|++++.|++++.|||.||..++.       +  ..+....+.+.+++++|+++|+|+++++++
T Consensus         3 ~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~~   82 (128)
T cd03399           3 SLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYE   82 (128)
T ss_pred             cccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5789999999999999999999999999999999875442       1  134677889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHH
Q psy16696        178 ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQM  221 (296)
Q Consensus       178 ~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~  221 (296)
                      +|++|..++.+.++..+.+|||+|.+|.|++|++|++|.+++.+
T Consensus        83 ~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~  126 (128)
T cd03399          83 DRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD  126 (128)
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence            99999999999999999999999999999999999999888764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.77  E-value=5.2e-18  Score=132.97  Aligned_cols=115  Identities=16%  Similarity=0.314  Sum_probs=99.2

Q ss_pred             eceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccccc----ccCCCHHHHHHHHHHHHHHHHHccCCHHHHHH-hHHH
Q psy16696        107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLAS----YGVEDPEFAITQLAQTTMRSELGKISLDKVFR-ERES  181 (296)
Q Consensus       107 ~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~----~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~  181 (296)
                      ++|.++.+. +..++|+||++|.++++++|||.++..+.    ++....+..|.+.+++++|+++|+|+++++++ +|++
T Consensus         4 ~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~   82 (124)
T cd03400           4 STRLQEVDE-KIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE   82 (124)
T ss_pred             cceeeeccc-ceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence            346777665 45699999999999999999997554321    22333556799999999999999999999996 6999


Q ss_pred             HHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696        182 LNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQ  222 (296)
Q Consensus       182 i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~  222 (296)
                      |.+.+.+.+++.+.+|||+|.+|.|++++||+++.+++++|
T Consensus        83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999876

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.71  E-value=3.5e-16  Score=121.10  Aligned_cols=114  Identities=36%  Similarity=0.647  Sum_probs=102.4

Q ss_pred             eeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH--HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHH
Q psy16696        109 KEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP--EFAITQLAQTTMRSELGKISLDKVFRERESLNESI  186 (296)
Q Consensus       109 r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~--~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v  186 (296)
                      +..+.+.....+.|+||.++.+++++.|+|.||..+++....+  ...+.+.+.+++|+++++++++++.++|.+|.+.+
T Consensus         5 ~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v   84 (121)
T cd02106           5 RRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEV   84 (121)
T ss_pred             eeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHH
Confidence            4555666677899999999999999999999987555554443  47899999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696        187 VHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQ  222 (296)
Q Consensus       187 ~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~  222 (296)
                      ++.+...+.+||++|.+|.|+++++|+++.++++++
T Consensus        85 ~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          85 REALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            999999999999999999999999999999999865

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.38  E-value=1.6e-11  Score=104.33  Aligned_cols=149  Identities=22%  Similarity=0.320  Sum_probs=114.6

Q ss_pred             HHHHHhhhcCeeeEEecCccEE-------------------EeCcceeEEEEeeceeE-eeecCCc-ce--eccC--CcE
Q psy16696         73 TQAWVVERMGKYHRILEPGLNI-------------------LIPIIDKIKYVQSLKEI-AIDVPQQ-SA--ITSD--NVT  127 (296)
Q Consensus        73 ~~~~vv~r~G~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~r~~-~~~~~~~-~~--~T~D--~~~  127 (296)
                      +|.+|+++-|++..+.+||.|-                   ..||-..|+.++. +.. ...+... .+  ...+  .++
T Consensus        22 gQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~-~~~~~~kwGT~~pi~~~D~~~~~v~  100 (211)
T PF13421_consen   22 GQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNT-KEITNIKWGTPNPIPYRDPEYGPVR  100 (211)
T ss_pred             CCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEEC-eEecCCccCCCCCeeecCCCCCcEE
Confidence            3788999999999999999993                   2355566777743 443 3344322 12  2222  467


Q ss_pred             EEEEEEEEEEEcCcccccc---------cCCCHHHHHHHHHHHHHHHHHcc--CCHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy16696        128 LSIDGVLYLKINDPYLASY---------GVEDPEFAITQLAQTTMRSELGK--ISLDKVFRERESLNESIVHAINNASEA  196 (296)
Q Consensus       128 v~v~~~v~yrI~d~~~~~~---------~~~~~~~~l~~~~~~~lr~vi~~--~~~~el~~~R~~i~~~v~~~l~~~l~~  196 (296)
                      |...++..|||.||..|+.         ..++....+++.+...+.+.+++  +++.+|..+-.+|++.+++.+++.+..
T Consensus       101 lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~~~~  180 (211)
T PF13421_consen  101 LRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPEFER  180 (211)
T ss_pred             EEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7888899999999977662         23345566777777777777764  789999999999999999999999999


Q ss_pred             cCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696        197 WGITCLRYEIRDIKLPSRVNEAMQMQ  222 (296)
Q Consensus       197 ~Gi~i~~v~I~~i~~p~~~~~ai~~~  222 (296)
                      +||+|.++.|.+|++|++..+.+.++
T Consensus       181 ~Gi~l~~f~I~~i~~pee~~~~i~~~  206 (211)
T PF13421_consen  181 YGIELVDFGIESISFPEEVQKAIDKR  206 (211)
T ss_pred             cCcEEEEEEEEeecCCHHHHHHHHHH
Confidence            99999999999999999999998854

>KOG2620|consensus

Probab=99.14  E-value=6.8e-11  Score=100.24  Aligned_cols=77  Identities=36%  Similarity=0.427  Sum_probs=73.1

Q ss_pred             CchHHHHHHHHHHHhHHhHHHHHHHhcccCccchhcccHhHHHHHHHHhhhccCCeeEecCCcchHHHHHHHHHHhh
Q psy16696          3 TTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVE   79 (296)
Q Consensus         3 ~~~~a~~~~~~a~a~a~~~~~~~~a~~~~g~~~a~~~~va~~yi~~f~~l~~~~~~vi~p~~~~~~~~~v~~~~vv~   79 (296)
                      +.|+|++|+..|++++.++.+++-.+.+.||.+|++|+++++||.+|++|++.++++++|.+.+++.+|+.|..-++
T Consensus       213 a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQa~~~~  289 (301)
T KOG2620|consen  213 ADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQALNGY  289 (301)
T ss_pred             HhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999976443

