Psyllid ID: psy16699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPDL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccEEEccccccccccccEEEcccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccccccEEEEEEEEHcccccEEEEEEEEccccccccccccccEEcccccccccccccccccccEEEEcccccccccccccccEEEEEEEcccccHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccHHHHHHccHHHHHHHHcccc
Coil and Loop (DISEMBL)
madeegtvTLGDVLALQDHLEESAVAVLGaaddknctysqgymkRQALYACLtctpdicdpagfclacnyhcheghNIVELYTkrcdcgnskfgekkcnlepnkdalnvnntynqnfkgkyctcarpypdeenpncdeMIQCALcedwfhsghlgldspipdgedysemscascinmypvlklyphllecpikdkdvssippvteafFWQEGWRSQLCSCEKCLDQQIPDL
Flexible Loop (DISEMBL)
madeegtvTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGekkcnlepnkdalnvnntynqnfKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPDL
Low Complexity Region (SEG)
MADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPDL
Disordered region (IsUnstruct)
*******VTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLD******
Disordered Region (DISOPRED)
*****GT*TLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECP***********VTEAFFWQEGWRSQLCSCEKCLD******
Disordered Region (DISEMBL)
********TLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPDL
Disordered Region (DISPRO)
*******VTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQI***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q8N806	425	Putative E3 ubiquitin-pro	yes	N/A	0.705	0.383	0.547	4e-46
Q8BU04	425	Putative E3 ubiquitin-pro	yes	N/A	0.774	0.421	0.513	5e-45
Q09329	329	Protein mlo2 OS=Schizosac	yes	N/A	0.900	0.632	0.364	2e-28
Q54DV0	465	Putative E3 ubiquitin-pro	yes	N/A	0.480	0.238	0.354	7e-14
Q9SRU2	5098	Auxin transport protein B	no	N/A	0.428	0.019	0.336	0.0002

>sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2

 Score =  184 bits (467), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 24  AVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYT 83
           A AVLG +D + C+YSQG +KRQALYAC TCTP+  +PAG CLAC+Y CH  H + ELYT
Sbjct: 34  ACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYT 93

Query: 84  KR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMI 140
           KR   CDCGNSKF   +C L P+K  +N  N YN NF G YC C RPYPD E+   DEMI
Sbjct: 94  KRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMI 153

Query: 141 QCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYPHLL 188
           QC +CEDWFH  HLG  +  P+  D+ EM C +C+     L  Y   L
Sbjct: 154 QCVVCEDWFHGRHLG--AIPPESGDFQEMVCQACMKRCSFLWAYAAQL 199

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8BU04|UBR7_MOUSE Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1

 Score =  181 bits (458), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 115/185 (62%), Gaps = 6/185 (3%)

Query: 24  AVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYT 83
           A AVLG +D + C+YSQG + RQALYAC TCTP+  +PAG CLAC+Y CH  H + ELYT
Sbjct: 34  ACAVLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYT 93

Query: 84  KR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMI 140
           KR   CDCGNSKF   +C L P+K  +N  N YN NF G YC C RPYPD E+   DEMI
Sbjct: 94  KRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFGLYCVCKRPYPDPEDEVPDEMI 153

Query: 141 QCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLY-PHLLECPIKDKDVSS 199
           QC +CEDWFH  HLG  +  P+  D+ EM C +C+     L  Y   L    I  +D   
Sbjct: 154 QCVVCEDWFHGRHLG--AIPPESGDFQEMVCQACMRRCSFLWAYAAQLAVTRISAEDDGL 211

Query: 200 IPPVT 204
           +P  T
Sbjct: 212 LPNAT 216

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q09329|MLO2_SCHPO Protein mlo2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo2 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 112/233 (48%), Gaps = 25/233 (10%)

Query: 1   MADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICD 60
           M +    +T+   +  Q  LE  A  VL  + D  CTYS GY+K Q LYACLTC      
Sbjct: 1   MEETAHELTVKQYVEQQRELEREAREVLPYSFD-TCTYSMGYLK-QPLYACLTCQKASGS 58

Query: 61  PAGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNF 117
               C +C+  CH  H++V+L+ KR   CDCG ++     CNL  + D     N YN NF
Sbjct: 59  LNAVCYSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118

Query: 118 KGKYCTCARPYPDEENPNCDE--MIQCALCEDWFHSGHLGLDS---PIPDGEDYSEMSCA 172
           +G++C C   Y    NP  +E  M QC LCEDWFH   L   +    IPD E +  + C+
Sbjct: 119 EGRFCICDTVY----NPETEEGTMFQCILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCS 174

Query: 173 SCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEA-FFWQEGWRSQLCSCEKCL 224
            C   Y       HLL     ++   SI     A  F  E +R  LC CE C+
Sbjct: 175 ECSEKY-----RDHLL-----NQKHESIAGTERAPLFLSENFRENLCPCESCI 217

Not known, interfere with mitotic chromosome segregation when overexpressed.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54DV0|UBR7_DICDI Putative E3 ubiquitin-protein ligase ubr7 OS=Dictyostelium discoideum GN=ubr7 PE=3 SV=2

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 33/144 (22%)

Query: 107 LNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDS---PIPDG 163
           LN  N YN NFKGKYC C  PY  +E     +MIQC  CEDWFH   L L+S    IP  
Sbjct: 225 LNERNHYNHNFKGKYCYCDSPYDYKE-----DMIQCIFCEDWFHENCLKLNSNVTDIPSP 279

Query: 164 EDYSEMSCASCINMYPVLKLYPHLLECPIKDKDV------------------------SS 199
            ++S++ CA C++    L LYP +  C I++  +                          
Sbjct: 280 GEFSDLICADCLSKNQFLLLYPQI-RCYIENDHIIIGDNNNNNNNSNNSNSICKVEGGVI 338

Query: 200 IPPVTEAFFWQEGWRSQLCSCEKC 223
            P      F +E W+ +LCSC KC
Sbjct: 339 TPNKKYDLFCKELWKDELCSCLKC 362

Putative E3 ubiquitin-protein ligase.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 3    DEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTY--SQGYMKRQALYACLTCTPDICD 60
            DE+   + G+V +L    EE A +    A  K CT+  S      Q  Y C TC  D+  
Sbjct: 1543 DEDDGTSDGEVASLDKEDEEDANSERYLAS-KVCTFTSSGSNFMEQHWYFCYTC--DLTV 1599

Query: 61   PAGFCLACNYHCHEGHNIVELYTKR--CDCGNSKFGEKKCN-LEPNK 104
              G C  C   CH GH +V   + R  CDCG        C  L+P K
Sbjct: 1600 SKGCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRK 1646

Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
321456371	365	hypothetical protein DAPPUDRAFT_302014 [	0.952	0.602	0.510	3e-59
345483506	364	PREDICTED: putative E3 ubiquitin-protein	0.943	0.598	0.492	4e-59
443700573	388	hypothetical protein CAPTEDRAFT_222324 [	0.935	0.556	0.445	1e-57
307210930	354	Putative E3 ubiquitin-protein ligase UBR	0.939	0.612	0.495	5e-57
322802811	380	hypothetical protein SINV_15108 [Solenop	0.948	0.576	0.491	3e-56
340715539	361	PREDICTED: putative E3 ubiquitin-protein	0.930	0.595	0.497	4e-56
350396739	361	PREDICTED: putative E3 ubiquitin-protein	0.930	0.595	0.493	5e-56
383855164	359	PREDICTED: putative E3 ubiquitin-protein	0.930	0.598	0.506	5e-56
91081785	351	PREDICTED: similar to mlo2 [Tribolium ca	0.930	0.612	0.519	9e-56
328789250	359	PREDICTED: putative E3 ubiquitin-protein	0.922	0.593	0.485	1e-55

>gi|321456371|gb|EFX67481.1| hypothetical protein DAPPUDRAFT_302014 [Daphnia pulex]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 153/235 (65%), Gaps = 15/235 (6%)

Query: 3   DEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP- 61
           +E+  VTL ++L  +  LEE A AVLG +DD NCTY  GY+ RQALYAC+TC     +  
Sbjct: 22  EEDNGVTLVEILEEEAQLEEDANAVLGGSDDANCTYRLGYVNRQALYACVTCRQQSGNTQ 81

Query: 62  -AGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNF 117
            AG CLAC+YHCH+GH ++ELYTKR   CDCGNSKF   KC L   K  +N NN YN NF
Sbjct: 82  LAGICLACSYHCHDGHELIELYTKRNFCCDCGNSKFPSNKCTLATEKSGVNENNVYNHNF 141

Query: 118 KGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177
            GKYCTC +PYPD E+ N DEM+QC +CEDW H+ HL   +P PD  DYSEM C +C+  
Sbjct: 142 MGKYCTCEKPYPDPEDTNPDEMVQCVMCEDWHHNKHLS-KTPPPDS-DYSEMICDACMEK 199

Query: 178 YPVLKLYPHLLE-------CPIKDKDV-SSIPPVTEAFFWQEGWRSQLCSCEKCL 224
           +P L  Y  L++       C ++ + +  +     +A FW EGWR++LC CEKCL
Sbjct: 200 HPFLNAYSSLVDSAQTASSCKLESETIDKNQLNSNKAIFWPEGWRNRLCRCEKCL 254

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483506|ref|XP_001599542.2| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Nasonia vitripennis]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/252 (49%), Positives = 153/252 (60%), Gaps = 34/252 (13%)

Query: 1   MADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICD 60
           + DEE +VT+ DVL  ++ LEE A+AVLGA+DD+NCTYS+GY+ RQALYAC TC      
Sbjct: 13  LEDEENSVTMLDVLQEENALEEDAIAVLGASDDQNCTYSKGYI-RQALYACKTCCSS-GT 70

Query: 61  PAGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNF 117
            A  C AC+ HCHEGH +VELYTKR   CDCGNSKFG+K C+L+ +K + N  N YNQN+
Sbjct: 71  RAAICFACSLHCHEGHELVELYTKRHVRCDCGNSKFGDKACSLDTSKTSENSENKYNQNY 130

Query: 118 KGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177
            G YCTCARPYPD +    DEMIQC +CEDW+HS HLG    +P   DYSEM CA C+  
Sbjct: 131 DGVYCTCARPYPDPDETESDEMIQCVVCEDWYHSKHLGNSDNLPGDNDYSEMICAGCMKA 190

Query: 178 YPVLKLYP--------------------------HLLECPIKDKDVSSIPPVTEAFFWQE 211
           +  L  Y                              EC + + D    P    + FW E
Sbjct: 191 HEFLWRYATKYSVSKVKKPPTNTEEKVEVEESKEQKKECTLPEAD---FPKKEGSCFWIE 247

Query: 212 GWRSQLCSCEKC 223
           GWRS LC+C+KC
Sbjct: 248 GWRSSLCTCDKC 259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443700573|gb|ELT99453.1| hypothetical protein CAPTEDRAFT_222324 [Capitella teleta]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 122/274 (44%), Positives = 151/274 (55%), Gaps = 58/274 (21%)

Query: 2   ADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP 61
           +DEE  V++ D+L  + +LEE+A AVLG +DDKNCTY QGY+ RQALYAC TC P   + 
Sbjct: 18  SDEENVVSMVDILEEEKYLEENANAVLGGSDDKNCTYLQGYLPRQALYACATCVPSGEEQ 77

Query: 62  AGFCLACNYHCHEGHNIVELYTK---RCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFK 118
           AG CLAC+  CH+GHN+ ELYTK   RCDCGNSKF + +C L   K   N +N YNQNF 
Sbjct: 78  AGVCLACSLECHDGHNLYELYTKRNFRCDCGNSKFKDFRCKLSSEKKPFNEDNGYNQNFS 137

Query: 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178
           G YC C+RPYPD E+   DEMIQC +CEDWFH  HLG + P+    DY E++C SC+N  
Sbjct: 138 GVYCVCSRPYPDPEDEVEDEMIQCVMCEDWFHGRHLGREVPV----DYEELTCVSCVNKC 193

Query: 179 PVLKLYP-------------------------------------------------HLLE 189
             L  Y                                                   L E
Sbjct: 194 QFLMQYSSFHCVGEADTKVDVEKTDEEKNEGNEENSNKRKIENEDGTPAKKLKSDKSLTE 253

Query: 190 CPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKC 223
           C   D   +++ P T   FW+ GWRS LC+CEKC
Sbjct: 254 CKRNDFPAATVEPHT--LFWKSGWRSALCTCEKC 285

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307210930|gb|EFN87245.1| Putative E3 ubiquitin-protein ligase UBR7 [Harpegnathos saltator]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/246 (49%), Positives = 161/246 (65%), Gaps = 29/246 (11%)

Query: 2   ADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP 61
            +++ +VT+ DVL +++ LEE A AVLGA+DD+NCTY++GYM RQALYAC TC+      
Sbjct: 9   TEDDNSVTMLDVLQVENQLEEDAYAVLGASDDQNCTYNKGYM-RQALYACKTCSNKT--R 65

Query: 62  AGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFK 118
           A  CLAC++HCHEGH +VELYTKR   CDCG+SKF  K+CNLE  K A N  N YNQNF 
Sbjct: 66  AAVCLACSFHCHEGHELVELYTKRHFRCDCGSSKFEGKQCNLEKQKSATNGENKYNQNFD 125

Query: 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN-- 176
           G YCTCARPYPD E  + DEM+QC +CEDW+HS HL +DS +P  + Y E+ CA C+   
Sbjct: 126 GVYCTCARPYPDPEGDD-DEMLQCIICEDWYHSKHLEVDS-VPAEDTYDEVICARCMREH 183

Query: 177 --------MYPVLKLYPHLLECPIKDKDVSSIP---------PVTE--AFFWQEGWRSQL 217
                    Y VL     + +  I++ DV  +P         PV    + FW++GWR+ L
Sbjct: 184 NFLWRYAAKYAVLGKSDAIADNKIEEVDVCELPKGCQMPKVGPVNTKGSCFWKQGWRTSL 243

Query: 218 CSCEKC 223
           C+C++C
Sbjct: 244 CTCDEC 249

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802811|gb|EFZ23012.1| hypothetical protein SINV_15108 [Solenopsis invicta]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/248 (49%), Positives = 151/248 (60%), Gaps = 29/248 (11%)

Query: 2   ADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP 61
            +++ +VT+ DVL ++  LEE A AVLGA+DD+NCTY++GYM RQALYAC TC  D    
Sbjct: 31  VEDDSSVTMLDVLQVESQLEEDAYAVLGASDDQNCTYNKGYM-RQALYACKTCCSDKI-R 88

Query: 62  AGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFK 118
           A  CLAC++HCHEGH +VELYTKR   CDCGN+KF  K+CNLE  K A N  N YNQNF 
Sbjct: 89  AAVCLACSFHCHEGHELVELYTKRHFRCDCGNTKFNGKQCNLEKMKSATNTENKYNQNFD 148

Query: 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178
           G YCTCARPYPD E    D+M+QC +CEDW+H  HL  D+  P    Y EM CA C+  Y
Sbjct: 149 GVYCTCARPYPDPEGDE-DDMLQCIICEDWYHLKHLECDNSAPVDNSYDEMICAGCMRKY 207

Query: 179 PVLKLYPHLLECPIK------------DKDVSSIPPVTE-----------AFFWQEGWRS 215
             L  Y        K            + DVS +P   +           + FW EGWR+
Sbjct: 208 NFLWKYATKYAVLKKADAKSDVSEKNEEIDVSELPKGCQMPKLGCVDPKGSCFWIEGWRT 267

Query: 216 QLCSCEKC 223
            LC+CE+C
Sbjct: 268 ALCTCEEC 275

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715539|ref|XP_003396269.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Bombus terrestris]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/245 (49%), Positives = 148/245 (60%), Gaps = 30/245 (12%)

Query: 7   TVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCL 66
           +VT+ DVL  ++ LEE A AVLGA+DDKNCTYS+GY  RQALYAC TC       A  CL
Sbjct: 14  SVTMLDVLREENQLEEDAYAVLGASDDKNCTYSKGYT-RQALYACKTCCQKSV-RAAVCL 71

