Psyllid ID: psy16701

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MSSKRKNLKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
cccccEEEEEccccEEEccccccHHHHHcccccccccEEEEEEEEEEcccccHHHHHHHccccEEccccccEEEEEEccccEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccccccHHHHHHHccccccccccccEEEEEEccccEEEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccHHHHHHHcccccccccccccEEEEEEccccEEEEEEEcccc
cccccccHHcccccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHcccEEccccccccEEEEEEccEEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccHHHHHHHcccEEEcccccccEEEEEccccEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEccccEcHHHHHHHccccEEccccccccEEEEEccccEEEEEccccEE
msskrknlkygigsacigggqACFCLirggqknrrgtnlnmvgtisvgcpldlnqinsrvryseynpgkfhGLIMKIlnprttclafqsgklLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMvgtisvgcpldlnqinsrvryseynpgkfhGLIMKIlnprttclafqsgklLILGAKHEHDCKLASRKFAKILKQLghpikyqgfkihnivctcdvrfpvklDALHhvhsqfssyepelfpgliyrmvkPRVVLLIFVNGRI
msskrknlKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
MSSKRKNLKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
*******LKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN***
***KRKN*KYGIGSACI******************GTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
********KYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
*****************************GQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
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MSSKRKNLKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q27896224 TBP-related factor OS=Dro yes N/A 0.529 0.642 0.582 1e-48
Q92146302 TATA-box-binding protein N/A N/A 0.529 0.476 0.554 1e-46
Q92117300 TATA-box-binding protein N/A N/A 0.529 0.48 0.554 1e-46
P29037316 TATA-box-binding protein yes N/A 0.529 0.455 0.554 2e-46
P53360318 TATA-box-binding protein N/A N/A 0.529 0.452 0.554 2e-46
P13393240 TATA-box-binding protein yes N/A 0.529 0.6 0.554 2e-46
Q7SXL3302 TATA-box-binding protein yes N/A 0.529 0.476 0.554 2e-46
O13270302 TATA-box-binding protein yes N/A 0.529 0.476 0.554 2e-46
Q4R4F5326 TATA-box-binding protein N/A N/A 0.529 0.441 0.554 2e-46
P20226339 TATA-box-binding protein yes N/A 0.529 0.424 0.554 2e-46
>sp|Q27896|TRF_DROME TBP-related factor OS=Drosophila melanogaster GN=Trf PE=2 SV=1 Back     alignment and function desciption
 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 117/146 (80%)

Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
            +N+V T SV C LDL  INSR R SEY+P +F G+IM++ +PR T L F++GK++  GA
Sbjct: 51  LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110

Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
           ++E +  + SRKFA+IL++LG P+K+  +K+ NIV T D+RFP++L+ L+HVH QFSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYE 170

Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
           PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
May be essential for embryonic development.
Drosophila melanogaster (taxid: 7227)
>sp|Q92146|TBP_TRIGA TATA-box-binding protein OS=Trimeresurus gramineus GN=TBP PE=3 SV=1 Back     alignment and function description
>sp|Q92117|TBP_PROFL TATA-box-binding protein OS=Protobothrops flavoviridis GN=TBP PE=3 SV=1 Back     alignment and function description
>sp|P29037|TBP_MOUSE TATA-box-binding protein OS=Mus musculus GN=Tbp PE=1 SV=1 Back     alignment and function description
>sp|P53360|TBP_MESAU TATA-box-binding protein OS=Mesocricetus auratus GN=TBP PE=2 SV=1 Back     alignment and function description
>sp|P13393|TBP_YEAST TATA-box-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT15 PE=1 SV=3 Back     alignment and function description
>sp|Q7SXL3|TBP_DANRE TATA-box-binding protein OS=Danio rerio GN=tbp PE=1 SV=1 Back     alignment and function description
>sp|O13270|TBP_CHICK TATA-box-binding protein OS=Gallus gallus GN=TBP PE=2 SV=1 Back     alignment and function description
>sp|Q4R4F5|TBP_MACFA TATA-box-binding protein OS=Macaca fascicularis GN=TBP PE=2 SV=1 Back     alignment and function description
>sp|P20226|TBP_HUMAN TATA-box-binding protein OS=Homo sapiens GN=TBP PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
170031575236 TATA-box-binding protein [Culex quinquef 0.518 0.597 0.627 7e-50
383860592241 PREDICTED: TATA-box-binding protein-like 0.544 0.614 0.611 1e-49
345492218238 PREDICTED: TATA-box-binding protein-like 0.562 0.642 0.593 5e-49
157126257234 TATA binding protein, putative [Aedes ae 0.525 0.611 0.606 5e-48
66498987241 PREDICTED: TATA-box-binding protein-like 0.551 0.622 0.592 1e-47
380013265241 PREDICTED: TATA-box-binding protein-like 0.551 0.622 0.592 1e-47
350425498241 PREDICTED: TATA-box-binding protein-like 0.544 0.614 0.598 1e-47
340728982241 PREDICTED: TATA-box-binding protein-like 0.544 0.614 0.598 1e-47
194863019224 GG10512 [Drosophila erecta] gi|190662103 0.529 0.642 0.582 7e-47
17136834224 TBP-related factor [Drosophila melanogas 0.529 0.642 0.582 8e-47
>gi|170031575|ref|XP_001843660.1| TATA-box-binding protein [Culex quinquefasciatus] gi|167870488|gb|EDS33871.1| TATA-box-binding protein [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 119/145 (82%)

Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
           RN V T+S+GC L+L  IN R R SEYNP +FHG++M+I +PR T L F+SGK++  GAK
Sbjct: 64  RNCVATVSLGCELNLQSINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKIVCTGAK 123

Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
           +EHD  LA+RKFA+I++++G+ +K+  FK+ N+V T D+RFPV+L+ L+ VH QFSSYEP
Sbjct: 124 NEHDANLAARKFARIIQKVGYNVKFLEFKVQNLVATVDLRFPVRLENLNQVHGQFSSYEP 183

Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
           ELFPGLIYRMVKPRVVLLIFVNG+I
Sbjct: 184 ELFPGLIYRMVKPRVVLLIFVNGKI 208

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383860592|ref|XP_003705773.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345492218|ref|XP_001603648.2| PREDICTED: TATA-box-binding protein-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157126257|ref|XP_001654561.1| TATA binding protein, putative [Aedes aegypti] gi|108882533|gb|EAT46758.1| AAEL002079-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|66498987|ref|XP_394229.2| PREDICTED: TATA-box-binding protein-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380013265|ref|XP_003690685.1| PREDICTED: TATA-box-binding protein-like [Apis florea] Back     alignment and taxonomy information
>gi|350425498|ref|XP_003494140.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340728982|ref|XP_003402790.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|194863019|ref|XP_001970236.1| GG10512 [Drosophila erecta] gi|190662103|gb|EDV59295.1| GG10512 [Drosophila erecta] Back     alignment and taxonomy information
>gi|17136834|ref|NP_476939.1| TBP-related factor [Drosophila melanogaster] gi|25091428|sp|Q27896.1|TRF_DROME RecName: Full=TBP-related factor gi|11136|emb|CAA50185.1| TBP-related factor [Drosophila melanogaster] gi|11138|emb|CAA50186.1| TBP-related factor [Drosophila melanogaster] gi|7297339|gb|AAF52600.1| TBP-related factor [Drosophila melanogaster] gi|21711771|gb|AAM75076.1| RE61442p [Drosophila melanogaster] gi|220942420|gb|ACL83753.1| Trf-PA [synthetic construct] gi|220955718|gb|ACL90402.1| Trf-PA [synthetic construct] gi|445085|prf||1908393A TATA-binding protein-related factor Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
FB|FBgn0010287224 Trf "TBP-related factor" [Dros 0.533 0.647 0.586 2.7e-45
UNIPROTKB|O13270302 TBP "TATA-box-binding protein" 0.533 0.480 0.558 1.9e-42
UNIPROTKB|Q6JLB1302 TBP "TATA-binding protein" [Ga 0.533 0.480 0.558 1.9e-42
UNIPROTKB|Q2HJ52319 TBP "TATA-box-binding protein" 0.533 0.454 0.558 1.9e-42
UNIPROTKB|F1PQA5324 TBP "Uncharacterized protein" 0.533 0.447 0.558 1.9e-42
UNIPROTKB|P20226339 TBP "TATA-box-binding protein" 0.533 0.427 0.558 1.9e-42
UNIPROTKB|I3L7Z5273 TBP "Uncharacterized protein" 0.533 0.531 0.558 1.9e-42
UNIPROTKB|I3LF81273 TBP "Uncharacterized protein" 0.533 0.531 0.558 1.9e-42
UNIPROTKB|P27633297 tbp "TATA-box-binding protein" 0.533 0.488 0.558 1.9e-42
UNIPROTKB|P53360318 TBP "TATA-box-binding protein" 0.533 0.455 0.558 1.9e-42
FB|FBgn0010287 Trf "TBP-related factor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 85/145 (58%), Positives = 117/145 (80%)