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.90  E-value=1.8e-08  Score=86.57  Aligned_cols=149  Identities=16%  Similarity=0.268  Sum_probs=111.9

Q ss_pred             HHHHhhhcCeeeEEe-cCccE-------------------EEeCcceeEEEEeeceeEe-eecC-Ccceecc-----CCc
Q psy16696         74 QAWVVERMGKYHRIL-EPGLN-------------------ILIPIIDKIKYVQSLKEIA-IDVP-QQSAITS-----DNV  126 (296)
Q Consensus        74 ~~~vv~r~G~~~~~~-~pG~~-------------------~~~P~~~~v~~~~~~r~~~-~~~~-~~~~~T~-----D~~  126 (296)
                      +-+++..-|++..+. ++|.+                   |..|+-+.|+.++ ++.+. +.+. +..+.-.     .+.
T Consensus        48 qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvn-tqe~~girwGT~qpin~~dn~~~g~l  126 (345)
T COG4260          48 QMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVN-TQEIKGIRWGTPQPINYFDNFYNGEL  126 (345)
T ss_pred             ceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEe-cceecceecCCCCCeeccccccccee
Confidence            455666678887754 47765                   2355667777774 45555 4443 2222222     357


Q ss_pred             EEEEEEEEEEEEcCccccc---------ccCCCHHHHHHHHHHHHHHHHHccCC--HHHHHHhHHHHHHHHHHHHHHHhh
Q psy16696        127 TLSIDGVLYLKINDPYLAS---------YGVEDPEFAITQLAQTTMRSELGKIS--LDKVFRERESLNESIVHAINNASE  195 (296)
Q Consensus       127 ~v~v~~~v~yrI~d~~~~~---------~~~~~~~~~l~~~~~~~lr~vi~~~~--~~el~~~R~~i~~~v~~~l~~~l~  195 (296)
                      ++...++..|+|.||..++         |.+++.++.+-+.+.++|...|.++.  +..|-.+--+++..+.+.|.+.+.
T Consensus       127 ~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~  206 (345)
T COG4260         127 FLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWT  206 (345)
T ss_pred             EEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHH
Confidence            7888999999999997654         44566777788888888888887764  445557889999999999999999


Q ss_pred             ccCeEEEEEEEeecCCChHHHHHHHHHH
Q psy16696        196 AWGITCLRYEIRDIKLPSRVNEAMQMQV  223 (296)
Q Consensus       196 ~~Gi~i~~v~I~~i~~p~~~~~ai~~~~  223 (296)
                      .+|..|++|.|.+|++|++.+..|..+.
T Consensus       207 q~Gm~v~sfqvaSisypde~Q~lin~r~  234 (345)
T COG4260         207 QYGMAVDSFQVASISYPDESQALINMRN  234 (345)
T ss_pred             hhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence            9999999999999999999999988654

>PTZ00491 major vault protein; Provisional

Probab=98.86  E-value=3.2e-07  Score=90.25  Aligned_cols=213  Identities=14%  Similarity=0.164  Sum_probs=131.7

Q ss_pred             CeeeEEecCccEEEeCcceeEEEEe-e---------ceeEeeecCC------cceeccCCcEEEEEEEEEEEEc----Cc
Q psy16696         82 GKYHRILEPGLNILIPIIDKIKYVQ-S---------LKEIAIDVPQ------QSAITSDNVTLSIDGVLYLKIN----DP  141 (296)
Q Consensus        82 G~~~~~~~pG~~~~~P~~~~v~~~~-~---------~r~~~~~~~~------~~~~T~D~~~v~v~~~v~yrI~----d~  141 (296)
                      ++-.-+.+|-+.+.-|- +.+..+. |         ++...+.+++      ..+-|+|...+.+..+.+|...    ||
T Consensus       481 ~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~l~LsYnW~F~v~~~d~  559 (850)
T PTZ00491        481 KKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLALQLSYNWYFDVTDGNP  559 (850)
T ss_pred             CceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEEEEEEEEEEEecCCCCh
Confidence            44334778888887775 3333320 0         1111122222      2367999999999999999986    45


Q ss_pred             c--cccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHH--------hhccCeEEEEEEEeecC
Q psy16696        142 Y--LASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNA--------SEAWGITCLRYEIRDIK  210 (296)
Q Consensus       142 ~--~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~--------l~~~Gi~i~~v~I~~i~  210 (296)
                      .  ...|++.|+-...-..+.+-+|..++..++++++.+ -.-|.+.+.....+.        +...|+.|.+|.|+++.
T Consensus       560 ~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvE  639 (850)
T PTZ00491        560 EDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVE  639 (850)
T ss_pred             hhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeee
Confidence            3  567999999999999999999999999999999976 444455555522221        24569999999999999


Q ss_pred             CCh-HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy16696        211 LPS-RVNEAMQMQ-------------VEAERKKRAAILESEGIRAADI--NVAEGKRQAKI-LEAAKYLCKLLIKRAAIL  273 (296)
Q Consensus       211 ~p~-~~~~ai~~~-------------~~Ae~~~~a~~~~Ae~~~~~~~--~~A~a~a~~~~-~ea~~~~~~~~~~~~~~~  273 (296)
                      |-+ ...+++.+-             ..|+++++....+|++.-+.++  .+|+++..+.. ++.++.-++-...=++..
T Consensus       640 pvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~a  719 (850)
T PTZ00491        640 PVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRA  719 (850)
T ss_pred             ecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHHH
Confidence            844 455554332             2344455555555665444443  44444443332 344433322222333445