Query: 67  ACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCT 123
           AC++HCHEGH +VELYTKR   CDCGNSKFG KKCNL+P+KD LN  N YN NF G YC 
Sbjct: 72  ACSFHCHEGHELVELYTKRHFRCDCGNSKFGGKKCNLDPSKDLLNSENQYNHNFDGLYCI 131

Query: 124 CARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKL 183
           C RPYPD ++   DEM+QC +CEDW+HS HL  +  +P  + Y EM CA C+     L  
Sbjct: 132 CQRPYPDPDDTVNDEMLQCIICEDWYHSKHLECEKEMPADDAYDEMICAGCMKKNDFLWN 191

Query: 184 YPH------LLECPIKDKDVSSIPPVTEAF-------------------FWQEGWRSQLC 218
           Y +        E    DK+   I   +E+                    FW EGWR+ LC
Sbjct: 192 YANKHTALTTTEVSFVDKEEELIDVESESKSCRMPRNNSAKRIVSRGSCFWIEGWRAALC 251

Query: 219 SCEKC 223
           +CE C
Sbjct: 252 TCETC 256

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396739|ref|XP_003484647.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Bombus impatiens]

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 148/245 (60%), Gaps = 30/245 (12%)

Query: 7   TVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCL 66
           +VT+ DVL  ++ LEE A AVLGA+DDKNCTYS+GY  RQALYAC TC       A  CL
Sbjct: 14  SVTMLDVLREENQLEEDAYAVLGASDDKNCTYSKGYT-RQALYACKTCCQKSV-RAAVCL 71

Query: 67  ACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCT 123
           AC++HCHEGH ++ELYTKR   CDCGNSKFG KKCNL+P+KD+LN  N YN NF G YC 
Sbjct: 72  ACSFHCHEGHELIELYTKRHFRCDCGNSKFGGKKCNLDPSKDSLNSENQYNHNFDGLYCI 131

Query: 124 CARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKL 183
           C RPYPD ++   DEM+QC +CEDW+HS HL  +  +P    Y EM CA C+     L  
Sbjct: 132 CQRPYPDPDDTVNDEMLQCIICEDWYHSKHLECEKEMPADGAYDEMICAGCMKKNDFLWN 191

Query: 184 YPH------LLECPIKDKDVSSIPPVTEAF-------------------FWQEGWRSQLC 218
           Y +        E    DK+   I   +E+                    FW EGWR+ LC
Sbjct: 192 YANKYTALTTTEVSFGDKEEELINVESESKICRMPRNNSAKRIVLRGSCFWTEGWRAALC 251

Query: 219 SCEKC 223
           +CE C
Sbjct: 252 TCETC 256

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855164|ref|XP_003703087.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Megachile rotundata]

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 149/245 (60%), Gaps = 30/245 (12%)

Query: 6   GTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFC 65
            +VT+ DVL  ++ LEE A AVLGA+DDKNCTYS+GY  RQALYAC TC P      G C
Sbjct: 13  SSVTMLDVLREENQLEEDACAVLGASDDKNCTYSKGY-SRQALYACKTCCPK--SGGGIC 69

Query: 66  LACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYC 122
           LAC++HCHEGH +VELYTKR   CDCGNSKF  KKCNL+P+KD +N  N YN NF G YC
Sbjct: 70  LACSFHCHEGHELVELYTKRHFRCDCGNSKFAGKKCNLDPSKDPINPENKYNHNFDGLYC 129

Query: 123 TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLK 182
            C RPYPD ++   DEM+QC +CEDW+HS HL  +  IP  + Y EM CA C+     L 
Sbjct: 130 ICERPYPDPDDTLNDEMLQCIVCEDWYHSKHLECEKGIPADDAYDEMICAGCMRQNDFLW 189

Query: 183 LYPH---LLECP--IKDK-----DVSSIP--------------PVTEAFFWQEGWRSQLC 218
            Y +   + E P    DK     D+  +P                  + FW EGWRS LC
Sbjct: 190 CYANKYAVFETPEASSDKKEESVDIEKLPEGCTMPRNNSPNRTATKGSCFWTEGWRSALC 249

Query: 219 SCEKC 223
            CE C
Sbjct: 250 VCETC 254

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081785|ref|XP_973657.1| PREDICTED: similar to mlo2 [Tribolium castaneum] gi|270005043|gb|EFA01491.1| hypothetical protein TcasGA2_TC007045 [Tribolium castaneum]

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 153/231 (66%), Gaps = 16/231 (6%)

Query: 7   TVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDIC-DP---A 62
           T+TL DVL L+D L + A AVLGA++DK C+Y+ GY+KRQALY+CLTC P+   DP   A
Sbjct: 22  TLTLNDVLELEDELIQDAAAVLGASNDKTCSYNDGYLKRQALYSCLTCIPEARNDPEKGA 81

Query: 63  GFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKG 119
           G CLAC+YHCH+GH +VELYTKR   CDCGN KF   KCNL   K+  N  N YNQNF G
Sbjct: 82  GICLACSYHCHDGHELVELYTKRNFRCDCGNKKFNGAKCNLCSEKEDYNELNKYNQNFGG 141

Query: 120 KYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYP 179
            YC C RPYPD E+P  DEMIQC +CEDW+HS HLG++  IP G  ++EM C SC+  + 
Sbjct: 142 IYCICHRPYPDSEDPLPDEMIQCIICEDWYHSRHLGVE--IPSGP-FAEMICGSCVGKHE 198

Query: 180 VLKLYPHLLECPIKDKDVSSIPPVTE----AFFWQE-GWRSQLCSCEKCLD 225
            L L+   +E  + ++     P        A FW +  WR+ LC+C+ CL+
Sbjct: 199 FL-LHYDTVEVTVSEEKQCKKPETKSENVGAKFWPDISWRNDLCTCDDCLE 248

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789250|ref|XP_394203.3| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like isoform 1 [Apis mellifera] gi|380019178|ref|XP_003693491.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Apis florea]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 145/241 (60%), Gaps = 28/241 (11%)

Query: 9   TLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLAC 68
           T+ DVL  ++ LEE A AVLGA+DDKNCTYS+GY  RQALYAC TC       A  CLAC
Sbjct: 16  TMLDVLREENQLEEDAYAVLGASDDKNCTYSKGYT-RQALYACKTCCQKSM-RAAICLAC 73

Query: 69  NYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCA 125
           ++HCHEGH ++ELYTKR   CDCGNSKFGEKKCNL+ +KD++N  N YN NF G YC C 
Sbjct: 74  SFHCHEGHELIELYTKRHFRCDCGNSKFGEKKCNLDASKDSINSENQYNHNFDGLYCICE 133

Query: 126 RPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYP 185
           RPYPD ++   DEM+QC +CEDW+HS HL  +  +P    Y EM CA C+     L  Y 
Sbjct: 134 RPYPDPDDTVNDEMLQCIICEDWYHSKHLECEKEMPADAAYDEMICAGCMRQNDFLWNYA 193

Query: 186 -----------------------HLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEK 222
                                   L EC +   + +   P   + FW EGWR+ LC+C+ 
Sbjct: 194 KKYTVTDGSNGDKEDDESINVENQLKECTMPRNNSAKRIPSQGSCFWIEGWRAALCTCKT 253

Query: 223 C 223
           C
Sbjct: 254 C 254

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
ZFIN|ZDB-GENE-030131-1535	410	ubr7 "ubiquitin protein ligase	0.774	0.436	0.554	1.8e-60
RGD|1359144	425	Ubr7 "ubiquitin protein ligase	0.783	0.425	0.548	4.2e-57
UNIPROTKB|F1SD54	425	UBR7 "Uncharacterized protein"	0.770	0.418	0.546	6.9e-57
UNIPROTKB|F1PKX8	425	UBR7 "Uncharacterized protein"	0.770	0.418	0.540	6.9e-57
UNIPROTKB|Q8N806	425	UBR7 "Putative E3 ubiquitin-pr	0.770	0.418	0.546	8.8e-57
MGI|MGI:1913872	425	Ubr7 "ubiquitin protein ligase	0.870	0.472	0.507	1.1e-56
UNIPROTKB|A3KMX6	425	UBR7 "Uncharacterized protein"	0.770	0.418	0.546	1.8e-56
TAIR|locus:2138151	452	AT4G23860 [Arabidopsis thalian	0.796	0.407	0.495	6.9e-53
UNIPROTKB|F1NJU8	362	UBR7 "Uncharacterized protein"	0.649	0.414	0.561	7.7e-52
FB|FBgn0032635	404	CG15141 [Drosophila melanogast	0.969	0.554	0.435	1.4e-46

ZFIN|ZDB-GENE-030131-1535 ubr7 "ubiquitin protein ligase E3 component n-recognin 7" [Danio rerio (taxid:7955)]

 Score = 561 (202.5 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 102/184 (55%), Positives = 126/184 (68%)

Query:     4 EEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAG 63
             EE TV+L DVL   + LE  A AVLG +D + C+Y +GY++RQALYAC TCTP   +PAG
Sbjct:     7 EEATVSLVDVLEEDEELENEASAVLGGSDSEKCSYPEGYVRRQALYACNTCTPKGGEPAG 66

Query:    64 FCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGK 120
              CLAC+Y CHEGH++ ELYTKR   CDCGN KFG+ +C L  +K+ +N  N Y+ NF G 
Sbjct:    67 ICLACSYKCHEGHDLFELYTKRNFRCDCGNDKFGDMECKLFADKEKVNSGNKYSHNFFGL 126

Query:   121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPV 180
             YCTC RPYPD E+   DEMIQC +CEDW H  HLG    +PD  +  EM C SC+N  P+
Sbjct:   127 YCTCDRPYPDPEDEVSDEMIQCIVCEDWLHGRHLGC--AVPDCVELQEMICESCMNKTPL 184

Query:   181 LKLY 184
             L  Y
Sbjct:   185 LWNY 188

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

RGD|1359144 Ubr7 "ubiquitin protein ligase E3 component n-recognin 7 (putative)" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 102/186 (54%), Positives = 121/186 (65%)

Query:     2 ADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP 61
             A+ E  V+L DVL   + LE  A AVLG +D + C+YSQG +KRQALYAC TCTP+  +P
Sbjct:    12 AELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEP 71

Query:    62 AGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFK 118
             AG CLAC+Y CH  H + ELYTKR   CDCGNSKF   +C L P+K  +N  N YN NF 
Sbjct:    72 AGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFF 131

Query:   119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178
             G YC C RPYPD E+   DEMIQC +CEDWFH  HLG   P P+  D+ EM C SC+   
Sbjct:   132 GLYCICKRPYPDPEDEVPDEMIQCVVCEDWFHGRHLGA-IP-PESGDFQEMVCQSCMRRC 189

Query:   179 PVLKLY 184
               L  Y
Sbjct:   190 SFLWAY 195

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SD54 UBR7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 535 (193.4 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 100/183 (54%), Positives = 121/183 (66%)

Query:     5 EGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGF 64
             E  V+L DVL   + LE  A AVLG +D + C+YSQG +KRQALYAC TCTP+  +PAG 
Sbjct:    15 EPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGI 74

Query:    65 CLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKY 121
             CLAC+Y CH  H + ELYTKR   CDCGNSKF   +C L P+K  +N +N YN NF G Y
Sbjct:    75 CLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKINSSNKYNDNFFGLY 134

Query:   122 CTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVL 181
             C C RPYPD E+   DEMIQC +CEDWFH  HLG  +P P+  D+ EM C +C+     L
Sbjct:   135 CICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGA-AP-PESGDFQEMVCQACMKRCSFL 192

Query:   182 KLY 184
               Y
Sbjct:   193 WAY 195

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1PKX8 UBR7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 531 (192.0 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 99/183 (54%), Positives = 120/183 (65%)

Query:     5 EGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGF 64
             E  V+L DVL   + LE  A AVLG +D + C+YSQG +KRQALYAC TCTP+  +PAG 
Sbjct:    15 EPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGI 74

Query:    65 CLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKY 121
             CLAC+Y CH  H + ELYTKR   CDCGNSKF   +C L P+K  +N  N YN NF G Y
Sbjct:    75 CLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKINSGNKYNDNFFGLY 134

Query:   122 CTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVL 181
             C C RPYPD ++   DEMIQC +CEDWFH  HLG  +P P+  D+ EM C +C+     L
Sbjct:   135 CICKRPYPDPDDEIPDEMIQCVVCEDWFHGRHLGA-TP-PESGDFQEMVCQACMKRCSFL 192

Query:   182 KLY 184
               Y
Sbjct:   193 WAY 195

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q8N806 UBR7 "Putative E3 ubiquitin-protein ligase UBR7" [Homo sapiens (taxid:9606)]

 Score = 530 (191.6 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 100/183 (54%), Positives = 119/183 (65%)

Query:     5 EGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGF 64
             E  V+L DVL   + LE  A AVLG +D + C+YSQG +KRQALYAC TCTP+  +PAG 
Sbjct:    15 EPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGI 74

Query:    65 CLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKY 121
             CLAC+Y CH  H + ELYTKR   CDCGNSKF   +C L P+K  +N  N YN NF G Y
Sbjct:    75 CLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLY 134

Query:   122 CTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVL 181
             C C RPYPD E+   DEMIQC +CEDWFH  HLG   P P+  D+ EM C +C+     L
Sbjct:   135 CICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGA-IP-PESGDFQEMVCQACMKRCSFL 192

Query:   182 KLY 184
               Y
Sbjct:   193 WAY 195

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913872 Ubr7 "ubiquitin protein ligase E3 component n-recognin 7 (putative)" [Mus musculus (taxid:10090)]

 Score = 530 (191.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 105/207 (50%), Positives = 127/207 (61%)

Query:     2 ADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP 61
             A+ E  V+L DVL   + LE  A AVLG +D + C+YSQG + RQALYAC TCTP+  +P
Sbjct:    12 AELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEP 71

Query:    62 AGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFK 118
             AG CLAC+Y CH  H + ELYTKR   CDCGNSKF   +C L P+K  +N  N YN NF 
Sbjct:    72 AGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFF 131

Query:   119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178
             G YC C RPYPD E+   DEMIQC +CEDWFH  HLG   P P+  D+ EM C +C+   
Sbjct:   132 GLYCVCKRPYPDPEDEVPDEMIQCVVCEDWFHGRHLGA-IP-PESGDFQEMVCQACMRRC 189

Query:   179 PVLKLYP-HLLECPIKDKDVSSIPPVT 204
               L  Y   L    I  +D   +P  T
Sbjct:   190 SFLWAYAAQLAVTRISAEDDGLLPNAT 216

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A3KMX6 UBR7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 530 (191.6 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
 Identities = 100/183 (54%), Positives = 119/183 (65%)

Query:     5 EGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGF 64
             E  V+L DVL   + LE  A AVLG +D + C+YSQG +KRQALYAC TCTP+  +PAG 
Sbjct:    15 EPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGI 74

Query:    65 CLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKY 121
             CLAC+Y CH  H + ELYTKR   CDCGNSKF   +C L P+K  +N  N YN NF G Y
Sbjct:    75 CLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKINSGNKYNDNFFGLY 134

Query:   122 CTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVL 181
             C C RPYPD E+   DEMIQC +CEDWFH  HLG   P P+  D+ EM C +C+     L
Sbjct:   135 CICKRPYPDPEDEIPDEMIQCIVCEDWFHGRHLGA-IP-PESGDFQEMVCQACMKRCSFL 192

Query:   182 KLY 184
               Y
Sbjct:   193 WAY 195

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

TAIR|locus:2138151 AT4G23860 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 99/200 (49%), Positives = 121/200 (60%)

Query:     3 DE-EGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDP 61
             DE EGT+T+ + +   D  E +A  VLG  +   CT+ +GYMKRQA+++C+TCTP+    
Sbjct:     8 DEAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITCTPE--GN 65

Query:    62 AGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFK 118
             AG C AC   CH+GH ++EL+TKR   CDCGNSKFG   C L P+KD  N  N+YN NFK
Sbjct:    66 AGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSYNHNFK 125