Query:   128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
             +N+V T SV C LDL  INSR R SEY+P +F G+IM++ +PR T L F++GK++  GA+
Sbjct:    52 QNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGAR 111

Query:   188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
             +E +  + SRKFA+IL++LG P+K+  +K+ NIV T D+RFP++L+ L+HVH QFSSYEP
Sbjct:   112 NEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYEP 171

Query:   248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
             E+FPGLIYRMVKPR+VLLIFVNG++
Sbjct:   172 EMFPGLIYRMVKPRIVLLIFVNGKV 196
GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS;IDA
GO:0005669 "transcription factor TFIID complex" evidence=ISS;IDA
GO:0001075 "RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly" evidence=IDA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0001093 "TFIIB-class transcription factor binding" evidence=IPI
GO:0001092 "TFIIA-class transcription factor binding" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=IEP
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0003677 "DNA binding" evidence=IDA;TAS
GO:0006383 "transcription from RNA polymerase III promoter" evidence=IDA
GO:0008134 "transcription factor binding" evidence=IPI
GO:0006359 "regulation of transcription from RNA polymerase III promoter" evidence=IDA;TAS
GO:0005667 "transcription factor complex" evidence=IPI
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS
GO:0001046 "core promoter sequence-specific DNA binding" evidence=IPI
UNIPROTKB|O13270 TBP "TATA-box-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6JLB1 TBP "TATA-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ52 TBP "TATA-box-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQA5 TBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P20226 TBP "TATA-box-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7Z5 TBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LF81 TBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P27633 tbp "TATA-box-binding protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|P53360 TBP "TATA-box-binding protein" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P13393TBP_YEASTNo assigned EC number0.55470.52940.6yesN/A
Q28GG8TBP_XENTRNo assigned EC number0.55470.52940.4848yesN/A
P91809TBP_STRPUNo assigned EC number0.54100.52940.5433yesN/A
Q42808TBP_SOYBNNo assigned EC number0.53240.55880.76yesN/A
P28148TBP2_ARATHNo assigned EC number0.54540.55880.76yesN/A
P32085TBP_CAEELNo assigned EC number0.53280.55140.4411yesN/A
Q12731TBP_EMENINo assigned EC number0.54790.52940.5373yesN/A
P29037TBP_MOUSENo assigned EC number0.55470.52940.4556yesN/A
Q27896TRF_DROMENo assigned EC number0.58210.52940.6428yesN/A
O13270TBP_CHICKNo assigned EC number0.55470.52940.4768yesN/A
Q8W0W4TBP2_ORYSJNo assigned EC number0.53240.55880.7487yesN/A
P17871TBP_SCHPONo assigned EC number0.50560.64330.7575yesN/A
Q2HJ52TBP_BOVINNo assigned EC number0.55470.52940.4514yesN/A
P20226TBP_HUMANNo assigned EC number0.55470.52940.4247yesN/A
Q7SXL3TBP_DANRENo assigned EC number0.55470.52940.4768yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
cd04516174 cd04516, TBP_eukaryotes, eukaryotic TATA box bindi 3e-74
PLN00062179 PLN00062, PLN00062, TATA-box-binding protein; Prov 6e-70
cd00652174 cd00652, TBP_TLF, TATA box binding protein (TBP): 2e-66
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 2e-54
cd00652174 cd00652, TBP_TLF, TATA box binding protein (TBP): 2e-49
cd04516174 cd04516, TBP_eukaryotes, eukaryotic TATA box bindi 7e-46
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 1e-45
PLN00062179 PLN00062, PLN00062, TATA-box-binding protein; Prov 3e-44
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 4e-40
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 2e-39
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 3e-38
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 1e-37
cd04517174 cd04517, TLF, TBP-like factors (TLF; also called T 1e-34
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 8e-29
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 1e-28
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 6e-24
cd04517174 cd04517, TLF, TBP-like factors (TLF; also called T 6e-22
cd00652 174 cd00652, TBP_TLF, TATA box binding protein (TBP): 4e-08
cd00751386 cd00751, thiolase, Thiolase are ubiquitous enzymes 0.004
>gnl|CDD|239952 cd04516, TBP_eukaryotes, eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information 
 Score =  224 bits (572), Expect = 3e-74
 Identities = 86/144 (59%), Positives = 114/144 (79%)

Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
           N+V T+++GC LDL +I  R R +EYNP +F  +IM+I  P+TT L F SGK++  GAK 
Sbjct: 6   NIVATVNLGCKLDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKS 65

Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
           E D KLA+RK+A+I+++LG P K+  FKI NIV +CDV+FP++L+ L H H QFSSYEPE
Sbjct: 66  EDDSKLAARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEGLAHAHKQFSSYEPE 125

Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
           LFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 126 LFPGLIYRMVKPKIVLLIFVSGKI 149

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. Length = 174
>gnl|CDD|177693 PLN00062, PLN00062, TATA-box-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|239952 cd04516, TBP_eukaryotes, eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|177693 PLN00062, PLN00062, TATA-box-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|239953 cd04517, TLF, TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|239953 cd04517, TLF, TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
COG2101185 SPT15 TATA-box binding protein (TBP), component of 100.0
PRK00394179 transcription factor; Reviewed 100.0
cd04518174 TBP_archaea archaeal TATA box binding protein (TBP 100.0
PLN00062179 TATA-box-binding protein; Provisional 100.0
cd04516174 TBP_eukaryotes eukaryotic TATA box binding protein 100.0
cd00652174 TBP_TLF TATA box binding protein (TBP): Present in 100.0
cd04517174 TLF TBP-like factors (TLF; also called TLP, TRF, T 100.0
KOG3302|consensus200 100.0
cd04516174 TBP_eukaryotes eukaryotic TATA box binding protein 100.0
COG2101185 SPT15 TATA-box binding protein (TBP), component of 100.0
PLN00062179 TATA-box-binding protein; Provisional 100.0
PRK00394179 transcription factor; Reviewed 100.0
cd04518174 TBP_archaea archaeal TATA box binding protein (TBP 100.0
cd00652174 TBP_TLF TATA box binding protein (TBP): Present in 100.0
KOG3302|consensus200 100.0
cd04517174 TLF TBP-like factors (TLF; also called TLP, TRF, T 100.0
PF0035286 TBP: Transcription factor TFIID (or TATA-binding p 99.97
PF0035286 TBP: Transcription factor TFIID (or TATA-binding p 99.95
PF1185881 DUF3378: Domain of unknown function (DUF3378); Int 96.44
PF1185881 DUF3378: Domain of unknown function (DUF3378); Int 95.94
COG4871193 Uncharacterized protein conserved in archaea [Func 95.46
COG4871193 Uncharacterized protein conserved in archaea [Func 94.52
TIGR00716 284 rnhC ribonuclease HIII. Two types of ribonuclease 93.05
COG1039 297 RnhC Ribonuclease HIII [DNA replication, recombina 92.58
TIGR00716284 rnhC ribonuclease HIII. Two types of ribonuclease 92.13
PRK00996 304 ribonuclease HIII; Provisional 92.02
COG1039297 RnhC Ribonuclease HIII [DNA replication, recombina 89.96
PRK00996304 ribonuclease HIII; Provisional 89.17
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 88.5
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 85.73
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-62  Score=420.60  Aligned_cols=177  Identities=36%  Similarity=0.542  Sum_probs=169.9