Q ss_pred             hhHHHHHHHHHhhccchhhhhh
Q psy16696        274 ESEGIRAADINVAEGKRQAKIL  295 (296)
Q Consensus       274 ~Aea~~~~~~~~Aeaea~a~~~  295 (296)
                      +|+|.+++..+++|++-+.+++
T Consensus       720 ~a~a~aea~~ie~e~~v~~a~l  741 (850)
T PTZ00491        720 EALAEAEARLIEAEAEVEQAEL  741 (850)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHh
Confidence            6666666666666666555544

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=97.65  E-value=0.0014  Score=56.71  Aligned_cols=107  Identities=16%  Similarity=0.274  Sum_probs=82.2

Q ss_pred             ceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHH
Q psy16696        108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIV  187 (296)
Q Consensus       108 ~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~  187 (296)
                      ..+..++.|......+||..+.+.+.+..|-+  ...+.+....+..+.+.-++.+..+-+.-+..+++.+-+.|+..+.
T Consensus       122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaN--i~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL  199 (316)
T PF12127_consen  122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN--IDRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVL  199 (316)
T ss_pred             cCCeeecCcchhhhhcCCeEEEEEEEEEEEec--HHHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHH
Confidence            35566677777788999999998888888862  2334555677888888999999999999999999999999998886


Q ss_pred             HHHHHHhh-ccCeEEEEEEEeecCCChHHHHHH
Q psy16696        188 HAINNASE-AWGITCLRYEIRDIKLPSRVNEAM  219 (296)
Q Consensus       188 ~~l~~~l~-~~Gi~i~~v~I~~i~~p~~~~~ai  219 (296)
                      +.   -|+ .--++|.|+.|-|++.-.++-..+
T Consensus       200 ~k---gLDagTAFeIlSIDIaDidVG~NIGA~L  229 (316)
T PF12127_consen  200 EK---GLDAGTAFEILSIDIADIDVGENIGAKL  229 (316)
T ss_pred             hh---CCCcCceeEEEEeeeeccccchhhchhh
Confidence            54   333 346899999999999876654433

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=97.27  E-value=0.0037  Score=53.97  Aligned_cols=107  Identities=14%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             ceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHH
Q psy16696        108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIV  187 (296)
Q Consensus       108 ~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~  187 (296)
                      ..+..++.|......+||..+.+.+.+..|-+  ...+.+....+..+.+.-++.+..+-+.-+..+++.+-+.|+..+.
T Consensus       127 VnPkVI~~P~i~aVAkdGIql~~kARVTVRaN--i~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL  204 (316)
T PRK13665        127 VNPKVIETPFIAAVAKDGIEVKAKARVTVRAN--IDRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTVL  204 (316)
T ss_pred             cCCeeecCCcchhhcccCeEEEEEEEEEeehh--HHHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHHH
Confidence            35666777777788999999988888877742  2223344455556667777788888888899999999999987664


Q ss_pred             HHHHHHhhc-cCeEEEEEEEeecCCChHHHHHH
Q psy16696        188 HAINNASEA-WGITCLRYEIRDIKLPSRVNEAM  219 (296)
Q Consensus       188 ~~l~~~l~~-~Gi~i~~v~I~~i~~p~~~~~ai  219 (296)
                      +   +-|+. --++|.|+.|-|++.-.++-..+
T Consensus       205 ~---kGLDagTAFeIlSIDIADvdVG~NIGA~L  234 (316)
T PRK13665        205 S---KGLDAGTAFEILSIDIADVDVGKNIGAKL  234 (316)
T ss_pred             h---ccCCcCceeEEEEEeeeccccchhhchhh
Confidence            4   33443 36899999999999877655444

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=97.19  E-value=0.0013  Score=58.12  Aligned_cols=73  Identities=14%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             CCchHHHHHHHHHHHhHHhHHHHHHHhcccCccchhcccHhHHHHHHHHhhhccC-CeeEecCCcchHHHHHHH
Q psy16696          2 CTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTN-NTLIVPSDANNIASMVTQ   74 (296)
Q Consensus         2 ~~~~~a~~~~~~a~a~a~~~~~~~~a~~~~g~~~a~~~~va~~yi~~f~~l~~~~-~~vi~p~~~~~~~~~v~~   74 (296)
                      ++.|+|+++...|++.++.+..+.++.....++.+..+.+...|++++..++... .++++|+...++.+++.+
T Consensus       187 ~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~kviv~p~~~~~~~~~~~~  260 (262)
T cd03407         187 QGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSSTVVFRPHGPGGAQDIYAQ  260 (262)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCCCEEEecCCCccHHHHHHh
Confidence            3567888888888888888888888875456677778889999999999998544 557889998888776654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=96.46  E-value=0.028  Score=42.58  Aligned_cols=93  Identities=10%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             ceeccCCcEEEEEEEEEEEEcC----c--ccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHH-HHHHHH---
Q psy16696        119 SAITSDNVTLSIDGVLYLKIND----P--YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESL-NESIVH---  188 (296)
Q Consensus       119 ~~~T~D~~~v~v~~~v~yrI~d----~--~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i-~~~v~~---  188 (296)
                      .+-|+|...+.+..+.+|.-.-    |  ....|++.|+-...-..+.+-+|..++..+.++++.+-..+ ...+..   
T Consensus        10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~   89 (118)
T PF11978_consen   10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE   89 (118)
T ss_dssp             EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred             EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence            4679999999999999998752    2  35679999999999999999999999999999999764333 333211   


Q ss_pred             --HHHH--HhhccCeEEEEEEEeecCC
Q psy16696        189 --AINN--ASEAWGITCLRYEIRDIKL  211 (296)
Q Consensus       189 --~l~~--~l~~~Gi~i~~v~I~~i~~  211 (296)
                        .+++  .+...|+.|.+|.|+++.|
T Consensus        90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp  116 (118)
T PF11978_consen   90 NGEVRDGLRFPANNLVITSVDVQSVEP  116 (118)
T ss_dssp             -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred             CCCccceeEEcCCCeEEEEEeeeEecc
Confidence              1111  1235699999999999875

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=93.96  E-value=1.8  Score=35.16  Aligned_cols=81  Identities=10%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             CcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEE
Q psy16696        125 NVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCL  202 (296)
Q Consensus       125 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~  202 (296)
                      +....+.+.+.|++.|....- .++    .=.+.+++.+...+++.|.++|.+  +++.+..++++.++..|..-+ .|.
T Consensus        76 ~~~~~v~i~i~l~~~n~~~~~-el~----~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~  149 (159)
T COG1580          76 PKDRYVKIAITLEVANKALLE-ELE----EKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVK  149 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHHHH-HHH----HhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeE
Confidence            566778888888886542211 111    123678899999999999999986  499999999999999998755 899


Q ss_pred             EEEEeecCC
Q psy16696        203 RYEIRDIKL  211 (296)
Q Consensus       203 ~v~I~~i~~  211 (296)
                      +|.++++.+
T Consensus       150 dV~fT~fii  158 (159)
T COG1580         150 DVLFTNFII  158 (159)
T ss_pred             EEeeehhhc
Confidence            999988643

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=93.68  E-value=0.26  Score=42.68  Aligned_cols=60  Identities=18%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             cCeEEEEEEEeecCCChHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16696        197 WGITCLRYEIRDIKLPSRVNEAM-------QMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILE  257 (296)
Q Consensus       197 ~Gi~i~~v~I~~i~~p~~~~~ai-------~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~e  257 (296)
                      ..+.|.++.+.+ .+-+.+.+.+       .....++-++++.+..++++++..+..|+++++..++.
T Consensus       141 ~~v~i~~i~~p~-~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~  207 (242)
T cd03405         141 VDVRIKRIDLPE-EVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIR  207 (242)
T ss_pred             EEEEEEeccCCH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777653 2333332222       22234445566667778888888888888888888833

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=92.93  E-value=0.24  Score=43.62  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=11.6

Q ss_pred             HhhHHHHHHHHHhhccchhhh
Q psy16696        273 LESEGIRAADINVAEGKRQAK  293 (296)
Q Consensus       273 ~~Aea~~~~~~~~Aeaea~a~  293 (296)
                      ..|++++++.++.|+|++++.
T Consensus       208 ~~A~~ea~~~~~~A~a~~~~~  228 (266)
T cd03404         208 PKARGEAARIIQEAEAYKEEV  228 (266)
T ss_pred             HHhHhHHHHHHHHHHHHHHhH
Confidence            445555555555555555544

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=92.93  E-value=3  Score=31.35  Aligned_cols=47  Identities=21%  Similarity=0.115  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy16696        216 NEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYL  262 (296)
Q Consensus       216 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~  262 (296)
                      .+.+.....|+...+..+.+|+.++...+..|+.++...+-+++.+.
T Consensus         6 ~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA   52 (108)
T COG2811           6 SEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEA   52 (108)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666788888888888888888888888888877775655554

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.56  E-value=2.1  Score=36.37  Aligned_cols=93  Identities=10%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             eccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhh-ccCe
Q psy16696        121 ITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE-AWGI  199 (296)
Q Consensus       121 ~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~-~~Gi  199 (296)
                      ..-||..|.....+..|-  ....+.+....+..+.+.-++.+..+-++-...+++.+-+.|++.+.+.   -|+ .--+
T Consensus       139 vam~gievkakaritvra--ni~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~gtaf  213 (328)
T COG4864         139 VAMNGIEVKAKARITVRA--NIERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDSGTAF  213 (328)
T ss_pred             eeccceEEEEEEEEEehh--hHHHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCCCcee
Confidence            345666655554444432  2333445455666777777777777777777888999999888877542   232 2357


Q ss_pred             EEEEEEEeecCCChHHHHH
Q psy16696        200 TCLRYEIRDIKLPSRVNEA  218 (296)
Q Consensus       200 ~i~~v~I~~i~~p~~~~~a  218 (296)
                      +|.++.|-|++....+-.-
T Consensus       214 eilsidiadvdigkniga~  232 (328)
T COG4864         214 EILSIDIADVDIGKNIGAK  232 (328)
T ss_pred             EEEEeeeeccccccccccc
Confidence            8999999999887765443

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=91.51  E-value=4.2  Score=29.72  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q psy16696        157 QLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCLRYEIRDI  209 (296)
Q Consensus       157 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i  209 (296)
                      +.+++.+...++.++.+++.+  ++..+.+++++.+++.+.+-  .|.+|.++++
T Consensus        44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f   96 (99)
T PF03748_consen   44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF   96 (99)
T ss_pred             HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence            578888899999999999984  59999999999999998543  4888888775

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>TIGR01933 hflK HflK protein

Probab=90.36  E-value=1.3  Score=38.92  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=41.5

Q ss_pred             hccCeEEEEEEEeecCCChHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696        195 EAWGITCLRYEIRDIKLPSRVNEAMQMQV-------EAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKY  261 (296)
Q Consensus       195 ~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~-------~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~  261 (296)
                      .=..+.|.++.+-+ .+-+.+.+.+..++       .|+.++...+.+|+++++..+.+|++.++..+++|+++
T Consensus       136 ~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~  208 (261)
T TIGR01933       136 TVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGD  208 (261)
T ss_pred             EEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33457888888664 34444554443332       33334455566788888888889998888888554443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>TIGR01932 hflC HflC protein

Probab=89.68  E-value=1.5  Score=39.84  Aligned_cols=79  Identities=10%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHhhc-cCeEEEEEEEeecCCChHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy16696        180 ESLNESIVHAINNASEA-WGITCLRYEIRDIKLPSRVNEAMQM-------QVEAERKKRAAILESEGIRAADINVAEGKR  251 (296)
Q Consensus       180 ~~i~~~v~~~l~~~l~~-~Gi~i~~v~I~~i~~p~~~~~ai~~-------~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a  251 (296)
                      ..+.+.+.+.+...-=. -.+.|.++.+-+ .+-+.+.+.+..       +..++-++.+....++++++..+..|++++
T Consensus       178 ~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~-~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a  256 (317)
T TIGR01932       178 REISQIANSQLKDIGIEVVDVRIKKINYSD-ELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYR  256 (317)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666553222 356777777653 444554433322       222333444555556666666677777777


Q ss_pred             HHHHHHHH
Q psy16696        252 QAKILEAA  259 (296)
Q Consensus       252 ~~~~~ea~  259 (296)
                      ++.+++|+
T Consensus       257 ~a~~~~Ae  264 (317)
T TIGR01932       257 TARIIKGE  264 (317)
T ss_pred             HHHHHHhh
Confidence            66664433

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=89.26  E-value=6  Score=31.40  Aligned_cols=51  Identities=20%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q psy16696        157 QLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCLRYEIRDI  209 (296)
Q Consensus       157 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i  209 (296)
                      +.+++.+-..+++.+.+++.+  +++.+.+++.+.++..+.+ | .|.+|.++++
T Consensus        87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f  139 (142)
T PRK07718         87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF  139 (142)
T ss_pred             hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence            367788888999999999984  5999999999999988876 4 6888888876

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=88.94  E-value=1.8  Score=39.65  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=44.0

Q ss_pred             EEEeecCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16696        204 YEIRDIKLPS-RVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAAD  282 (296)
Q Consensus       204 v~I~~i~~p~-~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~  282 (296)
                      +.|.++.+.+ .+-..+.+.+..       ..+|+.++.+...+|++++++..                 +.++|+++..
T Consensus       203 I~V~~V~i~~i~~P~~v~~ai~~-------~~~Aere~~a~~~~aege~~a~~-----------------~~a~A~~e~~  258 (334)
T PRK11029        203 IEVVDVRIKQINLPTEVSDAIYN-------RMRAEREAVARRHRSQGQEEAEK-----------------LRATADYEVT  258 (334)
T ss_pred             cEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhHHH
Confidence            6666666533 344445433332       23456666667777777777766                 7788888888


Q ss_pred             HHhhccchhhhhh
Q psy16696        283 INVAEGKRQAKIL  295 (296)
Q Consensus       283 ~~~Aeaea~a~~~  295 (296)
                      ++.|+|++++..+
T Consensus       259 ~~~AeA~~~a~i~  271 (334)
T PRK11029        259 RTLAEAERQGRIM  271 (334)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888876544

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=88.17  E-value=7.2  Score=34.79  Aligned_cols=98  Identities=17%  Similarity=0.213  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhhccCeEE--EEEEEeecCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy16696        184 ESIVHAINNASEAWGITC--LRYEIRDIKL-PSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAK  260 (296)
Q Consensus       184 ~~v~~~l~~~l~~~Gi~i--~~v~I~~i~~-p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~  260 (296)
                      +.+...+.+.+... +.-  ..+.|.++.+ ..++-+.+.+.+.-....+.++.-|.......+.+|++++.+.+.+|++
T Consensus       124 d~I~~~I~~~l~e~-l~~y~~GI~I~dV~I~~id~P~~V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~  202 (280)
T cd03406         124 DQIDENLKLALQKD-LTRMAPGLEIQAVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEK  202 (280)
T ss_pred             HHHHHHHHHHHHHH-HhccCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHH
Confidence            35666666666652 121  2788888887 4456666665432111111122224444448999999999999999999


Q ss_pred             HH-HHHHHHHHHHHhhHHHHHHH
Q psy16696        261 YL-CKLLIKRAAILESEGIRAAD  282 (296)
Q Consensus       261 ~~-~~~~~~~~~~~~Aea~~~~~  282 (296)
                      +. .+.++.+..+.+-+.++.-.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~  225 (280)
T cd03406         203 VAQVAKILFGQKVMEKETEKRIS  225 (280)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHH
Confidence            98 77777777766666555443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=86.74  E-value=7.9  Score=32.05  Aligned_cols=88  Identities=11%  Similarity=0.034  Sum_probs=59.2

Q ss_pred             cCCcceeccCCc--EEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHH
Q psy16696        115 VPQQSAITSDNV--TLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINN  192 (296)
Q Consensus       115 ~~~~~~~T~D~~--~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~  192 (296)
                      ++...+.++|..  ..-+..++.|...|+... -.    -..-...++..+..++++.+.+|+. ++..+..++++.+|.
T Consensus        88 l~ef~vNLaD~~~~r~~vki~l~~e~~d~~l~-~E----L~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~  161 (181)
T PRK06654         88 IGEIRGNTADTPPKTFVVKLALGYAENNKNIL-NE----LGRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINS  161 (181)
T ss_pred             cCceEEEcCCCCCceEEEEEEEEEEcCCHHHH-HH----HHhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHH
Confidence            444445566653  334566666665444211 00    0112356788889999999999998 889999999999998


Q ss_pred             HhhccCeEEEEEEEeecC
Q psy16696        193 ASEAWGITCLRYEIRDIK  210 (296)
Q Consensus       193 ~l~~~Gi~i~~v~I~~i~  210 (296)
                      .|.+-  .|.+|.++++.
T Consensus       162 iL~~G--kV~~VYFTeFv  177 (181)
T PRK06654        162 ILRNG--EIKDIAFTQID  177 (181)
T ss_pred             hcCCC--ceEEEEEEEEE
Confidence            88763  47788777654

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=85.08  E-value=12  Score=28.48  Aligned_cols=51  Identities=14%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy16696        218 AMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIK  268 (296)
Q Consensus       218 ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~  268 (296)
                      .|...+.|++++..-+..|+.++...+.+|+.+++..+-+-...++.+.++
T Consensus         7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~   57 (113)
T TIGR01147         7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKE   57 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778899999999999999999999999999988774433333444433

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>KOG2668|consensus

Probab=84.07  E-value=8.7  Score=34.97  Aligned_cols=15  Identities=13%  Similarity=0.430  Sum_probs=8.1

Q ss_pred             cCccEEEeCcceeEE
Q psy16696         89 EPGLNILIPIIDKIK  103 (296)
Q Consensus        89 ~pG~~~~~P~~~~v~  103 (296)
                      ..|+.|..|-+-+|.
T Consensus        55 segvP~~vtgVaqvk   69 (428)
T KOG2668|consen   55 SEGVPFVVTGVAQVK   69 (428)
T ss_pred             ccCCceEeeeeEEEe
Confidence            456666666544443

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=82.65  E-value=6.5  Score=29.34  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16696        218 AMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKIL  256 (296)
Q Consensus       218 ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~  256 (296)
                      .|...+.|+.++..-+.+|+.++...+.+|+.+++..+-
T Consensus         5 ~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~   43 (105)
T PF03179_consen    5 GIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIE   43 (105)
T ss_dssp             -SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667888888888888888888888888888877663

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
4fvf_A	128	Spfh Domain Of Mouse Stomatin (Crystal Form 1) Leng		1e-19
4fvg_A	133	Spfh Domain Of Mouse Stomatin (Crystal Form 3) Leng		1e-19
4fvj_A	133	Spfh Domain Of The Mouse Stomatin (Crystal Form 2)		1e-19
3bk6_A	188	Crystal Structure Of A Core Domain Of Stomatin From		1e-18
2rpb_A	113	The Solution Structure Of Membrane Protein Length =		3e-12

>pdb|4FVF|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 1) Length = 128

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 97  PIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAIT 156
           P  D +  V  ++ I+ D+P Q  +T D+VT+S+DGV+Y ++ +  LA   + + + A  
Sbjct: 1   PCTDSLIKV-DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATR 59
Query: 157 QLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVN 216
            LAQTT+R+ LG  +L ++  +RE +   +   +++A++ WGI   R EI+D+KLP ++ 
Sbjct: 60  LLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQ 119
Query: 217 EAMQMQVEA 225
            AM  + EA
Sbjct: 120 RAMAAEAEA 128

>pdb|4FVG|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 3) Length = 133

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 75/118 (63%)
Query: 108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSEL 167
           ++ I+ D+P Q  +T D+VT+S+DGV+Y ++ +  LA   + + + A   LAQTT+R+ L
Sbjct: 16  MRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNAL 75
Query: 168 GKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEA 225
           G  +L ++  +RE +   +   +++A++ WGI   R EI+D+KLP ++  AM  + EA
Sbjct: 76  GTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133

>pdb|4FVJ|A Chain A, Spfh Domain Of The Mouse Stomatin (Crystal Form 2) Length = 133

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 75/118 (63%)
Query: 108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSEL 167
           ++ I+ D+P Q  +T D+VT+S+DGV+Y ++ +  LA   + + + A   LAQTT+R+ L
Sbjct: 16  MRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNAL 75
Query: 168 GKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEA 225
           G  +L ++  +RE +   +   +++A++ WGI   R EI+D+KLP ++  AM  + EA
Sbjct: 76  GTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133

>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From Pyrococcus Horikoshii Length = 188

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 71/112 (63%)
Query: 108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSEL 167
           L+   +DVP Q  IT DNV + ++ V+Y ++ DP  A   V++   A +Q++QTT+RS +
Sbjct: 11  LRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVI 70
Query: 168 GKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAM 219
           G+  LD++  ER+ LN  +   I+ A++ WGI     EI+D++LP+ + +AM
Sbjct: 71  GQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM 122

>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein Length = 113

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 62/106 (58%)
Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSE 166
            L+E  IDVP Q  I  DNV +++D V+Y ++ DP  A Y V D   AI +LAQT +R+ 
Sbjct: 6   DLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAI 65
Query: 167 LGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLP 212
           +G++ LD+    R+ +N  +   ++  ++ WG+   R EI+ I  P
Sbjct: 66  IGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPP 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	1e-50
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	2e-46
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	1e-45
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	3e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score =  164 bits (417), Expect = 1e-50
 Identities = 60/161 (37%), Positives = 96/161 (59%), Gaps = 5/161 (3%)

Query: 98  IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQ 157
           I +K   V  L+   +DVP Q  IT DNV + ++ V+Y ++ DP  A   V++   A +Q
Sbjct: 2   IFEKAVIV-DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQ 60

Query: 158 LAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNE 217
           ++QTT+RS +G+  LD++  ER+ LN  +   I+ A++ WGI     EI+D++LP+ + +
Sbjct: 61  ISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQK 120

Query: 218 AMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEA 258
           AM  Q EAER++RA I  +E  R A    AE  R+A  + +
Sbjct: 121 AMARQAEAERERRARITLAEAERQA----AEKLREAAEIIS 157

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113

 Score =  151 bits (383), Expect = 2e-46
 Identities = 39/106 (36%), Positives = 62/106 (58%)

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSE 166
            L+E  IDVP Q  I  DNV +++D V+Y ++ DP  A Y V D   AI +LAQT +R+ 
Sbjct: 6   DLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAI 65

Query: 167 LGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLP 212
           +G++ LD+    R+ +N  +   ++  ++ WG+   R EI+ I  P
Sbjct: 66  IGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPP 111

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133

 Score =  149 bits (379), Expect = 1e-45
 Identities = 45/132 (34%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 94  ILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEF 153
           +  P  D    V  ++ I+ D+P Q  +T D+VT+S+DGV+Y ++ +  LA   + + + 
Sbjct: 3   LGSPSTDSAAKV-DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADS 61

Query: 154 AITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPS 213
           A   LAQTT+R+ LG  +L ++  +RE +   +   +++A++ WGI   R EI+D+KLP 
Sbjct: 62  ATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPV 121

Query: 214 RVNEAMQMQVEA 225
           ++  AM  + EA
Sbjct: 122 QLQRAMAAEAEA 133

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score =  102 bits (255), Expect = 3e-27
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPY---------LASYGVEDPEFAITQ 157
           SL+ + +    +   T++ V L++ GV  +KI                  V+D +  + Q
Sbjct: 11  SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQ 70

Query: 158 LAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNE 217
             +  +RS LG +++++++++R+   + +           GI  L + I+D+        
Sbjct: 71  TLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLS 130

Query: 218 AMQMQVEAERK 228
           ++     +   
Sbjct: 131 SLGKTQTSGPS 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 7e-09
 Identities = 46/370 (12%), Positives = 106/370 (28%), Gaps = 125/370 (33%)

Query: 2   CTTPVATALLSVAEA-------------------RAKSLDLVAKALETKDGRSAASLSIA 42
           C   + T    V +                      +   L+ K L+ +       L   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQDLP-- 319

Query: 43  EQYVKAFNELAKTNNTLIVPSDANNIASMV------TQAWVVERMGKYHRILEPGLNILI 96
                       T N   +    + IA  +         W      K   I+E  LN+L 
Sbjct: 320 --------REVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 97  PIIDKIKYVQSLKEIAI---DVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEF 153
           P   +  +      +++          I +    LS+     +  +          D   
Sbjct: 368 PAEYRKMF----DRLSVFPPSAH----IPTI--LLSL-----IWFDVIK------SDVMV 406

Query: 154 AITQLAQTTM---RSELGKISLDKVFRE--RESLNESIVHA-------INNASEAWGITC 201
            + +L + ++   + +   IS+  ++ E   +  NE  +H        I    ++  +  
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 202 LR----------YEIRDIKLPSRVNEA---------MQMQVEAE---------------- 226
                       + +++I+ P R+            ++ ++  +                
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 227 -RKKRAAILESEGIRAADINVAEG--KRQAKILEAAKYLCKLLIKRAAILESEGIRAADI 283
            +  +  I +++      +N       +  + L  +KY    L++ A + E E I     
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEAI----- 579

Query: 284 NVAEGKRQAK 293
              E  +Q +
Sbjct: 580 -FEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 35/275 (12%), Positives = 76/275 (27%), Gaps = 58/275 (21%)

Query: 21  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVER 80
            D      + KD          +   K+     + ++ ++     +    +    W +  
Sbjct: 26  EDAFVDNFDCKD---------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WTLLS 73

Query: 81  MGK--YHRILEPGLNI-------------LIPIIDKIKYVQSLKEIAIDVPQQSAITSDN 125
             +    + +E  L I               P +    Y++    +  D          N
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYN 130

Query: 126 VT-----LSIDGVLY-LKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLD-KVF-- 176
           V+     L +   L  L+     +   GV       T +A     S   +  +D K+F  
Sbjct: 131 VSRLQPYLKLRQALLELR-PAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 177 --RERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAIL 234
             +   S  E+++  +            + +          +         + + R  + 
Sbjct: 188 NLKNCNS-PETVLEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 235 ESEGIRAADI--NVAEGKRQAKILEAAKYLCKLLI 267
                    +  NV    + AK   A    CK+L+
Sbjct: 240 SKPYENCLLVLLNV----QNAKAWNAFNLSCKILL 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.96
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.96
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.89
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.87
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.86
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	92.14

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.96  E-value=9.4e-29  Score=206.61  Aligned_cols=152  Identities=38%  Similarity=0.600  Sum_probs=144.6

Q ss_pred             cceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHH
Q psy16696         98 IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFR  177 (296)
Q Consensus        98 ~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~  177 (296)
                      |++++..+ ++|.+++++++..++|+|+++|+|+++++|||.||..+++.+.|+...+.+++++.+|+++|+++++++++
T Consensus         2 fi~~v~~v-d~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~   80 (188)
T 3bk6_A            2 IFEKAVIV-DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLS   80 (188)
T ss_dssp             CEEECCCC-CSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ceEEEEEE-eeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHh
Confidence            67898888 56999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy16696        178 ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGK  250 (296)
Q Consensus       178 ~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~  250 (296)
                      +|++|+..+.+.+++.+.+|||+|++|.|++|+||+++.++|++++.|++++++.+.+|+|++++.+..+++.
T Consensus        81 ~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~  153 (188)
T 3bk6_A           81 ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAA  153 (188)
T ss_dssp             CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888777663

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.96  E-value=7.3e-29  Score=195.60  Aligned_cols=131  Identities=34%  Similarity=0.636  Sum_probs=107.3

Q ss_pred             EEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHH
Q psy16696         94 ILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLD  173 (296)
Q Consensus        94 ~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~  173 (296)
                      ++.||++++.++ ++|.+++++++++++|+|++.|.|+++++|||.||.+|+|++.|++..+..+++++||+++|+++++
T Consensus         3 l~~P~id~v~~v-d~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ld   81 (133)
T 4fvg_A            3 LGSPSTDSAAKV-DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLS   81 (133)
T ss_dssp             -----------C-CCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             CCCCceeEEEEE-EeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHH
Confidence            778999999999 5799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHH
Q psy16696        174 KVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEA  225 (296)
Q Consensus       174 el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~A  225 (296)
                      +++++|++|...+++.+++.+.+|||+|.+|+|++++||+++.++|+++++|
T Consensus        82 eil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A  133 (133)
T 4fvg_A           82 QILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA  133 (133)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999877765

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.89  E-value=4.3e-24  Score=170.33  Aligned_cols=129  Identities=17%  Similarity=0.269  Sum_probs=114.8

Q ss_pred             cceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEc-CcccccccC--------CCHHHHHHHHHHHHHHHHHc
Q psy16696         98 IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIN-DPYLASYGV--------EDPEFAITQLAQTTMRSELG  168 (296)
Q Consensus        98 ~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~-d~~~~~~~~--------~~~~~~l~~~~~~~lr~vi~  168 (296)
                      |++++.++ ++|.+++++++++++|+|+++|.|+++++|||. ||..+.+..        ......+.+++++.||+++|
T Consensus         3 ~i~~v~~v-dlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG   81 (143)
T 1win_A            3 SGSSGQRI-SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG   81 (143)
T ss_dssp             CCCCCCSC-CCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEE-ECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence            57888888 679999999999999999999999999999998 576554322        12455688899999999999


Q ss_pred             cCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHH
Q psy16696        169 KISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAER  227 (296)
Q Consensus       169 ~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~  227 (296)
                      ++++++++++|+.|...+.+.+++.+.+|||+|.+|.|+||+||+++.++|++++.|+.
T Consensus        82 ~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~  140 (143)
T 1win_A           82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP  140 (143)
T ss_dssp             HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999997776653

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.87  E-value=3.2e-22  Score=153.22  Aligned_cols=108  Identities=36%  Similarity=0.650  Sum_probs=104.8

Q ss_pred             eceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHH
Q psy16696        107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESI  186 (296)
Q Consensus       107 ~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v  186 (296)
                      ++|.+++++++..++|+|+++|.++++++|||.||.++++++.++...+.+.+++++|+++|++++++++++|++|+..+
T Consensus         6 d~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~~i   85 (113)
T 2rpb_A            6 DLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINARL   85 (113)
T ss_dssp             CCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHHHH
T ss_pred             eeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCeEEEEEEEeecCCChH
Q psy16696        187 VHAINNASEAWGITCLRYEIRDIKLPSR  214 (296)
Q Consensus       187 ~~~l~~~l~~~Gi~i~~v~I~~i~~p~~  214 (296)
                      ++.+++.+.+|||+|.+|.|++++||++
T Consensus        86 ~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           86 REELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            9999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.86  E-value=4.4e-07  Score=88.07  Aligned_cols=138  Identities=9%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             cCeeeEEecCccEEEeCcceeEEEE----------eeceeEeeecCCc------ceeccCCcEEEEEEEEEEEEc--Cc-
Q psy16696         81 MGKYHRILEPGLNILIPIIDKIKYV----------QSLKEIAIDVPQQ------SAITSDNVTLSIDGVLYLKIN--DP-  141 (296)
Q Consensus        81 ~G~~~~~~~pG~~~~~P~~~~v~~~----------~~~r~~~~~~~~~------~~~T~D~~~v~v~~~v~yrI~--d~-  141 (296)
                      -|+..-+.+|-+.+.-|- +.+..+          ..++...+.+.+.      .+-|+|...+.+..+++|...  |+ 
T Consensus       475 ~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~L~LsYnW~F~~~d~~  553 (861)
T 2zuo_A          475 AKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRN  553 (861)
T ss_dssp             SCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEEEEEEEEEEECCTTTT
T ss_pred             CCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEEEEEEEEEEEeccCCC
Confidence            345444788988766663 333332          0122222333332      467999999999999999884  44 


Q ss_pred             --c--cccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHH-HHHHHHH---------------HH--HHhhccCe
Q psy16696        142 --Y--LASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESL-NESIVHA---------------IN--NASEAWGI  199 (296)
Q Consensus       142 --~--~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i-~~~v~~~---------------l~--~~l~~~Gi  199 (296)
                        .  ...|.+.|+-...-..+.+.+|..++..++++++.+-..| ...+...               .+  -.+...|+
T Consensus       554 ~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~l  633 (861)
T 2zuo_A          554 DPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGL  633 (861)
T ss_dssp             CHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCE
T ss_pred             ChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCe
Confidence              2  5679999999999999999999999999999999875444 2222111               01  11345699


Q ss_pred             EEEEEEEeecCCChH-HHHHH
Q psy16696        200 TCLRYEIRDIKLPSR-VNEAM  219 (296)
Q Consensus       200 ~i~~v~I~~i~~p~~-~~~ai  219 (296)
                      .|.+|.|+++.|-++ ..+++
T Consensus       634 vitsVDvqsvEpvDqrtrd~L  654 (861)
T 2zuo_A          634 VVSSVDVQSVEPVDQRTRDAL  654 (861)
T ss_dssp             EEEEEEEEEEEESSHHHHHHH
T ss_pred             EEEEEeeeeecccCHHHHHHH
Confidence            999999999998543 44443

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=92.14  E-value=2.3  Score=30.31  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696        230 RAAILESEGIRAADINVAEGKRQAKILEAAKY  261 (296)
Q Consensus       230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~  261 (296)
                      .+++..|+.++...+..|++++.+.+.+|+..
T Consensus        19 ~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~   50 (105)
T 3v6i_B           19 LERLEAAKKEAEERVKRAEAEAKALLEEAEAK   50 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	1e-26

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.8 bits (248), Expect = 1e-26
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP---------YLASYGVEDPEFAITQ 157
           SL+ + +    +   T++ V L++ GV  +KI                  V+D +  + Q
Sbjct: 11  SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQ 70

Query: 158 LAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNE 217
             +  +RS LG +++++++++R+   + +           GI  L + I+D+        
Sbjct: 71  TLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLS 130

Query: 218 AMQMQVEAERK 228
           ++     +   
Sbjct: 131 SLGKTQTSGPS 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.87

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.9e-23  Score=163.71  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=113.6

Q ss_pred             eEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc---------cCCCHHHHHHHHHHHHHHHHHccCC
Q psy16696        101 KIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY---------GVEDPEFAITQLAQTTMRSELGKIS  171 (296)
Q Consensus       101 ~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~---------~~~~~~~~l~~~~~~~lr~vi~~~~  171 (296)
                      ++.++ +++.++++++.++++|+||++|+|+++++|||.||.++++         ...+++..+.+.+++++|+++|+++
T Consensus         6 s~~ri-slr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~   84 (143)
T d1wina_           6 SGQRI-SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT   84 (143)
T ss_dssp             CCCSC-CCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ceeEe-eeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34456 6899999999999999999999999999999998876542         3456888899999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696        172 LDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE  226 (296)
Q Consensus       172 ~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae  226 (296)
                      +++++++|++|.+.+.+.+++.+.+|||+|.+|.|+||++|++|.++|++++.|.
T Consensus        85 l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A~  139 (143)
T d1wina_          85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999877653