Query:   119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLD------SPIPDGED----YSE 168
             G YCTC RPYPD       EMIQC LCEDWFH  HLGL       S IP  E+    Y +
Sbjct:   126 GLYCTCDRPYPDPNVEEQVEMIQCCLCEDWFHEEHLGLTPSDSVGSQIPRDEESEPIYED 185

Query:   169 MSCASCINMYPVLKLYPHLL 188
               C +C      L LYP  L
Sbjct:   186 FICQNCSPACSFLTLYPENL 205

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

UNIPROTKB|F1NJU8 UBR7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 468 (169.8 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 87/155 (56%), Positives = 99/155 (63%)

Query:    40 QGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEK 96
             QG +KRQALYAC TCTP   +PAG CLAC+Y CH  H ++ELYTKR   CDCGNSKF   
Sbjct:     1 QGAVKRQALYACSTCTPPGAEPAGICLACSYECHGSHRLLELYTKRNFRCDCGNSKFKNL 60

Query:    97 KCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGL 156
             +C L P K  +N  N YN NF G YCTC RPYPD E+   DEMIQC +CEDWFH  HLG 
Sbjct:    61 QCKLLPEKGKVNSGNKYNDNFYGLYCTCKRPYPDPEDEIPDEMIQCIVCEDWFHGRHLGA 120

Query:   157 DSPIPDGEDYSEMSCASCINMYPVLKLYPHLLECP 191
               P PD  D+ EM C +C+N    L  Y      P
Sbjct:   121 -VP-PDSGDFHEMVCQACMNHCQFLWAYASQFAVP 153

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0032635 CG15141 [Drosophila melanogaster (taxid:7227)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 104/239 (43%), Positives = 138/239 (57%)

Query:     4 EEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTP----DIC 59
             E+ T+T+ DVL  +  LE+   AVLGA+D+K+CTY++G + RQALY+CLTC P    D+ 
Sbjct:    20 EQSTITMLDVLEQEKELEDEYAAVLGASDEKSCTYAKGPIGRQALYSCLTCCPEAREDLD 79

Query:    60 DPAGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFGEKKCNLEPNKDAL---NVNNTY 113
               AG CLAC+Y CHE H +VELYTKR   CDC   + G  KC+L P  + +   NV N Y
Sbjct:    80 KAAGVCLACSYRCHEHHELVELYTKRNFRCDCPTQRLG--KCSLNPQVEGVQPRNVGNLY 137

Query:   114 NQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDY-SEMSCA 172
             NQNF+G YC C RPYPD +    + M+QCA+CEDWFH  H+          D  SEM C 
Sbjct:   138 NQNFQGLYCKCKRPYPDPDRTVEEVMLQCAICEDWFHLPHMKAPGASDKWLDVCSEMICD 197

Query:   173 SCINMYPVLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLD-QQIPD 230
              C++  P LK Y  L   P+ +      P   ++    E  RS +C   K  + +  PD
Sbjct:   198 GCMDAKPFLKDYTGLALQPVLEDAKEDKPEADDSQLKNELDRS-ICDIMKVPEGESQPD 255

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09329	MLO2_SCHPO	No assigned EC number	0.3648	0.9004	0.6322	yes	N/A
Q8N806	UBR7_HUMAN	6, ., 3, ., 2, ., -	0.5476	0.7056	0.3835	yes	N/A
Q8BU04	UBR7_MOUSE	6, ., 3, ., 2, ., -	0.5135	0.7748	0.4211	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	231
pfam02207	71	pfam02207, zf-UBR, Putative zinc finger in N-recog	4e-10
smart00396	71	smart00396, ZnF_UBR1, Putative zinc finger in N-re	5e-04

>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box)

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 34  KNCTYSQGYMKRQALYACLTCTPDICDPAGFCLAC-NYHCHEGHNIVELYTKR---CDCG 89
             C Y       Q +Y CLTC+ D       C  C +  CH+GH++VEL++KR   CDCG
Sbjct: 1   SVCGYVFK--SGQPVYRCLTCSLD--PTCVICYECFSISCHKGHDVVELFSKRGGCCDCG 56

Query: 90  NSKFGEKK--CNLEP 102
           + +  +K+  C L  
Sbjct: 57  DPEAWKKEGFCKLHK 71

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71

>gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 34  KNCTYSQGYMKRQALYACLTCTPDICDPAGFCLAC-NYHCHEGHNIVELYTKR----CDC 88
             C Y     +    Y C TC  D       C  C    CH+GH  V L T R    CDC
Sbjct: 1   DVCGYKFTGGEVI--YRCKTCGLDPT--CVLCSDCFRPSCHKGH-DVSLKTSRGSGICDC 55

Query: 89  GNS--KFGEKKCNLE 101
           G+      + KC   
Sbjct: 56  GDKEAWNEDLKCKAH 70

Domain is involved in recognition of N-end rule substrates in yeast Ubr1p. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
KOG2752|consensus	345		100.0
PF02207	71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	99.12
smart00396	71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	98.9
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.64
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.51
KOG1777|consensus	625		98.51
KOG2752|consensus	345		98.5
KOG1973|consensus	274		98.36
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	97.92
KOG1632|consensus	345		97.56
KOG4323|consensus	464		97.49
KOG0943|consensus	3015		96.27
KOG1776|consensus	1110		95.33
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	85.49
KOG1844|consensus	508		84.83
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	83.2
KOG0825|consensus	1134		82.04
KOG1632|consensus	345		81.19

>KOG2752|consensus

Probab=100.00  E-value=7.6e-61  Score=434.49  Aligned_cols=225  Identities=46%  Similarity=0.908  Sum_probs=185.4

Q ss_pred             CCccCcccHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCcccccceeecccCCCCCCCCceeeccccchhcCCcccccc
Q psy16699          2 ADEEGTVTLGDVLALQDHLEESAVAVLGAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVEL   81 (231)
Q Consensus         2 ~~~~~~vt~~d~l~~q~~le~eA~~~l~~~d~~~CTy~~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel   81 (231)
                      +|...+||+.+|++++++||++|++|||++++++|||++||++||++|+|+||.|.+ ..+|||++|++.||+||+||||
T Consensus         9 ee~~~tiT~~e~vE~~~~lE~~a~~vL~~~~~~~CTy~~Gy~~rQ~l~sClTC~P~~-~~agvC~~C~~~CH~~H~lveL   87 (345)
T KOG2752|consen    9 EEIAPTITLGEYVEQIDELEDEADVVLGTQNPDVCTYAKGYKKRQALFSCLTCTPAP-EMAGVCYACSLSCHDGHELVEL   87 (345)
T ss_pred             hhccccccHHHHHHhHHHHHHHHHhhcCCCCCcccccccCcccccceeEeecccCCh-hhceeEEEeeeeecCCceeeec
Confidence            344558999999999999999999999999999999999999999999999999864 4899999999999999999999


Q ss_pred             cccc---cCCCCCCCCccceeecCCCCcCCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccc-cCCCCCC
Q psy16699         82 YTKR---CDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFH-SGHLGLD  157 (231)
Q Consensus        82 ~~kR---CDCG~~~~~~~~C~L~~~k~~~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH-~~Clg~~  157 (231)
                      ||||   |||||++|+..+|+|.+.|+..|+.|.|||||+|+||+|.+|||||.+++++.|+||.+|||||| ..|+...
T Consensus        88 ~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~  167 (345)
T KOG2752|consen   88 YTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK  167 (345)
T ss_pred             cccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence            9999   99999999999999999999999999999999999999999999999888999999999999999 8887542


Q ss_pred             ---CCCC-----CCC---------cccccccccccccCcccccccccccCCCc---cCCCCC-CCCCCcceeecchhhhc
Q psy16699        158 ---SPIP-----DGE---------DYSEMSCASCINMYPVLKLYPHLLECPIK---DKDVSS-IPPVTEAFFWQEGWRSQ  216 (231)
Q Consensus       158 ---~~~~-----~~~---------~~~~fiC~~C~~k~~~L~~y~~~~~~~~~---~~~~~~-~~~~~~~~f~~~~wr~~  216 (231)
                         ...|     +++         ....-.|..+.++.++.......-.....   ..+.++ ..+..+++||+.+||..
T Consensus       168 ~~~~~yp~~~~~D~e~~k~e~~se~~a~~~c~~~i~~~~~~e~~~~e~~~~~~~~~~e~~~k~~~~~d~~~~~~~~wR~~  247 (345)
T KOG2752|consen  168 TFLEDYPEQGKDDAEEVKPEQNSEKCAGSSCSEDIQDVPKNESLNDESESGCKLQLLENFRKQLKKKDGAAFWTNNWRSK  247 (345)
T ss_pred             chhhccccccccccccCCccccCccccccccHHHHHhcccCCCCccccccCCcHHHHHhhHhhcccCCcccchhhhHHHh
Confidence               1122     222         23334455566666666644422111111   111111 22356889999999999


Q ss_pred             cCCcccccccc
Q psy16699        217 LCSCEKCLDQQ  227 (231)
Q Consensus       217 LC~C~~C~~~~  227 (231)
                      ||+|++|+++|
T Consensus       248 LC~Ce~Cl~mY  258 (345)
T KOG2752|consen  248 LCTCEDCLEMY  258 (345)
T ss_pred             hcchHHhhhhh
Confidence            99999999998

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.12  E-value=1.8e-11  Score=90.01  Aligned_cols=62  Identities=40%  Similarity=0.900  Sum_probs=42.4

Q ss_pred             CCccccCcccccceeecccCCCCCCCCceeeccc-cchhcCCcccccccccc---cCCCCCCCCcc--ceee
Q psy16699         35 NCTYSQGYMKRQALYACLTCTPDICDPAGFCLAC-NYHCHEGHNIVELYTKR---CDCGNSKFGEK--KCNL  100 (231)
Q Consensus        35 ~CTy~~gy~~rQ~~y~C~TC~~~~~~~~gvC~~C-s~~CH~gH~lvel~~kR---CDCG~~~~~~~--~C~L  100 (231)
                      .|||..+..  |.+|.|+||..+  ...+||..| +..||.||+++.+++.+   ||||+......  .|++
T Consensus         2 ~C~~~~~~~--q~~y~C~tC~~~--~~~~iC~~CF~~~~H~gH~~~~~~~~~~~~CDCG~~~~~k~~~~C~~   69 (71)
T PF02207_consen    2 KCTYVWTSG--QIFYRCLTCSLD--ESSGICEECFANSCHEGHRVVYYRSSSGGCCDCGDPEAWKKEGFCKK   69 (71)
T ss_dssp             SS--B--TT---EEEEETTTBSS--TT-BBEHHHHCTSGGGGSSEEEEE--SCEBB-TT-GGGBSS--S-TT
T ss_pred             cCCCCCcCC--CEEEECccCCCC--CCEEEchhhCCCCCcCCCcEEEEEeCCCeEEeCCCCccccCCCCCCC
Confidence            588875554  999999999874  479999999 99999999999999984   99999887432  3654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway

Probab=98.90  E-value=1.2e-09  Score=80.72  Aligned_cols=61  Identities=38%  Similarity=0.822  Sum_probs=48.2

Q ss_pred             CCccccCcccccceeecccCCCCCCCCceeeccccc-hhcCCcccccccccc----cCCCCCCC--Cccceee
Q psy16699         35 NCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNY-HCHEGHNIVELYTKR----CDCGNSKF--GEKKCNL  100 (231)
Q Consensus        35 ~CTy~~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~-~CH~gH~lvel~~kR----CDCG~~~~--~~~~C~L  100 (231)
                      .|+|..++.  +.+|.|+||..++  ..+||..|.. .||.||++ .+++.|    ||||++..  +...|++
T Consensus         2 ~C~~~~~~~--~~~y~C~tC~~~~--~~~iC~~Cf~~~~H~gH~~-~~~~~~~~~~CDCG~~~~~~~~~~C~~   69 (71)
T smart00396        2 VCTYKFTGG--EVIYRCKTCGLDP--TCVLCSDCFRSNCHKGHDY-SLKTSRGSGICDCGDKEAWNEDLKCKA   69 (71)
T ss_pred             CCCCccCCC--CEEEECcCCCCCC--CEeEChHHCCCCCCCCCCE-EEEEecCCEEECCCChhccCCCccccc
Confidence            699998877  6679999998744  7899999999 99999994 566665    99999853  3334654

Domain is involved in recognition of N-end rule substrates in yeast Ubr1p

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.64  E-value=5e-09  Score=71.26  Aligned_cols=50  Identities=26%  Similarity=0.733  Sum_probs=36.4

Q ss_pred             eE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        121 YC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       121 YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      || +|+++.  +    ++.||+|+.|..|||..|++++.. +.......|+|+.|..+
T Consensus         1 ~C~vC~~~~--~----~~~~i~C~~C~~~~H~~C~~~~~~-~~~~~~~~w~C~~C~~~   51 (51)
T PF00628_consen    1 YCPVCGQSD--D----DGDMIQCDSCNRWYHQECVGPPEK-AEEIPSGDWYCPNCRPK   51 (51)
T ss_dssp             EBTTTTSSC--T----TSSEEEBSTTSCEEETTTSTSSHS-HHSHHSSSBSSHHHHHC
T ss_pred             eCcCCCCcC--C----CCCeEEcCCCChhhCcccCCCChh-hccCCCCcEECcCCcCc
Confidence            57 888843  2    689999999999999999998311 11112238999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>smart00249 PHD PHD zinc finger

Probab=98.51  E-value=6.9e-08  Score=62.68  Aligned_cols=44  Identities=30%  Similarity=0.794  Sum_probs=35.1

Q ss_pred             EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccc
Q psy16699        123 TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASC  174 (231)
Q Consensus       123 ~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C  174 (231)
                      +|+++++      .+.||+|+.|+.|||..|++.+  .........|+|+.|
T Consensus         4 ~C~~~~~------~~~~i~C~~C~~~~H~~C~~~~--~~~~~~~~~~~C~~C   47 (47)
T smart00249        4 VCGKPDD------GGELLQCDGCDRWYHQTCLGPP--LLEEEPDGKWYCPKC   47 (47)
T ss_pred             cCCCcCC------CCCEEECCCCCchhhhhhCCCc--ccCCCCCCCEECcCC
Confidence            7888772      5799999999999999999973  223456678899876

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG1777|consensus

Probab=98.51  E-value=1.9e-08  Score=96.83  Aligned_cols=82  Identities=27%  Similarity=0.697  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCccc---cCcccccceeecccCCCCCCCCceeeccccchhcCCcccccccccc--cC
Q psy16699         13 VLALQDHLEESAVAVLGAADDKNCTYS---QGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKR--CD   87 (231)
Q Consensus        13 ~l~~q~~le~eA~~~l~~~d~~~CTy~---~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel~~kR--CD   87 (231)
                      +.+.++..|+..+       ...|.|.   ..+.|+..+|+|.||+.++  ..+||.+|...||+||++.-+...|  ||
T Consensus       530 iydN~D~vekAik-------~GqCLfkvSs~~syPMHnFYRC~TCNttd--RNAIC~nCI~~CH~GH~Vefir~Drffcd  600 (625)
T KOG1777|consen  530 IYDNLDHVEKAIK-------KGQCLFKVSSYTSYPMHNFYRCITCNTTD--RNAICVNCIKRCHEGHDVEFIRHDRFFCD  600 (625)
T ss_pred             cccchHHHHHHhh-------cCceEEEecCCCcccccceeEeeecCCcc--ccHHHHHHHHHhcCCCceEEEeeceEEEe
Confidence            4445555554432       4579997   3344589999999998754  8899999999999999999888888  99


Q ss_pred             CCCCCCCccceeecCCC
Q psy16699         88 CGNSKFGEKKCNLEPNK  104 (231)
Q Consensus        88 CG~~~~~~~~C~L~~~k  104 (231)
                      ||++.... .|.|....
T Consensus       601 cgagtl~~-~c~lq~ep  616 (625)
T KOG1777|consen  601 CGAGTLSN-VCDLQGEP  616 (625)
T ss_pred             cCCceecc-eeeccCCc
Confidence            99999875 79988664