Q ss_pred             cCCcceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHH
Q psy16701         32 KNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFA  111 (272)
Q Consensus        32 ~~~~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~  111 (272)
                      .+..++|+|||||++|+++|||++++..++|+||||++|||+++|+++|++++|||+||||+||||||++|++.|.++++
T Consensus         4 ~~~~i~IeNIVAS~~L~~elDL~~~~~~l~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaKs~ed~~~av~~~~   83 (185)
T COG2101           4 SEPTITIENIVASVDLGQELDLEEVALDLPGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAKSVEDVHRAVKKLA   83 (185)
T ss_pred             CCCccEEEEEEEEechhhhccHHHHHhhCCCCccCHhHCCeeEEEecCCcceEEEEecCcEEEeccCcHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCc--eeeeEEEEEEEEEEeCCCCChhhHhhcCC--CeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEccc
Q psy16701        112 KILKQLGHPE--IIFFFFRNMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK  187 (272)
Q Consensus       112 ~~L~~lg~~~--~~~~~I~NVVas~~l~~~ldL~~la~~~~--n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGak  187 (272)
                      ++|+++|.+.  .+.++|||||||+|++.++||+.+|..+.  |++|||||||||+||+.+|++++|||+|||+||||||
T Consensus        84 ~~L~~~g~~~~~~p~i~iQNIVaSadL~~~lnL~~iA~~lg~e~~eYEPEqFPGLVYRl~~P~VV~LiF~SGK~ViTGaK  163 (185)
T COG2101          84 KKLKDGGIDIDFEPEIKVQNIVASADLGVELNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPRVVLLLFGSGKLVITGAK  163 (185)
T ss_pred             HHHHhcCcCcCCCCceEEEEEEEEeccCccccHHHHHHhccccccccccccCCeeEEEcCCCCEEEEEecCCcEEEecCC
Confidence            9999998763  57999999999999999999999998765  5999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhCCC
Q psy16701        188 HEHDCKLASRKFAKILKQLGH  208 (272)
Q Consensus       188 S~e~~~~A~~ki~~iL~klg~  208 (272)
                      +++|++.|++++.+.|+++|.
T Consensus       164 ~~ed~~~Av~~i~~~L~elgl  184 (185)
T COG2101         164 SEEDAEQAVEKIQSRLEELGL  184 (185)
T ss_pred             CHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999974