>KOG2752|consensus

Probab=98.50  E-value=7.4e-08  Score=89.05  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=109.6

Q ss_pred             eeeccccchhcCCcccccccccccCCCCCCCCccceeecCCCCcCCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceec
Q psy16699         63 GFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQC  142 (231)
Q Consensus        63 gvC~~Cs~~CH~gH~lvel~~kRCDCG~~~~~~~~C~L~~~k~~~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC  142 (231)
                      +++..++..+|-     .+-..+++++++.+...-+.|.+.+++.+..++|+.++.+.+++|-+++|+|     +.|++|
T Consensus         2 ~~~~~e~ee~~~-----tiT~~e~vE~~~~lE~~a~~vL~~~~~~~CTy~~Gy~~rQ~l~sClTC~P~~-----~~agvC   71 (345)
T KOG2752|consen    2 DDGVEETEEIAP-----TITLGEYVEQIDELEDEADVVLGTQNPDVCTYAKGYKKRQALFSCLTCTPAP-----EMAGVC   71 (345)
T ss_pred             Ccchhcchhccc-----cccHHHHHHhHHHHHHHHHhhcCCCCCcccccccCcccccceeEeecccCCh-----hhceeE
Confidence            345556666654     1122239999999998889999999999999999999999999999999865     499999


Q ss_pred             cccccccccCCCCCC------------------------------------------------CCCCCCC----------
Q psy16699        143 ALCEDWFHSGHLGLD------------------------------------------------SPIPDGE----------  164 (231)
Q Consensus       143 ~~CEDWFH~~Clg~~------------------------------------------------~~~~~~~----------  164 (231)
                      ..|..|+|..|+.+.                                                ...|++.          
T Consensus        72 ~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC  151 (345)
T KOG2752|consen   72 YACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQC  151 (345)
T ss_pred             EEeeeeecCCceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeE
Confidence            999999999998651                                                0112211          


Q ss_pred             --cccccccccccccCcccccccccccCCCc-------cC------------CCC------CCCCCCcceeecchhhhcc
Q psy16699        165 --DYSEMSCASCINMYPVLKLYPHLLECPIK-------DK------------DVS------SIPPVTEAFFWQEGWRSQL  217 (231)
Q Consensus       165 --~~~~fiC~~C~~k~~~L~~y~~~~~~~~~-------~~------------~~~------~~~~~~~~~f~~~~wr~~L  217 (231)
                        --|-|+|-.|++..+|+..|+..-..++.       |.            +++      .+.....+++-.+++|+.|
T Consensus       152 ~iCEDWFHce~c~~~~~~~~~yp~~~~~D~e~~k~e~~se~~a~~~c~~~i~~~~~~e~~~~e~~~~~~~~~~e~~~k~~  231 (345)
T KOG2752|consen  152 VICEDWFHCEGCMQAKTFLEDYPEQGKDDAEEVKPEQNSEKCAGSSCSEDIQDVPKNESLNDESESGCKLQLLENFRKQL  231 (345)
T ss_pred             EeccchhcccccCcccchhhccccccccccccCCccccCccccccccHHHHHhcccCCCCccccccCCcHHHHHhhHhhc
Confidence              13457788999999999999943222211       00            011      0223456677888999999


Q ss_pred             CCccccc
Q psy16699        218 CSCEKCL  224 (231)
Q Consensus       218 C~C~~C~  224 (231)
                      +++..+.
T Consensus       232 ~~~d~~~  238 (345)
T KOG2752|consen  232 KKKDGAA  238 (345)
T ss_pred             ccCCccc
Confidence            9998854

>KOG1973|consensus

Probab=98.36  E-value=2.8e-07  Score=83.64  Aligned_cols=57  Identities=25%  Similarity=0.568  Sum_probs=42.8

Q ss_pred             CCCcCCCCcceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        110 NNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       110 ~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      .......-...||+|.+.-       .+.||.|+.  |. +|||..|||+.  .+   ..+.++|+.|....
T Consensus       210 ~~~~~d~~e~~yC~Cnqvs-------yg~Mi~CDn~~C~~eWFH~~CVGL~--~~---PkgkWyC~~C~~~~  269 (274)
T KOG1973|consen  210 SEEAVDPDEPTYCICNQVS-------YGKMIGCDNPGCPIEWFHFTCVGLK--TK---PKGKWYCPRCKAEN  269 (274)
T ss_pred             cccccCCCCCEEEEecccc-------cccccccCCCCCCcceEEEeccccc--cC---CCCcccchhhhhhh
Confidence            3344444567999999542       699999997  98 99999999993  32   23459999997653

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=97.92  E-value=6.3e-06  Score=74.56  Aligned_cols=47  Identities=30%  Similarity=0.834  Sum_probs=38.3

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccc--c-ccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCAL--C-EDWFHSGHLGLDSPIPDGEDYSEMSCASCIN  176 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--C-EDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~  176 (231)
                      ..+||.|+++-       -+.||.|+.  | .+|||..|||+. ..|.    ..|+|+.|..
T Consensus       220 e~lYCfCqqvS-------yGqMVaCDn~nCkrEWFH~~CVGLk-~pPK----G~WYC~eCk~  269 (271)
T COG5034         220 EELYCFCQQVS-------YGQMVACDNANCKREWFHLECVGLK-EPPK----GKWYCPECKK  269 (271)
T ss_pred             ceeEEEecccc-------cccceecCCCCCchhheeccccccC-CCCC----CcEeCHHhHh
Confidence            46999999984       589999995  9 899999999994 2222    4789999964

>KOG1632|consensus

Probab=97.56  E-value=3e-05  Score=72.83  Aligned_cols=69  Identities=26%  Similarity=0.585  Sum_probs=54.2

Q ss_pred             CCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCC--CCCCCCCCCCCcccccccccccccCccccccc
Q psy16699        110 NNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGH--LGLDSPIPDGEDYSEMSCASCINMYPVLKLYP  185 (231)
Q Consensus       110 ~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~C--lg~~~~~~~~~~~~~fiC~~C~~k~~~L~~y~  185 (231)
                      ......+....||.|.+++ +|    +.+|+||+.|++|||+.|  +|+  ...++...+.++|..|.....-+..+.
T Consensus        51 ~~~~~~a~~~~~~~~~~~~-~p----~~~~~~cd~C~~~~~~ec~~v~~--~~~e~p~~~~~~c~~c~~~~~~~~~~~  121 (345)
T KOG1632|consen   51 RGGLLKALTQRYCKCYKPC-DP----DDLMEQCDLCEDWYHGECWEVGT--AEKEAPKEDPKVCDECKEAQDGMSESD  121 (345)
T ss_pred             cccccHhhhhchhhccccc-Cc----hhhhhccccccccccccccccCc--hhhcCCccccccccccchhhhhhhhhc
Confidence            3344455566799999998 45    459999999999999999  998  566778899999999987765555443

>KOG4323|consensus

Probab=97.49  E-value=5.1e-05  Score=73.69  Aligned_cols=71  Identities=20%  Similarity=0.412  Sum_probs=54.2

Q ss_pred             CCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCC-CCCCCCCCcccccccccccccCcccccccc
Q psy16699        110 NNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGL-DSPIPDGEDYSEMSCASCINMYPVLKLYPH  186 (231)
Q Consensus       110 ~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~-~~~~~~~~~~~~fiC~~C~~k~~~L~~y~~  186 (231)
                      +-.+--|.+-.||.|.+|-.     ++ -||||..|..|||..|..- .+.....|.+.+|+|..|..+..++.+...
T Consensus       162 D~~~~~n~qc~vC~~g~~~~-----~N-rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~  233 (464)
T KOG4323|consen  162 DSGHKVNLQCSVCYCGGPGA-----GN-RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTL  233 (464)
T ss_pred             CccccccceeeeeecCCcCc-----cc-eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcccccc
Confidence            45566676778999998853     34 9999999999999999853 223345678999999999998877765443

>KOG0943|consensus

Probab=96.27  E-value=0.0012  Score=70.60  Aligned_cols=55  Identities=27%  Similarity=0.678  Sum_probs=42.9

Q ss_pred             CCCccc---cCcccccceeecccCCCCCCCCceeeccccchhcCCcccccccccc---cCCCCC
Q psy16699         34 KNCTYS---QGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKR---CDCGNS   91 (231)
Q Consensus        34 ~~CTy~---~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel~~kR---CDCG~~   91 (231)
                      +.|+|+   ...| .|.+|-|+||+...  +...|.-|+.+||.||+-.=..|.-   |||=-+
T Consensus      1241 DtCSFTWTGadHI-NQDIfECkTCGL~~--SLCCCsECAltCHk~HDCkLKRTSPTAYCDCWEK 1301 (3015)
T KOG0943|consen 1241 DTCSFTWTGADHI-NQDIFECKTCGLLE--SLCCCSECALTCHKGHDCKLKRTSPTAYCDCWEK 1301 (3015)
T ss_pred             Cccceeecchhhc-cchhhhhcccccch--hhhhhHHHHHHhccCCccceeccCCcceeehhhc
Confidence            469998   4588 99999999998854  7789999999999999953222211   999755

>KOG1776|consensus

Probab=95.33  E-value=0.007  Score=61.87  Aligned_cols=57  Identities=16%  Similarity=0.115  Sum_probs=47.5

Q ss_pred             CCCccc---cCcccccceeecccCCCCCCCCceeeccccchhcCCcccccccccc---cCCCCCCCC
Q psy16699         34 KNCTYS---QGYMKRQALYACLTCTPDICDPAGFCLACNYHCHEGHNIVELYTKR---CDCGNSKFG   94 (231)
Q Consensus        34 ~~CTy~---~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel~~kR---CDCG~~~~~   94 (231)
                      ..|||.   +-|+ -|.+|.|.||...- ...|+|..||+.||.+|++-  +.+.   ||||-++.+
T Consensus       765 ~~~T~Kkk~q~~m-~n~~~q~~k~~M~~-~~gG~~kV~s~t~H~~~~i~--~S~~~~~C~C~Es~~~  827 (1110)
T KOG1776|consen  765 RDETEKKKKQMAM-LNREKQLTKMRMKV-GTGGQIKVSSRTLHNEPSID--DSDSLPCCICRESVIS  827 (1110)
T ss_pred             HHHHHhhhhhHHH-HHHHhhhhhheeee-ccCceEEEeeecccCCCCcc--ccCCCceeeccccccc
Confidence            359997   4588 99999999998752 24699999999999999996  5566   999998876

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.49  E-value=0.52  Score=30.42  Aligned_cols=29  Identities=31%  Similarity=0.734  Sum_probs=25.3

Q ss_pred             ceeecccCCCCCCCCceeeccccchhcCCcccccc
Q psy16699         47 ALYACLTCTPDICDPAGFCLACNYHCHEGHNIVEL   81 (231)
Q Consensus        47 ~~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel   81 (231)
                      ..|-|.+|.      ..||..|...=|.+|.++.|
T Consensus        14 ~~~~C~~C~------~~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen   14 LSLFCEDCN------EPLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             EEEEETTTT------EEEEHHHHHTSTTTSEEEEC
T ss_pred             eEEEecCCC------CccCccCCCCCCCCCEEeEC
Confidence            788999995      58999999888999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG1844|consensus

Probab=84.83  E-value=0.77  Score=44.35  Aligned_cols=64  Identities=22%  Similarity=0.371  Sum_probs=49.2

Q ss_pred             cCCCCCCcCCCC--cceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        106 ALNVNNTYNQNF--KGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       106 ~~n~~N~Yn~Nf--~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      ..+....++-+.  ...-|+|+.-.. .    ++.||||..|..|=|.-|+|.   +.. ..-+.|.|..|..+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~c~c~~~~~-~----~g~~i~c~~c~~Wqh~~C~g~---~~~-~~p~~y~c~~c~~~~  136 (508)
T KOG1844|consen   71 LLSLNGSEAGSEAREISRCDCGLEDD-M----EGLMIQCDWCGRWQHKICCGS---FKS-TKPDKYVCEICTPRN  136 (508)
T ss_pred             cccccccccccCcCcccccccccccC-C----CceeeCCcccCcccCceeeee---cCC-CCchhceeeeecccc
Confidence            355566777666  677899998762 2    589999999999999999986   222 226899999998765

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=83.20  E-value=0.23  Score=32.22  Aligned_cols=34  Identities=24%  Similarity=0.660  Sum_probs=18.3

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCcccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASC  174 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C  174 (231)
                      ..||+|..|.=..|.+|-|+.. .++   .+.|+|..|
T Consensus         2 n~ll~C~~C~v~VH~~CYGv~~-~~~---~~~W~C~~C   35 (36)
T PF13831_consen    2 NPLLFCDNCNVAVHQSCYGVSE-VPD---GDDWLCDRC   35 (36)
T ss_dssp             CEEEE-SSS--EEEHHHHT-SS---S---S-----HHH
T ss_pred             CceEEeCCCCCcCChhhCCccc-CCC---CCcEECCcC
Confidence            4799999999999999999832 222   223888877

>KOG0825|consensus

Probab=82.04  E-value=0.81  Score=47.93  Aligned_cols=46  Identities=24%  Similarity=0.523  Sum_probs=34.2

Q ss_pred             EeCCCCCCCCCCCCccceeccccccc-cccCCCCCCCCCCCCCccccccccccccc
Q psy16699        123 TCARPYPDEENPNCDEMIQCALCEDW-FHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       123 ~C~~pYpdpe~~~~~~MIQC~~CEDW-FH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ||..+  ||    .+.||-|+.|.+= ||..||..+  . ..--+..|+|..|+-.
T Consensus       220 IC~~~--Dp----EdVLLLCDsCN~~~YH~YCLDPd--l-~eiP~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  220 ICTVH--DP----EDVLLLCDSCNKVYYHVYCLDPD--L-SESPVNEWYCTNCSLL  266 (1134)
T ss_pred             eeccC--Ch----HHhheeecccccceeeccccCcc--c-ccccccceecCcchhh
Confidence            56666  34    4799999999766 999999862  1 1234678999999854

>KOG1632|consensus

Probab=81.19  E-value=0.24  Score=46.77  Aligned_cols=54  Identities=20%  Similarity=0.386  Sum_probs=36.9

Q ss_pred             CcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccc----cccccccc
Q psy16699        117 FKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSE----MSCASCIN  176 (231)
Q Consensus       117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~----fiC~~C~~  176 (231)
                      ..+.+|..-..-.   .. ..+||.|.+|+.|||+.|+.+  ..........    |+|+.|..
T Consensus       237 ~~~~~~~~cg~~~---~~-~~~~~~~~~~e~w~~~~~v~~--~~a~~~~~~~~~~~~~c~~~~~  294 (345)
T KOG1632|consen  237 YSKLICDPCGLSD---AN-KKFEICCDLCESWFHGDCVQI--FEARKRLNEIRNEVYKCPHCTV  294 (345)
T ss_pred             cccccccccCcch---HH-HHHHHHHHHHHHHhccccccc--ccchhhhhhhhccceecCceee
Confidence            4456676554421   11 379999999999999999998  2222233444    99999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	3e-05
3kv5_D	488	JMJC domain-containing histone demethylation prote	3e-04
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	8e-04

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 110 NNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEM 169
           + +        YC C +PY          MI+C LC+DWFH   +G++    +  D    
Sbjct: 3   SGSSGMALVPVYCLCRQPYNVNH-----FMIECGLCQDWFHGSCVGIEE--ENAVDIDIY 55

Query: 170 SCASC 174
            C  C
Sbjct: 56  HCPDC 60

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDG-EDYSEMSCASCINMYP 179
           YC C +PY D        MI+C +C+DWFH   +G++       + Y   +CA       
Sbjct: 39  YCVCRQPY-DVNRF----MIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSL 93

Query: 180 VLKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPD 230
           + K          +  D S         F +E       S ++ + +    
Sbjct: 94  MKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGS 144