>PRK00394 transcription factor; Reviewed Back     alignment and domain information
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>PLN00062 TATA-box-binding protein; Provisional Back     alignment and domain information
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>KOG3302|consensus Back     alignment and domain information
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>PLN00062 TATA-box-binding protein; Provisional Back     alignment and domain information
>PRK00394 transcription factor; Reviewed Back     alignment and domain information
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>KOG3302|consensus Back     alignment and domain information
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ] Back     alignment and domain information
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ] Back     alignment and domain information
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3 Back     alignment and domain information
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3 Back     alignment and domain information
>COG4871 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>COG4871 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
1rm1_A240 Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex L 1e-47
1cdw_A179 Human Tbp Core Domain Complexed With Dna Length = 1 2e-47
1tgh_A185 Tata Binding Protein (Tbp)DNA COMPLEX Length = 185 2e-47
1nvp_A181 Human TfiiaTBPDNA COMPLEX Length = 181 2e-47
1c9b_B180 Crystal Structure Of A Human Tbp Core Domain-Human 3e-47
1jfi_C185 Crystal Structure Of The Nc2-Tbp-Dna Ternary Comple 3e-47
1ytb_A180 Crystal Structure Of A Yeast TbpTATA-Box Complex Le 4e-47
1tbp_A180 Crystal Structure Of Yeast Tata-Binding Protein And 4e-47
1vok_A200 Arabidopsis Thaliana Tbp (Dimer) Length = 200 2e-45
1vtl_E186 Co-Crystal Structure Of Tbp Recognizing The Minor G 3e-45
1vto_A190 1.9 A Resolution Refined Structure Of Tbp Recognizi 3e-45
3oc3_C218 Crystal Structure Of The Mot1 N-Terminal Domain In 3e-43
3eik_A218 Double Stranded Dna Binding Protein Length = 218 3e-43
2z8u_A188 Methanococcus Jannaschii Tbp Length = 188 1e-23
2z8u_A188 Methanococcus Jannaschii Tbp Length = 188 3e-21
1mp9_A198 Tbp From A Mesothermophilic Archaeon, Sulfolobus Ac 3e-23
1pcz_A191 Structure Of Tata-Binding Protein Length = 191 5e-21
1pcz_A191 Structure Of Tata-Binding Protein Length = 191 7e-19
1d3u_A181 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+T 2e-20
1d3u_A181 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+T 7e-19
1ais_A182 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA- 2e-20
1ais_A182 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA- 7e-19
>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex Length = 240 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
            +N+V T+++GC LDL  +    R +EYNP +F  +IM+I  P+TT L F SGK+++ GA
Sbjct: 67  LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
           K E D KLASRK+A+I++++G   K+  FKI NIV +CDV+FP++L+ L   H  FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
           PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna Length = 179 Back     alignment and structure
>pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX Length = 185 Back     alignment and structure
>pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX Length = 181 Back     alignment and structure
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib Core Domain Complex Bound To An Extended, Modified Adenoviral Major Late Promoter (Admlp) Length = 180 Back     alignment and structure
>pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex Length = 185 Back     alignment and structure
>pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex Length = 180 Back     alignment and structure
>pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model For Interaction With Dna Length = 180 Back     alignment and structure
>pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer) Length = 200 Back     alignment and structure
>pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove Of A Tata Element Length = 186 Back     alignment and structure
>pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The Minor Groove Of Tataaaag Length = 190 Back     alignment and structure
>pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex With Tbp Length = 218 Back     alignment and structure
>pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein Length = 218 Back     alignment and structure
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp Length = 188 Back     alignment and structure
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp Length = 188 Back     alignment and structure
>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus Acidocaldarius Length = 198 Back     alignment and structure
>pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein Length = 191 Back     alignment and structure
>pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein Length = 191 Back     alignment and structure
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA- Box Complex From Pyrococcus Woesei Length = 181 Back     alignment and structure
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA- Box Complex From Pyrococcus Woesei Length = 181 Back     alignment and structure
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box Complex From Pyrococcus Woesei Length = 182 Back     alignment and structure
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box Complex From Pyrococcus Woesei Length = 182 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 3e-58
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 5e-46
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 5e-52
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 8e-46
3eik_A 218 Tata-box-binding protein; DNA-binding, initiation 1e-11
1mp9_A198 Tata-binding protein; transcription regulation, DN 3e-51
1mp9_A198 Tata-binding protein; transcription regulation, DN 2e-50
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 3e-50
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 6e-50
1ais_A 182 TBP, protein (tata-binding protein); hyperthermoph 8e-12
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 7e-50
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 3e-48
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 5e-19
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 1e-49
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 1e-44
1ytb_A 180 Protein (tata binding protein (TBP)); protein-DNA 2e-11
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
 Score =  185 bits (470), Expect = 3e-58
 Identities = 87/186 (46%), Positives = 121/186 (65%), Gaps = 3/186 (1%)

Query: 87  FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQIN 146
            + G       + E D K A+ +  K               +N+V T+++GC LDL  + 
Sbjct: 30  NRDGTKPATTFQSEEDIKRAAPESEKDTSATSGIVPTL---QNIVATVTLGCRLDLKTVA 86

Query: 147 SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
              R +EYNP +F  +IM+I  P+TT L F SGK+++ GAK E D KLASRK+A+I++++
Sbjct: 87  LHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKI 146

Query: 207 GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLI 266
           G   K+  FKI NIV +CDV+FP++L+ L   H  FSSYEPELFPGLIYRMVKP++VLLI
Sbjct: 147 GFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLI 206

Query: 267 FVNGRI 272
           FV+G+I
Sbjct: 207 FVSGKI 212
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 100.0
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 100.0
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 100.0
1mp9_A198 Tata-binding protein; transcription regulation, DN 100.0
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 100.0
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 100.0
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 100.0
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 100.0
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 100.0
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 100.0
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 100.0
1mp9_A198 Tata-binding protein; transcription regulation, DN 100.0
2d0b_A 310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 91.6
3vn5_A 257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 90.88
2d0b_A310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 88.73
3vn5_A257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 87.94
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Back     alignment and structure
Probab=100.00  E-value=2.1e-62  Score=428.40  Aligned_cols=176  Identities=32%  Similarity=0.511  Sum_probs=163.5