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPV 180
           YC C  PY          MI+C +C+DWFH   +G+        D     C +C  ++  
Sbjct: 7   YCLCRLPYDVTR-----FMIECDMCQDWFHGSCVGV--EEEKAADIDLYHCPNCEVLHGP 59

Query: 181 LKLYPHLLECPIKDKDVSSIPPVTEAFFWQEGWRSQLCSCEKCLDQQIPDL 231
             +                 P  T +  +    RS+       +  +    
Sbjct: 60  SIMKKR-RGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPTGN 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	99.65
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	99.62
1we9_A	64	PHD finger family protein; structural genomics, PH	99.55
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	99.5
1wem_A	76	Death associated transcription factor 1; structura	99.47
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	99.43
1wee_A	72	PHD finger family protein; structural genomics, PH	99.34
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	99.28
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	99.28
3kv5_D	488	JMJC domain-containing histone demethylation prote	99.28
1wew_A	78	DNA-binding family protein; structural genomics, P	99.19
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	99.11
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	99.09
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	99.07
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	99.06
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	99.06
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	99.05
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	99.03
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	99.03
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	99.0
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.99
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.97
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	98.96
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.88
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.83
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	98.62
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	98.56
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.14
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	97.72
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	97.63
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	97.56
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	97.28
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	97.02
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	97.01
2yt5_A	66	Metal-response element-binding transcription facto	96.95
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	96.89
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	96.88
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	96.87
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	96.86
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	96.67
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	96.65
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	96.65
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	96.26
3ny3_A	75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	96.24
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	95.99
3nis_A	82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	95.91
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.83
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	95.8
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	95.77
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	95.59
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	95.14
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	94.26
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	94.21
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	91.77
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	90.52
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	89.18
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	87.84
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	84.98

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=99.65  E-value=3e-17  Score=119.29  Aligned_cols=63  Identities=17%  Similarity=0.396  Sum_probs=46.2

Q ss_pred             CcCCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        105 DALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       105 ~~~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      .+++++|+|++++.++||+|+++++      +++||||+.|++|||..|+|+...    ...+.|+|+.|...
T Consensus         5 ~~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~----~~~~~~~C~~C~~s   67 (68)
T 3o70_A            5 HHHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS----NVPEVFVCQKCRDS   67 (68)
T ss_dssp             ---------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT----SCCSSCCCHHHHTC
T ss_pred             ccCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc----cCCCcEECCCCCCC
Confidence            3578899999999999999999984      479999999999999999998422    22369999999754

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.62  E-value=3.4e-17  Score=121.36  Aligned_cols=69  Identities=28%  Similarity=0.735  Sum_probs=55.9

Q ss_pred             CCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC--cccccc
Q psy16699        109 VNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY--PVLKLY  184 (231)
Q Consensus       109 ~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~--~~L~~y  184 (231)
                      +...|++|...+||+|++||+ +    +++||||+.|++|||..||++  +....+.++.|+|+.|..+.  +++++.
T Consensus         2 ~~~~~~~~~~~~~C~C~~~~d-~----~~~MIqCd~C~~WfH~~Cvgl--~~~~~~~~~~~~C~~C~~~~~~~~~K~~   72 (79)
T 1wep_A            2 SSGSSGMALVPVYCLCRQPYN-V----NHFMIECGLCQDWFHGSCVGI--EEENAVDIDIYHCPDCEAVFGPSIMKNW   72 (79)
T ss_dssp             CSCCCCCCCCCCCSTTSCSCC-S----SSCEEEBTTTCCEEEHHHHTC--CHHHHTTCSBBCCTTTTTTSCSCBCCCC
T ss_pred             CCCccCccCCccEEEcCCccC-C----CCceEEcCCCCCcEEeeecCc--ccccccCCCeEECCCcccccCCCceeee
Confidence            457899999999999999994 2    589999999999999999998  33334457899999998764  444443

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=99.55  E-value=1.3e-15  Score=108.22  Aligned_cols=56  Identities=29%  Similarity=0.630  Sum_probs=47.2

Q ss_pred             CCcceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        116 NFKGKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       116 Nf~g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      +..+.|| +|++||+ +    +++||||+.|++|||..|+|+  +...++.++.|+|+.|..+.
T Consensus         3 ~~e~~~C~~C~~~~~-~----~~~mI~Cd~C~~WfH~~Cvgl--~~~~~~~~~~~~C~~C~~k~   59 (64)
T 1we9_A            3 SGSSGQCGACGESYA-A----DEFWICCDLCEMWFHGKCVKI--TPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             CSSCCCCSSSCCCCC-S----SSCEEECSSSCCEEETTTTTC--CTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCCCCCCCCCccC-C----CCCEEEccCCCCCCCccccCc--ChhHhcCCCcEECCCCcCcC
Confidence            5678999 9999995 2    579999999999999999999  44445567899999998764

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=99.50  E-value=1.2e-15  Score=111.99  Aligned_cols=57  Identities=30%  Similarity=0.730  Sum_probs=48.4

Q ss_pred             CCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        114 NQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       114 n~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +-|..++||+|++||+ +    +++||||+.|++|||..|||+  +...+..++.|+|+.|..+
T Consensus         5 ~~~~~~~yCiC~~~~~-~----~~~MI~Cd~C~~WfH~~Cvg~--~~~~~~~~~~~~C~~C~~~   61 (75)
T 3kqi_A            5 SMATVPVYCVCRLPYD-V----TRFMIECDACKDWFHGSCVGV--EEEEAPDIDIYHCPNCEKT   61 (75)
T ss_dssp             TTCCCCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTC--CTTTGGGBSSCCCHHHHHH
T ss_pred             CCCCCeeEEECCCcCC-C----CCCEEEcCCCCCCEecccccc--cccccCCCCEEECCCCccc
Confidence            4577899999999984 2    589999999999999999999  4445566789999999866

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.47  E-value=1e-15  Score=112.40  Aligned_cols=62  Identities=29%  Similarity=0.731  Sum_probs=49.8

Q ss_pred             cCCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCC----ccccccccccccc
Q psy16699        106 ALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGE----DYSEMSCASCINM  177 (231)
Q Consensus       106 ~~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~----~~~~fiC~~C~~k  177 (231)
                      ..|+.|.|++|  ++||+|++||+      .++||||+.|++|||..|||+.  ...++    ..+.|+|+.|..+
T Consensus         5 ~~~e~~~~d~~--~~~C~C~~~~~------~~~MI~Cd~C~~WfH~~Cvgl~--~~~~~~l~~~~~~~~C~~C~~~   70 (76)
T 1wem_A            5 SSGECEVYDPN--ALYCICRQPHN------NRFMICCDRCEEWFHGDCVGIS--EARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCCCCCSCCTT--CCCSTTCCCCC------SSCEEECSSSCCEEEHHHHSCC--HHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CcCCccccCCC--CCEEECCCccC------CCCEEEeCCCCCcEeCeEEccc--hhhhhhccCCCCeEECcCCcCc
Confidence            34667889888  79999999984      4799999999999999999983  22211    3478999999865

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=99.43  E-value=2.3e-14  Score=98.49  Aligned_cols=50  Identities=22%  Similarity=0.632  Sum_probs=41.7

Q ss_pred             CcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699        117 FKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN  176 (231)
Q Consensus       117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~  176 (231)
                      |+.+||+|++|++      +++||||+.|++|||..|+|++..    +..+.|+|+.|.+
T Consensus         2 ~d~~~C~C~~~~~------~~~MI~Cd~C~~W~H~~Cvgi~~~----~~~~~~~C~~C~~   51 (52)
T 3o7a_A            2 WDLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS----NVPEVFVCQKCRD   51 (52)
T ss_dssp             TTCBCSTTCCBCT------TCCEEECTTTCCEEETTTTTCCGG----GCCSSCCCHHHHT
T ss_pred             CcCeEEEeCCcCC------CCCEEEcCCCCccccccccCCCcc----cCCCcEECcCCCC
Confidence            6789999999974      479999999999999999998421    2236999999964

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=99.34  E-value=4.3e-13  Score=97.58  Aligned_cols=54  Identities=26%  Similarity=0.619  Sum_probs=43.5

Q ss_pred             CCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        116 NFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       116 Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +-..+||+|++++++     ..+||||+.|++|||..|+++..  .. ...+.|+|+.|..+
T Consensus        13 ~~~~~~C~C~~~~~~-----g~~mI~Cd~C~~W~H~~Cvg~~~--~~-~~~~~~~C~~C~~~   66 (72)
T 1wee_A           13 DNWKVDCKCGTKDDD-----GERMLACDGCGVWHHTRCIGINN--AD-ALPSKFLCFRCIEL   66 (72)
T ss_dssp             CSSEECCTTCCCSCC-----SSCEEECSSSCEEEETTTTTCCT--TS-CCCSCCCCHHHHHH
T ss_pred             CCcceEeeCCCccCC-----CCcEEECCCCCCccCCeeeccCc--cc-cCCCcEECCCccCC
Confidence            456899999999842     45899999999999999999842  21 24579999999865

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=99.28  E-value=2.3e-13  Score=93.52  Aligned_cols=47  Identities=30%  Similarity=0.723  Sum_probs=37.0

Q ss_pred             eEEeCCCCCCCCCCCCccceecc-ccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699        121 YCTCARPYPDEENPNCDEMIQCA-LCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI  175 (231)
Q Consensus       121 YC~C~~pYpdpe~~~~~~MIQC~-~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~  175 (231)
                      -|+|++||+|     +++||||+ .|++|||..|+|++  .+.++ .+.|+|+.|.
T Consensus         5 cc~C~~p~~~-----~~~mI~Cd~~C~~WfH~~Cvgl~--~~~~~-~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKD-----KVDWVQCDGGCDEWFHQVCVGVS--PEMAE-NEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCT-----TCCEEECTTTTCCEEETTTTTCC--HHHHH-HSCCCCSCC-
T ss_pred             CCCCcCccCC-----CCcEEEeCCCCCccCcccccCCC--ccccC-CCCEECCCCC
Confidence            4789999952     57999999 99999999999993  22222 3789999984

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=99.28  E-value=1.9e-13  Score=116.30  Aligned_cols=64  Identities=27%  Similarity=0.564  Sum_probs=48.5

Q ss_pred             cceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCc------ccccccccccccCccccccc
Q psy16699        118 KGKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGED------YSEMSCASCINMYPVLKLYP  185 (231)
Q Consensus       118 ~g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~------~~~fiC~~C~~k~~~L~~y~  185 (231)
                      .|.|| +|+++|++. +. +..||||+.|++|||..|+|+.  ...++.      ...|+|+.|..+.+.+++++
T Consensus         1 ~G~~CpiC~k~Y~~~-~~-~~~MIqCd~C~~W~H~~Cvgi~--~~~~e~~~~~pe~~~y~Cp~C~~~~~~~~~~~   71 (183)
T 3lqh_A            1 SGNFCPLCDKCYDDD-DY-ESKMMQCGKCDRWVHSKCENLS--DEMYEILSNLPESVAYTCVNCTERHPAEWRLA   71 (183)
T ss_dssp             -CCBCTTTCCBCTTC-CT-TCCEEECTTTCCEEEGGGSSCC--HHHHHHHHHSHHHHCCCCTTTCCSSSCHHHHH
T ss_pred             CcCcCCCCcCccCCc-cc-CCCeEECCCCCcccchhccccC--HHHHHHhhcCCCCCeeECcCCCCCCCHHHHHH
Confidence            37899 699999643 21 4679999999999999999983  221222      24899999999988887653

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=99.28  E-value=2.2e-13  Score=130.51  Aligned_cols=70  Identities=26%  Similarity=0.557  Sum_probs=53.0

Q ss_pred             CCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc-Cccccc
Q psy16699        107 LNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM-YPVLKL  183 (231)
Q Consensus       107 ~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k-~~~L~~  183 (231)
                      .+..+.|++|..++||+|++||+ +    +++||||+.|++|||..|+|+  ....++.++.|+|+.|..+ .+.+.+
T Consensus        25 s~~~~s~~~~~~~~yC~C~~~~d-~----~~~MIqCd~C~~WfH~~Cvgl--~~~~~~~~~~~~C~~C~~~~~~~~~k   95 (488)
T 3kv5_D           25 APGRASAPPPPPPVYCVCRQPYD-V----NRFMIECDICKDWFHGSCVGV--EEHHAVDIDLYHCPNCAVLHGSSLMK   95 (488)
T ss_dssp             -------CCCCCCEETTTTEECC-T----TSCEEEBTTTCCEEEHHHHTC--CGGGGGGEEEBCCHHHHHHHCSCEEC
T ss_pred             CCCCCCCcCCCCCeEEeCCCcCC-C----CCCeEEccCCCCceeeeecCc--CcccccCCCEEECCCCcCCcCcchhc
Confidence            33456899999999999999984 3    589999999999999999999  4445567889999999866 354443

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=99.19  E-value=2.3e-12  Score=95.25  Aligned_cols=54  Identities=26%  Similarity=0.472  Sum_probs=42.8

Q ss_pred             cceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCC--CCCccccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIP--DGEDYSEMSCASCINM  177 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~--~~~~~~~fiC~~C~~k  177 (231)
                      ..+||+|+++.+      .++||||+  .|+.|||..|||+.....  ..+..+.|+|+.|..+
T Consensus        15 ~~~~CiC~~~~~------~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~   72 (78)
T 1wew_A           15 IKVRCVCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT   72 (78)
T ss_dssp             CCCCCSSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred             CCEEeECCCcCC------CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence            679999999853      57999999  999999999999942211  1145689999999765

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=99.11  E-value=2.1e-11  Score=87.89  Aligned_cols=53  Identities=25%  Similarity=0.469  Sum_probs=39.9

Q ss_pred             cceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCCC-CCcccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIPD-GEDYSEMSCASCIN  176 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~~-~~~~~~fiC~~C~~  176 (231)
                      ..+||+|+.+++      +++||||+  .|+.|||..|||+...... .+..+.|+|+.|..
T Consensus         9 ~~v~C~C~~~~~------~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~   64 (68)
T 2rsd_A            9 AKVRCICSSTMV------NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL   64 (68)
T ss_dssp             CEECCTTCCCSC------CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred             CCEEeECCCCcC------CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence            358999998863      57999999  4999999999998422211 12336899999964

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=99.09  E-value=1.4e-11  Score=87.01  Aligned_cols=48  Identities=31%  Similarity=0.821  Sum_probs=39.1

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ..+||+|++++       .++||+|+.  |. +|||..|||+.. .|.    ..|+|+.|.++
T Consensus         8 e~~yC~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvgl~~-~p~----~~w~Cp~C~~~   58 (59)
T 3c6w_A            8 EPTYCLCHQVS-------YGEMIGCDNPDCPIEWFHFACVDLTT-KPK----GKWFCPRCVQE   58 (59)
T ss_dssp             CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS-CCS----SCCCCHHHHCC
T ss_pred             CCcEEECCCCC-------CCCeeEeeCCCCCCCCEecccCCccc-CCC----CCEECcCccCc
Confidence            56999999986       368999999  77 899999999842 222    57999999765

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=99.07  E-value=3.9e-12  Score=120.89  Aligned_cols=59  Identities=31%  Similarity=0.747  Sum_probs=47.9

Q ss_pred             CcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC-cccc
Q psy16699        117 FKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY-PVLK  182 (231)
Q Consensus       117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~-~~L~  182 (231)
                      ...+||+|++||+ +    +++||||+.|++|||..|+|+  +.+.++..+.|+|+.|..++ +.+.
T Consensus         3 ~~~~yCiC~~~~d-~----~~~MIqCD~C~~WfH~~CVgi--~~~~~~~~~~y~C~~C~~~~~~~~~   62 (447)
T 3kv4_A            3 SVPVYCLCRLPYD-V----TRFMIECDMCQDWFHGSCVGV--EEEKAADIDLYHCPNCEVLHGPSIM   62 (447)
T ss_dssp             CCCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTC--CHHHHTTEEECCCHHHHHHHCCCEE
T ss_pred             CCCeEEeCCCcCC-C----CCCeEEcCCCCcccccccCCc--CcccccCCCEEECCCCccccCCchh
Confidence            3579999999984 3    589999999999999999999  44445567899999998774 4433

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=99.06  E-value=3e-12  Score=92.15  Aligned_cols=50  Identities=20%  Similarity=0.513  Sum_probs=39.1

Q ss_pred             eeEEeCCCCCCCCCCCCccceecc-ccccccccCCCCCCCCCCCCCcc-----cccccccccc
Q psy16699        120 KYCTCARPYPDEENPNCDEMIQCA-LCEDWFHSGHLGLDSPIPDGEDY-----SEMSCASCIN  176 (231)
Q Consensus       120 ~YC~C~~pYpdpe~~~~~~MIQC~-~CEDWFH~~Clg~~~~~~~~~~~-----~~fiC~~C~~  176 (231)
                      .-.+|++||+ +    +.+||||+ .|++|||..|+|+  +...++.+     ..|+|+.|.+
T Consensus        10 ~C~~C~~p~~-~----~~~mI~CD~~C~~WfH~~Cvgl--t~~~~~~l~~e~~~~w~C~~C~~   65 (65)
T 2vpb_A           10 PCGICTNEVN-D----DQDAILCEASCQKWFHRICTGM--TETAYGLLTAEASAVWGCDTCMA   65 (65)
T ss_dssp             BCTTTCSBCC-T----TSCEEEBTTTTCCEEEHHHHTC--CHHHHHHHHHCTTEEECCHHHHC
T ss_pred             cCccCCCccC-C----CCCeEecccCccccCchhccCC--CHHHHHHhhccCCCcEECcCccC
Confidence            4568999996 3    57999999 9999999999999  33322222     4899999963

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=99.06  E-value=4.4e-12  Score=104.95  Aligned_cols=54  Identities=28%  Similarity=0.699  Sum_probs=44.4

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      .+.||+|++||+ +    .++||||+.|++|||..|+|+  +....+..+.|+|+.|..+.
T Consensus         7 ~~~~C~C~~~~~-~----~~~mi~Cd~C~~WfH~~Cv~~--~~~~~~~~~~~~C~~C~~~~   60 (174)
T 2ri7_A            7 TKLYCICKTPED-E----SKFYIGCDRCQNWYHGRCVGI--LQSEAELIDEYVCPQCQSTE   60 (174)
T ss_dssp             CCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTC--CHHHHTTCSSCCCHHHHHHH
T ss_pred             CCcEeeCCCCCC-C----CCCEeECCCCCchhChhhcCC--chhhccCccCeecCCCcchh
Confidence            578999999984 2    579999999999999999998  33333457899999998754

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=99.05  E-value=2.4e-11  Score=86.65  Aligned_cols=49  Identities=29%  Similarity=0.623  Sum_probs=39.3

Q ss_pred             cceeEEeCCCCCCCCCCCCccceecccc--c-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCALC--E-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~C--E-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      ..+||+|++++       .++||+|+.|  . +|||..|||+.. .|    ...|+|+.|.++.
T Consensus        10 e~~yC~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl~~-~p----~~~w~Cp~C~~~r   61 (62)
T 2g6q_A           10 EPTYCLCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSLTY-KP----KGKWYCPKCRGDN   61 (62)
T ss_dssp             CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS-CC----SSCCCCHHHHTCC
T ss_pred             CCcEEECCCCC-------CCCeeeeeCCCCCcccEecccCCcCc-CC----CCCEECcCcccCC
Confidence            46999999986       3689999994  4 999999999842 22    3689999998653

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=99.03  E-value=1.5e-10  Score=84.57  Aligned_cols=49  Identities=33%  Similarity=0.792  Sum_probs=39.8

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      ..+||+|++++       .++||+|+.  |. +|||..||++.. .|    ...|+|+.|..+.
T Consensus        15 ~~~~C~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvgl~~-~p----~g~w~Cp~C~~~~   66 (71)
T 1wen_A           15 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT-KP----RGKWFCPRCSQES   66 (71)
T ss_dssp             SCCCSTTCCCS-------CSSEECCSCSSCSCCCEETTTTTCSS-CC----SSCCCCTTTSSCS
T ss_pred             CCCEEECCCCC-------CCCEeEeeCCCCCCccEecccCCcCc-CC----CCCEECCCCCccc
Confidence            57999999986       368999999  77 899999999842 22    2579999998664

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=99.03  E-value=1.1e-11  Score=96.70  Aligned_cols=51  Identities=22%  Similarity=0.515  Sum_probs=39.7

Q ss_pred             EEeCCCCCCCCCCCCccceecc-ccccccccCCCCCCCCCCCCCcc-----cccccccccccCc
Q psy16699        122 CTCARPYPDEENPNCDEMIQCA-LCEDWFHSGHLGLDSPIPDGEDY-----SEMSCASCINMYP  179 (231)
Q Consensus       122 C~C~~pYpdpe~~~~~~MIQC~-~CEDWFH~~Clg~~~~~~~~~~~-----~~fiC~~C~~k~~  179 (231)
                      .+|++||++     +++||||+ .|++|||..|+|+  +....+.+     ..|+|+.|..+..
T Consensus         7 ~iC~~p~~~-----~~~mi~Cdd~C~~WfH~~CVgl--t~~~~~~i~~~~~~~~~Cp~C~~~~~   63 (105)
T 2xb1_A            7 GACRSEVND-----DQDAILCEASCQKWFHRECTGM--TESAYGLLTTEASAVWACDLCLKTKE   63 (105)
T ss_dssp             TTTCSBCCT-----TSCEEECTTTTCCEEEGGGTTC--CHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred             CCCCCccCC-----CCCEEEecCCcccccccccCCc--CHHHHHhhccCCCCCEECccccCcCC
Confidence            479999963     46899998 9999999999999  33222222     7999999987643

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=99.00  E-value=4.2e-11  Score=87.20  Aligned_cols=52  Identities=27%  Similarity=0.613  Sum_probs=41.5

Q ss_pred             CcceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        117 FKGKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       117 f~g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ..+.|| +|+++++      .+.||+|+.|+.|||..||+++  .... ....|+|+.|..+
T Consensus        16 ~~~~~C~~C~~~~~------~~~mi~CD~C~~wfH~~Cv~~~--~~~~-~~~~w~C~~C~~~   68 (75)
T 2k16_A           16 NQIWICPGCNKPDD------GSPMIGCDDCDDWYHWPCVGIM--AAPP-EEMQWFCPKCANK   68 (75)
T ss_dssp             CEEECBTTTTBCCS------SCCEEECSSSSSEEEHHHHTCS--SCCC-SSSCCCCTTTHHH
T ss_pred             CCCcCCCCCCCCCC------CCCEEEcCCCCcccccccCCCC--ccCC-CCCCEEChhccCc
Confidence            457899 9999973      4689999999999999999983  2222 2368999999865

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.99  E-value=1.2e-10  Score=89.07  Aligned_cols=50  Identities=32%  Similarity=0.755  Sum_probs=40.3

Q ss_pred             CcceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        117 FKGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      ...+||+|++++       .++||+|+.  |. +|||..||++.. .|    ...|+|+.|..+.
T Consensus        34 ~e~~yCiC~~~~-------~g~MI~CD~~dC~~~WfH~~CVgl~~-~p----~g~W~Cp~C~~~~   86 (91)
T 1weu_A           34 NEPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT-KP----RGKWFCPRCSQES   86 (91)
T ss_dssp             CCCBCSTTCCBC-------CSCCCCCSCSSCSCCCCCSTTTTCSS-CC----CSSCCCTTTCCCC
T ss_pred             CCCcEEECCCCC-------CCCEeEecCCCCCCCCEecccCCcCc-CC----CCCEECcCccCcC
Confidence            367999999987       368999999  76 999999999842 22    2579999998654

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.97  E-value=6.8e-11  Score=83.55  Aligned_cols=48  Identities=33%  Similarity=0.832  Sum_probs=38.4

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ..+||+|++++       .++||+|+.  |. +|||..|||++. .|.    ..|+|+.|.++
T Consensus         9 e~~~C~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvgl~~-~p~----g~w~C~~C~~~   59 (60)
T 2vnf_A            9 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT-KPR----GKWFCPRCSQE   59 (60)
T ss_dssp             CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS-CCS----SCCCCHHHHC-
T ss_pred             CCCEEECCCcC-------CCCEEEeCCCCCCCceEehhcCCCCc-CCC----CCEECcCccCc
Confidence            47999999986       368999999  66 999999999842 222    57999999765

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.3e-11  Score=87.20  Aligned_cols=50  Identities=28%  Similarity=0.685  Sum_probs=40.5

Q ss_pred             CcceeEEeCCCCCCCCCCCCccceeccccc---cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        117 FKGKYCTCARPYPDEENPNCDEMIQCALCE---DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CE---DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      -..+||+|++++       .++||||+.|+   +|||..||++.. .    ....|+|+.|..+.
T Consensus         4 ~~~~yC~C~~~~-------~g~MI~CD~cdC~~~WfH~~Cvgl~~-~----p~~~w~Cp~C~~~~   56 (70)
T 1x4i_A            4 GSSGYCICNQVS-------YGEMVGCDNQDCPIEWFHYGCVGLTE-A----PKGKWYCPQCTAAM   56 (70)
T ss_dssp             SCCCCSTTSCCC-------CSSEECCSCTTCSCCCEEHHHHTCSS-C----CSSCCCCHHHHHHH
T ss_pred             CCCeEEEcCCCC-------CCCEeEeCCCCCCccCCcccccccCc-C----CCCCEECCCCCccc
Confidence            357899999985       35999999974   999999999842 1    25789999998664

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.88  E-value=3.8e-10  Score=86.18  Aligned_cols=48  Identities=29%  Similarity=0.728  Sum_probs=38.6

Q ss_pred             CcceeEEeCCCCCCCCCCCCccceeccccc---cccccCCCCCCCCCCCCCccccccccc-ccc
Q psy16699        117 FKGKYCTCARPYPDEENPNCDEMIQCALCE---DWFHSGHLGLDSPIPDGEDYSEMSCAS-CIN  176 (231)
Q Consensus       117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CE---DWFH~~Clg~~~~~~~~~~~~~fiC~~-C~~  176 (231)
                      -..+||+|++++       .++||+|+.|+   +|||..|||+.. .|    ...|+|+. |.+
T Consensus        24 ~~~~yCiC~~~~-------~g~MI~CD~c~C~~eWfH~~CVgl~~-~p----~~~W~Cp~cC~~   75 (90)
T 2jmi_A           24 QEEVYCFCRNVS-------YGPMVACDNPACPFEWFHYGCVGLKQ-AP----KGKWYCSKDCKE   75 (90)
T ss_dssp             CCSCCSTTTCCC-------SSSEECCCSSSCSCSCEETTTSSCSS-CT----TSCCCSSHHHHH
T ss_pred             CCCcEEEeCCCC-------CCCEEEecCCCCccccCcCccCCCCc-CC----CCCccCChhhcc
Confidence            357899999986       25799999977   999999999942 22    25899999 874

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.83  E-value=2.2e-09  Score=82.45  Aligned_cols=50  Identities=24%  Similarity=0.445  Sum_probs=40.0

Q ss_pred             ceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       119 g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      .+.|+|+.+++      ++.||||+.|..|||..|++++  ....  .+.|+|+.|..+.
T Consensus        28 ~vrCiC~~~~~------~~~mi~Cd~C~~w~H~~C~~~~--~~~~--p~~w~C~~C~~~~   77 (98)
T 2lv9_A           28 VTRCICGFTHD------DGYMICCDKCSVWQHIDCMGID--RQHI--PDTYLCERCQPRN   77 (98)
T ss_dssp             BCCCTTSCCSC------SSCEEEBTTTCBEEETTTTTCC--TTSC--CSSBCCTTTSSSC
T ss_pred             CEEeECCCccC------CCcEEEcCCCCCcCcCcCCCCC--ccCC--CCCEECCCCcCCC
Confidence            67899999873      5799999999999999999983  2221  2479999998654

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=98.62  E-value=6.9e-09  Score=100.31  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=38.4

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCccccccccccccc-Ccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM-YPVLK  182 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k-~~~L~  182 (231)
                      +.+||||+.|++|||+.|||+  +...++.++.|+||.|... .+.++
T Consensus        55 ~~~mI~CD~C~~WfH~~CVgi--~~~~a~~~~~y~Cp~C~~~~gps~~  100 (528)
T 3pur_A           55 DFQWIGCDSCQTWYHFLCSGL--EQFEYYLYEKFFCPKCVPHTGHSIR  100 (528)
T ss_dssp             TTSEEECTTTCCEEEGGGTTC--CGGGTTTEEECCCTTTHHHHCSCEE
T ss_pred             CCCEEECCCCCcCCCCcCCCC--ChhHhcCCCeEECcCCcCCCCCcce
Confidence            689999999999999999999  5556778899999999865 45554

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=98.56  E-value=3.2e-08  Score=83.88  Aligned_cols=66  Identities=14%  Similarity=0.276  Sum_probs=43.2

Q ss_pred             CCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCC-CCCCCcccccccccccccC-cccccccc
Q psy16699        116 NFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSP-IPDGEDYSEMSCASCINMY-PVLKLYPH  186 (231)
Q Consensus       116 Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~-~~~~~~~~~fiC~~C~~k~-~~L~~y~~  186 (231)
                      |-+..||+|+.|.+     +...|+||..|..|||.+|+..... .-..+.+..|+|..|.... ++++|...
T Consensus         2 n~~~~yCYCG~~~~-----~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g~E~f~R~~~   69 (177)
T 3rsn_A            2 DTQAGSVDEENGRQ-----LGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQA   69 (177)
T ss_dssp             ---------CTTCC-----TTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTSSCEEEECCC
T ss_pred             CCeeeEEEcCCCCC-----CCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCCcceeEeccC
Confidence            45567999999874     4789999999999999999974211 1122468899999999865 77766543

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.14  E-value=2.8e-07  Score=71.25  Aligned_cols=40  Identities=25%  Similarity=0.666  Sum_probs=29.3

Q ss_pred             cceeccccccccccCCCCCCCC----CCCCCccccccccccccc
Q psy16699        138 EMIQCALCEDWFHSGHLGLDSP----IPDGEDYSEMSCASCINM  177 (231)
Q Consensus       138 ~MIQC~~CEDWFH~~Clg~~~~----~~~~~~~~~fiC~~C~~k  177 (231)
                      -||||+.|++|||..|++++..    .....+...+.|+.|..+
T Consensus         1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~   44 (140)
T 2ku7_A            1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER   44 (140)
T ss_dssp             CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred             CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence            3999999999999999998420    011123347999999865

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=97.72  E-value=8.8e-06  Score=54.71  Aligned_cols=39  Identities=26%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      .+.||.|+.|..|||..|++.+  .... ....++|+.|...
T Consensus        12 ~~~ll~Cd~C~~~~H~~Cl~p~--l~~~-P~g~W~C~~C~~~   50 (51)
T 1f62_A           12 DDKLILCDECNKAFHLFCLRPA--LYEV-PDGEWQCPACQPA   50 (51)
T ss_dssp             CSCCEECTTTCCEECHHHHCTT--CCSC-CSSCCSCTTTSCC
T ss_pred             CCCEEECCCCChhhCcccCCCC--cCCC-CCCcEECcCcccc
Confidence            4689999999999999999641  1111 1258999999754

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=97.63  E-value=1.8e-05  Score=61.21  Aligned_cols=44  Identities=20%  Similarity=0.527  Sum_probs=32.5

Q ss_pred             CccceeccccccccccCCCCCCC-CCCCCCcccccccccccccCc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDS-PIPDGEDYSEMSCASCINMYP  179 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~-~~~~~~~~~~fiC~~C~~k~~  179 (231)
                      +..||||..|++|||..|+++.. ...+.+..+.|.|+.|....|
T Consensus        72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~  116 (117)
T 4bbq_A           72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDS  116 (117)
T ss_dssp             GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred             CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence            57799999999999999999732 223456677899999987654

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=2.9e-05  Score=58.81  Aligned_cols=49  Identities=27%  Similarity=0.520  Sum_probs=36.7

Q ss_pred             eeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        120 KYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       120 ~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      .+| +|+++.+      ...||.|+.|..|||..|++.+  ... .....++|+.|+.+
T Consensus        17 ~~C~vC~~~~~------~~~ll~CD~C~~~~H~~Cl~Pp--l~~-~P~g~W~C~~C~~~   66 (92)
T 2e6r_A           17 YICQVCSRGDE------DDKLLFCDGCDDNYHIFCLLPP--LPE-IPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCSSSCCSGG------GGGCEECTTTCCEECSSSSSSC--CSS-CCSSCCCCHHHHHH
T ss_pred             CCCccCCCcCC------CCCEEEcCCCCchhccccCCCC--ccc-CCCCCcCCccCcCc
Confidence            456 8998762      4799999999999999999841  111 12358999999865

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=97.28  E-value=0.00012  Score=52.84  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=29.8

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      .+.||.|+.|..|||..||+.  +.....+-..++|+.|..+
T Consensus        30 ~~~ll~CD~C~~~yH~~Cl~P--pl~~~P~g~~W~C~~C~~~   69 (70)
T 3asl_A           30 PDKQLMCDECDMAFHIYCLDP--PLSSVPSEDEWYCPECRND   69 (70)
T ss_dssp             GGGEEECTTTCCEEEGGGSSS--CCSSCCSSSCCCCTTTSCC
T ss_pred             CCCEEEcCCCCCceecccCCC--CcCCCCCCCCcCCcCccCc
Confidence            589999999999999999983  1111112238999999754

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=97.02  E-value=0.00019  Score=53.91  Aligned_cols=55  Identities=22%  Similarity=0.537  Sum_probs=39.7

Q ss_pred             ceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc--Ccccc
Q psy16699        119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM--YPVLK  182 (231)
Q Consensus       119 g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k--~~~L~  182 (231)
                      ....+|+++..+  +  .+.||.|+.|..|||..|++++ ..|+    ..++|+.|..+  ..+|.
T Consensus        26 ~~C~vC~~~~s~--~--~~~ll~CD~C~~~fH~~Cl~p~-~vP~----g~W~C~~C~~~~~~~~~~   82 (88)
T 2l43_A           26 AVCSICMDGESQ--N--SNVILFCDMCNLAVHQECYGVP-YIPE----GQWLCRHCLQSRARPALE   82 (88)
T ss_dssp             CCCSSCCSSSSC--S--EEEEEECSSSCCCCCHHHHTCS-SCCS----SCCCCHHHHHHTTSCC--
T ss_pred             CcCCcCCCCCCC--C--CCCEEECCCCCchhhcccCCCC-ccCC----CceECccccCccchhhhh
Confidence            456689987521  1  5799999999999999999974 2333    58999999865  34443

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.01  E-value=0.00035  Score=47.87  Aligned_cols=37  Identities=16%  Similarity=0.449  Sum_probs=28.1

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN  176 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~  176 (231)
                      +.||.|+.|..|||..|++.+  ... .....++|+.|++
T Consensus        19 g~ll~Cd~C~~~~H~~Cl~pp--l~~-~p~g~W~C~~C~~   55 (56)
T 2yql_A           19 GQLLMCDTCSRVYHLDCLDPP--LKT-IPKGMWICPRCQD   55 (56)
T ss_dssp             SCCEECSSSSCEECSSSSSSC--CCS-CCCSSCCCHHHHC
T ss_pred             CeEEEcCCCCcceECccCCCC--cCC-CCCCceEChhhhC
Confidence            479999999999999999841  111 1235799999975

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=96.95  E-value=0.0002  Score=50.31  Aligned_cols=51  Identities=20%  Similarity=0.453  Sum_probs=36.3

Q ss_pred             EEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCC--CcccccccccccccC
Q psy16699        122 CTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDG--EDYSEMSCASCINMY  178 (231)
Q Consensus       122 C~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~--~~~~~fiC~~C~~k~  178 (231)
                      .+|++++..    ..+.||.|+.|..|||..|++.+  ....  ..-..++|+.|..+.
T Consensus        10 ~vC~~~~~~----~~~~ll~Cd~C~~~~H~~C~~p~--l~~~~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A           10 TICQEEYSE----APNEMVICDKCGQGYHQLCHTPH--IDSSVIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             SSSCCCCCB----TTBCEEECSSSCCEEETTTSSSC--CCHHHHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCC----CCCCEEECCCCChHHHhhhCCCc--ccccccCCCCCEECCCCcCcc
Confidence            378877521    15899999999999999999862  2110  123579999998653

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=96.89  E-value=0.00044  Score=48.97  Aligned_cols=38  Identities=26%  Similarity=0.520  Sum_probs=29.1

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||.|+.|..|||..|++.+  .... ....++|+.|..+
T Consensus        18 g~ll~CD~C~~~fH~~Cl~pp--l~~~-P~g~W~C~~C~~~   55 (66)
T 1xwh_A           18 GELICCDGCPRAFHLACLSPP--LREI-PSGTWRCSSCLQA   55 (66)
T ss_dssp             SSCEECSSCCCEECTTTSSSC--CSSC-CSSCCCCHHHHHT
T ss_pred             CCEEEcCCCChhhcccccCCC--cCcC-CCCCeECccccCc
Confidence            579999999999999999841  1111 1258999999865

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.88  E-value=0.00072  Score=49.68  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN  176 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~  176 (231)
                      .+.||.|+.|..+||..|++.  +.....+-..++|+.|..
T Consensus        38 ~~~ll~CD~C~~~yH~~Cl~P--pl~~~P~g~~W~C~~C~~   76 (77)
T 2e6s_A           38 PNMQLLCDECNVAYHIYCLNP--PLDKVPEEEYWYCPSCKT   76 (77)
T ss_dssp             STTEEECSSSCCEEETTSSSS--CCSSCCCSSCCCCTTTCC
T ss_pred             CCCEEEcCCCCccccccccCC--CccCCCCCCCcCCcCccC
Confidence            579999999999999999983  121111223799999974

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=96.87  E-value=0.00032  Score=48.65  Aligned_cols=38  Identities=16%  Similarity=0.428  Sum_probs=28.9

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||.|+.|..|||..|++.+  ... .....++|+.|..+
T Consensus        15 g~ll~Cd~C~~~fH~~Cl~pp--l~~-~p~g~W~C~~C~~~   52 (60)
T 2puy_A           15 GQLLMCDTCSRVYHLDCLDPP--LKT-IPKGMWICPRCQDQ   52 (60)
T ss_dssp             SSCEECSSSSCEECGGGSSSC--CSS-CCCSCCCCHHHHHH
T ss_pred             CcEEEcCCCCcCEECCcCCCC--cCC-CCCCceEChhccCh
Confidence            589999999999999999841  111 12258999999754

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=96.86  E-value=0.00018  Score=52.15  Aligned_cols=50  Identities=20%  Similarity=0.517  Sum_probs=37.5

Q ss_pred             ceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       119 g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ..-.+|+++..+  +  .+.||.|+.|..|||..|++++ ..|+    ..++|+.|..+
T Consensus        17 ~~C~vC~~~~s~--~--~~~ll~CD~C~~~~H~~Cl~~~-~vP~----g~W~C~~C~~~   66 (71)
T 2ku3_A           17 AVCSICMDGESQ--N--SNVILFCDMCNLAVHQECYGVP-YIPE----GQWLCRHCLQS   66 (71)
T ss_dssp             CSCSSSCCCCCC--S--SSCEEECSSSCCEEEHHHHTCS-SCCS----SCCCCHHHHHH
T ss_pred             CCCCCCCCCCCC--C--CCCEEECCCCCCccccccCCCC-cCCC----CCcCCccCcCc
Confidence            345678877421  1  5799999999999999999974 2333    57999999754

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=96.67  E-value=0.00047  Score=48.24  Aligned_cols=47  Identities=28%  Similarity=0.627  Sum_probs=34.6

Q ss_pred             ceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        119 GKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       119 g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ..+| +|+++         +.||.|+.|..|||..|++.+  ... .....++|+.|..+
T Consensus        11 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~--l~~-~p~g~W~C~~C~~~   58 (61)
T 2l5u_A           11 QDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPD--MEK-APEGKWSCPHCEKE   58 (61)
T ss_dssp             CSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTT--CCS-CCCSSCCCTTGGGG
T ss_pred             CCCCccCCCC---------CcEEECCCCChhhhhhccCCC--CCC-CCCCceECcccccc
Confidence            3566 48753         589999999999999999863  211 12358999999764

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=96.65  E-value=0.00094  Score=49.14  Aligned_cols=39  Identities=28%  Similarity=0.502  Sum_probs=28.3

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN  176 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~  176 (231)
                      .+.||.|+.|..+||..|++.  .......-+.++|+.|+.
T Consensus        38 ~~~ll~CD~C~~~yH~~Cl~P--pL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           38 PDKQLMCDECDMAFHIYCLDP--PLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             GGGEEECTTTCCEEETTTSSS--CCSSCCSSSCCCCTTTC-
T ss_pred             CcceeEeCCCCCccCcccCCC--cccCCCCCCceECcCccc
Confidence            478999999999999999984  121222223499999974

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=96.65  E-value=0.0013  Score=45.96  Aligned_cols=38  Identities=24%  Similarity=0.516  Sum_probs=29.2

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||.|+.|..+||..|++.+  .... ....++|+.|+.+
T Consensus        19 g~ll~Cd~C~~~fH~~Cl~pp--l~~~-p~g~W~C~~C~~~   56 (61)
T 1mm2_A           19 GELLCCDTCPSSYHIHCLNPP--LPEI-PNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCBCCSSSCCCBCSSSSSSC--CSSC-CSSCCCCTTTTTT
T ss_pred             CCEEEcCCCCHHHcccccCCC--cCcC-CCCccCChhhcCc
Confidence            579999999999999999842  1111 2358999999865

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=96.26  E-value=0.0018  Score=49.66  Aligned_cols=46  Identities=17%  Similarity=0.369  Sum_probs=33.0

Q ss_pred             EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        123 TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       123 ~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +|+++.+      +..||+|+.|..|||..|++.+  .... .-..|+|+.|...
T Consensus        59 ~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~pp--l~~~-P~g~W~C~~C~~c  104 (111)
T 2ysm_A           59 NCKQSGE------DSKMLVCDTCDKGYHTFCLQPV--MKSV-PTNGWKCKNCRIC  104 (111)
T ss_dssp             TTCCCSC------CTTEEECSSSCCEEEGGGSSSC--CSSC-CSSCCCCHHHHCC
T ss_pred             ccCccCC------CCCeeECCCCCcHHhHHhcCCc--cccC-CCCCcCCcCCcCc
Confidence            4776642      3689999999999999999741  1111 1257999999754

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A

Probab=96.24  E-value=0.0017  Score=47.70  Aligned_cols=47  Identities=26%  Similarity=0.646  Sum_probs=35.7

Q ss_pred             ccceeecccCCCCCCCCceeeccccch-hcCCccccccccc--c-cCCCCCCC
Q psy16699         45 RQALYACLTCTPDICDPAGFCLACNYH-CHEGHNIVELYTK--R-CDCGNSKF   93 (231)
Q Consensus        45 rQ~~y~C~TC~~~~~~~~gvC~~Cs~~-CH~gH~lvel~~k--R-CDCG~~~~   93 (231)
                      -..+|.|+||..+.  .-.||..|-.. =|.+|++.-....  . ||||+...
T Consensus        14 ge~~Y~C~~C~~d~--tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~ea   64 (75)
T 3ny3_A           14 GEPTYSCRDCAVDP--TCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEA   64 (75)
T ss_dssp             TCEEEEETTTBSST--TCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTT
T ss_pred             CCEEEECccCCCCC--CeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHH
Confidence            35699999998743  56899999866 7999997644332  2 99999754

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=95.99  E-value=0.0024  Score=49.61  Aligned_cols=39  Identities=21%  Similarity=0.472  Sum_probs=29.2

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ++.||.|+.|..|||..|++.+  ... .....++|+.|...
T Consensus        70 ~~~ll~Cd~C~~~yH~~Cl~pp--l~~-~P~g~W~C~~C~~~  108 (114)
T 2kwj_A           70 DDQLLFCDDCDRGYHMYCLNPP--VAE-PPEGSWSCHLCWEL  108 (114)
T ss_dssp             TTTEEECSSSCCEEETTTSSSC--CSS-CCSSCCCCHHHHHH
T ss_pred             CCceEEcCCCCccccccccCCC--ccC-CCCCCeECccccch
Confidence            4789999999999999999841  111 12247999999754

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A

Probab=95.91  E-value=0.0044  Score=46.27  Aligned_cols=55  Identities=27%  Similarity=0.637  Sum_probs=38.9

Q ss_pred             CCccccCcccccceeecccCCCCCCCCceeeccccch-hcCCcccccccccc-----cCCCCCCC
Q psy16699         35 NCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYH-CHEGHNIVELYTKR-----CDCGNSKF   93 (231)
Q Consensus        35 ~CTy~~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~~-CH~gH~lvel~~kR-----CDCG~~~~   93 (231)
                      .|...  +-+-..+|.|+||..+.  .-.||..|-.. =|.+|++.-....|     ||||+...
T Consensus        10 ~Cg~v--f~~ge~~Y~C~~C~~d~--tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~ea   70 (82)
T 3nis_A           10 NCGRK--FKIGEPLYRCHECGCDD--TCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEA   70 (82)
T ss_dssp             CCCCB--CCTTCEEEEETTTBSST--TCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGG
T ss_pred             CCCCc--ccCCCEEEEeeccCCCC--CceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHH
Confidence            46544  22235699999998753  56799999855 69999976544322     99998753

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.83  E-value=0.0027  Score=45.30  Aligned_cols=37  Identities=22%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             ccceeccccccccccCCCCCC-CCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLD-SPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~-~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||.|+.|..|||..|++.+ ...|    -..++|+.|...
T Consensus        22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P----~g~W~C~~C~~~   59 (66)
T 2lri_C           22 TDVLRCTHCAAAFHWRCHFPAGTSRP----GTGLRCRSCSGD   59 (66)
T ss_dssp             TTCEECSSSCCEECHHHHCTTTCCCC----SSSCCCTTTTTC
T ss_pred             CeEEECCCCCCceecccCCCccCcCC----CCCEECccccCC
Confidence            569999999999999999641 1222    246999999754

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=95.80  E-value=0.004  Score=48.48  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             ceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699        119 GKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI  175 (231)
Q Consensus       119 g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~  175 (231)
                      ..||.+-+.        .+.||.|+  .|..|||..||++. ..|.    ..++|+.|.
T Consensus        15 ~~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~-~~P~----g~W~Cp~c~   60 (107)
T 4gne_A           15 EDYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLT-QPPY----GKWECPWHQ   60 (107)
T ss_dssp             CSSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCS-SCCS----SCCCCGGGB
T ss_pred             CCCCCcCCC--------CCcEeEECCCCCCcccccccCcCC-cCCC----CCEECCCCC
Confidence            356765442        36899999  89999999999973 2333    468888764

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=95.77  E-value=0.0058  Score=53.39  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      .+.|+.|+.|..+||..|++.  +......-..++|+.|...
T Consensus       186 ~~~lL~CD~C~~~yH~~CL~P--PL~~vP~G~~W~Cp~C~~~  225 (226)
T 3ask_A          186 PDKQLMCDECDMAFHIYCLDP--PLSSVPSEDEWYCPECRND  225 (226)
T ss_dssp             --CCEECSSSCCEECSCC--C--CCCSCCSSSCCCCGGGC--
T ss_pred             CCCeEEcCCCCcceeCccCCC--CcccCCCCCCCCCcCCcCc
Confidence            479999999999999999984  2222122237999999753

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=95.59  E-value=0.0078  Score=46.43  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=28.7

Q ss_pred             CccceeccccccccccCCCCCC-CCCCCCCccccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLD-SPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~-~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ++.||.|+.|..+||..|+..+ ...|    -..++|+.|..+
T Consensus        74 ~~~ll~Cd~C~~~yH~~Cl~p~l~~~P----~~~W~C~~C~~k  112 (112)
T 3v43_A           74 ADNMLFCDSCDRGFHMECCDPPLTRMP----KGMWICQICRPR  112 (112)
T ss_dssp             TCCCEECTTTCCEECGGGCSSCCSSCC----SSCCCCTTTSCC
T ss_pred             ccceEEcCCCCCeeecccCCCCCCCCC----CCCeECCCCCCc
Confidence            4689999999999999999531 1122    237999999754

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=95.14  E-value=0.0082  Score=44.79  Aligned_cols=53  Identities=15%  Similarity=0.420  Sum_probs=37.3

Q ss_pred             eeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCC---CCcccccccccccccC
Q psy16699        120 KYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPD---GEDYSEMSCASCINMY  178 (231)
Q Consensus       120 ~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~---~~~~~~fiC~~C~~k~  178 (231)
                      .--+|++....+    .+.||.|+.|...||..|++.  ....   ...-..++|+.|+.+.
T Consensus        18 ~C~vC~~~~~~~----~~~ll~CD~C~~~yH~~Cl~P--pl~~~~~~~p~g~W~C~~C~~~~   73 (88)
T 1wev_A           18 ACVVCRQMTVAS----GNQLVECQECHNLYHQDCHKP--QVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             SCSSSCCCCCCT----TCCEEECSSSCCEEETTTSSS--CCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             cCCCCCCCCCCC----CCceEECCCCCCeEcCccCCC--cccccccCCCCCCeeCccccchh
Confidence            344688775311    468999999999999999985  2221   1234689999998654

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=94.26  E-value=0.029  Score=46.28  Aligned_cols=39  Identities=21%  Similarity=0.420  Sum_probs=29.2

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      +.||.|+.|..|||..|++.+  ... ..-..++|+.|..+.
T Consensus        14 g~ll~Cd~C~~~~H~~C~~p~--l~~-~p~~~W~C~~C~~~~   52 (184)
T 3o36_A           14 GELLCCEKCPKVFHLSCHVPT--LTN-FPSGEWICTFCRDLS   52 (184)
T ss_dssp             SSCEECSSSSCEECTTTSSSC--CSS-CCSSCCCCTTTSCSS
T ss_pred             CeeeecCCCCcccCccccCCC--CCC-CCCCCEECccccCcc
Confidence            569999999999999999641  111 123479999998764

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=94.21  E-value=0.024  Score=47.78  Aligned_cols=39  Identities=15%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      +.||.|+.|..|||..|++.+  ... ..-..++|+.|....
T Consensus        17 g~ll~Cd~C~~~~H~~Cl~p~--l~~-~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A           17 GDLLCCEKCPKVFHLTCHVPT--LLS-FPSGDWICTFCRDIG   55 (207)
T ss_dssp             EEEEECSSSSCEECTTTSSSC--CSS-CCSSCCCCTTTSCSS
T ss_pred             CceEEcCCCCCccCCccCCCC--CCC-CCCCCEEeCceeCcc
Confidence            569999999999999999641  111 123469999998764

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=91.77  E-value=0.13  Score=39.17  Aligned_cols=36  Identities=17%  Similarity=0.467  Sum_probs=26.2

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI  175 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~  175 (231)
                      ..||.|..|...||..||++.  ... .....+.|+.|.
T Consensus        20 ~~ll~C~~C~~~~H~~Cl~~~--~~~-~~~~~W~C~~C~   55 (111)
T 2ysm_A           20 LDQFFCTTCGQHYHGMCLDIA--VTP-LKRAGWQCPECK   55 (111)
T ss_dssp             TTSEECSSSCCEECTTTTTCC--CCT-TTSTTCCCTTTC
T ss_pred             cCCeECCCCCCCcChHHhCCc--ccc-ccccCccCCcCC
Confidence            578999999999999999873  211 123567777664

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=90.52  E-value=0.23  Score=37.29  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=28.1

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||.|+.|..-||..|+..  +... -.-..++|+.|...
T Consensus        35 g~LL~CD~C~~~fH~~Cl~P--pL~~-~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           35 GDLVMCNQCEFCFHLDCHLP--ALQD-VPGEEWSCSLCHVL   72 (88)
T ss_dssp             SCCEECTTSSCEECTTSSST--TCCC-CCSSSCCCCSCCCC
T ss_pred             CCEEECCCCCCceecccCCC--CCCC-CcCCCcCCccccCC
Confidence            46999999999999999943  1111 12257999999865

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=89.18  E-value=0.018  Score=44.42  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=26.7

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI  175 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~  175 (231)
                      .+.||.|..|...||..||++.+.......-..+.|+.|.
T Consensus        23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A           23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence            4689999999999999999872111111123356666663

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=87.84  E-value=0.33  Score=40.54  Aligned_cols=37  Identities=27%  Similarity=0.535  Sum_probs=28.2

Q ss_pred             ccceeccccccccccCCCCCC-CCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLD-SPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~-~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.|+.|+.|...||..|+..+ ...|    -..++|+.|..+
T Consensus        12 g~ll~Cd~C~~~~H~~Cl~p~l~~~p----~g~W~C~~C~~~   49 (189)
T 2ro1_A           12 GDLVMCNQCEFCFHLDCHLPALQDVP----GEEWSCSLCHVL   49 (189)
T ss_dssp             SSCCCCTTTCCBCCSTTSTTCCSSCC----CTTCCTTTTSCS
T ss_pred             CceeECCCCCchhccccCCCCcccCC----CCCCCCcCccCC
Confidence            568999999999999999531 1122    357999999866

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=84.98  E-value=0.099  Score=40.32  Aligned_cols=39  Identities=21%  Similarity=0.433  Sum_probs=25.9

Q ss_pred             CccceeccccccccccCCCCCCCCCCCCCcccccccccc
Q psy16699        136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASC  174 (231)
Q Consensus       136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C  174 (231)
                      .+.||.|..|...||..||++.........-..+.|+.|
T Consensus        20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C   58 (114)
T 2kwj_A           20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC   58 (114)
T ss_dssp             CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred             CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence            479999999999999999987311000112235666666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1wepa_	79	g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus	1e-04

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASC 174
           YC C +PY          MI+C LC+DWFH   +G+     +  D     C  C
Sbjct: 14  YCLCRQPYNV-----NHFMIECGLCQDWFHGSCVGI--EEENAVDIDIYHCPDC 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	99.33
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	99.07
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	99.04
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.93
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.92
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	98.91
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.71
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.26
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	98.21
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.21
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	97.27

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.8e-14  Score=102.65  Aligned_cols=59  Identities=31%  Similarity=0.789  Sum_probs=46.7

Q ss_pred             cCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        113 YNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       113 Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      -+..-..+||+|+++|+ +    +++||||+.|++|||..|+++  ...+....+.|+|+.|..+.
T Consensus         6 s~~~~~pv~CiC~~~~~-~----~~~mI~Cd~C~~W~H~~C~g~--~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_           6 SGMALVPVYCLCRQPYN-V----NHFMIECGLCQDWFHGSCVGI--EEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCCCCCSTTSCSCC-S----SSCEEEBTTTCCEEEHHHHTC--CHHHHTTCSBBCCTTTTTTS
T ss_pred             CCCCcCCeEeECCCccC-C----CCcEEECCCCCCcEeccccCc--chhcCCCCCEEECccCcCCc
Confidence            34445679999999984 3    578999999999999999998  33334456689999998763

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=99.07  E-value=8e-12  Score=84.12  Aligned_cols=48  Identities=31%  Similarity=0.704  Sum_probs=37.8

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccc---cccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCAL---CEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~---CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +++||+|+++++       +.||+|+.   |.+|||..|||++. .|    .+.|+|+.|.++
T Consensus         1 e~~yC~C~~~~~-------~~mi~Cd~~~C~~~WfH~~Cvgl~~-~p----~~~w~C~~C~~k   51 (51)
T d2pnxa1           1 EPTYCLCHQVSY-------GEMIGCDNPDCSIEWFHFACVGLTT-KP----RGKWFCPRCSQE   51 (51)
T ss_dssp             CCEETTTTEECC-------SEEEECSCTTCSSCEEEGGGGTCSS-CC----SSCCCCHHHHCC
T ss_pred             CCcEEEcCCCCC-------CCEEEEecCCCCCCCEeCCccCCCc-CC----CCcEECcCCCCc
Confidence            368999999873       46999986   58999999999842 22    247999999864

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.04  E-value=4.4e-11  Score=84.80  Aligned_cols=55  Identities=24%  Similarity=0.564  Sum_probs=42.4

Q ss_pred             CCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        116 NFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       116 Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      |...++|+|++++++     ...||||+.|+.|||..|++++.. +  .....|+|+.|..+.
T Consensus        13 ~~~~~~C~C~~~~~~-----~~~mv~Cd~C~~w~H~~C~g~~~~-~--~~~~~~~C~~C~~~~   67 (72)
T d1weea_          13 DNWKVDCKCGTKDDD-----GERMLACDGCGVWHHTRCIGINNA-D--ALPSKFLCFRCIELS   67 (72)
T ss_dssp             CSSEECCTTCCCSCC-----SSCEEECSSSCEEEETTTTTCCTT-S--CCCSCCCCHHHHHHC
T ss_pred             CCCeEEeeCCCCcCC-----CCeEEEeCCCCCcCchhhcCCccc-c--CCCCcEECcCCcCcC
Confidence            344689999998842     568999999999999999998421 1  223579999998663

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.93  E-value=1.8e-10  Score=79.85  Aligned_cols=51  Identities=31%  Similarity=0.722  Sum_probs=40.4

Q ss_pred             eE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699        121 YC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY  178 (231)
Q Consensus       121 YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~  178 (231)
                      .| +|++++++     +..||||+.|..|||..|+++  ........+.|+|+.|..+.
T Consensus         8 ~C~~C~~~~~~-----~~~~I~Cd~C~~w~H~~C~~~--~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           8 QCGACGESYAA-----DEFWICCDLCEMWFHGKCVKI--TPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             CCSSSCCCCCS-----SSCEEECSSSCCEEETTTTTC--CTTGGGGCSSCCCHHHHTTT
T ss_pred             cCcCcCCCCCC-----CCCEEEcCCCCccCCcccCCc--ChHHCCCCCeEECcCCcCcC
Confidence            44 79998842     468999999999999999998  33334456789999998763

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.7e-11  Score=87.44  Aligned_cols=54  Identities=28%  Similarity=0.729  Sum_probs=40.0

Q ss_pred             cceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCC--CCccccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPD--GEDYSEMSCASCINM  177 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~--~~~~~~fiC~~C~~k  177 (231)
                      ..+||+|+++++      ++.||||+.|+.|||..|+|++...+.  ....+.|+|+.|...
T Consensus        15 ~~~~CiC~~~~~------~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          15 NALYCICRQPHN------NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TCCCSTTCCCCC------SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CcCEEECCCccC------CCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            368999999984      468999999999999999998321110  112346999999643

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.91  E-value=1.7e-10  Score=83.24  Aligned_cols=53  Identities=26%  Similarity=0.495  Sum_probs=40.2

Q ss_pred             ceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCC--CCCccccccccccccc
Q psy16699        119 GKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIP--DGEDYSEMSCASCINM  177 (231)
Q Consensus       119 g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~--~~~~~~~fiC~~C~~k  177 (231)
                      .+||+|+.+++      ++.||+|+  .|+.|||..|||+.....  .....+.|+|+.|...
T Consensus        16 ~~~C~C~~~~~------~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~   72 (78)
T d1wewa_          16 KVRCVCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT   72 (78)
T ss_dssp             CCCCSSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred             ccEeECCCccC------CCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCc
Confidence            58999999873      46788887  899999999999843221  2334568999999754

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.8e-09  Score=77.06  Aligned_cols=50  Identities=22%  Similarity=0.438  Sum_probs=36.1

Q ss_pred             cceeEEeCCCCCCCCCCCCccceecccc-ccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        118 KGKYCTCARPYPDEENPNCDEMIQCALC-EDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~C-EDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      ..+||+|+++++ .    +..|++|+.| .+|||..||++. ..|    -+.|+|+.|...
T Consensus        15 e~~~CiC~~~~~-~----~~i~c~~~~C~~~wfH~~Cvgl~-~~p----~~~w~C~~C~~~   65 (71)
T d1wesa_          15 EPTYCLCNQVSY-G----EMIGCDNEQCPIEWFHFSCVSLT-YKP----KGKWYCPKCRGD   65 (71)
T ss_dssp             SCCCSTTCCCCC-S----SEECCSCTTCSCCCEETTTTTCS-SCC----SSCCCCTTTSSC
T ss_pred             CCCEEEeCCCCC-C----CEEEEECCCCCCcCccCccCCCC-cCC----CCcEECcCCccc
Confidence            348999999873 1    3455566778 589999999984 222    247999999754

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=4e-08  Score=71.46  Aligned_cols=55  Identities=16%  Similarity=0.438  Sum_probs=38.1

Q ss_pred             ceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCC-CCccccccccccccc
Q psy16699        119 GKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPD-GEDYSEMSCASCINM  177 (231)
Q Consensus       119 g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~-~~~~~~fiC~~C~~k  177 (231)
                      +++| +|+++..+.    ...||+|+.|..|||..|++.+..... .+.-..|+|+.|..+
T Consensus        16 ~~~C~iC~~~~~~~----~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~   72 (88)
T d1weva_          16 GLACVVCRQMTVAS----GNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             CCSCSSSCCCCCCT----TCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred             cCCccCCCCccCCC----CCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCch
Confidence            4555 999876321    478999999999999999986211111 112337999999865

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.5e-07  Score=63.27  Aligned_cols=38  Identities=24%  Similarity=0.516  Sum_probs=29.2

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||+|+.|..|||..||+..  .... .-+.|+|+.|..+
T Consensus        19 g~lv~Cd~C~~~~H~~C~~~~--~~~~-~~~~W~C~~C~~~   56 (61)
T d1mm2a_          19 GELLCCDTCPSSYHIHCLNPP--LPEI-PNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCBCCSSSCCCBCSSSSSSC--CSSC-CSSCCCCTTTTTT
T ss_pred             CeEEEeCCCCccCchhhcCCC--cCcC-CCCcEECCCCcCc
Confidence            579999999999999999862  2111 2257999999755

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-07  Score=62.14  Aligned_cols=45  Identities=24%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699        123 TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN  176 (231)
Q Consensus       123 ~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~  176 (231)
                      +|+++.+      .+.||+|+.|+.|||..|++.+  ..+. .-+.|+|+.|..
T Consensus         5 vC~~~~~------~~~~i~Cd~C~~~~H~~C~~p~--~~~~-p~~~W~C~~C~~   49 (51)
T d1f62a_           5 VCRKKGE------DDKLILCDECNKAFHLFCLRPA--LYEV-PDGEWQCPACQP   49 (51)
T ss_dssp             TTCCSSC------CSCCEECTTTCCEECHHHHCTT--CCSC-CSSCCSCTTTSC
T ss_pred             CcCCCCC------CCCEEEcCCCCCCCCCCCCCCC--CCcC-CCCCEECcCCcC
Confidence            5776642      4689999999999999999863  2222 225799999965

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=9.3e-05  Score=51.35  Aligned_cols=38  Identities=26%  Similarity=0.473  Sum_probs=28.5

Q ss_pred             ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699        137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM  177 (231)
Q Consensus       137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k  177 (231)
                      +.||.|+.|..|||..|++.+  ... .....|+|+.|...
T Consensus        17 ~~ll~Cd~C~~~~H~~C~~p~--l~~-~p~~~W~C~~C~~~   54 (70)
T d1fp0a1          17 GDLVMCNQCEFCFHLDCHLPA--LQD-VPGEEWSCSLCHVL   54 (70)
T ss_dssp             SCCEECTTSSCEECTTSSSTT--CCC-CCSSSCCCCSCCCC
T ss_pred             CEEEECCCCChhhccccCCCC--cCc-CCCCCEECcCCcCc
Confidence            469999999999999999852  111 12346999999654