Q ss_pred             CCcceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHH
Q psy16701         33 NRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK  112 (272)
Q Consensus        33 ~~~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~  112 (272)
                      .+.++|+|||||++|+|+|||++|+..++|+||||++|||++||+++|+++++||+||||+||||+|+++++.|++++++
T Consensus        10 ~~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~   89 (188)
T 2z8u_A           10 EPEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIK   89 (188)
T ss_dssp             -CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCC--ceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHH
Q psy16701        113 ILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH  190 (272)
Q Consensus       113 ~L~~lg~~--~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e  190 (272)
                      +|+++|++  ...+++|||||||++++++|||+.|+..+++++||||+||||+||+++|+++++||+|||||||||||++
T Consensus        90 ~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~  169 (188)
T 2z8u_A           90 ELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEE  169 (188)
T ss_dssp             HHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHH
T ss_pred             HHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHH
Confidence            99999996  4689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC
Q psy16701        191 DCKLASRKFAKILKQLGH  208 (272)
Q Consensus       191 ~~~~A~~ki~~iL~klg~  208 (272)
                      +++.|+++++++|+++|+
T Consensus       170 ~~~~A~~~i~~~L~~~~~  187 (188)
T 2z8u_A          170 DAKRALKKILDTIKEVQE  187 (188)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999999874
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 2e-31
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 4e-26
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 2e-18
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 4e-26
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 6e-26
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 5e-19
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 8e-26
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 1e-25
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 3e-20
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 1e-25
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 1e-25
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 1e-20
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 8e-25
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 1e-24
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 1e-19
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 5e-21
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 5e-21
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 2e-18
d1m3ka2124 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zooglo 0.002
d1ulqa2125 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase 0.003
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
           HP  I    +N+V T+++ C LDL  I  + R +EYNP +F  +IM+I  P+TT L F S
Sbjct: 1   HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 60

Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
           GK++  GAK E   K+A+RK+A+I+++LG P K++ FKI
Sbjct: 61  GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Length = 124 Back     information, alignment and structure
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d1qnaa199 TATA-box binding protein (TBP), C-terminal domain 100.0
d1qnaa199 TATA-box binding protein (TBP), C-terminal domain 99.97
d1mp9a192 TATA-box binding protein (TBP), C-terminal domain 99.97
d1aisa289 TATA-box binding protein (TBP), C-terminal domain 99.97
d1aisa192 TATA-box binding protein (TBP), C-terminal domain 99.97
d1mp9a2101 TATA-box binding protein (TBP), C-terminal domain 99.96
d1mp9a192 TATA-box binding protein (TBP), C-terminal domain 99.96
d1qnaa283 TATA-box binding protein (TBP), C-terminal domain 99.96
d1aisa192 TATA-box binding protein (TBP), C-terminal domain 99.96
d1aisa289 TATA-box binding protein (TBP), C-terminal domain 99.96
d1mp9a2101 TATA-box binding protein (TBP), C-terminal domain 99.95
d1qnaa283 TATA-box binding protein (TBP), C-terminal domain 99.93
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.5e-35  Score=228.67  Aligned_cols=98  Identities=45%  Similarity=0.786  Sum_probs=94.7

Q ss_pred             CceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHH
Q psy16701        120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF  199 (272)
Q Consensus       120 ~~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki  199 (272)
                      |....++|||||||++++++|||++|+.+++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++
T Consensus         2 p~~~~p~i~NiVas~~l~~~idL~~la~~~~n~eYePe~fpgli~R~~~P~~t~lIF~SGKivitGaks~~~~~~a~~~i   81 (99)
T d1qnaa1           2 PSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKY   81 (99)
T ss_dssp             TTSCCCEEEEEEEEEECCSCCCHHHHHHHCSSEEECTTTCSEEEEEETTTTEEEEEETTSEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEEEEEcCCcccHHHHHhhCCCCEECcccCCEEEEEeCCCcEEEEEEcCCEEEEeccCCHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCcceEE
Q psy16701        200 AKILKQLGHPIKYQGFKI  217 (272)
Q Consensus       200 ~~iL~klg~~~~~~~f~V  217 (272)
                      +++|+++|+++++.+|+|
T Consensus        82 ~~~l~k~g~~v~~~~f~i   99 (99)
T d1qnaa1          82 ARIVQKLGFPAKFKDFKI   99 (99)
T ss_dssp             HHHHHHTTCCCCCEEEEE
T ss_pred             HHHHHHcCCCCcccccCC
Confidence            999999999999999986
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure