Psyllid ID: psy16829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MNNTVQAMGYVLDTVKLMIRFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALALFE
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHEHHHcccccccEEEcccccEccccHHHHHHHccccccccccccccHccccEccccHHHHHHHHccccccccccccccEccccHHHHHEEccccccccccccHccccEccccHHHHHHHHccccccccccHccccEccccHHHHHHHHccccccccccHccccEccccHHHHHHHHccccccccccccHccccEccccHHHHHHHHccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNNTVQAMGYVLDTVKLMIRFKGilgssglnllnnesassqvqyeedkdyddgedkpllLTCVECNEDFINVNDFVshlrghdstshvcdicleafpssddrdlHFLSHltsdglyqcneceFVGKRLTHLKTHKKIHEKVYGVYCdvcgrgfhqnneVTLHKikehnafpfqcEICHkiftnkstmwshkkahkpedqipwecehchkvypnkrsykrhkqVHLGvkheceggpipalalfe
Flexible Loop (DISEMBL)
MNNTVQAMGYVLDTVKLMIRFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAhkpedqipweCEHCHKVYPNKRSYKRHKQVHLGvkheceggpipalalfe
Low Complexity Region (SEG)
MNNTVQAMGYVLDTVKLMIRFKgilgssglnllnnesassQVQyeedkdyddgedkPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALALFE
Disordered region (IsUnstruct)
*****QAMGYVLDTVKLMIRFKGILGSSGLNLL***********************PLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGG*********
Disordered Region (DISOPRED)
*NNTVQAMGYVLDTVKLMIRFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALALF*
Disordered Region (DISEMBL)
MNNTVQAMGYVLDTVKLMIRFKGILGSSGLNLLNNE****************GEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKST***********DQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALALFE
Disordered Region (DISPRO)
**NTVQAMGYVLDTVKLMIRFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPAL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNTVQAMGYVLDTVKLMIRFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALALFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
O75437	659	Zinc finger protein 254 O	yes	N/A	0.683	0.251	0.371	3e-20
Q9H8G1	570	Zinc finger protein 430 O	no	N/A	0.691	0.294	0.346	7e-19
Q03938	601	Zinc finger protein 90 OS	no	N/A	0.699	0.282	0.340	1e-18
Q6ZN19	808	Zinc finger protein 841 O	no	N/A	0.695	0.209	0.331	1e-18
A6NK75	572	Zinc finger protein 98 OS	no	N/A	0.691	0.293	0.329	2e-18
Q05481	1191	Zinc finger protein 91 OS	no	N/A	0.683	0.139	0.342	3e-18
Q8IYN0	542	Zinc finger protein 100 O	no	N/A	0.691	0.309	0.335	4e-18
Q9BUY5	554	Zinc finger protein 426 O	no	N/A	0.679	0.297	0.321	4e-18
Q5R5U3	672	Zinc finger protein 271 O	no	N/A	0.695	0.251	0.310	5e-18
Q8IYB9	648	Zinc finger protein 595 O	no	N/A	0.728	0.273	0.342	5e-18

>sp|O75437|ZN254_HUMAN Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 PE=2 SV=3

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 324 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 382

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 383 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 440

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 441 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 493

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q9H8G1|ZN430_HUMAN Zinc finger protein 430 OS=Homo sapiens GN=ZNF430 PE=2 SV=3

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + F   +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 235 CEECGKVFNWFSTLTRHRRIHTGEKPYKCEQCGKAFKQSSTLTTHKIIH-TGEKPYRCEE 293

Query: 121 CEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKI 180
           C     R +HL THK+IH       C+ CGR F++++ +T HKI      P++CE C K 
Sbjct: 294 CGKTFNRSSHLTTHKRIHTGEKPYRCEECGRAFNRSSHLTTHKIIHTGEKPYKCEECGKA 353

Query: 181 FTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           F   ST+ +HK  H  E   P++CE C K +       +HK +H G K ++CE
Sbjct: 354 FNQSSTLTTHKIIHAGEK--PYKCEECGKAFYRFSYLTKHKIIHTGEKFYKCE 404

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q03938|ZNF90_HUMAN Zinc finger protein 90 OS=Homo sapiens GN=ZNF90 PE=2 SV=3

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 6/176 (3%)

Query: 54  EDKPLLLTCVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTS 112
           E+KP    C EC++ F   +   +H   H     + C+ C +AF  S +   H +SH T 
Sbjct: 421 EEKPY--KCQECDKVFKRSSALSTHKIIHSGEKPYKCEECGKAFKRSSNLTTHKISH-TE 477

Query: 113 DGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPF 172
           + LY+C EC+   K  + L THK IH       C+ CG+ F +++ ++ HKI    A P+
Sbjct: 478 EKLYKCQECDKAFKYSSALSTHKIIHSGENPYKCEECGKAFKRSSVLSKHKIIHTGAKPY 537

Query: 173 QCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           +CE C K F   S + SHK +H  E   P++CE C K +        HK++H+G K
Sbjct: 538 KCEECGKAFKRSSQLTSHKISHTGEK--PYKCEECGKAFNLSSDLNTHKRIHIGQK 591

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZN19|ZN841_HUMAN Zinc finger protein 841 OS=Homo sapiens GN=ZNF841 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 55  DKPLLLTCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSD 113
           DKP +  C EC + F   +    H R H     + C+ C + F  S     H   H T D
Sbjct: 226 DKPYI--CNECGKSFSKSSHLAVHQRIHTGEKPYKCNRCGKCFSQSSSLATHQTVH-TGD 282

Query: 114 GLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
             Y+CNEC    KR + L  H  IH       CDVCG+ F+QN+++  H+I      P++
Sbjct: 283 KPYKCNECGKTFKRNSSLTAHHIIHAGKKPYTCDVCGKVFYQNSQLVRHQIIHTGETPYK 342

Query: 174 CEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           C  C K+F  +S +  H++ H  E   P++C  C KV+        H++VH G K
Sbjct: 343 CNECGKVFFQRSRLAGHRRIHTGEK--PYKCNECGKVFSQHSHLAVHQRVHTGEK 395

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A6NK75|ZNF98_HUMAN Zinc finger protein 98 OS=Homo sapiens GN=ZNF98 PE=2 SV=4

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + F  ++   +H R H     + C+ C +AF  S     H   H   +  Y+C  
Sbjct: 352 CEECGKAFSRLSHLTTHKRIHSGEKPYKCEECGKAFKQSSTLTTHKRIH-AGEKFYKCEV 410

Query: 121 CEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKI 180
           C     R +HL THK+IH       C+ CG+ F+ ++++T HKI      P++CE C K 
Sbjct: 411 CSKAFSRFSHLTTHKRIHTGEKPYKCEECGKAFNLSSQLTTHKIIHTGEKPYKCEECGKA 470

Query: 181 FTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           F   ST+  HK  H  E   P++CE C K +        HK +H G K ++CE
Sbjct: 471 FNQSSTLSKHKVIHTGEK--PYKCEECGKAFNQSSHLTTHKMIHTGEKPYKCE 521

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q05481|ZNF91_HUMAN Zinc finger protein 91 OS=Homo sapiens GN=ZNF91 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + F + +    H R H     + C  C +AF +S     H ++H T +  Y+C E
Sbjct: 632 CEECGKAFSHSSALAKHKRIHTGEKPYKCKECGKAFSNSSTLANHKITH-TEEKPYKCKE 690

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C+   KRL+ L  HK IH  EK+Y   C+ CG+ F++++ +T+HK       P++CE C 
Sbjct: 691 CDKTFKRLSTLTKHKIIHAGEKLYK--CEECGKAFNRSSNLTIHKFIHTGEKPYKCEECG 748

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   S++  HK+ H  E   P++C+ C K +    +  RHK++H G K ++CE
Sbjct: 749 KAFNWSSSLTKHKRIHTREK--PFKCKECGKAFIWSSTLTRHKRIHTGEKPYKCE 801

Homo sapiens (taxid: 9606)

>sp|Q8IYN0|ZN100_HUMAN Zinc finger protein 100 OS=Homo sapiens GN=ZNF100 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C +C + F   +   +H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 235 CKDCGKAFNWFSTLTTHRRIHTGEKPYKCEECGKAFNRSSHLTTHKIIH-TGEKPYRCEE 293

Query: 121 CEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKI 180
           C     R +HL THK+IH  V    C  CG+ F++++ +T H+I      P++CE C K 
Sbjct: 294 CGKAFNRSSHLTTHKRIHTGVKPYKCTECGKAFNRSSHLTTHRIIHTGEKPYKCEECGKA 353

Query: 181 FTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           F   ST+ +HK  H  E   P++CE C K +       +HK  H G K ++CE
Sbjct: 354 FNQSSTLTTHKITHAGEK--PYKCEECGKAFYRFSYLTKHKTSHTGEKFYKCE 404

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9BUY5|ZN426_HUMAN Zinc finger protein 426 OS=Homo sapiens GN=ZNF426 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 55  DKPLLLTCVECNEDFINVNDFVSHLRGH-DSTSHVCDICLEAFPSSDDRDLHFLSHLTSD 113
           +KP +  CVEC + F   ++   HLR H +  +  C IC + F      + H  +H ++ 
Sbjct: 389 EKPFV--CVECGKAFAVSSNLSGHLRTHTEEKACECKICGKVFGYPSCLNNHMRTH-SAQ 445

Query: 114 GLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
             Y C EC       THLK H +IH       C  CG+ F  ++   +H+       P++
Sbjct: 446 KPYTCKECGKAFNYSTHLKIHMRIHTGEKPYECKQCGKAFSHSSSFQIHERTHTGEKPYE 505

Query: 174 CEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
           C+ C K FT  S+   H+K H  E   P++C+ C K Y + RS +RH+Q+H
Sbjct: 506 CKECGKAFTCSSSFRIHEKTHTEEK--PYKCQQCGKAYSHPRSLRRHEQIH 554

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R5U3|ZN271_PONAB Zinc finger protein 271 OS=Pongo abelii GN=ZNF271 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 5/174 (2%)

Query: 61  TCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCN 119
           TC +CN+ F   +D + H R H     + CD+C +AF  S D  LH   H T +  Y CN
Sbjct: 220 TCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCAKAFSQSSDLILHQRIH-TGEKPYPCN 278

Query: 120 ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHK 179
           +C     + + L  H++IH       C+ CG+ F+Q++ + LH+       P+ C+ C K
Sbjct: 279 QCSKSFSQNSDLIKHRRIHTGEKPYKCNECGKAFNQSSVLILHQRIHTGEKPYPCDQCSK 338

Query: 180 IFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
            F+  S + +H++ H  E   P+ C  C+K++  +    +H ++H G K +EC+
Sbjct: 339 TFSRLSDLINHQRIHTGEK--PYPCNQCNKMFSRRSDLVKHHRIHTGEKPYECD 390

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q8IYB9|ZN595_HUMAN Zinc finger protein 595 OS=Homo sapiens GN=ZNF595 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 46  EDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDL 104
           E K+   GE KP   TC +C + F   +  + H   H     + C+ C +AF  S   + 
Sbjct: 329 EHKNIHTGE-KPY--TCEKCGKAFNQSSSLIIHRSIHSEQKLYKCEECGKAFTWSSSLNK 385

Query: 105 HFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKI 164
           H   H T +  Y C EC     R +HL  HK+IH       C+ CG+ F+Q++ + LHK 
Sbjct: 386 HKRIH-TGEKPYACEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKR 444

Query: 165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
                 P++CE C K FT  +T+  HKK H  E   P++CE C K +    S   HK +H
Sbjct: 445 IHSGQKPYKCEECGKAFTRSTTLNEHKKIHTGEK--PYKCEECGKAFIWSASLNEHKNIH 502

Query: 225 LGVK 228
            G K
Sbjct: 503 TGEK 506

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
328715760	372	PREDICTED: zinc finger protein 502-like	0.707	0.462	0.331	1e-20
426388075	685	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.683	0.242	0.371	1e-18
397488312	699	PREDICTED: zinc finger protein 254-like,	0.683	0.237	0.371	1e-18
116256449	659	zinc finger protein 254 [Homo sapiens] g	0.683	0.251	0.371	2e-18
71051560	659	Zinc finger protein 254 [Homo sapiens]	0.683	0.251	0.371	2e-18
114679826	659	PREDICTED: zinc finger protein 254 isofo	0.683	0.251	0.371	2e-18
158256008	650	unnamed protein product [Homo sapiens]	0.683	0.255	0.371	3e-18
426343507	551	PREDICTED: zinc finger protein 595-like	0.695	0.306	0.36	3e-18
194382622	574	unnamed protein product [Homo sapiens]	0.683	0.289	0.371	3e-18
332262450	650	PREDICTED: zinc finger protein 254 isofo	0.683	0.255	0.371	3e-18

>gi|328715760|ref|XP_001948978.2| PREDICTED: zinc finger protein 502-like [Acyrthosiphon pisum]

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 3/175 (1%)

Query: 59  LLTCVECNEDFINVNDFVSHLR-GHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQ 117
              C +C E F   +    H    H  +++ C+ C + F +   R  H      S   Y 
Sbjct: 76  FFKCRKCEESFNTKHALKDHQNDAHPHSAYKCNCCDKTFDTMCARQKHKKEEHPS-VTYS 134

Query: 118 CNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEIC 177
           C+ C++     + ++ H+  H+KVY V+CD C  GF   +E+  H+IK H A P+QC+ C
Sbjct: 135 CDTCDYRTPYKSRMQYHENRHKKVYSVFCDTCQAGFFNKDELATHEIKNHGAEPYQCDRC 194

Query: 178 HKIFTNKSTMWSHKKAHKPE-DQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHEC 231
            K+ T+K+ ++SH K H    + + ++CE C K +    SY+RH Q HLG+K+EC
Sbjct: 195 SKLCTSKTNLYSHMKVHTTSAESVSYQCETCGKAFRRIGSYRRHIQSHLGLKYEC 249

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|426388075|ref|XP_004060476.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 254 [Gorilla gorilla gorilla]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 350 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 408

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 409 CGKAFKQLSTLTTHKIIHVGEKLYQ--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 466

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 467 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 519

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397488312|ref|XP_003815211.1| PREDICTED: zinc finger protein 254-like, partial [Pan paniscus]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 309 CEECGKAFIWSSTLTRHKRMHTGERPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 367

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 368 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 425

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 426 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 478

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116256449|ref|NP_975011.3| zinc finger protein 254 [Homo sapiens] gi|215274193|sp|O75437.3|ZN254_HUMAN RecName: Full=Zinc finger protein 254; AltName: Full=Bone marrow zinc finger 5; Short=BMZF-5; AltName: Full=Hematopoietic cell-derived zinc finger protein 1; Short=HD-ZNF1; AltName: Full=Zinc finger protein 539; AltName: Full=Zinc finger protein 91-like gi|119605366|gb|EAW84960.1| hCG19985, isoform CRA_a [Homo sapiens] gi|141794888|gb|AAI39750.1| Zinc finger protein 254 [Homo sapiens]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 324 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 382

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 383 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 440

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 441 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 493

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|71051560|gb|AAH43147.2| Zinc finger protein 254 [Homo sapiens]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 324 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 382

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 383 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 440

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 441 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 493

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114679826|ref|XP_001149923.1| PREDICTED: zinc finger protein 254 isoform 4 [Pan troglodytes]

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 324 CEECGKAFIWSSTLTRHKRMHTGERPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 382

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 383 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 440

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 441 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 493

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158256008|dbj|BAF83975.1| unnamed protein product [Homo sapiens]

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 315 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 373

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 374 CGKAFKQLSTLTTHKIIHVGEKLYK--CEDCGKGFNRSSNLTTHKIIHTGEKPYKCEECG 431

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 432 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 484

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426343507|ref|XP_004038341.1| PREDICTED: zinc finger protein 595-like [Gorilla gorilla gorilla]

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 55  DKPLLLTCVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSD 113
           +KP   TC EC + F        H R H     H C+ C +AF  S D + H + H T +
Sbjct: 268 EKPY--TCEECGKAFSRFTTLNEHKRIHTGERPHKCEECGKAFGWSTDLNKHKIIH-TGE 324

Query: 114 GLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
            LY+C EC       +HL  HK+IH       C+ CG+ F+Q++ + LHK       P++
Sbjct: 325 KLYKCEECGKAFTWSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKRIHSGQKPYK 384

Query: 174 CEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           CE C K FT  +T+  HKK H  E   P++CE C K +    S   HK +H G K
Sbjct: 385 CEECGKAFTRSTTLNEHKKIHSGEK--PYKCEECGKAFIWSASLNEHKNIHTGEK 437

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194382622|dbj|BAG64481.1| unnamed protein product [Homo sapiens]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct: 239 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 297

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 298 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 355

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 356 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 408

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332262450|ref|XP_003280274.1| PREDICTED: zinc finger protein 254 isoform 1 [Nomascus leucogenys]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 62  CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
           C EC + FI  +    H R H     + C+ C +AF  S   + H   H T +  Y+C E
Sbjct: 315 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLNTHKTIH-TGEKRYKCLE 373

Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct: 374 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 431

Query: 179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
           K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct: 432 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 484

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
UNIPROTKB|F5H2M4	574	ZNF254 "Zinc finger protein 25	0.683	0.289	0.371	2.7e-25
UNIPROTKB|O75437	659	ZNF254 "Zinc finger protein 25	0.683	0.251	0.371	4e-25
UNIPROTKB|A6NK75	572	ZNF98 "Zinc finger protein 98"	0.683	0.290	0.342	2e-24
UNIPROTKB|Q9H8G1	570	ZNF430 "Zinc finger protein 43	0.683	0.291	0.36	3.3e-24
UNIPROTKB|Q03938	601	ZNF90 "Zinc finger protein 90"	0.683	0.276	0.342	8.1e-24
UNIPROTKB|Q8TD23	568	ZNF675 "Zinc finger protein 67	0.683	0.292	0.348	1.9e-23
UNIPROTKB|Q14591	655	ZNF271 "Zinc finger protein 27	0.687	0.254	0.323	2.1e-23
UNIPROTKB|Q9P255	531	ZNF492 "Zinc finger protein 49	0.683	0.312	0.337	2.5e-23
UNIPROTKB|E1BKB3	606	ZNF568 "Uncharacterized protei	0.666	0.267	0.329	2.9e-23
UNIPROTKB|Q05481	1191	ZNF91 "Zinc finger protein 91"	0.683	0.139	0.342	3e-23

UNIPROTKB|F5H2M4 ZNF254 "Zinc finger protein 254" [Homo sapiens (taxid:9606)]

 Score = 294 (108.6 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 65/175 (37%), Positives = 95/175 (54%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct:   239 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 297

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct:   298 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 355

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct:   356 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 408

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O75437 ZNF254 "Zinc finger protein 254" [Homo sapiens (taxid:9606)]

 Score = 294 (108.6 bits), Expect = 4.0e-25, P = 4.0e-25
 Identities = 65/175 (37%), Positives = 95/175 (54%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + FI  +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct:   324 CEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIH-TGEKRYKCLE 382

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C    K+L+ L THK IH  EK+Y   C+ CG+GF++++ +T HKI      P++CE C 
Sbjct:   383 CGKAFKQLSTLTTHKIIHVGEKLYK--CEECGKGFNRSSNLTTHKIIHTGEKPYKCEECG 440

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   ST+  HK+ H  E   P++CE C K +    +  RHK++H G K ++CE
Sbjct:   441 KAFIWSSTLTKHKRIHTREK--PYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCE 493

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

UNIPROTKB|A6NK75 ZNF98 "Zinc finger protein 98" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/175 (34%), Positives = 87/175 (49%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + F  ++   +H R H     + C+ C +AF  S     H   H   +  Y+C  
Sbjct:   352 CEECGKAFSRLSHLTTHKRIHSGEKPYKCEECGKAFKQSSTLTTHKRIH-AGEKFYKCEV 410

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C     R +HL THK+IH  EK Y   C+ CG+ F+ ++++T HKI      P++CE C 
Sbjct:   411 CSKAFSRFSHLTTHKRIHTGEKPYK--CEECGKAFNLSSQLTTHKIIHTGEKPYKCEECG 468

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   ST+  HK  H  E   P++CE C K +        HK +H G K ++CE
Sbjct:   469 KAFNQSSTLSKHKVIHTGEK--PYKCEECGKAFNQSSHLTTHKMIHTGEKPYKCE 521

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9H8G1 ZNF430 "Zinc finger protein 430" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 63/175 (36%), Positives = 90/175 (51%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + F   +    H R H     + C+ C +AF  S     H + H T +  Y+C E
Sbjct:   235 CEECGKVFNWFSTLTRHRRIHTGEKPYKCEQCGKAFKQSSTLTTHKIIH-TGEKPYRCEE 293

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C     R +HL THK+IH  EK Y   C+ CGR F++++ +T HKI      P++CE C 
Sbjct:   294 CGKTFNRSSHLTTHKRIHTGEKPYR--CEECGRAFNRSSHLTTHKIIHTGEKPYKCEECG 351

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   ST+ +HK  H  E   P++CE C K +       +HK +H G K ++CE
Sbjct:   352 KAFNQSSTLTTHKIIHAGEK--PYKCEECGKAFYRFSYLTKHKIIHTGEKFYKCE 404

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q03938 ZNF90 "Zinc finger protein 90" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 8.1e-24, P = 8.1e-24
 Identities = 60/175 (34%), Positives = 93/175 (53%)

Query:    62 CVECNEDFINVNDFVSHLRGH-DSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C +C + FI+ +    H   H +   + C+ C +AF  S    +H +SH T +  Y+C E
Sbjct:   371 CDKCGKAFISSSLLYKHKISHSEKKPYKCEECGKAFKRSSTLTIHKISH-TEEKPYKCQE 429

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C+ V KR + L THK IH  EK Y   C+ CG+ F +++ +T HKI       ++C+ C 
Sbjct:   430 CDKVFKRSSALSTHKIIHSGEKPYK--CEECGKAFKRSSNLTTHKISHTEEKLYKCQECD 487

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   S + +HK  H  E+  P++CE C K +       +HK +H G K ++CE
Sbjct:   488 KAFKYSSALSTHKIIHSGEN--PYKCEECGKAFKRSSVLSKHKIIHTGAKPYKCE 540

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q8TD23 ZNF675 "Zinc finger protein 675" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 61/175 (34%), Positives = 90/175 (51%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + F   +    H   H     + C+ C +AF  S +   H   H T +  Y+C E
Sbjct:   342 CEECGKAFNRSSKLTEHKNIHTGEQPYKCEECGKAFNRSSNLTEHRKIH-TEEKPYKCKE 400

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C    K  + L THK+IH  EK Y   C+ CG+ F++++++T HK       P++CE C 
Sbjct:   401 CGKAFKHSSALTTHKRIHTGEKPYK--CEECGKAFNRSSKLTEHKKLHTGKKPYKCEECG 458

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   S +  HKK H  E  IP++CE C K + +  S   HK++H G K ++CE
Sbjct:   459 KAFIQSSKLTEHKKIHSGE--IPYKCEECGKAFKHSSSLTTHKRIHTGEKPYKCE 511

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0045671 "negative regulation of osteoclast differentiation" evidence=IDA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IDA

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0046329 "negative regulation of JNK cascade" evidence=IDA

GO:0045453 "bone resorption" evidence=TAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003677 "DNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0043508 "negative regulation of JUN kinase activity" evidence=IDA

GO:2000660 "negative regulation of interleukin-1-mediated signaling pathway" evidence=IDA

GO:0010804 "negative regulation of tumor necrosis factor-mediated signaling pathway" evidence=IDA

UNIPROTKB|Q14591 ZNF271 "Zinc finger protein 271" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 2.1e-23, P = 2.1e-23
 Identities = 57/176 (32%), Positives = 94/176 (53%)

Query:    61 TCVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCN 119
             TC +CN+ F   +D + H R H     + CD+C +AF  S D  LH   H T +  Y CN
Sbjct:   203 TCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCGKAFSQSSDLILHQRIH-TGEKPYPCN 261

Query:   120 ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEIC 177
             +C     + + L  H++IH  EK Y   C+ CG+ F+Q++ + LH+       P+ C+ C
Sbjct:   262 QCSKSFSQNSDLIKHRRIHTGEKPYK--CNECGKAFNQSSVLILHQRIHTGEKPYPCDQC 319

Query:   178 HKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
              K F+  S + +H++ H  E   P+ C  C+K++  +    +H ++H G K +EC+
Sbjct:   320 SKTFSRLSDLINHQRIHTGEK--PYPCNQCNKMFSRRSDLVKHHRIHTGEKPYECD 373

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9P255 ZNF492 "Zinc finger protein 492" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 59/175 (33%), Positives = 86/175 (49%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + F  ++   +H R H     + C+ C +AF  S     H   H   +  Y+C  
Sbjct:   311 CEECGKAFSQLSHLTTHKRIHSGEKPYKCEECGKAFKQSSTLTTHKRIH-AGEKFYKCEV 369

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C     R +HL THK+IH  EK Y   C+ CG+ F+ ++++T HKI      P++CE C 
Sbjct:   370 CSKAFSRFSHLTTHKRIHTGEKPYK--CEECGKAFNLSSQLTTHKIIHTGEKPYKCEECG 427

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   ST+  HK  H  E   P++ E C K +        HK +H G K ++CE
Sbjct:   428 KAFNQSSTLSKHKVIHTGEK--PYKYEECGKAFNQSSHLTTHKMIHTGEKPYKCE 480

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BKB3 ZNF568 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 56/170 (32%), Positives = 88/170 (51%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C +C + F   + F+ H+R H     +VC  C +AF  S    +H  +H T++  Y+CNE
Sbjct:   354 CNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNH-TAEKPYECNE 412

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C     R  +L TH+KIH  EK Y   C+ CG+ F Q + +  H+       P+ C +C 
Sbjct:   413 CGKAFSRKENLITHQKIHTGEKPYE--CNECGKAFIQMSNLIRHQRIHTGEKPYACTVCG 470

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             K F+ KS +  H+K H  E   P+ C  C K +  +++   H+++H G K
Sbjct:   471 KAFSQKSNLTEHEKIHTGEK--PYHCNQCGKAFSQRQNLLEHEKIHTGEK 518

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q05481 ZNF91 "Zinc finger protein 91" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 60/175 (34%), Positives = 95/175 (54%)

Query:    62 CVECNEDFINVNDFVSHLRGHDSTS-HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
             C EC + F + +    H R H     + C  C +AF +S     H ++H T +  Y+C E
Sbjct:   632 CEECGKAFSHSSALAKHKRIHTGEKPYKCKECGKAFSNSSTLANHKITH-TEEKPYKCKE 690

Query:   121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
             C+   KRL+ L  HK IH  EK+Y   C+ CG+ F++++ +T+HK       P++CE C 
Sbjct:   691 CDKTFKRLSTLTKHKIIHAGEKLYK--CEECGKAFNRSSNLTIHKFIHTGEKPYKCEECG 748

Query:   179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
             K F   S++  HK+ H  E   P++C+ C K +    +  RHK++H G K ++CE
Sbjct:   749 KAFNWSSSLTKHKRIHTREK--PFKCKECGKAFIWSSTLTRHKRIHTGEKPYKCE 801

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.96
KOG1074|consensus	958		99.92
KOG3608|consensus	467		99.92
KOG3608|consensus	467		99.91
KOG3623|consensus	1007		99.9
KOG3623|consensus	1007		99.86
KOG1074|consensus	958		99.83
KOG3576|consensus	267		99.74
KOG3576|consensus	267		99.73
PLN03086	567	PRLI-interacting factor K; Provisional	99.49
PLN03086	567	PRLI-interacting factor K; Provisional	99.36
PHA00733	128	hypothetical protein	99.32
PHA02768	55	hypothetical protein; Provisional	99.19
PHA00733	128	hypothetical protein	99.14
PHA02768	55	hypothetical protein; Provisional	98.99
KOG3993|consensus	500		98.91
KOG3993|consensus	500		98.86
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.74
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.71
PHA00616	44	hypothetical protein	98.68
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.6
PHA00616	44	hypothetical protein	98.56
PHA00732	79	hypothetical protein	98.45
PHA00732	79	hypothetical protein	98.44
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.28
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.12
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.03
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.01
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.95
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.79
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.72
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.69
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.61
smart00355	26	ZnF_C2H2 zinc finger.	97.59
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.37
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.35
KOG2231|consensus	669		97.28
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.23
KOG2231|consensus	669		97.17
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.12
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.07
PRK04860	160	hypothetical protein; Provisional	97.03
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.0
smart00355	26	ZnF_C2H2 zinc finger.	96.87
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.87
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.59
PRK04860	160	hypothetical protein; Provisional	96.55
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.41
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.4
KOG1146|consensus	1406		96.37
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.26
KOG1146|consensus	1406		95.5
COG5048	467	FOG: Zn-finger [General function prediction only]	95.32
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.29
KOG2482|consensus	423		95.09
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.96
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	94.76
KOG2785|consensus	390		94.17
KOG2482|consensus	423		94.14
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.03
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	93.88
COG5048	467	FOG: Zn-finger [General function prediction only]	93.41
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.35
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	93.29
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.12
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	91.94
KOG2893|consensus	341		91.89
KOG2893|consensus	341		91.62
KOG4173|consensus	253		91.29
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.68
COG4049	65	Uncharacterized protein containing archaeal-type C	89.1
COG4049	65	Uncharacterized protein containing archaeal-type C	88.89
KOG2785|consensus	390		88.55
KOG2186|consensus	276		88.07
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	87.99
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	87.79
KOG4173|consensus	253		87.75
COG1592	166	Rubrerythrin [Energy production and conversion]	87.47
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	87.16
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	86.87
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.65
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	86.55
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	86.08
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.9
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	85.37
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	85.3
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.68
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	84.32
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	83.82
PHA00626	59	hypothetical protein	83.71
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.32
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	82.72
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	82.0
PRK06266	178	transcription initiation factor E subunit alpha; V	81.17
PRK06266	178	transcription initiation factor E subunit alpha; V	81.1
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	80.62
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	80.58
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	80.17
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.1

>KOG2462|consensus

Probab=99.96  E-value=1.4e-30  Score=191.95  Aligned_cols=133  Identities=24%  Similarity=0.504  Sum_probs=102.2

Q ss_pred             cccccccccccCChHHHHHHHHhhc--CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHH
Q psy16829         86 SHVCDICLEAFPSSDDRDLHFLSHL--TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHK  163 (243)
Q Consensus        86 ~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  163 (243)
                      .|+|+.|++.+.+.+.|-+|.+.|-  ...+.+.|.+|++.+.....|+.|+++|.  -+++|.+||+.|+..+.|+.|+
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccc
Confidence            3566666666666666666665551  23456777888888888888888888776  4678888888888888888888


Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHh
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      +.|+|+|||.|+.|++.|.++++|+.|+++|.+.+  +|+|..|+++|...+-|.+|..
T Consensus       208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K--~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK--KHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccccCCCCccCCcccchhcchHHHHHHHHhhcCCc--cccCcchhhHHHHHHHHHHhhh
Confidence            88888888888888888888888888888888887  8888888888888888888864

>KOG2462|consensus

Probab=99.96  E-value=1.5e-29  Score=186.50  Aligned_cols=136  Identities=24%  Similarity=0.424  Sum_probs=128.6

Q ss_pred             CCcceeeccccchhccChhhHHhhhhccCC----CcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHH
Q psy16829         55 DKPLLLTCVECNEDFINVNDFVSHLRGHDS----TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTH  130 (243)
Q Consensus        55 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~  130 (243)
                      .....++|..||+.|.+..+|.+|.++|..    +.+.|+.|++.+.+...|.-|+++| .  -++.|.+||+.|...+.
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH-~--l~c~C~iCGKaFSRPWL  202 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTH-T--LPCECGICGKAFSRPWL  202 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhcc-C--CCcccccccccccchHH
Confidence            355679999999999999999999999976    6799999999999999999999988 2  47999999999999999


Q ss_pred             HHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHH
Q psy16829        131 LKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKA  193 (243)
Q Consensus       131 l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~  193 (243)
                      |+.|+++|.||+||.|+.|++.|.+.++|+.|+++|.+.|+|.|..|++.|...+.|.+|...
T Consensus       203 LQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  203 LQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             hhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999764

>KOG1074|consensus

Probab=99.92  E-value=7.9e-26  Score=188.15  Aligned_cols=80  Identities=30%  Similarity=0.517  Sum_probs=69.8

Q ss_pred             ccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCC----CCeecc---ccccccCChhHHH
Q psy16829        116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA----FPFQCE---ICHKIFTNKSTMW  188 (243)
Q Consensus       116 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~----k~~~C~---~C~~~f~~~~~l~  188 (243)
                      .+|.+|.++..-..+|+-|.++|.+++||+|.+||+.|.++..|+.|+..|-..    -++.|+   +|.+.|...-.|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lp  685 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLP  685 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccccc
Confidence            899999999999999999999999999999999999999999999999877533    235677   7777787777777


Q ss_pred             HHHHHhC
Q psy16829        189 SHKKAHK  195 (243)
Q Consensus       189 ~H~~~h~  195 (243)
                      .|++.|.
T Consensus       686 QhIriH~  692 (958)
T KOG1074|consen  686 QHIRIHL  692 (958)
T ss_pred             ceEEeec
Confidence            7777776

>KOG3608|consensus

Probab=99.92  E-value=5.2e-25  Score=167.04  Aligned_cols=181  Identities=21%  Similarity=0.417  Sum_probs=151.7

Q ss_pred             ccccccCCCCCCCCCcceeeccccchhccChhhHHhhhhccCC---CcccccccccccCChHHHHHHHHhhcCCCCcccC
Q psy16829         42 VQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDS---TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQC  118 (243)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~---~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  118 (243)
                      .+.....++.+.+..++.+.|+.||.-|.++..|..|++.-..   .+|.|..|.+.|.+...|..|+..| .  ..|+|
T Consensus       190 ~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH-v--n~ykC  266 (467)
T KOG3608|consen  190 GNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH-V--NCYKC  266 (467)
T ss_pred             ccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh-h--hcccc
Confidence            3444556677788888999999999999999999999876544   6899999999999999999999887 2  45899


Q ss_pred             CcccccccChHHHHHHHHh-hcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccc--cccccCChhHHHHHHHHhC
Q psy16829        119 NECEFVGKRLTHLKTHKKI-HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       119 ~~C~~~f~~~~~l~~H~~~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~  195 (243)
                      +.|+++....+.|.+|++. |...++|+|..|...|.+.++|.+|...|. +-.|.|..  |.++|.+...|++|.+.++
T Consensus       267 plCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  267 PLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             cccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            9999999999999999885 777889999999999999999999988665 77789977  9999999999999988876


Q ss_pred             -CCCCCCcccccccCccCChHHHHHHHhhcCC
Q psy16829        196 -PEDQIPWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       196 -~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                       |....+|.|..|++.|++-.+|.+|++.-++
T Consensus       346 Eg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  346 EGNNPILYACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             cCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence             5555689999999999999999999865544

>KOG3608|consensus

Probab=99.91  E-value=1.7e-24  Score=164.28  Aligned_cols=177  Identities=23%  Similarity=0.376  Sum_probs=159.0

Q ss_pred             eec--cccchhccChhhHHhhhhccCC-CcccccccccccCChHHHHHHHHhhc-CCCCcccCCcccccccChHHHHHHH
Q psy16829         60 LTC--VECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHL-TSDGLYQCNECEFVGKRLTHLKTHK  135 (243)
Q Consensus        60 ~~C--~~C~~~~~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~  135 (243)
                      +.|  ..|-+.+.++..|+.|+++|.+ +...|+.|+.-|..+..|-.|++... ....+|.|..|.+.|.+...|..|+
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv  257 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHV  257 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHH
Confidence            455  5799999999999999999998 78899999999999999999998653 2455899999999999999999999


Q ss_pred             HhhcCCCCcccccccccccChhHHHHHHHHhc-CCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc--ccCccC
Q psy16829        136 KIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEH-NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYP  212 (243)
Q Consensus       136 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~-~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~  212 (243)
                      ..|..  .|+|+.|.-.....+.|..|++..| .+|||+|..|.+.+.+.+.|.+|+..|. +.  .|.|..  |.++|.
T Consensus       258 ~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~--~y~C~h~~C~~s~r  332 (467)
T KOG3608|consen  258 VRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KT--VYQCEHPDCHYSVR  332 (467)
T ss_pred             HHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-cc--ceecCCCCCcHHHH
Confidence            98864  6899999999999999999998755 7899999999999999999999999988 44  799988  999999


Q ss_pred             ChHHHHHHHhh-cCCCC---CCCCCCCCCccCc
Q psy16829        213 NKRSYKRHKQV-HLGVK---HECEGGPIPALAL  241 (243)
Q Consensus       213 ~~~~l~~H~~~-H~~~~---~~c~~c~~~~~~~  241 (243)
                      +...|++|.+. |.|.+   |.|.-|++.|+++
T Consensus       333 ~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G  365 (467)
T KOG3608|consen  333 TYTQMRRHFLEVHEGNNPILYACHCCDRFFTSG  365 (467)
T ss_pred             HHHHHHHHHHHhccCCCCCceeeecchhhhccc
Confidence            99999999875 44666   9999999999875

>KOG3623|consensus

Probab=99.90  E-value=1.5e-24  Score=178.08  Aligned_cols=69  Identities=28%  Similarity=0.585  Sum_probs=65.1

Q ss_pred             eeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCCCCCccCcC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGPIPALALF  242 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~~~~~~~  242 (243)
                      |.|..|.+.|...++|.+|.-.|+|.+  ||+|.+|.+.|+.+-+|..|+|.|.|++ |.|..|+|.|+..+
T Consensus       895 yaCDqCDK~FqKqSSLaRHKYEHsGqR--PyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSG  964 (1007)
T KOG3623|consen  895 YACDQCDKAFQKQSSLARHKYEHSGQR--PYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSG  964 (1007)
T ss_pred             chHHHHHHHHHhhHHHHHhhhhhcCCC--CcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccccc
Confidence            679999999999999999999999999  9999999999999999999999999999 99999999998764

>KOG3623|consensus

Probab=99.86  E-value=1.4e-22  Score=166.68  Aligned_cols=77  Identities=32%  Similarity=0.773  Sum_probs=75.6

Q ss_pred             cccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHh
Q psy16829        144 VYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      |.|+.|.+.|...+.|.+|.-.|+|.+||+|.+|.+.|..+-.|..|.|.|.|++  ||.|..|+++|....++.+||.
T Consensus       895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEK--PfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEK--PFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             chHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCC--cchhhhhhhhcccccchHhhhc
Confidence            8999999999999999999999999999999999999999999999999999999  9999999999999999999985

>KOG1074|consensus

Probab=99.83  E-value=4.3e-22  Score=166.16  Aligned_cols=51  Identities=25%  Similarity=0.549  Sum_probs=45.1

Q ss_pred             eeeccccchhccChhhHHhhhhccCC-CcccccccccccCChHHHHHHHHhh
Q psy16829         59 LLTCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSH  109 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h  109 (243)
                      +.+|.+|.+.|...+.|+.|++.|++ +||+|.+||..|.++.+|..|...|
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH  404 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRH  404 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeec
Confidence            46799999999999999999999988 8999999999999999998888777

>KOG3576|consensus

Probab=99.74  E-value=8.4e-19  Score=123.74  Aligned_cols=111  Identities=25%  Similarity=0.381  Sum_probs=64.4

Q ss_pred             cccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHH
Q psy16829         86 SHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIK  165 (243)
Q Consensus        86 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  165 (243)
                      .+.|.+|++.|.-...|.+|++.| ...+.|.|..|++.|.+.-+|++|+++|.+.+||+|..|++.|.....|..|.+.
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch-~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~k  195 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCH-SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKK  195 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhc-cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHH
Confidence            355555555555555555555555 4555555555555555555555555555555555555555555555555555554


Q ss_pred             hcC-----------CCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        166 EHN-----------AFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~-----------~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      .|+           +|.|.|..||+.-.....+..|++.|+..
T Consensus       196 vhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  196 VHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            442           45566666666666666666666666543

>KOG3576|consensus

Probab=99.73  E-value=1.4e-18  Score=122.57  Aligned_cols=116  Identities=24%  Similarity=0.472  Sum_probs=104.5

Q ss_pred             CCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHH
Q psy16829        112 SDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHK  191 (243)
Q Consensus       112 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~  191 (243)
                      +...|.|.+|++.|.....|.+|++.|...+.+.|..||+.|.+..+|.+|.++|+|-+||+|..|++.|.+..+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            44569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCC---------CCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        192 KAHKPE---------DQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       192 ~~h~~~---------~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +.-|+.         +.+.|.|+.||.+-.....+..|++.|+..
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            987753         234799999999999999999999988753

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.49  E-value=4e-13  Score=111.59  Aligned_cols=146  Identities=15%  Similarity=0.314  Sum_probs=112.9

Q ss_pred             CcceeeccccchhccChhhHHhhhhccCCCcccccc--cccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHH
Q psy16829         56 KPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDI--CLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKT  133 (243)
Q Consensus        56 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~  133 (243)
                      ......|+.|..... ...|..|........-.|+.  |+..|.. ..          .+..+.|+.|+..|. ...|..
T Consensus       404 ~~~~V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r-~e----------l~~H~~C~~Cgk~f~-~s~Lek  470 (567)
T PLN03086        404 DVDTVECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRV-EE----------AKNHVHCEKCGQAFQ-QGEMEK  470 (567)
T ss_pred             CCCeEECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeec-cc----------cccCccCCCCCCccc-hHHHHH
Confidence            344578999988655 44677887655545567885  9988832 22          233468999999985 677999


Q ss_pred             HHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCC----------hhHHHHHHHHhCCCCCCCcc
Q psy16829        134 HKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTN----------KSTMWSHKKAHKPEDQIPWE  203 (243)
Q Consensus       134 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~----------~~~l~~H~~~h~~~~~~~~~  203 (243)
                      |+..++  .++.|+ |+..+ ....|..|+..+...+++.|+.|++.|..          .+.|..|.... +.+  ++.
T Consensus       471 H~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~r--t~~  543 (567)
T PLN03086        471 HMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSR--TAP  543 (567)
T ss_pred             HHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCc--ceE
Confidence            999875  789999 99755 56899999999999999999999999852          35899998885 777  999


Q ss_pred             cccccCccCChHHHHHHHh
Q psy16829        204 CEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       204 C~~C~~~f~~~~~l~~H~~  222 (243)
                      |..|++.|..+ .|..|+-
T Consensus       544 C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        544 CDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             ccccCCeeeeh-hHHHHHH
Confidence            99999998766 5788864

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.36  E-value=1.6e-12  Score=108.13  Aligned_cols=134  Identities=23%  Similarity=0.437  Sum_probs=104.9

Q ss_pred             ccccccccccCChHHHHHHHHhhcCCCCcccCCc--ccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHH
Q psy16829         87 HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE--CEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKI  164 (243)
Q Consensus        87 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (243)
                      -.|+.|..... ...|..|.... . ...-.|+.  |+..|... .+         +..+.|+.|++.|. ...|..|+.
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~~C-~-r~~V~Cp~~~Cg~v~~r~-el---------~~H~~C~~Cgk~f~-~s~LekH~~  473 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEAYC-S-RHNVVCPHDGCGIVLRVE-EA---------KNHVHCEKCGQAFQ-QGEMEKHMK  473 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHhhC-C-CcceeCCcccccceeecc-cc---------ccCccCCCCCCccc-hHHHHHHHH
Confidence            46999987654 56677888655 2 22345774  88887333 23         33368999999996 678999999


Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccC----------ChHHHHHHHhhcCCCC-CCCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYP----------NKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~----------~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      .+|  +++.|+ ||+.+ .+..|..|+..|.+.+  |+.|+.|++.|.          ..+.|..|+.+. |.+ +.|..
T Consensus       474 ~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~K--pi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~  546 (567)
T PLN03086        474 VFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLR--LITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS  546 (567)
T ss_pred             hcC--CCccCC-CCCCc-chhHHHhhhhccCCCC--ceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence            886  889999 99765 6789999999999998  999999999995          246899999986 777 99999


Q ss_pred             CCCCccCc
Q psy16829        234 GPIPALAL  241 (243)
Q Consensus       234 c~~~~~~~  241 (243)
                      ||+.|..+
T Consensus       547 Cgk~Vrlr  554 (567)
T PLN03086        547 CGRSVMLK  554 (567)
T ss_pred             cCCeeeeh
Confidence            99987643

>PHA00733 hypothetical protein

Probab=99.32  E-value=2e-12  Score=88.20  Aligned_cols=83  Identities=16%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             CCCcccccccccccChhHHHHH--H---HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChH
Q psy16829        141 VYGVYCDVCGRGFHQNNEVTLH--K---IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKR  215 (243)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H--~---~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~  215 (243)
                      .+++.|.+|.+.|.....|..+  +   ...++.+||.|+.|++.|.....|..|++.+  ..  +|.|+.|++.|....
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~--~~~C~~CgK~F~~~~  113 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EH--SKVCPVCGKEFRNTD  113 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--Cc--CccCCCCCCccCCHH
Confidence            4456677776666655555444  1   2334688999999999999999999999876  34  799999999999999


Q ss_pred             HHHHHHhhcCCC
Q psy16829        216 SYKRHKQVHLGV  227 (243)
Q Consensus       216 ~l~~H~~~H~~~  227 (243)
                      .|.+|++..+++
T Consensus       114 sL~~H~~~~h~~  125 (128)
T PHA00733        114 STLDHVCKKHNI  125 (128)
T ss_pred             HHHHHHHHhcCc
Confidence            999999877763

>PHA02768 hypothetical protein; Provisional

Probab=99.19  E-value=1.5e-11  Score=69.22  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCCCCCCCCCCCccCcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALALFE  243 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~c~~c~~~~~~~~~  243 (243)
                      .|+|+.||+.|...++|..|+++|+ ..|.|..|++.|+++++
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~   46 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGE   46 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccce
Confidence            5777778888877777888877777 23777777777776653

>PHA00733 hypothetical protein

Probab=99.14  E-value=5.3e-11  Score=81.22  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             CCcccCCcccccccChHHHHHH--HH---hhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHH
Q psy16829        113 DGLYQCNECEFVGKRLTHLKTH--KK---IHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTM  187 (243)
Q Consensus       113 ~~~~~C~~C~~~f~~~~~l~~H--~~---~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l  187 (243)
                      .+++.|.+|...|.....|..+  +.   .+.+.++|.|+.|++.|.....|..|++.+  ..+|.|+.|++.|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            3445555555555554444443  11   223456677777777777777777776654  3457777777777777777


Q ss_pred             HHHHHHhCC
Q psy16829        188 WSHKKAHKP  196 (243)
Q Consensus       188 ~~H~~~h~~  196 (243)
                      ..|+...|+
T Consensus       116 ~~H~~~~h~  124 (128)
T PHA00733        116 LDHVCKKHN  124 (128)
T ss_pred             HHHHHHhcC
Confidence            777776654

>PHA02768 hypothetical protein; Provisional

Probab=98.99  E-value=1.9e-10  Score=64.79  Aligned_cols=43  Identities=21%  Similarity=0.641  Sum_probs=34.3

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHH
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSY  217 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l  217 (243)
                      .|.|+.||+.|...+.|..|+++|+  +  ||+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k--~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--T--NLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--C--cccCCcccceeccccee
Confidence            3678888888888888888888887  4  78888888888876655

>KOG3993|consensus

Probab=98.91  E-value=3.1e-10  Score=89.32  Aligned_cols=163  Identities=12%  Similarity=0.158  Sum_probs=102.6

Q ss_pred             eeeccccchhccChhhHHhhhhccCC-CcccccccccccCChHHHHHHHHhhcCCCCcccCCcc-cc-cccChHHHHHHH
Q psy16829         59 LLTCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNEC-EF-VGKRLTHLKTHK  135 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C-~~-~f~~~~~l~~H~  135 (243)
                      -|+|.+|...|.+.-.|..|.=.-.- ..|+|+.|+++|....+|-.|.++|-.....-.=..= .+ ........+.-.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            49999999999999999999532222 6899999999999999999999999311111100000 00 000000000000


Q ss_pred             Hh--hcCCCCcccccccccccChhHHHHHHHHhcCC--------------------------------------------
Q psy16829        136 KI--HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA--------------------------------------------  169 (243)
Q Consensus       136 ~~--~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--------------------------------------------  169 (243)
                      +.  ...+..|.|..|++.|....-|+.|+..|+..                                            
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~  426 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG  426 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence            00  11223566666666666666666666555421                                            


Q ss_pred             --CCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhh
Q psy16829        170 --FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       170 --k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                        -...|+.|+..+..+..--.+.+....+.  .|.|.+|.-+|-+.-+|.+|+..
T Consensus       427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q--~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQ--GFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             cccccCCCCCCCCcccCCCCCccccccchhh--ccccccchHhhhcCcchHhHhhh
Confidence              00247778877777655555555555555  79999999999999999999864

>KOG3993|consensus

Probab=98.86  E-value=3.6e-10  Score=88.90  Aligned_cols=155  Identities=15%  Similarity=0.199  Sum_probs=100.6

Q ss_pred             cccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCcc---cccccccccChhHHHHH
Q psy16829         86 SHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVY---CDVCGRGFHQNNEVTLH  162 (243)
Q Consensus        86 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~---C~~C~~~f~~~~~l~~H  162 (243)
                      .|.|++|...|.+...|-+|.-.. .-..-|+|+.|++.|.-..+|..|.+=|.....-.   -+-=.+........+.-
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~R-IV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPR-IVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCe-eEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            388999999999999999997433 22235999999999999999999988764221100   00000000111111110


Q ss_pred             HHH--hcCCCCeeccccccccCChhHHHHHHHHhCCCCC-----------------------------------------
Q psy16829        163 KIK--EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQ-----------------------------------------  199 (243)
Q Consensus       163 ~~~--~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-----------------------------------------  199 (243)
                      .+.  ...+.-|.|..|++.|.....|+.|+.+|+....                                         
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a  425 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVA  425 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeee
Confidence            000  0123469999999999999999999888763210                                         


Q ss_pred             ---CCcccccccCccCChHHHHHHHhhcCCCC-CCCCCCCCCccCc
Q psy16829        200 ---IPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGPIPALAL  241 (243)
Q Consensus       200 ---~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~~~~~~  241 (243)
                         ..-.|+.|+--+.++..=..+.+.-.-+- |.|..|.-.|.+.
T Consensus       426 ~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss  471 (500)
T KOG3993|consen  426 GSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSS  471 (500)
T ss_pred             ccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcC
Confidence               02457778877777766666666544444 8899888888764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.74  E-value=6.9e-09  Score=49.98  Aligned_cols=24  Identities=29%  Similarity=0.791  Sum_probs=14.6

Q ss_pred             HHHHHHHhCCCCCCCcccccccCccC
Q psy16829        187 MWSHKKAHKPEDQIPWECEHCHKVYP  212 (243)
Q Consensus       187 l~~H~~~h~~~~~~~~~C~~C~~~f~  212 (243)
                      |.+|++.|++++  ||.|+.|+++|.
T Consensus         2 l~~H~~~H~~~k--~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEK--PYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSS--SEEESSSSEEES
T ss_pred             HHHHhhhcCCCC--CCCCCCCcCeeC
Confidence            556666666665  666666666654

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.71  E-value=4.3e-09  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             HHHHHHhhcCCCC-CCCCCCCCCccC
Q psy16829        216 SYKRHKQVHLGVK-HECEGGPIPALA  240 (243)
Q Consensus       216 ~l~~H~~~H~~~~-~~c~~c~~~~~~  240 (243)
                      +|.+|+++|+|++ |.|+.|+++|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            5899999999999 999999999974

...

>PHA00616 hypothetical protein

Probab=98.68  E-value=3.7e-09  Score=56.60  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=18.3

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      ||+|+.||+.|...++|.+|++.|+|++ +.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4555555555555555555555555555 54443

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.60  E-value=7.9e-08  Score=55.37  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      .|.||+|++. .+...|..|....|....+.+.||+|...+.  .+|.+|+..+++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            3789999994 5567889998876655444788999988654  489999887653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.56  E-value=3.3e-08  Score=53.00  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=28.1

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCccccccc
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCH  208 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~  208 (243)
                      ||+|+.||+.|...+.|..|++.||+++  |+.|+.=-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~--~~~~~~~y   36 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQN--KLTLEYFY   36 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCC--ccceeEEE
Confidence            5778888888888888888888888887  77776543

>PHA00732 hypothetical protein

Probab=98.45  E-value=1.4e-07  Score=58.47  Aligned_cols=48  Identities=21%  Similarity=0.417  Sum_probs=25.6

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||.|..|++.|.....|..|++.++.    ++.|+.|+++|.   .|..|.+.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----CCccCCCCCEeC---ChhhhhcccC
Confidence            35566666666666666666553221    334666666665   3555554433

>PHA00732 hypothetical protein

Probab=98.44  E-value=1.8e-07  Score=57.92  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             CcccccccCccCChHHHHHHHhh-cCCCCCCCCCCCCCccCc
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQV-HLGVKHECEGGPIPALAL  241 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~c~~c~~~~~~~  241 (243)
                      ||.|+.|++.|.+.++|..|++. |.+  +.|+.||++|.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~--~~C~~CgKsF~~l   40 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL--TKCPVCNKSYRRL   40 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC--CccCCCCCEeCCh
Confidence            68999999999999999999984 664  6899999999865

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.28  E-value=4.5e-07  Score=42.37  Aligned_cols=23  Identities=35%  Similarity=0.793  Sum_probs=16.7

Q ss_pred             cccccccCccCChHHHHHHHhhc
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~H  224 (243)
                      |.|+.|++.|.+..+|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56777777777777777777654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.12  E-value=5.3e-06  Score=47.70  Aligned_cols=49  Identities=24%  Similarity=0.537  Sum_probs=25.1

Q ss_pred             cccccccccccChhHHHHHHHHhcC--CCCeeccccccccCChhHHHHHHHHhC
Q psy16829        144 VYCDVCGRGFHQNNEVTLHKIKEHN--AFPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~~~~--~k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |.|+.|++. .+...|..|....|.  .+.+.||+|...+.  .+|..|+..+|
T Consensus         3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            455666553 334455555554442  23455666655433  25666665544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.03  E-value=3.8e-06  Score=39.49  Aligned_cols=24  Identities=25%  Similarity=0.682  Sum_probs=14.7

Q ss_pred             cccccccCccCChHHHHHHHhhcC
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      |.|++|++.|.+...|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            457777777777777777766553

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.01  E-value=3.5e-06  Score=40.97  Aligned_cols=26  Identities=31%  Similarity=0.841  Sum_probs=20.3

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||.|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57788888888888888888877753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=7.1e-06  Score=38.18  Aligned_cols=23  Identities=39%  Similarity=0.872  Sum_probs=16.8

Q ss_pred             eeccccccccCChhHHHHHHHHh
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56777777777777777777663

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.79  E-value=2.2e-05  Score=36.73  Aligned_cols=24  Identities=46%  Similarity=0.904  Sum_probs=16.7

Q ss_pred             eeccccccccCChhHHHHHHHHhC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |.|++|++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567778888888888888877764

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.72  E-value=2.4e-05  Score=51.34  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             CCcccccccChHHHHHHHHhhc
Q psy16829        118 CNECEFVGKRLTHLKTHKKIHE  139 (243)
Q Consensus       118 C~~C~~~f~~~~~l~~H~~~~~  139 (243)
                      |..|+..|.+...|..|+...+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H   23 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKH   23 (100)
T ss_dssp             ----------------------
T ss_pred             cccccccccccccccccccccc
Confidence            4555555555555555554433

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.69  E-value=3.8e-05  Score=50.34  Aligned_cols=21  Identities=19%  Similarity=0.730  Sum_probs=10.7

Q ss_pred             cccccccCccCChHHHHHHHh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      +.|..|++.|.+...|..|++
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMR   71 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHH
T ss_pred             CCCCccCCCCcCHHHHHHHHc
Confidence            455555555555555555554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.61  E-value=3.4e-05  Score=37.38  Aligned_cols=25  Identities=40%  Similarity=0.909  Sum_probs=19.2

Q ss_pred             CeeccccccccCChhHHHHHHHHhC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ||.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4778888888888888888877665

>smart00355 ZnF_C2H2 zinc finger

Probab=97.59  E-value=6.7e-05  Score=35.72  Aligned_cols=24  Identities=33%  Similarity=0.797  Sum_probs=18.8

Q ss_pred             cccccccCccCChHHHHHHHhhcC
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      |.|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            568888888888888888887664

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.37  E-value=0.00011  Score=34.50  Aligned_cols=23  Identities=35%  Similarity=0.700  Sum_probs=13.9

Q ss_pred             cccccccCccCChHHHHHHHhhcC
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      |.|+.|++... ...|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56777776666 667777766654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.35  E-value=0.00011  Score=40.29  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=13.4

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      |-.|++|+..+.+..+|.+|+.++++
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhc
Confidence            56666666666666666666655544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231|consensus

Probab=97.28  E-value=0.00091  Score=57.51  Aligned_cols=99  Identities=19%  Similarity=0.337  Sum_probs=64.5

Q ss_pred             ccccccccCChHHHHHHHHhhcCCCCcccCCcccc---------cccChHHHHHHHHhh-cCCC----Cccccccccccc
Q psy16829         89 CDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEF---------VGKRLTHLKTHKKIH-EKVY----GVYCDVCGRGFH  154 (243)
Q Consensus        89 C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~---------~f~~~~~l~~H~~~~-~~~~----~~~C~~C~~~f~  154 (243)
                      |..| -.|.....|+.|+...|   +.+.|.+|-.         ...+...|..|++.- .++.    .-.|..|...|.
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl  193 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL  193 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence            4444 33446778888885432   3455555432         334455677777642 1122    246889999999


Q ss_pred             ChhHHHHHHHHhcCCCCeeccccc------cccCChhHHHHHHHHhC
Q psy16829        155 QNNEVTLHKIKEHNAFPFQCEICH------KIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       155 ~~~~l~~H~~~~~~~k~~~C~~C~------~~f~~~~~l~~H~~~h~  195 (243)
                      ....|..|++..|    |.|.+|.      .-|..-..|..|.+.+|
T Consensus       194 d~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  194 DDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            9999999988776    5666663      44677788888888875

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.23  E-value=0.0001  Score=56.71  Aligned_cols=55  Identities=27%  Similarity=0.659  Sum_probs=43.7

Q ss_pred             CCCCeeccc--cccccCChhHHHHHHHHhCC-----------------CCCCCcccccccCccCChHHHHHHHh
Q psy16829        168 NAFPFQCEI--CHKIFTNKSTMWSHKKAHKP-----------------EDQIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       168 ~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~-----------------~~~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      ++|||.|++  |.+.|.+...|.-|+.-.|-                 -+.+||.|+.|+++++....|+-|++
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            358999987  99999999999988775441                 01249999999999999988888865

>KOG2231|consensus

Probab=97.17  E-value=0.00086  Score=57.66  Aligned_cols=121  Identities=24%  Similarity=0.494  Sum_probs=82.1

Q ss_pred             ccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccc---------cccccChh
Q psy16829         87 HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVC---------GRGFHQNN  157 (243)
Q Consensus        87 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C---------~~~f~~~~  157 (243)
                      +.|..|++.|.-.             .....|..| ..|.....|+.|+...++.  +.|..|         .....+..
T Consensus       100 ~~C~~C~~~~~~~-------------~~~~~~~~c-~~~~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Yt~~  163 (669)
T KOG2231|consen  100 HSCHICDRRFRAL-------------YNKKECLHC-TEFKSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLYTRA  163 (669)
T ss_pred             hhcCccccchhhh-------------cccCCCccc-cchhHHHHHHHHHHHhhhh--hccccccccceeeeeeeehehHH
Confidence            6788888876321             112457888 7888999999999764432  234333         22334566


Q ss_pred             HHHHHHHHhcC-CCC----eeccccccccCChhHHHHHHHHhCCCCCCCcccccc------cCccCChHHHHHHHhhcCC
Q psy16829        158 EVTLHKIKEHN-AFP----FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC------HKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       158 ~l~~H~~~~~~-~k~----~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~H~~  226 (243)
                      .|..|+..--. +..    -.|..|...|.....|.+|++.+|      |.|..|      +..|.....|..|-|.+| 
T Consensus       164 el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h------~~chfC~~~~~~neyy~~~~dLe~HfR~~H-  236 (669)
T KOG2231|consen  164 ELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-  236 (669)
T ss_pred             HHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce------eheeecCcccccchhcccchHHHHHhhhcC-
Confidence            77777664321 211    369999999999999999998865      445555      566888889999888777 


Q ss_pred             CCCCCC
Q psy16829        227 VKHECE  232 (243)
Q Consensus       227 ~~~~c~  232 (243)
                        |.|+
T Consensus       237 --flCE  240 (669)
T KOG2231|consen  237 --FLCE  240 (669)
T ss_pred             --cccc
Confidence              5665

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.12  E-value=0.00014  Score=56.01  Aligned_cols=25  Identities=32%  Similarity=0.777  Sum_probs=21.6

Q ss_pred             CCCCeeccccccccCChhHHHHHHH
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKK  192 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~  192 (243)
                      ..|||+|++|++.|.+...|.-|..
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCCceeccccchhhccCccceeccc
Confidence            4699999999999999988887754

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.07  E-value=0.00031  Score=33.20  Aligned_cols=22  Identities=23%  Similarity=0.705  Sum_probs=17.3

Q ss_pred             cccccccCccCChHHHHHHHhh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      |.|.+|+..|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5688888888888888888764

>PRK04860 hypothetical protein; Provisional

Probab=97.03  E-value=0.00032  Score=49.80  Aligned_cols=36  Identities=22%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC-CCCCCCCCCccC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGPIPALA  240 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~~~~~  240 (243)
                      +|.|. |+.   ...++.+|.++|+|++ |.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            56665 664   4555666666666666 666666666543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.00  E-value=0.00046  Score=37.96  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=10.8

Q ss_pred             CcccccccccccCChHHHHHHHHhh
Q psy16829         85 TSHVCDICLEAFPSSDDRDLHFLSH  109 (243)
Q Consensus        85 ~~~~C~~C~~~f~~~~~l~~H~~~h  109 (243)
                      .|.+|+.|+..+....+|++|+...
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~   47 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIR   47 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHH
T ss_pred             CCCCCCcchhhccchhhHHHHHHHH
Confidence            4455555555555555555555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.87  E-value=0.001  Score=31.38  Aligned_cols=24  Identities=33%  Similarity=0.805  Sum_probs=16.0

Q ss_pred             eeccccccccCChhHHHHHHHHhC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |.|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            456777777777777777776543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.87  E-value=0.00081  Score=31.41  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=16.3

Q ss_pred             eeccccccccCChhHHHHHHHHhC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |.|+.|++... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            57888888887 778888887765

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.59  E-value=0.0012  Score=31.16  Aligned_cols=20  Identities=40%  Similarity=0.740  Sum_probs=9.9

Q ss_pred             eccccchhccChhhHHhhhh
Q psy16829         61 TCVECNEDFINVNDFVSHLR   80 (243)
Q Consensus        61 ~C~~C~~~~~~~~~l~~H~~   80 (243)
                      .|.+|++.|.+...|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            44555555555555555544

>PRK04860 hypothetical protein; Provisional

Probab=96.55  E-value=0.0018  Score=46.08  Aligned_cols=39  Identities=26%  Similarity=0.748  Sum_probs=31.2

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCCh
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNK  214 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~  214 (243)
                      -+|.|. |+.   ....+++|.++|.+++  +|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~--~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEA--VYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCc--cEECCCCCceeEEe
Confidence            468887 886   6667888888888888  89998898887643

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.41  E-value=0.00092  Score=32.24  Aligned_cols=22  Identities=23%  Similarity=0.700  Sum_probs=17.6

Q ss_pred             cccccccCccCChHHHHHHHhh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      |-|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.40  E-value=0.0032  Score=29.70  Aligned_cols=21  Identities=19%  Similarity=0.640  Sum_probs=15.5

Q ss_pred             cccccccCccCChHHHHHHHhh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      ..|+.|+++| ..+.|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4688888888 66778888653

>KOG1146|consensus

Probab=96.37  E-value=0.0024  Score=58.46  Aligned_cols=160  Identities=10%  Similarity=0.113  Sum_probs=100.6

Q ss_pred             eeccccchhccChhhHHhhhhccCC--CcccccccccccCChHHHHHHHHhhc------------------------CCC
Q psy16829         60 LTCVECNEDFINVNDFVSHLRGHDS--TSHVCDICLEAFPSSDDRDLHFLSHL------------------------TSD  113 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~~h~~--~~~~C~~C~~~f~~~~~l~~H~~~h~------------------------~~~  113 (243)
                      ..|.-|+..+.....+..|+..-+.  +.++|+.|+..|.....|..|++..|                        .+.
T Consensus       437 ~e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~  516 (1406)
T KOG1146|consen  437 VELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPG  516 (1406)
T ss_pred             ccccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCC
Confidence            4566666666666666666554333  67888888888888888888887632                        234


Q ss_pred             CcccCCcccccccChHHHHHHHHhh--cCC----------C----Cc-cccccccccc--ChhHHHHHHHHhcCCCCeec
Q psy16829        114 GLYQCNECEFVGKRLTHLKTHKKIH--EKV----------Y----GV-YCDVCGRGFH--QNNEVTLHKIKEHNAFPFQC  174 (243)
Q Consensus       114 ~~~~C~~C~~~f~~~~~l~~H~~~~--~~~----------~----~~-~C~~C~~~f~--~~~~l~~H~~~~~~~k~~~C  174 (243)
                      ++|.|..|...+....+|.+|+...  ..+          .    +. .+..+...-.  ..+....    .-..-.|.|
T Consensus       517 ~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~----pktkP~~~C  592 (1406)
T KOG1146|consen  517 KPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSG----PKTKPSWRC  592 (1406)
T ss_pred             CcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCC----CCCCCCcch
Confidence            5688888888888888888887642  111          0    00 0111100000  0000000    001223789


Q ss_pred             cccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhc
Q psy16829        175 EICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       175 ~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H  224 (243)
                      .+|++...-..+|+.|+........ |..|-.++-.+.....+..+.+.+
T Consensus       593 ~vc~yetniarnlrihmtss~~s~~-p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  593 EVCSYETNIARNLRIHMTASPSSSP-PSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             hhhcchhhhhhccccccccCCCCCC-hHHHhhhcchhhccccccCcCCCC
Confidence            9999999888899999887554442 588888888888887777777766

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.26  E-value=0.0024  Score=30.73  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=15.6

Q ss_pred             eeccccchhccChhhHHhhhhc
Q psy16829         60 LTCVECNEDFINVNDFVSHLRG   81 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~~   81 (243)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1146|consensus

Probab=95.50  E-value=0.0019  Score=59.16  Aligned_cols=147  Identities=14%  Similarity=0.205  Sum_probs=90.7

Q ss_pred             ccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcC
Q psy16829         89 CDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHN  168 (243)
Q Consensus        89 C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  168 (243)
                      |..|+..+.+...+--|+..-+...+.++|+.|+..|.....|-.|+++.+.+..-  ..|.. +.....+.+=.....+
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~-gq~~~~~arg~~~~~~  515 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKA-GQNHPRLARGEVYRCP  515 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHhHh-ccccccccccccccCC
Confidence            44555566666666555554335567899999999999999999999974332211  22211 1111111111111225


Q ss_pred             CCCeeccccccccCChhHHHHHHHH--hCCC----------C-----------------------------CCCcccccc
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKA--HKPE----------D-----------------------------QIPWECEHC  207 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~--h~~~----------~-----------------------------~~~~~C~~C  207 (243)
                      .++|.|..|.+.+....+|.+|+..  |..+          .                             .-++.|.+|
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc  595 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVC  595 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhh
Confidence            6788999999999999999999774  2111          0                             005899999


Q ss_pred             cCccCChHHHHHHHh-hcCCCC-CCCCCCCCCc
Q psy16829        208 HKVYPNKRSYKRHKQ-VHLGVK-HECEGGPIPA  238 (243)
Q Consensus       208 ~~~f~~~~~l~~H~~-~H~~~~-~~c~~c~~~~  238 (243)
                      ++.-.-..+|.-|+. .++-.+ -.|-++..++
T Consensus       596 ~yetniarnlrihmtss~~s~~p~~~Lq~~it~  628 (1406)
T KOG1146|consen  596 SYETNIARNLRIHMTASPSSSPPSLVLQQNITS  628 (1406)
T ss_pred             cchhhhhhccccccccCCCCCChHHHhhhcchh
Confidence            999888889999986 333333 4444444444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.32  E-value=0.0029  Score=52.85  Aligned_cols=147  Identities=17%  Similarity=0.198  Sum_probs=86.5

Q ss_pred             cccccccccccCChHHHHHHHH--hhcCCC--CcccCC--cccccccChHHHHHHHHhhcCCCCcccccc--cccccChh
Q psy16829         86 SHVCDICLEAFPSSDDRDLHFL--SHLTSD--GLYQCN--ECEFVGKRLTHLKTHKKIHEKVYGVYCDVC--GRGFHQNN  157 (243)
Q Consensus        86 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C--~~~f~~~~  157 (243)
                      ++.|..|...|.....|.+|..  .| .++  +++.|+  .|++.|.....+..|...+.+..++.+..-  ...+....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNH-SGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             CCCCccccCCcccccccccccccccc-ccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            5667777777777777777777  45 666  777777  677777777777777777766665555332  22222111


Q ss_pred             HHHHHHH-----HhcCCCCeecc--ccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-C
Q psy16829        158 EVTLHKI-----KEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-H  229 (243)
Q Consensus       158 ~l~~H~~-----~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~  229 (243)
                      .-..+..     .......+.+.  .|...+.....+..|...|-......+.+..|...|.....+..|++.|.... .
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence            1000000     11122233332  25555666666666666666555335667778888888888888877776655 3


Q ss_pred             CCCC
Q psy16829        230 ECEG  233 (243)
Q Consensus       230 ~c~~  233 (243)
                      .|..
T Consensus       448 ~~~~  451 (467)
T COG5048         448 LCSI  451 (467)
T ss_pred             eecc
Confidence            3333

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.29  E-value=0.015  Score=29.72  Aligned_cols=22  Identities=18%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      +|.|.+|+..|.+..++..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            6889999999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=95.09  E-value=0.076  Score=41.87  Aligned_cols=50  Identities=18%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             eccccccccCChhHHHHHHHHhCCCC-------------------------CCCcccccccCccCChHHHHHHHh
Q psy16829        173 QCEICHKIFTNKSTMWSHKKAHKPED-------------------------QIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       173 ~C~~C~~~f~~~~~l~~H~~~h~~~~-------------------------~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      .|-.|...+.+...|..|+..-|.-.                         ...-.|-.|...|-....|..|+.
T Consensus       281 ~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  281 VCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             EEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            56666666666666666666543211                         002457778888888888888875

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.96  E-value=0.017  Score=29.25  Aligned_cols=24  Identities=29%  Similarity=1.039  Sum_probs=16.6

Q ss_pred             eeccccccccCChhHHHHHHHHhCCCCCCCcccccccC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK  209 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~  209 (243)
                      |.|.+||+.+....            .  ++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~--~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------A--PWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------C--CCcCcCCCC
Confidence            67888887765432            3  778888874

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=94.76  E-value=0.064  Score=35.69  Aligned_cols=26  Identities=23%  Similarity=0.630  Sum_probs=23.5

Q ss_pred             Cccc----ccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWEC----EHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C----~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      .|.|    ..|++.+.+...+.+|.+.++|
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            4899    9999999999999999998775

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2785|consensus

Probab=94.17  E-value=0.17  Score=40.69  Aligned_cols=52  Identities=17%  Similarity=0.333  Sum_probs=42.9

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCC---------------------CCCccccccc---CccCChHHHHHHHh
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPED---------------------QIPWECEHCH---KVYPNKRSYKRHKQ  222 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~---------------------~~~~~C~~C~---~~f~~~~~l~~H~~  222 (243)
                      |-.|-.|+..+.+...-..|+..+|+--                     .+.|.|-.|+   +.|.+....+.||.
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence            3568889999999888889998888632                     1258899999   99999999999986

>KOG2482|consensus

Probab=94.14  E-value=0.18  Score=39.87  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             CcccCCcccccc-cChHHHHHHHHhhcC----------------------CCCcccccccccccChhHHHHHHHHh
Q psy16829        114 GLYQCNECEFVG-KRLTHLKTHKKIHEK----------------------VYGVYCDVCGRGFHQNNEVTLHKIKE  166 (243)
Q Consensus       114 ~~~~C~~C~~~f-~~~~~l~~H~~~~~~----------------------~~~~~C~~C~~~f~~~~~l~~H~~~~  166 (243)
                      ...+|-.|...+ .+.+....|+-.-++                      -..+.|-.|.+.|..+..|+.||+..
T Consensus       143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhc
Confidence            346788887655 455566666532111                      12478888888898888888888754

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.03  E-value=0.07  Score=42.15  Aligned_cols=130  Identities=22%  Similarity=0.360  Sum_probs=81.4

Q ss_pred             ccccc--cccccCChHHHHHHHHhhcCCCCcccCCcccc---cc------cChHHHHHHHHhhcCCCCc----ccccccc
Q psy16829         87 HVCDI--CLEAFPSSDDRDLHFLSHLTSDGLYQCNECEF---VG------KRLTHLKTHKKIHEKVYGV----YCDVCGR  151 (243)
Q Consensus        87 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~---~f------~~~~~l~~H~~~~~~~~~~----~C~~C~~  151 (243)
                      |.||.  |..+......|..|....|   ..+.|..|..   .|      -+...|..|...-..+..|    .|..|..
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H---~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH---GFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc---CcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            66876  7777777788888887543   2355665533   22      2233466665533222222    5888999


Q ss_pred             cccChhHHHHHHHHhcCCCCeeccccc----cccCChhHHHHHHHHhCCCCCCCccccc--cc----CccCChHHHHHHH
Q psy16829        152 GFHQNNEVTLHKIKEHNAFPFQCEICH----KIFTNKSTMWSHKKAHKPEDQIPWECEH--CH----KVYPNKRSYKRHK  221 (243)
Q Consensus       152 ~f~~~~~l~~H~~~~~~~k~~~C~~C~----~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~----~~f~~~~~l~~H~  221 (243)
                      .|.+...|..|++..|.. -|.|..-+    .-|.+-.+|..|.+.-      -|.|..  |.    ..|.....|+.|+
T Consensus       229 ~FYdDDEL~~HcR~~HE~-ChICD~v~p~~~QYFK~Y~~Le~HF~~~------hy~ct~qtc~~~k~~vf~~~~el~~h~  301 (493)
T COG5236         229 YFYDDDELRRHCRLRHEA-CHICDMVGPIRYQYFKSYEDLEAHFRNA------HYCCTFQTCRVGKCYVFPYHTELLEHL  301 (493)
T ss_pred             eecChHHHHHHHHhhhhh-hhhhhccCccchhhhhCHHHHHHHhhcC------ceEEEEEEEecCcEEEeccHHHHHHHH
Confidence            999999999999987733 23443322    2366667777776542      466643  43    4688999999998


Q ss_pred             hhcCC
Q psy16829        222 QVHLG  226 (243)
Q Consensus       222 ~~H~~  226 (243)
                      ..-+|
T Consensus       302 ~~~h~  306 (493)
T COG5236         302 TRFHK  306 (493)
T ss_pred             HHHhh
Confidence            64443

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=93.88  E-value=0.12  Score=34.42  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=23.4

Q ss_pred             eec----cccccccCChhHHHHHHHHhCC
Q psy16829        172 FQC----EICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       172 ~~C----~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |.|    ..|++.+.+...++.|++.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    9999999999999999999875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.41  E-value=0.02  Score=47.77  Aligned_cols=148  Identities=22%  Similarity=0.323  Sum_probs=101.1

Q ss_pred             ceeeccccchhccChhhHHhhhh--ccCCC---ccccc--ccccccCChHHHHHHHHhhcCCCCcccCCc--ccccccCh
Q psy16829         58 LLLTCVECNEDFINVNDFVSHLR--GHDST---SHVCD--ICLEAFPSSDDRDLHFLSHLTSDGLYQCNE--CEFVGKRL  128 (243)
Q Consensus        58 ~~~~C~~C~~~~~~~~~l~~H~~--~h~~~---~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~  128 (243)
                      ..+.|..|...|.....|.+|.+  .|.+.   ++.|+  .|++.|.+...+.+|...| ....++.+..  +...+...
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  366 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH-TSISPAKEKLLNSSSKFSPL  366 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc-cCCCccccccccCccccccc
Confidence            46899999999999999999999  67654   89999  7999999999999999988 6666666654  33333332


Q ss_pred             HHHHHHHH-----hhcCCCCccc--ccccccccChhHHHHHHHHhcCCC--CeeccccccccCChhHHHHHHHHhCCCCC
Q psy16829        129 THLKTHKK-----IHEKVYGVYC--DVCGRGFHQNNEVTLHKIKEHNAF--PFQCEICHKIFTNKSTMWSHKKAHKPEDQ  199 (243)
Q Consensus       129 ~~l~~H~~-----~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~k--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  199 (243)
                      ..-..+..     .........+  ..|...+.....+..|...+-...  .+.+..|...+.....+..|.+.+.... 
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  445 (467)
T COG5048         367 LNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHA-  445 (467)
T ss_pred             cCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCC-
Confidence            22111111     1112222333  224455666666666666655444  3566789999999999999999988776 


Q ss_pred             CCccccccc
Q psy16829        200 IPWECEHCH  208 (243)
Q Consensus       200 ~~~~C~~C~  208 (243)
                       ++.|..+.
T Consensus       446 -~~~~~~~~  453 (467)
T COG5048         446 -PLLCSILK  453 (467)
T ss_pred             -ceeecccc
Confidence             55554444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.35  E-value=0.057  Score=27.51  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=11.4

Q ss_pred             eeccccchhccChhhHHhhhh
Q psy16829         60 LTCVECNEDFINVNDFVSHLR   80 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~   80 (243)
                      +.|.+|++.|.+...+..|++
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            455555555555555555543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR00622 ssl1 transcription factor ssl1

Probab=93.29  E-value=0.15  Score=33.70  Aligned_cols=54  Identities=20%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             eccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCCCCCCCCC
Q psy16829        173 QCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGP  235 (243)
Q Consensus       173 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~c~~c~  235 (243)
                      .|-.|...|.......  ...-....  .|.|+.|...|-..-..-.|..+|.     |++|.
T Consensus        57 ~C~~C~~~f~~~~~~~--~~~~~~~~--~y~C~~C~~~FC~dCD~fiHe~Lh~-----CPGC~  110 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSP--FDELKDSH--RYVCAVCKNVFCVDCDVFVHESLHC-----CPGCI  110 (112)
T ss_pred             cccCcCCCCCCccccc--cccccccc--ceeCCCCCCccccccchhhhhhccC-----CcCCC
Confidence            3777777776542100  00011122  6888888888888777777766655     77776

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.12  E-value=0.33  Score=32.17  Aligned_cols=48  Identities=17%  Similarity=0.517  Sum_probs=24.5

Q ss_pred             ccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHh
Q psy16829        145 YCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       145 ~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      .|-.|...|........  ........|.|+.|...|-..-++..|...|
T Consensus        57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc
Confidence            36666666654321000  0012234567777777776666666665444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=91.94  E-value=0.087  Score=26.83  Aligned_cols=25  Identities=24%  Similarity=0.676  Sum_probs=16.5

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCcccccccC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK  209 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~  209 (243)
                      .|.|..||+.+....            .  |..|+.|+.
T Consensus         2 ~~~C~~CG~i~~g~~------------~--p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGEE------------A--PEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECCc------------C--CCcCcCCCC
Confidence            377888887765321            2  677888874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893|consensus

Probab=91.89  E-value=0.044  Score=40.91  Aligned_cols=43  Identities=23%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             eccccchhccChhhHHhhhhccCCCcccccccccccCChHHHHHHH
Q psy16829         61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHF  106 (243)
Q Consensus        61 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~  106 (243)
                      .|.+|++.|.....|..|++.   +.|+|.+|.+...+--.|..|.
T Consensus        12 wcwycnrefddekiliqhqka---khfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA---KHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             eeeecccccchhhhhhhhhhh---ccceeeeehhhhccCCCceeeh
Confidence            455555555555555555543   3355555555444444444443

>KOG2893|consensus

Probab=91.62  E-value=0.048  Score=40.70  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=34.1

Q ss_pred             ccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHH
Q psy16829         89 CDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHK  135 (243)
Q Consensus        89 C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~  135 (243)
                      |.+|++.|.+..-|+.|++..     -|+|.+|.+...+--.|..|-
T Consensus        13 cwycnrefddekiliqhqkak-----hfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAK-----HFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             eeecccccchhhhhhhhhhhc-----cceeeeehhhhccCCCceeeh
Confidence            999999999999999997644     499999988766555666663

>KOG4173|consensus

Probab=91.29  E-value=0.15  Score=37.31  Aligned_cols=77  Identities=26%  Similarity=0.470  Sum_probs=58.9

Q ss_pred             eeeccc--cchhccChhhHHhhhhccCCCcccccccccccCChHHHHHHHHhhc---------CCCCcccCCc--ccccc
Q psy16829         59 LLTCVE--CNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHL---------TSDGLYQCNE--CEFVG  125 (243)
Q Consensus        59 ~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~---------~~~~~~~C~~--C~~~f  125 (243)
                      .+.|++  |...|........|-.+-  ....|..|.+.|++.-.|..|+...|         .+...|.|-+  |+..|
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~--h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTL--HGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhc--ccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            377875  677888888788774433  34579999999999999999996543         3466788854  88889


Q ss_pred             cChHHHHHHHHh
Q psy16829        126 KRLTHLKTHKKI  137 (243)
Q Consensus       126 ~~~~~l~~H~~~  137 (243)
                      .+...-+.|+..
T Consensus       157 kT~r~RkdH~I~  168 (253)
T KOG4173|consen  157 KTSRDRKDHMIR  168 (253)
T ss_pred             hhhhhhhhHHHH
Confidence            888888888764

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.68  E-value=0.2  Score=33.19  Aligned_cols=15  Identities=13%  Similarity=0.102  Sum_probs=7.7

Q ss_pred             CcccCCcccccccCh
Q psy16829        114 GLYQCNECEFVGKRL  128 (243)
Q Consensus       114 ~~~~C~~C~~~f~~~  128 (243)
                      .|-.|+.|+..|.-.
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            455555555555443

The function of members of this family is unknown.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.10  E-value=0.16  Score=28.57  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=12.8

Q ss_pred             CcccccccCccCChHHHHHHHhh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      -+.||.|+..|....++.+|+..
T Consensus        17 ~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          17 FLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             eeeCCchhHHHHHhHHHHHHhhH
Confidence            45555555555555555555543

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.89  E-value=0.21  Score=28.09  Aligned_cols=29  Identities=14%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             CCCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |+-.+.|+.|+..|....+..+|...-|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            55667888888888888888888765443

>KOG2785|consensus

Probab=88.55  E-value=0.79  Score=37.02  Aligned_cols=28  Identities=11%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             cceeeccccchhccChhhHHhhhhccCC
Q psy16829         57 PLLLTCVECNEDFINVNDFVSHLRGHDS   84 (243)
Q Consensus        57 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~   84 (243)
                      ..|.-|-+|++.+.+...-..||..+|+
T Consensus       164 ~~Pt~CLfC~~~~k~~e~~~~HM~~~Hg  191 (390)
T KOG2785|consen  164 LIPTDCLFCDKKSKSLEENLKHMFKEHG  191 (390)
T ss_pred             cCCcceeecCCCcccHHHHHHHHhhccC
Confidence            3347899999999999999999998876

>KOG2186|consensus

Probab=88.07  E-value=0.37  Score=36.56  Aligned_cols=47  Identities=19%  Similarity=0.318  Sum_probs=37.5

Q ss_pred             eeeccccchhccChhhHHhhhhccCCCcccccccccccCChHHHHHHHH
Q psy16829         59 LLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFL  107 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~  107 (243)
                      .|.|..||-...-. .+.+|+-.-++.-|.|..|+..|.. .++..|..
T Consensus         3 ~FtCnvCgEsvKKp-~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKKP-QVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhcccc-chHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence            37899999876644 6777988877788999999999987 67777764

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=87.99  E-value=0.48  Score=27.19  Aligned_cols=13  Identities=23%  Similarity=0.583  Sum_probs=5.8

Q ss_pred             CcccccccCccCC
Q psy16829        201 PWECEHCHKVYPN  213 (243)
Q Consensus       201 ~~~C~~C~~~f~~  213 (243)
                      .|.|+.||..-..
T Consensus        27 ~F~CPnCGe~~I~   39 (61)
T COG2888          27 KFPCPNCGEVEIY   39 (61)
T ss_pred             EeeCCCCCceeee
Confidence            3445555444333

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=87.79  E-value=0.35  Score=32.02  Aligned_cols=30  Identities=33%  Similarity=0.770  Sum_probs=24.4

Q ss_pred             eeccccchhccChhhHHhhhhccCCCcccccccccccCCh
Q psy16829         60 LTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSS   99 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~   99 (243)
                      ..|+.||..|...+          ..|-.||.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            58999999998662          2577899999998766

The function of members of this family is unknown.

>KOG4173|consensus

Probab=87.75  E-value=0.53  Score=34.52  Aligned_cols=19  Identities=26%  Similarity=0.697  Sum_probs=8.5

Q ss_pred             cccccccccChhHHHHHHH
Q psy16829        146 CDVCGRGFHQNNEVTLHKI  164 (243)
Q Consensus       146 C~~C~~~f~~~~~l~~H~~  164 (243)
                      |..|.+.|.+.-.|..|+.
T Consensus       109 Cs~C~r~~Pt~hLLd~HI~  127 (253)
T KOG4173|consen  109 CSFCKRAFPTGHLLDAHIL  127 (253)
T ss_pred             hHHHHHhCCchhhhhHHHH
Confidence            4444444444444444433

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=87.47  E-value=0.31  Score=34.86  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=18.2

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCccccccc
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCH  208 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~  208 (243)
                      .|.|++||+.+.             ++.  |-.||+|+
T Consensus       134 ~~vC~vCGy~~~-------------ge~--P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYTHE-------------GEA--PEVCPICG  156 (166)
T ss_pred             EEEcCCCCCccc-------------CCC--CCcCCCCC
Confidence            599999997653             334  89999998

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=87.16  E-value=0.43  Score=22.61  Aligned_cols=8  Identities=38%  Similarity=1.132  Sum_probs=4.5

Q ss_pred             cccccCcc
Q psy16829        204 CEHCHKVY  211 (243)
Q Consensus       204 C~~C~~~f  211 (243)
                      |+.||+.|
T Consensus        17 Cp~CG~~F   24 (26)
T PF10571_consen   17 CPHCGYDF   24 (26)
T ss_pred             CCCCCCCC
Confidence            55555555

Several members are annotated as putative helicases.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=86.87  E-value=0.49  Score=24.56  Aligned_cols=10  Identities=30%  Similarity=1.042  Sum_probs=4.3

Q ss_pred             eecccccccc
Q psy16829        172 FQCEICHKIF  181 (243)
Q Consensus       172 ~~C~~C~~~f  181 (243)
                      .+|+.|+..|
T Consensus        26 vrC~~C~~~f   35 (37)
T PF13719_consen   26 VRCPKCGHVF   35 (37)
T ss_pred             EECCCCCcEe
Confidence            4444444433

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.65  E-value=0.83  Score=36.37  Aligned_cols=75  Identities=27%  Similarity=0.477  Sum_probs=45.4

Q ss_pred             eeccccchhccChhhHHhhhhccCCCcccccccc----cccCChHHHHHHHHhhcCCCCcccCCc--cc----ccccChH
Q psy16829         60 LTCVECNEDFINVNDFVSHLRGHDSTSHVCDICL----EAFPSSDDRDLHFLSHLTSDGLYQCNE--CE----FVGKRLT  129 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~----~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~----~~f~~~~  129 (243)
                      -.|.+|...|..-..|.+|++.-+.+-|.|..=+    .-|....+|.+|.+..|     |.|.+  |.    .+|....
T Consensus       221 P~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~  295 (493)
T COG5236         221 PLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHT  295 (493)
T ss_pred             chhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHH
Confidence            4688888778888888888776554444443221    34666677777765432     55533  32    2567777


Q ss_pred             HHHHHHHhhc
Q psy16829        130 HLKTHKKIHE  139 (243)
Q Consensus       130 ~l~~H~~~~~  139 (243)
                      .|+.|+...+
T Consensus       296 el~~h~~~~h  305 (493)
T COG5236         296 ELLEHLTRFH  305 (493)
T ss_pred             HHHHHHHHHh
Confidence            7777765433

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=86.55  E-value=0.55  Score=24.23  Aligned_cols=11  Identities=18%  Similarity=0.579  Sum_probs=4.8

Q ss_pred             ccccccccccC
Q psy16829        145 YCDVCGRGFHQ  155 (243)
Q Consensus       145 ~C~~C~~~f~~  155 (243)
                      .|+.|+..|.-
T Consensus         4 ~Cp~C~~~y~i   14 (36)
T PF13717_consen    4 TCPNCQAKYEI   14 (36)
T ss_pred             ECCCCCCEEeC
Confidence            34444444433

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=86.08  E-value=0.51  Score=24.53  Aligned_cols=12  Identities=25%  Similarity=0.595  Sum_probs=5.5

Q ss_pred             ccccccccccCh
Q psy16829        145 YCDVCGRGFHQN  156 (243)
Q Consensus       145 ~C~~C~~~f~~~  156 (243)
                      .|+.|+..|.-.
T Consensus         4 ~CP~C~~~~~v~   15 (38)
T TIGR02098         4 QCPNCKTSFRVV   15 (38)
T ss_pred             ECCCCCCEEEeC
Confidence            445555444333

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.90  E-value=0.14  Score=38.56  Aligned_cols=45  Identities=20%  Similarity=0.415  Sum_probs=24.0

Q ss_pred             CCeeccccccccCChhHHHHHHHHh-C---------CCC---CCCcccccccCccCCh
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAH-K---------PED---QIPWECEHCHKVYPNK  214 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h-~---------~~~---~~~~~C~~C~~~f~~~  214 (243)
                      +.+.||+|+..|....-.....+.- .         +..   -....||.||.+|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4456777777776654444333321 1         111   0135688888887643

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=85.37  E-value=0.8  Score=32.73  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             cCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccc
Q psy16829        139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKI  180 (243)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~  180 (243)
                      .....|.|+.|+..|+...++.         ..|.|+.||..
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~  137 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM  137 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence            3445566777766666555442         24667777655

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=85.30  E-value=0.34  Score=36.88  Aligned_cols=79  Identities=15%  Similarity=0.240  Sum_probs=38.9

Q ss_pred             eeccccch-hccChhhHHhhhhccCCCcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhh
Q psy16829         60 LTCVECNE-DFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIH  138 (243)
Q Consensus        60 ~~C~~C~~-~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  138 (243)
                      -+|.+|.. ..-.+..|..|.=.-.-..-.|..|.+...           . .+.+.|.|.+|.... -...-..|+.+-
T Consensus        98 aiCDfCEawvCHgrkCl~~HaC~Cpl~da~C~EC~R~vw-----------~-hGGrif~CsfC~~fl-CEDDQFEHQAsC  164 (314)
T PF06524_consen   98 AICDFCEAWVCHGRKCLSTHACTCPLQDAVCIECERGVW-----------D-HGGRIFKCSFCDNFL-CEDDQFEHQASC  164 (314)
T ss_pred             hhhccchhheeccccccccccccCcCCCcEeeeeecccc-----------c-CCCeEEEeecCCCee-eccchhhhhhhh
Confidence            46777753 233334444443221112335666665431           2 456678888777532 233344555432


Q ss_pred             --cCCCCcccccccc
Q psy16829        139 --EKVYGVYCDVCGR  151 (243)
Q Consensus       139 --~~~~~~~C~~C~~  151 (243)
                        .....|+|..|++
T Consensus       165 QvLe~E~~KC~SCNr  179 (314)
T PF06524_consen  165 QVLESETFKCQSCNR  179 (314)
T ss_pred             hhhhccccccccccc
Confidence              2334567776654

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.68  E-value=1.2  Score=31.85  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             CCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCc
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKV  210 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~  210 (243)
                      +..-|.|+.|+..|+....+.         .  -|.|+.||..
T Consensus       106 ~~~~Y~Cp~c~~r~tf~eA~~---------~--~F~Cp~Cg~~  137 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNEAME---------L--NFTCPRCGAM  137 (158)
T ss_pred             CCCeEECCCCCcEeeHHHHHH---------c--CCcCCCCCCE
Confidence            445567777777776655553         2  4777777754

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=84.32  E-value=0.86  Score=30.78  Aligned_cols=15  Identities=0%  Similarity=-0.589  Sum_probs=7.7

Q ss_pred             CcccCCcccccccCh
Q psy16829        114 GLYQCNECEFVGKRL  128 (243)
Q Consensus       114 ~~~~C~~C~~~f~~~  128 (243)
                      .|-.|+.|+..|...
T Consensus        25 ~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        25 RPAVSPYTGEQFPPE   39 (129)
T ss_pred             CCccCCCcCCccCcc
Confidence            455555555554433

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=83.82  E-value=0.83  Score=24.78  Aligned_cols=11  Identities=18%  Similarity=0.549  Sum_probs=6.0

Q ss_pred             eeccccccccC
Q psy16829        172 FQCEICHKIFT  182 (243)
Q Consensus       172 ~~C~~C~~~f~  182 (243)
                      |.|..||..|.
T Consensus         3 Y~C~~Cg~~~~   13 (44)
T smart00659        3 YICGECGRENE   13 (44)
T ss_pred             EECCCCCCEee
Confidence            55555555554

present in RNA polymerase I, II and III

>PHA00626 hypothetical protein

Probab=83.71  E-value=0.23  Score=28.06  Aligned_cols=12  Identities=17%  Similarity=0.384  Sum_probs=7.4

Q ss_pred             CcccccccCccC
Q psy16829        201 PWECEHCHKVYP  212 (243)
Q Consensus       201 ~~~C~~C~~~f~  212 (243)
                      .|+|+.|++.|+
T Consensus        23 rYkCkdCGY~ft   34 (59)
T PHA00626         23 DYVCCDCGYNDS   34 (59)
T ss_pred             ceEcCCCCCeec
Confidence            566666666664

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.32  E-value=0.36  Score=36.41  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             ceeeccccchhccChhhHHhhhhcc----------CC-C-----cccccccccccCCh
Q psy16829         58 LLLTCVECNEDFINVNDFVSHLRGH----------DS-T-----SHVCDICLEAFPSS   99 (243)
Q Consensus        58 ~~~~C~~C~~~~~~~~~l~~H~~~h----------~~-~-----~~~C~~C~~~f~~~   99 (243)
                      +.+.||+|+..|.+..-+....+.-          .+ .     ...||.||.+|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4579999999998886655555421          11 1     13688898776544

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=82.72  E-value=1.3  Score=20.90  Aligned_cols=20  Identities=15%  Similarity=0.375  Sum_probs=14.1

Q ss_pred             cccccccCccCChHHHHHHHh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      ..||+|++.+ ....+.+|+.
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            3588888887 5567777764

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=82.00  E-value=0.58  Score=24.68  Aligned_cols=31  Identities=19%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             ceeeccccchhccChhhHHhhhhccCCCccccccccc
Q psy16829         58 LLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLE   94 (243)
Q Consensus        58 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~   94 (243)
                      ..|.|..||..|.......      .+....|+.|+.
T Consensus         4 Y~y~C~~Cg~~fe~~~~~~------~~~~~~CP~Cg~   34 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKIS------DDPLATCPECGG   34 (41)
T ss_pred             EEEEcCCCCCEEEEEEecC------CCCCCCCCCCCC
Confidence            3577888887766443221      134556777775

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=81.17  E-value=1.2  Score=32.48  Aligned_cols=33  Identities=18%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             CCCCcccccccccccChhHHHHHHHHhcCCCCeecccccccc
Q psy16829        140 KVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIF  181 (243)
Q Consensus       140 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f  181 (243)
                      ....|.|+.|+..|+....+.         ..|.|+.||...
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L  146 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML  146 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence            344566777766665554431         246677776653

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=81.10  E-value=1.8  Score=31.65  Aligned_cols=34  Identities=29%  Similarity=0.577  Sum_probs=21.6

Q ss_pred             CCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccC
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYP  212 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~  212 (243)
                      ...-|.|+.|+..|+....+.         .  -|.|+.||....
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~--~F~Cp~Cg~~L~  147 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------Y--GFRCPQCGEMLE  147 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------c--CCcCCCCCCCCe
Confidence            345577877877777665442         2  577888876543

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=80.62  E-value=0.97  Score=24.19  Aligned_cols=31  Identities=19%  Similarity=0.463  Sum_probs=18.2

Q ss_pred             ceeeccccchhccChhhHHhhhhccCCCccccccccc
Q psy16829         58 LLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLE   94 (243)
Q Consensus        58 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~   94 (243)
                      ..|.|..||..|.....+..      .....|+.|+.
T Consensus         4 Yey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (42)
T PF09723_consen    4 YEYRCEECGHEFEVLQSISE------DDPVPCPECGS   34 (42)
T ss_pred             EEEEeCCCCCEEEEEEEcCC------CCCCcCCCCCC
Confidence            34777778777665532211      24556777775

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=80.58  E-value=0.69  Score=25.98  Aligned_cols=31  Identities=19%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             ceeeccccchhccChhhHHhhhhccCCCccccccccc
Q psy16829         58 LLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLE   94 (243)
Q Consensus        58 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~   94 (243)
                      ..|.|..||..|.....+.      ....-.|+.|+.
T Consensus         4 Yey~C~~Cg~~fe~~~~~~------~~~~~~CP~Cg~   34 (52)
T TIGR02605         4 YEYRCTACGHRFEVLQKMS------DDPLATCPECGG   34 (52)
T ss_pred             EEEEeCCCCCEeEEEEecC------CCCCCCCCCCCC
Confidence            4577888887776542221      124456888775

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=80.17  E-value=1.2  Score=30.16  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             eeccccchhccChhhHHhhhhccCCCcccccccccccCChHHH
Q psy16829         60 LTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDR  102 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l  102 (243)
                      ..|+.||+.|....          ..|..|+.||..|.....+
T Consensus        10 r~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~~~~~   42 (129)
T TIGR02300        10 RICPNTGSKFYDLN----------RRPAVSPYTGEQFPPEEAL   42 (129)
T ss_pred             ccCCCcCccccccC----------CCCccCCCcCCccCcchhh
Confidence            58999999987652          2578899999988766443

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.10  E-value=1.2  Score=24.03  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=9.7

Q ss_pred             CcccccccCccCCh----HHHHHHH
Q psy16829        201 PWECEHCHKVYPNK----RSYKRHK  221 (243)
Q Consensus       201 ~~~C~~C~~~f~~~----~~l~~H~  221 (243)
                      ...|..|++.+...    ++|.+|+
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhh
Confidence            35566666555542    5666666

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-13
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		3e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		7e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-06
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		5e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		9e-05
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-05
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		5e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		1e-04
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-04
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 61  TCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCN 119
            C EC + F   +    H R H     + C  C ++F    D   H  +H T +  Y+C 
Sbjct: 23  ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEKPYKCP 81
Query: 120 ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHK 179
           EC     +  +L+ H++ H       C  CG+ F Q   +  H+       P++C  C K
Sbjct: 82  ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 180 IFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
            F+ +  + +H++ H  E   P++C  C K +  + +   H++ H G K
Sbjct: 142 SFSREDNLHTHQRTHTGEK--PYKCPECGKSFSRRDALNVHQRTHTGKK 188

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 138 HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE 197
           HE+ Y    + C R F +++E+T H        PFQC IC + F+    + +H + H  E
Sbjct: 1   HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 198 DQIPWECEHCHKVYPNKRSYKRHKQVHL 225
              P+ C+ C + +      KRH ++HL
Sbjct: 61  K--PFACDICGRKFARSDERKRHTKIHL 86

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F +++E+T H        PFQC IC + F+    + +H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +      KRH ++HL  K
Sbjct: 62  --PFACDICGRKFARSDERKRHTKIHLRQK 89

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F +++E+T H        PFQC IC + F+    + +H + H  E 
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHL 225
             P+ C+ C + +      KRH ++HL
Sbjct: 61  --PFACDICGRKFARSDERKRHTKIHL 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F Q+  +T H        PFQC IC + F+    + +H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +      KRH ++HL  K
Sbjct: 62  --PFACDICGRKFARSDERKRHTKIHLRQK 89

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F ++ E+T H        PFQC IC + F+    + +H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +      KRH ++HL  K
Sbjct: 62  --PFACDICGRKFARSDERKRHTKIHLRQK 89

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
           C  CGR F ++  + +H+    +  P+ C+ICHK F  +  +  H+  H  E   P++C+
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK--PFKCQ 77
Query: 206 HCHKVYPNKRSYKRHKQVHL 225
            C K +   R+   HK +H+
Sbjct: 78  ECGKGFCQSRTLAVHKTLHM 97

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F ++ ++T H        PFQC IC + F+    + +H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +      KRH ++HL  K
Sbjct: 62  --PFACDICGRKFARSDERKRHTKIHLRQK 89

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F Q   +  H        PFQC IC + F+ ++++ +H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +    +  RH ++HL  K
Sbjct: 62  --PFACDICGRKFATLHTRTRHTKIHLRQK 89

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F  ++ +T H        PFQC IC + F+    + +H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +      KRH ++HL  K
Sbjct: 62  --PFACDICGRKFARSDERKRHTKIHLRQK 89

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCE 175
           + C  C    KR + L TH  IH       C  CG+ FHQ +++  H        P +C+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 176 ICHKIFTNKSTMWSHKKAH 194
           +C K F+  S + +H + H
Sbjct: 62  VCGKAFSQSSNLITHSRKH 80

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
           C +CG+ F +++ ++ H +   +  P+ C+ C K F  KS M  H   H  E   P +C+
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK--PHKCQ 61
Query: 206 HCHKVYPNKRSYKRHKQVHLG 226
            C K +    +   H + H G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 143 GVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPW 202
           GV C++CG+ F     +  HK+      P+ C +C   F  K  M  H ++H      P+
Sbjct: 7   GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 203 ECEHCHKVYPNKRSYKRH-KQVHLG 226
            C+ C K +        H KQVH G
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVHSG 91

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           E+ Y    + C R F Q   +  H        PFQC IC + F+  + +  H + H  E 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P+ C+ C + +    +  RH ++HL  K
Sbjct: 62  --PFACDICGRKFATLHTRDRHTKIHLRQK 89

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED 198
           EK Y   C  CG+ F Q++ +  H+       P++C  C K F+  S +  H++ H  E 
Sbjct: 2   EKPYK--CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
             P++C  C K +       RH++ H   K
Sbjct: 60  --PYKCPECGKSFSRSDHLSRHQRTHQNKK 87

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 121 CEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICH 178
           C  V  + +HLK H + H  EK Y    + C   F +++E+T H  K   A PFQC +C+
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 179 KIFTNKSTMWSHKKAHK 195
           + F+    +  H K H+
Sbjct: 83  RSFSRSDHLALHMKRHQ 99

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 118 CNECEFVGKRLTHLKTHKKIHEKVYGVYCDV--CGRGFHQNNEVTLHKIKEHNAFPFQCE 175
           CN+  F   +L+HL+ H + H       CD   C R F +++++  H+ +     PFQC+
Sbjct: 14  CNKRYF---KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK 70
Query: 176 ICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
            C + F+    + +H + H  E         C K +       RH  +H
Sbjct: 71  TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 121 CEFVG-----KRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
           C++ G      + +HLK H + H  EK Y    D CG  F +++E+T H  K     PFQ
Sbjct: 9   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 174 CEICHKIFTNKSTMWSHKKAH 194
           C+ C + F+    +  H K H
Sbjct: 69  CQKCDRAFSRSDHLALHMKRH 89

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 121 CEFVG-----KRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
           C++ G      + +HLK H + H  EK Y    D CG  F +++E+T H  K     PFQ
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 174 CEICHKIFTNKSTMWSHKKAH 194
           C+ C + F+    +  H K H
Sbjct: 68  CQKCDRAFSRSDHLALHMKRH 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	9e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	6e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	6e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	9e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-06
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	4e-06
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	5e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-05
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	9e-05
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	8e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)

Query: 61  TCVECNEDFINVNDFVSHLRGHDSTS---HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQ 117
            C EC + F   +    H R H  T    + C  C ++F    D   H  +H T +  Y+
Sbjct: 23  ACPECGKSFSRSDHLAEHQRTH--TGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEKPYK 79

Query: 118 CNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEH 167
           C EC   GK   +  +L+ H++ H  EK Y   C  CG+ F Q   +  H+      K  
Sbjct: 80  CPEC---GKSFSQRANLRAHQRTHTGEKPYA--CPECGKSFSQLAHLRAHQRTHTGEK-- 132

Query: 168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV 227
              P++C  C K F+ +  + +H++ H  E   P++C  C K +  + +   H++ H G 
Sbjct: 133 ---PYKCPECGKSFSREDNLHTHQRTHTGEK--PYKCPECGKSFSRRDALNVHQRTHTGK 187

Query: 228 K 228
           K
Sbjct: 188 K 188

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 52.8 bits (128), Expect = 7e-09
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 17/111 (15%)

Query: 129 THLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIF 181
           +       +   EK Y   C  CG+ F +++ +  H+      K     P++C  C K F
Sbjct: 7   SSSVAQAALEPGEKPYA--CPECGKSFSRSDHLAEHQRTHTGEK-----PYKCPECGKSF 59

Query: 182 TNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
           ++K  +  H++ H  E   P++C  C K +  + + + H++ H G K + C
Sbjct: 60  SDKKDLTRHQRTHTGEK--PYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 59.4 bits (145), Expect = 7e-12
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFT 182
                +     +K +   C  CGR F ++  + +H+      +     P+ C+ICHK F 
Sbjct: 4   GSSGGRLPSKTKKEFI--CKFCGRHFTKSYNLLIHERTHTDER-----PYTCDICHKAFR 56

Query: 183 NKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
            +  +  H+  H  E   P++C+ C K +   R+   HK +H+       
Sbjct: 57  RQDHLRDHRYIHSKEK--PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
           Y C+ C    K   R  HL+ H+ IH  EK +   C  CG+GF Q+  + +HK
Sbjct: 46  YTCDIC---HKAFRRQDHLRDHRYIHSKEKPFK--CQECGKGFCQSRTLAVHK 93

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 58.7 bits (143), Expect = 9e-12
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAF 170
           +QC  C    +   R  HL TH + H  EK +   CD+CGR F +++E   H+    +  
Sbjct: 4   FQCRIC---MRNFSRSDHLTTHIRTHTGEKPFA--CDICGRKFARSDERKRHR-DIQHIL 57

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHK 195
           P   +   ++ +    + +     K
Sbjct: 58  PILEDKVEELLSKNYHLENEVARLK 82

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 37/107 (34%)

Query: 61  TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
            C  C  +F   +   +H+R H                            T +  + C+ 
Sbjct: 5   QCRICMRNFSRSDHLTTHIRTH----------------------------TGEKPFACDI 36

Query: 121 CEFVGK---RLTHLKTHKKIH-EKVYGVYCDVCGRGFHQNNEVTLHK 163
           C   G+   R    K H+ I          D       +N  +    
Sbjct: 37  C---GRKFARSDERKRHRDIQHILPI--LEDKVEELLSKNYHLENEV 78

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHE 230
           PFQC IC + F+    + +H + H  E   P+ C+ C + +      KRH+ +   +   
Sbjct: 3   PFQCRICMRNFSRSDHLTTHIRTHTGEK--PFACDICGRKFARSDERKRHRDIQHILPIL 60

Query: 231 CE 232
            +
Sbjct: 61  ED 62

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 54.7 bits (133), Expect = 2e-10
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 20/89 (22%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----K 165
           + C  C   GK   R + L TH  IH   + Y   C  CG+ FHQ +++  H       K
Sbjct: 2   FDCKIC---GKSFKRSSTLSTHLLIHSDTRPYP--CQYCGKRFHQKSDMKKHTFIHTGEK 56

Query: 166 EHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
                P +C++C K F+  S + +H + H
Sbjct: 57  -----PHKCQVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HE 230
           F C+IC K F   ST+ +H   H      P+ C++C K +  K   K+H  +H G K H+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTR--PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59

Query: 231 CE 232
           C+
Sbjct: 60  CQ 61

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 22/99 (22%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----K 165
           ++C  C   GK   R   LKTH + H   K Y   C  C      ++ +  H       +
Sbjct: 9   HKCEVC---GKCFSRKDKLKTHMRCHTGVKPYK--CKTCDYAAADSSSLNKHLRIHSDER 63

Query: 166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
                PF+C+IC     N S +  H ++H  +       
Sbjct: 64  -----PFKCQICPYASRNSSQLTVHLRSHTGDS--GPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-H 229
           P +CE+C K F+ K  + +H + H      P++C+ C     +  S  +H ++H   +  
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVK--PYKCKTCDYAAADSSSLNKHLRIHSDERPF 65

Query: 230 ECE 232
           +C+
Sbjct: 66  KCQ 68

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.2 bits (128), Expect = 8e-10
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPED-QIPWECEHCHKVYPNKRSYKRHKQV-HLGVK 228
             QCEIC      K+++  H++ H      + + CE C K +    S   H+   H  + 
Sbjct: 7   GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66

Query: 229 HECEGGPIPA 238
              +    P+
Sbjct: 67  LAPQESSGPS 76

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVY---CDVCGRGFHQNNEVTLHKIKEHNAFPF 172
            QC  C F  ++   L  H++ H +        C+ CG+ F + + V  H+ K H A   
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 173 QCE 175
             +
Sbjct: 68  APQ 70

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 54.0 bits (131), Expect = 9e-10
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKE--HN 168
            +C  C    K      +LK H + H  EK +   C  CG+ + +   +  H+ +   + 
Sbjct: 8   VECPTC---HKKFLSKYYLKVHNRKHTGEKPFE--CPKCGKCYFRKENLLEHEARNCMNR 62

Query: 169 A-FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLG 226
           +   F C +C + F  +  +  H  +H  E   P++C  C + +  K+  + H   +H G
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEM--PYKCSSCSQQFMQKKDLQSHMIKLHSG 120

Query: 227 VK 228
             
Sbjct: 121 PS 122

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 61  TCVECNEDFINVNDFVSHLRGHDSTS---HVCDICLEAFPSSDDRDLH---FLSHLTSDG 114
            C  C++ F++      H R H  T      C  C + +   ++   H      +  S+ 
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKH--TGEKPFECPKCGKCYFRKENLLEHEARNCMN-RSEQ 65

Query: 115 LYQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
           ++ C+ C    +   R   L+ H   H  E  Y   C  C + F Q  ++  H IK H
Sbjct: 66  VFTCSVC---QETFRRRMELRLHMVSHTGEMPYK--CSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH---KQVHLGV 227
             +C  CHK F +K  +  H + H  E   P+EC  C K Y  K +   H     ++   
Sbjct: 7   GVECPTCHKKFLSKYYLKVHNRKHTGEK--PFECPKCGKCYFRKENLLEHEARNCMNRSE 64

Query: 228 K-HEC 231
           +   C
Sbjct: 65  QVFTC 69

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 116 YQCN--ECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI---- 164
           Y C+  +C   G    +   L+ H   H  EK +    + C +GF   + +T H +    
Sbjct: 13  YICSFADC---GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69

Query: 165 -KEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWEC--EHCHKVYPNKRSYKR 219
            K      F C+   C   FT K+ M  H           + C  E+C K +      K 
Sbjct: 70  EK-----NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124

Query: 220 HKQVHLGVK-HEC 231
           H+  H     +EC
Sbjct: 125 HQFSHTQQLPYEC 137

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHN-- 168
           + C E E   K    L HL  H   H  EK +    D C   F     +  H  + HN  
Sbjct: 43  FPCKE-EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101

Query: 169 AFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVH 224
              + C    C K F   + +  H+ +H  +   P+EC H  C K +      KRH++VH
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL--PYECPHEGCDKRFSLPSRLKRHEKVH 159

Query: 225 LGVKHE 230
            G   +
Sbjct: 160 AGYPCK 165

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 116 YQCNE--CEFVGKRLTHLKTHKKIH--EKV--YGVYCDVCGRGFHQNNEVTLHKIKEHNA 169
           + C+   C+       ++K H       K+  Y  + + CG+ F ++N++ +H+      
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132

Query: 170 FPFQC--EICHKIFTNKSTMWSHKKAH---KPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
            P++C  E C K F+  S +  H+K H     +      C    K +      K   + H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK--DDSCSFVGKTWTLYL--KHVAECH 188

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH--- 167
             C  C   GK    + HL  HK  H  EK Y   C VCG  F + + ++ H  + H   
Sbjct: 8   VACEIC---GKIFRDVYHLNRHKLSHSGEKPYS--CPVCGLRFKRKDRMSYHV-RSHDGS 61

Query: 168 NAFPFQCEICHKIFTNKSTMWSHKK 192
              P+ C+ C K F+    +  H K
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHIK 86

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 24/123 (19%)

Query: 116 YQCNE--CEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK----- 163
           + C    C    K   +L+HL+ H + H  EK Y      C R F +++++  H+     
Sbjct: 7   FMCAYPGC---NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63

Query: 164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE--HCHKVYPNKRSYKRHK 221
           +K     PFQC+ C + F+    + +H + H  E   P+ C    C K +       RH 
Sbjct: 64  VK-----PFQCKTCQRKFSRSDHLKTHTRTHTGEK--PFSCRWPSCQKKFARSDELVRHH 116

Query: 222 QVH 224
            +H
Sbjct: 117 NMH 119

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 51.0 bits (123), Expect = 6e-09
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIK---EHNAF-PFQCEICHKIFTN 183
              +  + H  EK Y   C  C + F Q   + +H  +    +     F C  C K FT 
Sbjct: 2   SSGSSGRTHTGEKPYA--CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59

Query: 184 KSTMWSHKKAHKPEDQIPWECEHCHK 209
           ++TM  H       D    E E+   
Sbjct: 60  RNTMARHADNCAGPD--GVEGENSGP 83

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQI--PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           P+ C  C K F  K  +  H K +   + +   + C  C K +  + +  RH     G  
Sbjct: 15  PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74

Query: 229 -HECE 232
             E E
Sbjct: 75  GVEGE 79

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 25/154 (16%)

Query: 61  TCVECNEDFINVNDFVSHLRGHDSTSHV-------------CDICLEAFPSSDDRDLHFL 107
               C+++F +       L  H ++ H+             C   L  F +     +H  
Sbjct: 5   RWDGCSQEFDSQ----EQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 108 SHLTSDGLYQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
            H T +  ++C    C     RL +LKTH + H  EK Y    + C + F   ++   H+
Sbjct: 61  RH-TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQ 119

Query: 164 IKEH-NAFPFQCEI--CHKIFTNKSTMWSHKKAH 194
            + H N  P+ C++  C K +T+ S++  H K  
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 33/102 (32%)

Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTM 187
              +  + H  EK                              P++C ICH  FT   TM
Sbjct: 2   SSGSSGRTHSGEK------------------------------PYECYICHARFTQSGTM 31

Query: 188 WSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGVK 228
             H      E+   + C HC  V   K     H ++ H    
Sbjct: 32  KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 12/59 (20%)

Query: 116 YQCNECEFVGKRLT---HLKTHKKIH----EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
           Y+C  C     R T    +K H           +  +C  C     + +++ +H  K+H
Sbjct: 16  YECYIC---HARFTQSGTMKMHILQKHTENVAKF--HCPHCDTVIARKSDLGVHLRKQH 69

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
                C     + +HLK H + H  EK Y    D CG  F +++E+T H  K     PFQ
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67

Query: 174 CEICHKIFTNKSTMWSHKKAH 194
           C+ C + F+    +  H K H
Sbjct: 68  CQKCDRAFSRSDHLALHMKRH 88

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 22/91 (24%)

Query: 116 YQC--NECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI---- 164
           Y C    C    +   +   L  H +IH  +K +   C +C R F +++ +T H      
Sbjct: 5   YACPVESC---DRRFSQSGSLTRHIRIHTGQKPFQ--CRICMRNFSRSDHLTTHIRTHTG 59

Query: 165 -KEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
            K     PF C+IC + F        H K H
Sbjct: 60  EK-----PFACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFTNKSTMWSHKKA 193
           E+ Y    + C R F Q+  +T H       K     PFQC IC + F+    + +H + 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56

Query: 194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           H  E   P+ C+ C + +      KRH ++HL  K
Sbjct: 57  HTGEK--PFACDICGRKFARSDERKRHTKIHLRQK 89

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 7/101 (6%)

Query: 125 GKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLH-KIKEHNAF----PFQCEICHK 179
           G   +  K +  I        C  C   +    E+T+H     H                
Sbjct: 1   GSSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60

Query: 180 IFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH 220
               K ++   +     +     +C +C   + + +    H
Sbjct: 61  SKPRKRSLLEMEGKEDAQK--VLKCMYCGHSFESLQDLSVH 99

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 47.1 bits (113), Expect = 9e-08
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 17/77 (22%)

Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFT 182
           H   H  +   +K Y   CD C   F     +  HK      K     P++C IC   F 
Sbjct: 4   HHHHHSHMTHSDKPYK--CDRCQASFRYKGNLASHKTVHTGEK-----PYRCNICGAQFN 56

Query: 183 NKSTMWSHKKAH---KP 196
             + + +H + H   KP
Sbjct: 57  RPANLKTHTRIHSGEKP 73

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 18/133 (13%)

Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYGVY-------CDVCGRGFHQNNEVTLHKIKE 166
                C+     +  L TH  +                 C   G+ F    ++  H I+ 
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRV 84

Query: 167 H-NAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHK 221
           H    PF C    C KIF     +  HK+ H  E   P++CE   C + + N    K+H 
Sbjct: 85  HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK--PFKCEFEGCDRRFANSSDRKKHM 142

Query: 222 QVHLGVK-HECEG 233
            VH   K     G
Sbjct: 143 HVHTSDKSGPSSG 155

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 120 ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ------ 173
                G+ +    + K I E         C R F   +E+  H   EH   P Q      
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 174 ---CEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK 228
              C    K F  K  + +H + H  E   P+ C    C K++    + K HK+ H G K
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGEK--PFPCPFPGCGKIFARSENLKIHKRTHTGEK 119

Query: 229 -HECE 232
             +CE
Sbjct: 120 PFKCE 124

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 61  TCVECNEDFINVNDFVSHLRGH----------DSTSHVCDICLEAFPSSDDRDLHFLSHL 110
               C+  F  +++ V+H+                   C    ++F +      H   H 
Sbjct: 27  PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH- 85

Query: 111 TSDGLYQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
           T +  + C    C  +  R  +LK HK+ H  EK +    + C R F  +++   H 
Sbjct: 86  TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 67/218 (30%)

Query: 11  VLDTV-------------KLMI--RFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGED 55
           VL  V             K+++  RFK +      + L+  + +              E 
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEV 303

Query: 56  KPLLLTCVECNE-----------------------DFINVNDFVSHLRGHDSTSHVCDIC 92
           K LLL  ++C                         D +   D   H+   D  + + +  
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESS 362

Query: 93  LEAFPSSDDRDLH-----F----------LSHLTSDGLYQCNE---CEFVGKRLTHLKTH 134
           L     ++ R +      F          LS +  D +         +     L   K  
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQP 421

Query: 135 KKIHEKVYGVYCDVCGRGFHQNNEVTLHK-IKEHNAFP 171
           K+    +  +Y ++        NE  LH+ I +H   P
Sbjct: 422 KESTISIPSIYLELKV---KLENEYALHRSIVDHYNIP 456

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%)

Query: 126 KRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKS 185
             + +L  +     + Y    + C R F +++E+T H        PFQC IC + F+   
Sbjct: 4   HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63

Query: 186 TMWSHKKAH 194
            + +H + H
Sbjct: 64  HLTTHIRTH 72

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 127 RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNK 184
           + +HLK H + H  EK Y    + C   F +++E+T H  K   A PFQC +C++ F+  
Sbjct: 29  KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS 88

Query: 185 STMWSHKKAH 194
             +  H K H
Sbjct: 89  DHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 77  SHLRGHDSTSH------VCDI--CLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRL 128
           SHL+ H  T H       C    C   F  SD+   H+  H T    +QC  C     R 
Sbjct: 31  SHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKH-TGAKPFQCGVCNRSFSRS 88

Query: 129 THLKTHKKIHE 139
            HL  H K H+
Sbjct: 89  DHLALHMKRHQ 99

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 25/104 (24%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK-----IK 165
           Y C +C   GK     +    H  +H   + YG  C VCG+ F   + +  H      IK
Sbjct: 11  YPC-QC---GKSFTHKSQRDRHMSMHLGLRPYG--CGVCGKKFKMKHHLVGHMKIHTGIK 64

Query: 166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK 209
                P++C IC K F  + +   H+          +E     +
Sbjct: 65  -----PYECNICAKRFMWRDSF--HRHVTSCTK--SYEAAKAEQ 99

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 26/83 (31%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLH-------K 163
           Y C  C   GK      HL  H KIH   K Y   C++C + F   +  + H       K
Sbjct: 38  YGCGVC---GKKFKMKHHLVGHMKIHTGIKPYE--CNICAKRFMWRD--SFHRHVTSCTK 90

Query: 164 IKEHNAFPFQCEICHKIFTNKST 186
                   ++     +  T  S 
Sbjct: 91  -------SYEAAKAEQNTTEASG 106

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%)

Query: 136 KIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFTNKSTMW 188
                +K+Y   C  CG+ F   ++   H       +     P+ C +C K F  K  + 
Sbjct: 3   SGSSGDKLYP--CQ-CGKSFTHKSQRDRHMSMHLGLR-----PYGCGVCGKKFKMKHHLV 54

Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
            H K H      P+EC  C K +  + S+  H+ V    K +E 
Sbjct: 55  GHMKIHTGIK--PYECNICAKRFMWRDSF--HRHVTSCTKSYEA 94

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 54  EDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSD 113
           E + +      C + F + +    HL  H    HVC  C +AF  S     H L H T +
Sbjct: 2   EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVH-TGE 60

Query: 114 GLYQCN--ECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
             +QC    C   GK      +L+TH +IH  ++ Y    D C + F Q+  +  H 
Sbjct: 61  KPFQCTFEGC---GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 27/128 (21%)

Query: 116 YQC--NECEFVGK---RLTHLKTHKKIH-EKVYGVYCDVCGRGFHQNNEVTLHKI----- 164
             C    C    K     + ++ H   H  +V+   C  CG+ F +++++  H++     
Sbjct: 6   IACPHKGC---TKMFRDNSAMRKHLHTHGPRVHV--CAECGKAFVESSKLKRHQLVHTGE 60

Query: 165 KEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRH 220
           K     PFQC    C K F+    + +H + H  +   P+ C    C+K +    + K H
Sbjct: 61  K-----PFQCTFEGCGKRFSLDFNLRTHVRIHTGDR--PYVCPFDGCNKKFAQSTNLKSH 113

Query: 221 KQVHLGVK 228
              H   K
Sbjct: 114 ILTHAKAK 121

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 137 IHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKP 196
           +  +        C + F  N+ +  H    H      C  C K F   S +  H+  H  
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTG 59

Query: 197 EDQIPWEC--EHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
           E   P++C  E C K +    + + H ++H G + + C
Sbjct: 60  EK--PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 44.0 bits (105), Expect = 8e-07
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
           + C  C    +   R  HLK H + H  EK Y   C +C R F + + +  H  K H
Sbjct: 3   FVCEVC---TRAFARQEHLKRHYRSHTNEKPYP--CGLCNRAFTRRDLLIRHAQKIH 54

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 10/57 (17%), Positives = 25/57 (43%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV 227
            ++C++C +++T+ S    H       +   + C  C K +  K +   H ++   +
Sbjct: 10  TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEH--NAFPFQCEICHKIFTNKSTMWSHKKAH 194
           E  Y   C VC R +   +    H +  H  N   + C  C K FT K  M +H K  
Sbjct: 8   EHTYR--CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 108 SHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
           S + +  +YQC  C      L    +H+++        C  C   F        H+ K  
Sbjct: 9   SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSPELKQEHESK-C 65

Query: 168 NAFPFQCEICHKIFTNKSTMWSHKKA 193
                 C  C + F +  ++W H+  
Sbjct: 66  EYKKLTCLECMRTFKSSFSIWRHQVE 91

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
           C +C        E   H+    NA    C  C   F +      H+   + +      C 
Sbjct: 19  CRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKCEYK---KLTCL 73

Query: 206 HCHKVYPNKRSYKRHK 221
            C + + +  S  RH+
Sbjct: 74  ECMRTFKSSFSIWRHQ 89

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 129 THLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKST 186
                 +KIH  ++     C  CG  F + + ++  K          CE C K    ++ 
Sbjct: 4   GSSGKRQKIHLGDRSQK--CSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAA 54

Query: 187 MWSHKKAHKPE 197
           +   +     +
Sbjct: 55  LNKDEGNESGK 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 10/53 (18%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
           Y+C+EC   GK     + L  H++ H  EK Y   CD CG+ F Q + +  H 
Sbjct: 19  YKCDEC---GKSFSHSSDLSKHRRTHTGEKPYK--CDECGKAFIQRSHLIGHH 66

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
            ++C+ C K F++ S +  H++ H  E   P++C+ C K +  +     H +VH G  
Sbjct: 18  RYKCDECGKSFSHSSDLSKHRRTHTGEK--PYKCDECGKAFIQRSHLIGHHRVHTGSG 73

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)

Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
           Y C EC   GK   R + L  H+++H  EK Y   C  CG+ F QN+ +  H+
Sbjct: 15  YGCVEC---GKAFSRSSILVQHQRVHTGEKPYK--CLECGKAFSQNSGLINHQ 62

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 131 LKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMW 188
                 IH  EK YG  C  CG+ F +++ +  H+       P++C  C K F+  S + 
Sbjct: 2   SSGSSGIHSGEKPYG--CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 189 SHKKAH---KP 196
           +H++ H     
Sbjct: 60  NHQRIHTSGPS 70

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           P+ C  C K F+  S +  H++ H  E   P++C  C K +        H+++H    
Sbjct: 14  PYGCVECGKAFSRSSILVQHQRVHTGEK--PYKCLECGKAFSQNSGLINHQRIHTSGP 69

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 115 LYQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAF 170
           +Y C+   C    K+   LK H+  H  +  Y    + C + F   + +  H+       
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 171 PFQCEICHKIFTNKSTMWSHKK 192
             + + C  +    +    H  
Sbjct: 61  CKKDDSCSFVGKTWTLYLKHVA 82

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 138 HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA-FPFQCE--ICHKIFTNKSTMWSHKKAH 194
                      CGR F     +  HK  +H     F C    C K F  K  +  H K H
Sbjct: 4   GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63

Query: 195 KPEDQIPWECEHCHK 209
                  + CE    
Sbjct: 64  SDTR--DYICEFSGP 76

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
            +C+EC +       L+ H++IH  ++ +   C+ C     Q + ++ H 
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFK--CNYCSFDTKQPSNLSKHM 57

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           P +C  C    ++K+ +  H++ H  +   P++C +C        +  +H +   G  
Sbjct: 9   PEKCSECSYSCSSKAALRIHERIHCTDR--PFKCNYCSFDTKQPSNLSKHMKKFHGDM 64

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
           + CE C       S +  H + H      P+ C +C+  +  K +  +H +     K
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVR--PYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHK 163
           Y C EC    K+ + LK H + H  V   +C  C   F     +T H 
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.98
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.85
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.79
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.79
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.78
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.78
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.74
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.74
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.72
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.72
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.71
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.71
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.68
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.68
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.67
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.65
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.65
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.64
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.63
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.62
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.62
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.6
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.6
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.6
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.58
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.57
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.56
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.54
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.52
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.5
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.5
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.49
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.48
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.47
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.46
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.44
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.41
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.38
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.35
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.35
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.34
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.33
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.32
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.28
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.25
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.24
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.24
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.23
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.23
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.23
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.23
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.22
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.2
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.2
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.17
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.16
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.16
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.16
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.15
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.15
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.12
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.11
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.1
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.07
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.07
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.05
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.03
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.01
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.99
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.97
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.96
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.95
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.94
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.92
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.92
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.91
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.84
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.83
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.82
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.82
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.79
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.79
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.68
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.67
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.66
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.66
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.66
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.66
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.65
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.64
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.63
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.62
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.61
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.61
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.6
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.58
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.98
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.56
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.55
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.54
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.54
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.51
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.51
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.5
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.5
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.5
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.85
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.46
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.78
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.38
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.37
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.34
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.33
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.33
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.32
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.3
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.29
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.28
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.28
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.26
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.26
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.26
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.25
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.23
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.52
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.2
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.46
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.15
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.09
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.35
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.9
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.54
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.54
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.13
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.1
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.02
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.92
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.8
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.09
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.81
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.72
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.56
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.95
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.37
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.37
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.72
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	86.6
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.07
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	85.97
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.57
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	85.47
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.87
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	82.95
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.5
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	82.05
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	81.82
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	81.56
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.71
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.5

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=5.3e-41  Score=248.19  Aligned_cols=176  Identities=25%  Similarity=0.546  Sum_probs=148.5

Q ss_pred             CCCCCCCcceeeccccchhccChhhHHhhhhccCC-CcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccCh
Q psy16829         50 YDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRL  128 (243)
Q Consensus        50 ~~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~  128 (243)
                      +.....++++|.|+.|++.|.....|..|++.|.+ ++|.|+.|++.|.....|..|++.| .++++|.|..|++.|...
T Consensus        12 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~   90 (190)
T 2i13_A           12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEKPYKCPECGKSFSQR   90 (190)
T ss_dssp             -------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHH-HCCCCEECTTTCCEESCH
T ss_pred             hhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhc-CCCCCccCcccCCccCCH
Confidence            34455667889999999999999999999999988 8999999999999999999999999 788899999999999999


Q ss_pred             HHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccccc
Q psy16829        129 THLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCH  208 (243)
Q Consensus       129 ~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~  208 (243)
                      ..|..|++.|.++++|.|+.|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|+
T Consensus        91 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~--~~~C~~C~  168 (190)
T 2i13_A           91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK--PYKCPECG  168 (190)
T ss_dssp             HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCC--CEECTTTC
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC--CeECCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998  99999999


Q ss_pred             CccCChHHHHHHHhhcCCCC
Q psy16829        209 KVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       209 ~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +.|.+...|..|+++|+|++
T Consensus       169 ~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          169 KSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             CEESSHHHHHHHHTTC----
T ss_pred             CccCCHHHHHHHHHhcCCCC
Confidence            99999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=4.7e-38  Score=232.36  Aligned_cols=168  Identities=23%  Similarity=0.456  Sum_probs=137.5

Q ss_pred             hhhHHhhhhccCC-CcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCccccccc
Q psy16829         72 VNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCG  150 (243)
Q Consensus        72 ~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~  150 (243)
                      ...|..|++.|.+ ++|.|+.|++.|.....|..|++.| .++++|.|..|++.|.....|..|++.|.++++|.|+.|+
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   84 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH-TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECG   84 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC----CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHc-CCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccC
Confidence            3568889888887 8999999999999999999999998 7888999999999999999999999999999999999999


Q ss_pred             ccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-C
Q psy16829        151 RGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-H  229 (243)
Q Consensus       151 ~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~  229 (243)
                      +.|.....|..|+..|+++++|.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.+.+.|..|+++|++++ |
T Consensus        85 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A           85 KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK--PYKCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCC--CEECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCC--CeECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence            999999999999999999999999999999999999999999999998  9999999999999999999999999999 9


Q ss_pred             CCCCCCCCccCcC
Q psy16829        230 ECEGGPIPALALF  242 (243)
Q Consensus       230 ~c~~c~~~~~~~~  242 (243)
                      .|+.|++.|..++
T Consensus       163 ~C~~C~~~f~~~~  175 (190)
T 2i13_A          163 KCPECGKSFSRRD  175 (190)
T ss_dssp             ECTTTCCEESSHH
T ss_pred             ECCCCCCccCCHH
Confidence            9999999998753

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=5.1e-35  Score=216.09  Aligned_cols=168  Identities=23%  Similarity=0.494  Sum_probs=153.7

Q ss_pred             CCCcceeec--cccchhccChhhHHhhhhccCC-Ccccc--cccccccCChHHHHHHHHhhcCCCCcccCC--ccccccc
Q psy16829         54 EDKPLLLTC--VECNEDFINVNDFVSHLRGHDS-TSHVC--DICLEAFPSSDDRDLHFLSHLTSDGLYQCN--ECEFVGK  126 (243)
Q Consensus        54 ~~~~~~~~C--~~C~~~~~~~~~l~~H~~~h~~-~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~  126 (243)
                      ....++|.|  +.|++.|.....|..|++.|.+ ++|.|  +.|++.|.....|..|++.| .++++|.|.  .|++.|.
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH-TGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTT-TTCCCEECCSSSCCCEES
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHc-cCCCceeCCCCCCCCccC
Confidence            345667999  7899999999999999999987 89999  88999999999999999998 788999999  8999999


Q ss_pred             ChHHHHHHH-Hhh-cCCCCccc--ccccccccChhHHHHHHHHhcCCCCeeccc--cccccCChhHHHHHHHHhCCCCCC
Q psy16829        127 RLTHLKTHK-KIH-EKVYGVYC--DVCGRGFHQNNEVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQI  200 (243)
Q Consensus       127 ~~~~l~~H~-~~~-~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~  200 (243)
                      +...|..|+ +.| .++.+|.|  ..|++.|.....|..|++.|++++||.|+.  |++.|.....|..|+++|++    
T Consensus        86 ~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~----  161 (190)
T 1tf6_A           86 TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----  161 (190)
T ss_dssp             CHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS----
T ss_pred             CHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC----
Confidence            999999999 556 46789999  899999999999999999999999999988  99999999999999999986    


Q ss_pred             Cccccc---ccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEH---CHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~---C~~~f~~~~~l~~H~~~H~~~  227 (243)
                       |.|+.   |++.|.+...|.+|+++|+|+
T Consensus       162 -~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          162 -YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             -CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             -CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence             77999   999999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.98  E-value=5.3e-32  Score=199.89  Aligned_cols=152  Identities=26%  Similarity=0.496  Sum_probs=143.3

Q ss_pred             Ccccc--cccccccCChHHHHHHHHhhcCCCCcccC--CcccccccChHHHHHHHHhhcCCCCcccc--cccccccChhH
Q psy16829         85 TSHVC--DICLEAFPSSDDRDLHFLSHLTSDGLYQC--NECEFVGKRLTHLKTHKKIHEKVYGVYCD--VCGRGFHQNNE  158 (243)
Q Consensus        85 ~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~  158 (243)
                      ++|.|  +.|++.|.....|..|++.| .++++|.|  ..|++.|.....|..|++.|.++++|.|.  .|++.|.+...
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   89 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN   89 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHH-HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhc-CCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHH
Confidence            78999  68999999999999999998 78899999  88999999999999999999999999999  89999999999


Q ss_pred             HHHHHHHhc--CCCCeec--cccccccCChhHHHHHHHHhCCCCCCCccccc--ccCccCChHHHHHHHhhcCCCCCCCC
Q psy16829        159 VTLHKIKEH--NAFPFQC--EICHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVKHECE  232 (243)
Q Consensus       159 l~~H~~~~~--~~k~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~c~  232 (243)
                      |..|+...+  +.++|.|  +.|++.|.....|..|+++|++++  ||.|+.  |+++|.+.+.|.+|+++|+|  |.|+
T Consensus        90 l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~~~C~k~F~~~~~L~~H~~~H~~--~~C~  165 (190)
T 1tf6_A           90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL--PYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCK  165 (190)
T ss_dssp             HHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSC--SSBCCSSSCCCBCSSHHHHHHHHTSSCS--CCCC
T ss_pred             HHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCC--CccCCCCCCCchhcCHHHHHHHHHHhCC--CcCC
Confidence            999994444  6789999  889999999999999999999998  999988  99999999999999999999  8888


Q ss_pred             C---CCCCccCc
Q psy16829        233 G---GPIPALAL  241 (243)
Q Consensus       233 ~---c~~~~~~~  241 (243)
                      .   |++.|.++
T Consensus       166 ~~~~C~~~f~~~  177 (190)
T 1tf6_A          166 KDDSCSFVGKTW  177 (190)
T ss_dssp             STTTCCCCCSCH
T ss_pred             CCCcCCCccccH
Confidence            8   99999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.96  E-value=1.3e-29  Score=180.94  Aligned_cols=138  Identities=25%  Similarity=0.415  Sum_probs=119.4

Q ss_pred             cccccccccccCChHHHHHHHHh---hcCCCCcccCCc-----ccccccChHHHHHHHHhhcCCCCccccc--ccccccC
Q psy16829         86 SHVCDICLEAFPSSDDRDLHFLS---HLTSDGLYQCNE-----CEFVGKRLTHLKTHKKIHEKVYGVYCDV--CGRGFHQ  155 (243)
Q Consensus        86 ~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~~C~~-----C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~  155 (243)
                      ++.|+.|++.|.+...|..|++.   | .+.++|.|.+     |++.|.....|..|++.|.++++|.|++  |++.|..
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h-~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSS-SCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccC-CCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            56677777777777777777763   3 5666777664     3488999999999999999999999985  9999999


Q ss_pred             hhHHHHHHHHhcCCCCeeccc--cccccCChhHHHHHH-HHhCCCCCCCccccc--ccCccCChHHHHHHHhhcCC
Q psy16829        156 NNEVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMWSHK-KAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       156 ~~~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ...|..|++.|+++++|.|++  |++.|.....|..|+ +.|.+++  ||.|+.  |+++|.+.+.|.+|+++|+|
T Consensus        82 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK--PYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCC--CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC--CeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            999999999999999999998  999999999999998 7898888  999988  99999999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=2.3e-28  Score=174.49  Aligned_cols=138  Identities=25%  Similarity=0.447  Sum_probs=128.4

Q ss_pred             ceeeccccchhccChhhHHhhhh---ccCC-Ccccccc-----cccccCChHHHHHHHHhhcCCCCcccCCc--cccccc
Q psy16829         58 LLLTCVECNEDFINVNDFVSHLR---GHDS-TSHVCDI-----CLEAFPSSDDRDLHFLSHLTSDGLYQCNE--CEFVGK  126 (243)
Q Consensus        58 ~~~~C~~C~~~~~~~~~l~~H~~---~h~~-~~~~C~~-----C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~  126 (243)
                      .++.|..|++.|.+...|..|++   .|.+ ++|.|+.     |++.|.....|..|++.| .++++|.|.+  |++.|.
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH-TGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHH-HCCCCCCCCSTTCCCCCS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhc-CCCCCccCCCCCCCCccc
Confidence            46899999999999999999998   5666 7888875     349999999999999999 7889999986  999999


Q ss_pred             ChHHHHHHHHhhcCCCCccccc--ccccccChhHHHHHH-HHhcCCCCeeccc--cccccCChhHHHHHHHHhCC
Q psy16829        127 RLTHLKTHKKIHEKVYGVYCDV--CGRGFHQNNEVTLHK-IKEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       127 ~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~  196 (243)
                      ....|..|++.|.++++|.|++  |++.|.+...|..|+ +.|.++++|.|++  |++.|.....|..|+++|+|
T Consensus        81 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           81 RLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9999999999999999999998  999999999999998 7899999999988  99999999999999999985

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=6e-26  Score=155.80  Aligned_cols=115  Identities=21%  Similarity=0.486  Sum_probs=99.9

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHH---hcCCCCeeccccccccCChhHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIK---EHNAFPFQCEICHKIFTNKSTM  187 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~---~~~~k~~~C~~C~~~f~~~~~l  187 (243)
                      .+.++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|..|+..   +.++++|.|++|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4567788888888888888888888888888888888888888888888888875   4578899999999999999999


Q ss_pred             HHHHHHhCCCCCCCcccccccCccCChHHHHHHHh-hcCCC
Q psy16829        188 WSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLGV  227 (243)
Q Consensus       188 ~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~  227 (243)
                      ..|++.|++++  ||.|++|++.|.+...|.+|++ .|.++
T Consensus        83 ~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           83 RLHMVSHTGEM--PYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHHHHHSSSC--SEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHHHHcCCCC--CccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            99999999988  9999999999999999999987 56664

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.93  E-value=4.8e-26  Score=155.18  Aligned_cols=112  Identities=26%  Similarity=0.624  Sum_probs=104.6

Q ss_pred             CCCCcccCCc--ccccccChHHHHHHHHhhcCCCCcccc--cccccccChhHHHHHHHHhcCCCCeeccccccccCChhH
Q psy16829        111 TSDGLYQCNE--CEFVGKRLTHLKTHKKIHEKVYGVYCD--VCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKST  186 (243)
Q Consensus       111 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~  186 (243)
                      .++++|.|.+  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|+++++|.|++|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4677899987  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCccc--ccccCccCChHHHHHHHhhc
Q psy16829        187 MWSHKKAHKPEDQIPWEC--EHCHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       187 l~~H~~~h~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~H  224 (243)
                      |..|++.|++++  ||.|  +.|++.|.+.+.|.+|+++|
T Consensus        82 l~~H~~~h~~~~--~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           82 LKTHTRTHTGEK--PFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHTCC--CEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCC--CeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999988  9999  89999999999999999987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=8.3e-26  Score=161.18  Aligned_cols=127  Identities=25%  Similarity=0.466  Sum_probs=102.8

Q ss_pred             CcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHH
Q psy16829         85 TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKI  164 (243)
Q Consensus        85 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  164 (243)
                      ..|.|..|++.|.+...|..|++.+|.+..+.....|                    ..|.|.+|++.|.....|..|++
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~--------------------~~~~C~~C~~~f~~~~~l~~H~~   83 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC--------------------YWEECPREGKSFKAKYKLVNHIR   83 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCC--------------------CBTTCTTSSCCCSSHHHHHHHTH
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccc--------------------cccCCCCcccccCCHHHHHHHHH
Confidence            5667777777777777777777663344433222111                    23789999999999999999999


Q ss_pred             HhcCCCCeeccc--cccccCChhHHHHHHHHhCCCCCCCccccc--ccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        165 KEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       165 ~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      .|+++++|.|..  |++.|.....|..|++.|++++  ||.|++  |++.|.+...|.+|+++|+|++ |.|.+
T Consensus        84 ~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~--~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~g  155 (155)
T 2rpc_A           84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK--PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG  155 (155)
T ss_dssp             HHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSC--SBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSCC
T ss_pred             hcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCC--CccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999988  9999999999999999999988  999997  9999999999999999999998 98864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=1.7e-26  Score=159.66  Aligned_cols=102  Identities=26%  Similarity=0.363  Sum_probs=72.4

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH  190 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H  190 (243)
                      .|+++|.|.+|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.|++++||.|++|++.|.....|..|
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H   97 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH   97 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHH
Confidence            66677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhCCCC----CCCcccccccCccC
Q psy16829        191 KKAHKPED----QIPWECEHCHKVYP  212 (243)
Q Consensus       191 ~~~h~~~~----~~~~~C~~C~~~f~  212 (243)
                      +++|++++    .++|+|..|++.|.
T Consensus        98 ~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           98 IKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             HHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             hHHhcCCCCCCCCCCeecCCCCchhh
Confidence            77776543    12466777776665

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=1.1e-25  Score=154.58  Aligned_cols=113  Identities=23%  Similarity=0.513  Sum_probs=93.9

Q ss_pred             CCcccCC--cccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccc--cccccCChhHHH
Q psy16829        113 DGLYQCN--ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMW  188 (243)
Q Consensus       113 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~  188 (243)
                      .++|.|+  .|++.|.+...|..|++.| ++++|.|.+|++.|.....|..|++.|+++++|.|+.  |++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4568887  7888888888888888877 7778888888888888888888888888888999975  999999999999


Q ss_pred             HHHHHhCCCCCCCcccc--cccCccCChHHHHHHHhhcCCCC
Q psy16829        189 SHKKAHKPEDQIPWECE--HCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       189 ~H~~~h~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|++.|++++  ||.|+  .|++.|.+.+.|.+|+++|++++
T Consensus        82 ~H~~~h~~~~--~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           82 THVRIHTGDR--PYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             HHHHHHHCCC--CCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             HHHHHhCCCC--ceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            9999998888  89995  49999999999999999998876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=1.6e-26  Score=159.74  Aligned_cols=103  Identities=18%  Similarity=0.233  Sum_probs=69.8

Q ss_pred             HhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChH
Q psy16829        136 KIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKR  215 (243)
Q Consensus       136 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~  215 (243)
                      ..+.|+++|.|++|++.|.....|..|++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+.|+++|.+.+
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER--RYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCC--CEEESSSCCEESSHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCc--cccCCCCCCCcCCHH
Confidence            345566667777777777777777777777667777777777777777777777777776666  677777777777777


Q ss_pred             HHHHHHhhcCCC------C-CCCCCCCCCccC
Q psy16829        216 SYKRHKQVHLGV------K-HECEGGPIPALA  240 (243)
Q Consensus       216 ~l~~H~~~H~~~------~-~~c~~c~~~~~~  240 (243)
                      .|..|+++|+++      + |.|..|++.|..
T Consensus        93 ~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             HHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             HHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            777777666543      2 566667666654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=9.2e-25  Score=155.77  Aligned_cols=129  Identities=21%  Similarity=0.374  Sum_probs=82.7

Q ss_pred             CCCcceeeccccchhccChhhHHhhhhc-cCC-CcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHH
Q psy16829         54 EDKPLLLTCVECNEDFINVNDFVSHLRG-HDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHL  131 (243)
Q Consensus        54 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~-h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  131 (243)
                      ...+..|.|..|++.|.+...|..|++. |.+ .+....                     ...+|.|..|++.|.....|
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~---------------------~~~~~~C~~C~~~f~~~~~l   78 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH---------------------VCYWEECPREGKSFKAKYKL   78 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSC---------------------CCCBTTCTTSSCCCSSHHHH
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCc---------------------cccccCCCCcccccCCHHHH
Confidence            4456679999999999999999999998 554 221111                     11234555555555555555


Q ss_pred             HHHHHhhcCCCCccccc--ccccccChhHHHHHHHHhcCCCCeeccc--cccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        132 KTHKKIHEKVYGVYCDV--CGRGFHQNNEVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       132 ~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      ..|++.|.++++|.|.+  |++.|.....|..|++.|+++++|.|++  |++.|.....|..|+++|++++  ||.|.
T Consensus        79 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k--~~~c~  154 (155)
T 2rpc_A           79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK--SGPSS  154 (155)
T ss_dssp             HHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC--CSCSC
T ss_pred             HHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC--CCCCC
Confidence            55555555555666655  6666666666666666666666666665  6666666666666666666666  66663

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=6.1e-24  Score=145.74  Aligned_cols=110  Identities=24%  Similarity=0.458  Sum_probs=78.3

Q ss_pred             CcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHh---hcCCCCcccccccccccChhHHHH
Q psy16829         85 TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKI---HEKVYGVYCDVCGRGFHQNNEVTL  161 (243)
Q Consensus        85 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~---~~~~~~~~C~~C~~~f~~~~~l~~  161 (243)
                      ++|.|+.|++.|.....|..|++.| .++++|.|..|++.|.....|..|+..   +.++++|.|++|++.|.....|..
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   84 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL   84 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHH-SSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhC-CCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHH
Confidence            4566666666666666666666665 555566666666666666666666664   356677888888888888888888


Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhC
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |++.|++++||.|++|++.|.....|..|++..+
T Consensus        85 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             HHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             HHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            8888888888888888888888888888887533

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=4.5e-24  Score=145.34  Aligned_cols=109  Identities=27%  Similarity=0.563  Sum_probs=94.4

Q ss_pred             Ccccccc--cccccCChHHHHHHHHhhcCCCCcccCC--cccccccChHHHHHHHHhhcCCCCcccccccccccChhHHH
Q psy16829         85 TSHVCDI--CLEAFPSSDDRDLHFLSHLTSDGLYQCN--ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVT  160 (243)
Q Consensus        85 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~  160 (243)
                      ++|.|..  |++.|.....|..|++.| .++++|.|.  .|++.|.....|..|++.|.++++|.|++|++.|.....|.
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   83 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK   83 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHH-HTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhh-CCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHH
Confidence            6788876  888888888888888887 677788888  68888888888888888888888899999999999999999


Q ss_pred             HHHHHhcCCCCeec--cccccccCChhHHHHHHHHh
Q psy16829        161 LHKIKEHNAFPFQC--EICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       161 ~H~~~~~~~k~~~C--~~C~~~f~~~~~l~~H~~~h  194 (243)
                      .|++.|+++++|.|  +.|++.|.....|..|+++|
T Consensus        84 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99998888899999  78999999999999998875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=3.5e-24  Score=146.98  Aligned_cols=111  Identities=23%  Similarity=0.434  Sum_probs=61.8

Q ss_pred             ccccc--ccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHHHHHHhhcCCCCccccc--ccccccChhHHHH
Q psy16829         86 SHVCD--ICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDV--CGRGFHQNNEVTL  161 (243)
Q Consensus        86 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~  161 (243)
                      +|.|+  .|++.|.+...|..|++.|  +.++|.|..|++.|.....|..|++.|.++++|.|..  |++.|.....|..
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~   82 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT   82 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG--SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHH
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc--CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHH
Confidence            44454  4555555555555555444  3444555555555555555555555555555566653  6666666666666


Q ss_pred             HHHHhcCCCCeecc--ccccccCChhHHHHHHHHhCCCC
Q psy16829        162 HKIKEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       162 H~~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |++.|+++++|.|+  .|++.|.....|..|+++|++++
T Consensus        83 H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             HHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             HHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            66666666666664  36666666666666666666655

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=2.3e-21  Score=129.17  Aligned_cols=91  Identities=26%  Similarity=0.671  Sum_probs=80.3

Q ss_pred             cCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHH
Q psy16829        139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYK  218 (243)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~  218 (243)
                      ..+++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|++++  ||.|++|++.|.+...|.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~   90 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK--PFKCQECGKGFCQSRTLA   90 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCC--TTSCSSSCCCCSSHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCC--CeECCCcCCcccCHHHHH
Confidence            356678899999999888899999988888899999999999999999999999998888  899999999999999999


Q ss_pred             HHHhhcCCCC-CCC
Q psy16829        219 RHKQVHLGVK-HEC  231 (243)
Q Consensus       219 ~H~~~H~~~~-~~c  231 (243)
                      +|+++|++++ |..
T Consensus        91 ~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           91 VHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHTTSCCCCCC
T ss_pred             HHHHHhCCCCCCcC
Confidence            9999999887 653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.4e-21  Score=127.85  Aligned_cols=88  Identities=23%  Similarity=0.501  Sum_probs=79.8

Q ss_pred             cCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHH
Q psy16829        139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYK  218 (243)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~  218 (243)
                      .++++|.|.+|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++++  ||.|++|++.|.+...|.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~   81 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER--PFKCQICPYASRNSSQLT   81 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCC--CEECSSSSCEESSHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCC--CccCCCCCCccCCHHHHH
Confidence            456788999999999999999999998888999999999999999999999999999888  999999999999999999


Q ss_pred             HHHhhcCCCC
Q psy16829        219 RHKQVHLGVK  228 (243)
Q Consensus       219 ~H~~~H~~~~  228 (243)
                      .|+++|++++
T Consensus        82 ~H~~~h~~~~   91 (96)
T 2dmd_A           82 VHLRSHTGDS   91 (96)
T ss_dssp             HHHTTCCSCC
T ss_pred             HHHHHhcCCC
Confidence            9999999876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.85  E-value=1.3e-21  Score=126.42  Aligned_cols=87  Identities=30%  Similarity=0.618  Sum_probs=77.6

Q ss_pred             CCCCcccc--cccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHH
Q psy16829        140 KVYGVYCD--VCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSY  217 (243)
Q Consensus       140 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l  217 (243)
                      ++++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.+.+.|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l   78 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK--PFACDICGRKFARSDER   78 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCC--CEECTTTCCEESSHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCC--CccCCCCCchhCCHHHH
Confidence            35788998  599999999999999999999999999999999999999999999999988  99999999999999999


Q ss_pred             HHHHhhcCCCC
Q psy16829        218 KRHKQVHLGVK  228 (243)
Q Consensus       218 ~~H~~~H~~~~  228 (243)
                      .+|+++|+|++
T Consensus        79 ~~H~~~H~~~k   89 (90)
T 1a1h_A           79 KRHTKIHLRQK   89 (90)
T ss_dssp             HHHHGGGGC--
T ss_pred             HHHHHHhcccC
Confidence            99999998864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.85  E-value=1.9e-21  Score=123.31  Aligned_cols=82  Identities=28%  Similarity=0.675  Sum_probs=75.4

Q ss_pred             CcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHh
Q psy16829        143 GVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      +|.|.+|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.+.+.|.+|++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK--PHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCC--CEECTTTSCEESSHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCC--CCcCCCcchhhCChHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999888  9999999999999999999999


Q ss_pred             hcCC
Q psy16829        223 VHLG  226 (243)
Q Consensus       223 ~H~~  226 (243)
                      +|+|
T Consensus        79 ~H~g   82 (82)
T 2kmk_A           79 KHTG   82 (82)
T ss_dssp             HHC-
T ss_pred             hhCC
Confidence            9975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.9e-20  Score=122.15  Aligned_cols=89  Identities=27%  Similarity=0.585  Sum_probs=79.7

Q ss_pred             cCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHH
Q psy16829        139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYK  218 (243)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~  218 (243)
                      .++++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|+++..+||.|+.|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999987323999999999999999999


Q ss_pred             HHHh-hcCCC
Q psy16829        219 RHKQ-VHLGV  227 (243)
Q Consensus       219 ~H~~-~H~~~  227 (243)
                      .|++ +|.++
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9986 78764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=4.1e-21  Score=128.12  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=75.3

Q ss_pred             HhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChH
Q psy16829        136 KIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKR  215 (243)
Q Consensus       136 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~  215 (243)
                      +.|.++++|.|.+|++.|.....|..|++.|  .++|.|++|++.|.....|..|++ |++++  ||.|++|++.|.+..
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~--~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYK--KLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTG--GGEEGGGTEECSSHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCC--CccCccccchhCCHH
Confidence            4566777888888888888888888888776  467888888888888888888885 88777  888888888888888


Q ss_pred             HHHHHHh-hcCCCC-CCCC
Q psy16829        216 SYKRHKQ-VHLGVK-HECE  232 (243)
Q Consensus       216 ~l~~H~~-~H~~~~-~~c~  232 (243)
                      .|.+|++ +|.+++ |.+.
T Consensus        84 ~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           84 SIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCC
Confidence            8888886 888877 7764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=4.3e-22  Score=134.69  Aligned_cols=102  Identities=12%  Similarity=0.132  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhcCCCCcccccccccccChhHHHHHHHH--hcCCCCee-cccccccc--CChhHHHHHHHHhCCCCCCCcc
Q psy16829        129 THLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIK--EHNAFPFQ-CEICHKIF--TNKSTMWSHKKAHKPEDQIPWE  203 (243)
Q Consensus       129 ~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~k~~~-C~~C~~~f--~~~~~l~~H~~~h~~~~~~~~~  203 (243)
                      ..|..|++.|.++++|.|.+|++.|.....|..|++.  +.+.+++. |++|++.|  .....|..|++.|++++  ||.
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~--~~~   82 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK--VLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCS--SCB
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCc--ceE
Confidence            3456677777778888888888888888888888877  55566554 88898888  88888888988888888  899


Q ss_pred             cccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        204 CEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       204 C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |++|++.|.+.+.|.+|+++|+... ...+
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            9999999999999999988877654 5444

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=5.3e-20  Score=122.48  Aligned_cols=92  Identities=22%  Similarity=0.425  Sum_probs=70.1

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH  190 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H  190 (243)
                      ...++|.|..|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|++.|.....|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            34556777777777777777777777777777777777777777777777777777777788888888888888888888


Q ss_pred             HHHhCCCCCCCccc
Q psy16829        191 KKAHKPEDQIPWEC  204 (243)
Q Consensus       191 ~~~h~~~~~~~~~C  204 (243)
                      ++.|++++  ||.+
T Consensus        93 ~~~H~~~~--~~~~  104 (106)
T 2ee8_A           93 KTLHMQTS--SPTA  104 (106)
T ss_dssp             HHHTTSCC--CCCC
T ss_pred             HHHhCCCC--CCcC
Confidence            88887777  6654

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.82  E-value=1.5e-20  Score=110.64  Aligned_cols=59  Identities=29%  Similarity=0.625  Sum_probs=55.3

Q ss_pred             CCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .+|||.|.+||+.|...+.|..|+++|++++  ||.|++|+++|...++|.+|+++|+|++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ek--p~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYR--PRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCC--CEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCc--CeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            3799999999999999999999999999999  9999999999999999999999999874

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=4e-20  Score=123.94  Aligned_cols=87  Identities=25%  Similarity=0.462  Sum_probs=76.2

Q ss_pred             hhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHH
Q psy16829        137 IHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRS  216 (243)
Q Consensus       137 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~  216 (243)
                      .|.++++|.| .|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|++++  +|.|+.|++.|.....
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK--PYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCC--CEECSSSCCEESCHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCC--CeeCCCCcchhcCHHH
Confidence            4567788888 888888888888888888888889999999999999999999999888888  8999999999999999


Q ss_pred             HHHHHhhcCC
Q psy16829        217 YKRHKQVHLG  226 (243)
Q Consensus       217 l~~H~~~H~~  226 (243)
                      |.+|++.|++
T Consensus        81 l~~H~~~~~~   90 (110)
T 2csh_A           81 FHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHccc
Confidence            9999988764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1e-19  Score=118.85  Aligned_cols=88  Identities=26%  Similarity=0.444  Sum_probs=75.6

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH  190 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H  190 (243)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888889999999999999999999


Q ss_pred             HHHhCCCC
Q psy16829        191 KKAHKPED  198 (243)
Q Consensus       191 ~~~h~~~~  198 (243)
                      ++.|+++.
T Consensus        84 ~~~h~~~~   91 (96)
T 2dmd_A           84 LRSHTGDS   91 (96)
T ss_dssp             HTTCCSCC
T ss_pred             HHHhcCCC
Confidence            88888876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.80  E-value=1.1e-19  Score=115.09  Aligned_cols=82  Identities=29%  Similarity=0.616  Sum_probs=68.0

Q ss_pred             cccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHh
Q psy16829        115 LYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       115 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      ||.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            47788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CC
Q psy16829        195 KP  196 (243)
Q Consensus       195 ~~  196 (243)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=1.1e-19  Score=117.28  Aligned_cols=86  Identities=26%  Similarity=0.517  Sum_probs=71.1

Q ss_pred             CCcccCC--cccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH
Q psy16829        113 DGLYQCN--ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH  190 (243)
Q Consensus       113 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H  190 (243)
                      +++|.|.  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+++++|.|++|++.|.....|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            4678887  48888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhCCCC
Q psy16829        191 KKAHKPED  198 (243)
Q Consensus       191 ~~~h~~~~  198 (243)
                      +++|++++
T Consensus        82 ~~~H~~~k   89 (90)
T 1a1h_A           82 TKIHLRQK   89 (90)
T ss_dssp             HGGGGC--
T ss_pred             HHHhcccC
Confidence            88888764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.79  E-value=4.9e-19  Score=116.43  Aligned_cols=85  Identities=20%  Similarity=0.499  Sum_probs=77.5

Q ss_pred             CCCCccccc--ccccccChhHHHHHHHHhcCCCCeecc--ccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChH
Q psy16829        140 KVYGVYCDV--CGRGFHQNNEVTLHKIKEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKR  215 (243)
Q Consensus       140 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~  215 (243)
                      ..++|.|..  |++.|.....|..|++.|+++++|.|+  .|++.|.....|..|++.|++++  ||.|+.|++.|....
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~   89 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK--PFQCGVCNRSFSRSD   89 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCC--SCBCSSSCCBCSSHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCC--CeECCCCcCccCCHH
Confidence            456788986  999999999999999999999999996  69999999999999999999988  999999999999999


Q ss_pred             HHHHHHhhcCC
Q psy16829        216 SYKRHKQVHLG  226 (243)
Q Consensus       216 ~l~~H~~~H~~  226 (243)
                      .|..|+++|++
T Consensus        90 ~l~~H~~~H~~  100 (100)
T 2ebt_A           90 HLALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence            99999999975

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.4e-19  Score=120.66  Aligned_cols=90  Identities=18%  Similarity=0.402  Sum_probs=68.6

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH  190 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H  190 (243)
                      .++++|.|..|++.|.....|..|++.|.  ++|.|.+|++.|.....|..|+. |+++++|.|.+|++.|.....|..|
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H   88 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRH   88 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHH
Confidence            56667777777777777777777777763  56788888888888888888875 7788888888888888888888888


Q ss_pred             HH-HhCCCCCCCcccc
Q psy16829        191 KK-AHKPEDQIPWECE  205 (243)
Q Consensus       191 ~~-~h~~~~~~~~~C~  205 (243)
                      ++ .|.+++  ||.|.
T Consensus        89 ~~~~H~~~~--~~~~~  102 (107)
T 1wjp_A           89 QVEVHNQNN--MAPTS  102 (107)
T ss_dssp             HHHTSCCCC--CCCCC
T ss_pred             HHHHcCCCC--CCCCC
Confidence            86 676666  77764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.1e-20  Score=127.67  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             HHHHHhhcCCCCcccCCcccccccChHHHHHHHHh--hcCCCCc-ccccccccc--cChhHHHHHHHHhcCCCCeecccc
Q psy16829        103 DLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKI--HEKVYGV-YCDVCGRGF--HQNNEVTLHKIKEHNAFPFQCEIC  177 (243)
Q Consensus       103 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~~-~C~~C~~~f--~~~~~l~~H~~~~~~~k~~~C~~C  177 (243)
                      ..|++.| .++++|.|..|++.|.....|..|++.  +.+.+++ .|.+|++.|  .....|..|++.|++++||.|++|
T Consensus         8 ~~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C   86 (115)
T 2dmi_A            8 KLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYC   86 (115)
T ss_dssp             CCCCCCC-CCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSS
T ss_pred             hhheeee-CCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCC
Confidence            3344443 344444454455555555555555444  3334333 377777766  667777777777777777888888


Q ss_pred             ccccCChhHHHHHHHHhCCCC
Q psy16829        178 HKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       178 ~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      ++.|.....|..|++.|+...
T Consensus        87 ~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           87 GHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCccCCHHHHHHHHHHhCCcc
Confidence            888888888888887777665

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.78  E-value=3.8e-19  Score=114.40  Aligned_cols=83  Identities=19%  Similarity=0.556  Sum_probs=75.0

Q ss_pred             CCCccccc--ccccccChhHHHHHHHHhcCCCCeecc--ccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHH
Q psy16829        141 VYGVYCDV--CGRGFHQNNEVTLHKIKEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRS  216 (243)
Q Consensus       141 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~  216 (243)
                      ..+|.|..  |++.|.....|..|++.|+++++|.|+  .|++.|.....|..|++.|++++  ||.|+.|++.|.+.+.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~   80 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR--PFQCQKCDRAFSRSDH   80 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCC--CEECSSSSCEESSHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCC--CccCCCCCcccCCHHH
Confidence            45788988  999999999999999999899999997  59999999999999999999988  9999999999999999


Q ss_pred             HHHHHhhcC
Q psy16829        217 YKRHKQVHL  225 (243)
Q Consensus       217 l~~H~~~H~  225 (243)
                      |..|+++|.
T Consensus        81 l~~H~~~H~   89 (89)
T 2wbs_A           81 LALHMKRHF   89 (89)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHhhC
Confidence            999999884

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.3e-18  Score=113.25  Aligned_cols=87  Identities=24%  Similarity=0.471  Sum_probs=72.8

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCC--CCeeccccccccCChhHHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA--FPFQCEICHKIFTNKSTMW  188 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--k~~~C~~C~~~f~~~~~l~  188 (243)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|+++  ++|.|++|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888876  8899999999999999999


Q ss_pred             HHHH-HhCCC
Q psy16829        189 SHKK-AHKPE  197 (243)
Q Consensus       189 ~H~~-~h~~~  197 (243)
                      .|++ .|.++
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9986 56544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.2e-18  Score=116.69  Aligned_cols=85  Identities=24%  Similarity=0.493  Sum_probs=72.1

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH  190 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H  190 (243)
                      .++++|.| .|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH   84 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHH
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHH
Confidence            67778888 78888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhCC
Q psy16829        191 KKAHKP  196 (243)
Q Consensus       191 ~~~h~~  196 (243)
                      ++.|+.
T Consensus        85 ~~~~~~   90 (110)
T 2csh_A           85 VTSCTK   90 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            888764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.4e-18  Score=111.05  Aligned_cols=81  Identities=20%  Similarity=0.335  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC--CCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCCC
Q psy16829        159 VTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED--QIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGP  235 (243)
Q Consensus       159 l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~  235 (243)
                      +..|++.|.++++|.|.+|++.|.....|..|++.|+...  .++|.|+.|++.|.....|..|+++|++++ +.|+.|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            4567888889999999999999999999999999887762  128999999999999999999999999998 9999999


Q ss_pred             CCcc
Q psy16829        236 IPAL  239 (243)
Q Consensus       236 ~~~~  239 (243)
                      .+|.
T Consensus        83 ~~~g   86 (86)
T 1x6h_A           83 PSSG   86 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.74  E-value=1.5e-19  Score=116.11  Aligned_cols=82  Identities=17%  Similarity=0.359  Sum_probs=73.8

Q ss_pred             CCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHH
Q psy16829        141 VYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH  220 (243)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H  220 (243)
                      +++|.|.+|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++ .  +|.|+.|++.|.+..+|..|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~--~~~c~~C~~~f~~~~~L~~H   77 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-L--PILEDKVEELLSKNYHLENE   77 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-H--HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-C--cchHHHHHHHHHHHhhhHHH
Confidence            46789999999999999999999999999999999999999999999999999985 4  89999999999999999999


Q ss_pred             HhhcC
Q psy16829        221 KQVHL  225 (243)
Q Consensus       221 ~~~H~  225 (243)
                      ++.++
T Consensus        78 ~~~~h   82 (88)
T 1llm_C           78 VARLK   82 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=7.5e-18  Score=105.78  Aligned_cols=70  Identities=26%  Similarity=0.550  Sum_probs=59.0

Q ss_pred             cCCCCeeccc--cccccCChhHHHHHHH-HhCCCCCCCccccc--ccCccCChHHHHHHHhhcCCCC-CCCCCCCCCc
Q psy16829        167 HNAFPFQCEI--CHKIFTNKSTMWSHKK-AHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK-HECEGGPIPA  238 (243)
Q Consensus       167 ~~~k~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~~~  238 (243)
                      +++++|.|..  |++.|.....|..|++ .|.+++  ||.|+.  |++.|.+...|.+|+++|++++ |.|+.|++.|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK--SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCC--CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCC--CeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            4677888876  8888888888888888 687777  888888  8888888888888888888888 8888888887

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.72  E-value=5.8e-18  Score=99.52  Aligned_cols=59  Identities=22%  Similarity=0.510  Sum_probs=52.5

Q ss_pred             CCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        140 KVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       140 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      .|+||.|.+|++.|.....|..|++.|++++||.|++||+.|...+.|..|+++|+++.
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            36889999999999999999999999999999999999999999999999999998764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=2.1e-17  Score=108.52  Aligned_cols=85  Identities=29%  Similarity=0.538  Sum_probs=67.4

Q ss_pred             CCCcccCCc--ccccccChHHHHHHHHhhcCCCCcccc--cccccccChhHHHHHHHHhcCCCCeeccccccccCChhHH
Q psy16829        112 SDGLYQCNE--CEFVGKRLTHLKTHKKIHEKVYGVYCD--VCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTM  187 (243)
Q Consensus       112 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l  187 (243)
                      ..++|.|..  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|+++++|.|++|++.|.....|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            345677775  788888778888888777777788885  5888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCC
Q psy16829        188 WSHKKAHKP  196 (243)
Q Consensus       188 ~~H~~~h~~  196 (243)
                      ..|+++|++
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            888888763

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.72  E-value=1.1e-17  Score=106.42  Aligned_cols=78  Identities=26%  Similarity=0.601  Sum_probs=68.3

Q ss_pred             Cccc--ccccccccChhHHHHHHHHhcCCCCeeccc--cccccCChhHHHHHHHHhCCCCCCCccccc---ccCccCChH
Q psy16829        143 GVYC--DVCGRGFHQNNEVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH---CHKVYPNKR  215 (243)
Q Consensus       143 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~---C~~~f~~~~  215 (243)
                      ||.|  +.|++.|.....|..|++.|+++++|.|+.  |++.|.....|..|++.|++     |.|+.   |++.|.+.+
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~   75 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWT   75 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHH
Confidence            4778  889999988889999988888889999988  99999999999999988886     78888   999999999


Q ss_pred             HHHHHHhhcC
Q psy16829        216 SYKRHKQVHL  225 (243)
Q Consensus       216 ~l~~H~~~H~  225 (243)
                      .|.+|+++|+
T Consensus        76 ~l~~H~~~hh   85 (85)
T 2j7j_A           76 LYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999988875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.71  E-value=1.7e-17  Score=106.55  Aligned_cols=82  Identities=30%  Similarity=0.557  Sum_probs=68.2

Q ss_pred             CCcccCCc--ccccccChHHHHHHHHhhcCCCCcccc--cccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHH
Q psy16829        113 DGLYQCNE--CEFVGKRLTHLKTHKKIHEKVYGVYCD--VCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMW  188 (243)
Q Consensus       113 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~  188 (243)
                      .++|.|..  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            35677877  888888888888888888888888886  58888888888888888888888888888888888888888


Q ss_pred             HHHHHh
Q psy16829        189 SHKKAH  194 (243)
Q Consensus       189 ~H~~~h  194 (243)
                      .|+++|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            888876

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.71  E-value=3.7e-18  Score=117.58  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             CCCCcccCCcccccccChHHHHHHHHh---hcCCCCccccccccccc------ChhHHHHHHHHhcCCCCeecccccccc
Q psy16829        111 TSDGLYQCNECEFVGKRLTHLKTHKKI---HEKVYGVYCDVCGRGFH------QNNEVTLHKIKEHNAFPFQCEICHKIF  181 (243)
Q Consensus       111 ~~~~~~~C~~C~~~f~~~~~l~~H~~~---~~~~~~~~C~~C~~~f~------~~~~l~~H~~~~~~~k~~~C~~C~~~f  181 (243)
                      .+.++|.|...+.....  .+..+.+.   ....+.+.|.+|.+.|.      ....|..|+ .|++++||.|++|++.|
T Consensus         8 ~~~k~~~~~~k~~~~~~--s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f   84 (129)
T 2wbt_A            8 SGSKKYLSNHKGIFIHV--TLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPF   84 (129)
T ss_dssp             TTCCGGGGCSSCEEEEC--CHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEE
T ss_pred             ccccccccccCCeeeee--cHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCccc
Confidence            56667766654433221  12233221   22344567777766554      556667776 68899999999999999


Q ss_pred             CChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        182 TNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       182 ~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      .....|..|+++|  ++  ||.|+.|++.|...++|.+|+++|+|+
T Consensus        85 ~~~~~l~~H~~~H--~~--~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           85 SSSVSLKQHIRYT--EH--TKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SSHHHHHHHHHHT--CC--CCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCHhHHHHHHHHC--CC--CCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9999999999998  66  999999999999999999999999985

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=4.1e-17  Score=106.04  Aligned_cols=78  Identities=13%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             ccccChhHHHHHHHHhcCCCCeecccccccc-CChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHH-HhhcCCCC
Q psy16829        151 RGFHQNNEVTLHKIKEHNAFPFQCEICHKIF-TNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGVK  228 (243)
Q Consensus       151 ~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~  228 (243)
                      ..|.....+..|+..++++++|.|+.|++.| .....|..|++.| +++  ||.|.+|++.|...+.|..| +++|+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k--~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQE--MFTCHHCGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCC--CCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCC--CeECCCCCCeeCCHHHHHHHhHHhcCCCC
Confidence            4567778888999999999999999999999 9999999999999 887  99999999999999999999 89999877


Q ss_pred             -CCC
Q psy16829        229 -HEC  231 (243)
Q Consensus       229 -~~c  231 (243)
                       |.+
T Consensus        91 ~~~~   94 (96)
T 2ctd_A           91 SGPS   94 (96)
T ss_dssp             SCSC
T ss_pred             CCCC
Confidence             544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=4.2e-17  Score=101.79  Aligned_cols=65  Identities=25%  Similarity=0.635  Sum_probs=56.7

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      .+.++++|.|++|++.|.....|..|++.|++++  ||.|++|++.|.....|.+|+++|++++ |.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK--PYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSC--SEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCc--CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3456788999999999999999999999988887  8999999999999999999999999888 877

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=2.4e-17  Score=107.82  Aligned_cols=78  Identities=15%  Similarity=0.284  Sum_probs=68.0

Q ss_pred             cccChhHHHHHHHHhcCCCCeeccccccccC-ChhHHHHHHHHhCC-CCCCCcccccccCccCChHHHHHHHhhcCCCC-
Q psy16829        152 GFHQNNEVTLHKIKEHNAFPFQCEICHKIFT-NKSTMWSHKKAHKP-EDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-  228 (243)
Q Consensus       152 ~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-  228 (243)
                      .+.....+..|++.|.++++|.|.+|++.|. ....|..|++.|++ ++  ||.|++|++.|.+...|.+|+++|++++ 
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~--~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD--ALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHH--HHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCC--CEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3555667778999999999999999999999 99999999999988 77  9999999999999999999999999887 


Q ss_pred             CCC
Q psy16829        229 HEC  231 (243)
Q Consensus       229 ~~c  231 (243)
                      ...
T Consensus        83 ~~~   85 (98)
T 2gqj_A           83 SDA   85 (98)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.67  E-value=7.3e-18  Score=108.14  Aligned_cols=81  Identities=25%  Similarity=0.421  Sum_probs=56.7

Q ss_pred             CcccCCcccccccChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHH
Q psy16829        114 GLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKA  193 (243)
Q Consensus       114 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~  193 (243)
                      +||.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|..|+..+++ .+|.|+.|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            4666777777777777777777777667777777777777777777777766663 567777777777777777777766


Q ss_pred             hC
Q psy16829        194 HK  195 (243)
Q Consensus       194 h~  195 (243)
                      ++
T Consensus        81 ~h   82 (88)
T 1llm_C           81 LK   82 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1e-16  Score=100.48  Aligned_cols=71  Identities=28%  Similarity=0.478  Sum_probs=58.0

Q ss_pred             CCCCccccc--ccccccChhHHHHHHH-HhcCCCCeeccc--cccccCChhHHHHHHHHhCCCCCCCcccccccCccC
Q psy16829        140 KVYGVYCDV--CGRGFHQNNEVTLHKI-KEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYP  212 (243)
Q Consensus       140 ~~~~~~C~~--C~~~f~~~~~l~~H~~-~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~  212 (243)
                      ++++|.|..  |++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|+++|++++  ||.|++|+++|.
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C~k~F~   79 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR--DYICEFSGPSSG   79 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSC--CCSCCSSSCCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCC--CeeCCCCCCCCC
Confidence            456777776  8888888888888887 677888888887  8888888888888888888887  888888888873

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=3.6e-17  Score=104.35  Aligned_cols=79  Identities=24%  Similarity=0.369  Sum_probs=66.6

Q ss_pred             HHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCC----CCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        131 LKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA----FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       131 l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~----k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      +..|+++|.++++|.|.+|++.|.....|..|++.++..    ++|.|.+|++.|.....|..|++.|++++  ++.|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~--~~~~~~   80 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD--GVEGEN   80 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCC--SCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCC--CcccCC
Confidence            445777788888888888888888888888888777765    78999999999999999999999999888  899999


Q ss_pred             ccCcc
Q psy16829        207 CHKVY  211 (243)
Q Consensus       207 C~~~f  211 (243)
                      |+.+|
T Consensus        81 ~~~~~   85 (86)
T 1x6h_A           81 SGPSS   85 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=1.7e-16  Score=98.19  Aligned_cols=62  Identities=31%  Similarity=0.685  Sum_probs=53.8

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .+.++++|.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.....|.+|+++|++++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--PYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCC--SEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCC--CEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            3457788999999999999999999999988888  8999999999999999999999998876

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.65  E-value=2.9e-16  Score=99.77  Aligned_cols=78  Identities=19%  Similarity=0.396  Sum_probs=59.5

Q ss_pred             cccC--CcccccccChHHHHHHHHhhcCCCCccccc--ccccccChhHHHHHHHHhcCCCCeeccc---cccccCChhHH
Q psy16829        115 LYQC--NECEFVGKRLTHLKTHKKIHEKVYGVYCDV--CGRGFHQNNEVTLHKIKEHNAFPFQCEI---CHKIFTNKSTM  187 (243)
Q Consensus       115 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~k~~~C~~---C~~~f~~~~~l  187 (243)
                      ||.|  ..|++.|.....|..|++.|.++++|.|+.  |++.|.....|..|++.|++   |.|+.   |++.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4667  667777777777777777777777777776  77777777777777777776   77877   88888888888


Q ss_pred             HHHHHHhC
Q psy16829        188 WSHKKAHK  195 (243)
Q Consensus       188 ~~H~~~h~  195 (243)
                      ..|++.|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            88877764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.8e-16  Score=97.60  Aligned_cols=63  Identities=24%  Similarity=0.560  Sum_probs=56.7

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|++.|.....|.+|+++|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK--PYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSC--CEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCC--CeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            45778899999999999999999999999999888  9999999999999999999999998753

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.3e-16  Score=104.33  Aligned_cols=66  Identities=14%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             cCCCCeeccccccccCChhHHHHHHHH-h---CCCCCCCcccccccCccCChHHHHHH-HhhcCCCC-CCCCCC
Q psy16829        167 HNAFPFQCEICHKIFTNKSTMWSHKKA-H---KPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGVK-HECEGG  234 (243)
Q Consensus       167 ~~~k~~~C~~C~~~f~~~~~l~~H~~~-h---~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~-~~c~~c  234 (243)
                      .+++||.|+.|++.|.....|..|++. |   .+++  ||.|+.|+++|...+.|.+| +++|+|++ |.|..+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ek--pf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS--SYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSC--CEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCC--CcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            367777777777777777777777764 6   3344  77777777777777777777 67777777 777653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=3.2e-16  Score=98.83  Aligned_cols=62  Identities=18%  Similarity=0.353  Sum_probs=55.5

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHH-hhcCCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHK-QVHLGVK  228 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~  228 (243)
                      .+...++|.|++|++.|.....|.+|+++|++++  ||.|+.|+++|...++|.+|+ ++|.+++
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQ--VFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSS--SEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCC--ccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3456788999999999999999999999999998  999999999999999999996 5788764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.62  E-value=3.1e-16  Score=91.81  Aligned_cols=57  Identities=26%  Similarity=0.528  Sum_probs=47.8

Q ss_pred             CCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCC
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ++++|.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.....|.+|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEK--PYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCC--CEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCC--CcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4678999999999999999999999999888  99999999999999999999998874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.5e-16  Score=95.69  Aligned_cols=61  Identities=18%  Similarity=0.417  Sum_probs=53.3

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +.++++|.|.+|++.|.....|..|++.|++++  ||.|+.|++.|.....|.+|+++|++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDR--PFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSC--SEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            457888999999999999999999998888887  8999999999999999999998888765

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=1.1e-15  Score=89.52  Aligned_cols=56  Identities=21%  Similarity=0.468  Sum_probs=50.6

Q ss_pred             CeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.+.+.|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVR--PYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC--CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCC--CccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5889999999999999999999999888  9999999999999999999999988764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=4.7e-16  Score=93.94  Aligned_cols=62  Identities=18%  Similarity=0.551  Sum_probs=54.5

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHH-h-CCCCCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKA-H-KPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +.|.+++||.|+.|++.|.....|..|++. | .+++  ||.|+.|++.|.+.+.|.+|+++|+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~--~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK--VYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCC--CEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCc--CeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            456788999999999999999999999998 5 3666  999999999999999999999998874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=9.4e-16  Score=95.59  Aligned_cols=65  Identities=23%  Similarity=0.593  Sum_probs=54.8

Q ss_pred             hcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        138 HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       138 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      +.++++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|+++|++++  ||.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~--p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG--PSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCC--CCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCC--CCCC
Confidence            4567788888888888888888888888888888888888888888888888888888887  8877

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.7e-16  Score=97.47  Aligned_cols=66  Identities=26%  Similarity=0.462  Sum_probs=56.1

Q ss_pred             HHHHHHhcCCCCeeccccccccCChhHHHHHHHH-hCCC-CCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        160 TLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKA-HKPE-DQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       160 ~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ..|++.|.+++||.|++|++.|.....|..|++. |.++ +  ||.|+.|++.|.....|.+|+++|++.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~--~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA--KFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCS--SEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCC--ccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            4577788899999999999999999999999974 5543 4  899999999999999999999987653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=5.7e-16  Score=101.23  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             cChHHHHHHHHhhcCCCCccccccccccc-ChhHHHHHHHHhcC-CCCeeccccccccCChhHHHHHHHHhCCCCCCCcc
Q psy16829        126 KRLTHLKTHKKIHEKVYGVYCDVCGRGFH-QNNEVTLHKIKEHN-AFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWE  203 (243)
Q Consensus       126 ~~~~~l~~H~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~-~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~  203 (243)
                      .....+..|++.|.++++|.|.+|++.|. ....|..|++.|++ +++|.|.+|++.|.....|..|++.|++++  |+.
T Consensus         7 ~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k--p~~   84 (98)
T 2gqj_A            7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK--PSD   84 (98)
T ss_dssp             CCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC--SSC
T ss_pred             CCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCC--CCC
Confidence            33444567777777777888888888887 77888888887777 778888888888888888888888888777  544


Q ss_pred             c
Q psy16829        204 C  204 (243)
Q Consensus       204 C  204 (243)
                      -
T Consensus        85 ~   85 (98)
T 2gqj_A           85 A   85 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=5.9e-15  Score=95.79  Aligned_cols=75  Identities=16%  Similarity=0.057  Sum_probs=62.8

Q ss_pred             ccccChHHHHHHHHhhcCCCCcccccccccc-cChhHHHHHHHHhcCCCCeeccccccccCChhHHHHH-HHHhCCCC
Q psy16829        123 FVGKRLTHLKTHKKIHEKVYGVYCDVCGRGF-HQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH-KKAHKPED  198 (243)
Q Consensus       123 ~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H-~~~h~~~~  198 (243)
                      ..+.....|..|++.+.++++|.|+.|++.| .....|..|++.| ++++|.|.+|++.|.....|..| ++.|+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCC
Confidence            3556677788888888888889999999999 8888999998888 88899999999999999999999 77777543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.5e-15  Score=98.11  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             cCCCCcccccccccccChhHHHHHHHH-h---cCCCCeeccccccccCChhHHHHH-HHHhCCCCCCCccccccc
Q psy16829        139 EKVYGVYCDVCGRGFHQNNEVTLHKIK-E---HNAFPFQCEICHKIFTNKSTMWSH-KKAHKPEDQIPWECEHCH  208 (243)
Q Consensus       139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-~---~~~k~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~~~C~~C~  208 (243)
                      .++++|.|..|++.|.....|..|++. |   .+++||.|.+||+.|.....|..| ++.|++++  ||.|.++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek--py~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE--NFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCC--CEEEEECC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCC--CeeCCccc
Confidence            566777777787777777777777763 5   457778888888888888888888 67788777  88887644

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.56  E-value=6.2e-15  Score=91.07  Aligned_cols=64  Identities=23%  Similarity=0.553  Sum_probs=52.9

Q ss_pred             hhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCc
Q psy16829        137 IHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPW  202 (243)
Q Consensus       137 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  202 (243)
                      .+.++++|.|..|++.|.....|..|++.|+++++|.|.+|++.|.....|..|++.|++++  ||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--p~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK--PY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSC--CC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCC--CC
Confidence            34567788888888888888888888888888888888888888888888888888888877  65

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.56  E-value=1e-15  Score=105.27  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             cChHHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        126 KRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       126 ~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      .....|..|+ .|.++++|.|.+|++.|.....|..|++.|  ++||.|+.|++.|.....|..|++.|++.
T Consensus        58 ~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           58 DESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            3445555555 577778888888888888888888888776  77888888888888888888888888765

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5.2e-15  Score=87.48  Aligned_cols=56  Identities=27%  Similarity=0.725  Sum_probs=51.0

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHH-hhcCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHK-QVHLGV  227 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~  227 (243)
                      +||.|+.|++.|.....|..|++.|++++  ||.|+.|++.|.+.+.|.+|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK--PYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC--SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCC--CccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            57999999999999999999999999888  999999999999999999996 688764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=7.6e-15  Score=91.64  Aligned_cols=61  Identities=25%  Similarity=0.462  Sum_probs=53.5

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCC---CCCCCcccccccCccCChHHHHHHHh-hcCCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKP---EDQIPWECEHCHKVYPNKRSYKRHKQ-VHLGVK  228 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~  228 (243)
                      |.++++|.|.+|++.|.....|..|++.|++   ++  ||.|+.|++.|.....|.+|++ .|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~--~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL--RFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTC--CEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCc--ccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            5688999999999999999999999999986   56  9999999999999999999984 566655

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.1e-14  Score=88.89  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             hcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        138 HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       138 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +.++++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            4567778888888888888888888888778888888888888888888888888888776

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=83.73  Aligned_cols=56  Identities=23%  Similarity=0.507  Sum_probs=44.9

Q ss_pred             CCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        141 VYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      +++|.|.+|++.|.....|..|++.|++++||.|++|++.|.....|..|++.|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            56788888888888888888888888888888888888888888888888888763

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.7e-14  Score=88.53  Aligned_cols=63  Identities=24%  Similarity=0.496  Sum_probs=52.7

Q ss_pred             HhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        136 KIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       136 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +.|.++++|.|.+|++.|.....|..|++.|+++++|.|++|++.|.....|..|+++|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            456778888888888888888888888888888888888888888888888888888887764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3e-17  Score=101.33  Aligned_cols=69  Identities=19%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             hHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        157 NEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       157 ~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      ..|..|++.|.++++|.|+.|++.|.....|..       ++  ||.|+.|++.|...+.|..|+++|++++ |.|+.|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~--~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RK--TPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SS--SCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CC--CCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            345567777777777888888888777776665       34  7888888888888888888888888877 888776

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.4e-14  Score=88.13  Aligned_cols=58  Identities=19%  Similarity=0.560  Sum_probs=52.2

Q ss_pred             hcCCCCeecc--ccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcC
Q psy16829        166 EHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       166 ~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      +.++++|.|+  .|++.|.....|..|++.|++++  ||.|+.|++.|...+.|.+|+++|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCC--CEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCC--CeECCCCCchhCCHHHHHHHHHhcC
Confidence            4578899997  59999999999999999999888  9999999999999999999999885

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4.3e-14  Score=91.65  Aligned_cols=61  Identities=23%  Similarity=0.331  Sum_probs=51.1

Q ss_pred             CeeccccccccCChhHHHHHHHH-hCCCCCCC--------cccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKA-HKPEDQIP--------WECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      .|.|+.|++.|.....|..|++. |.+++  +        |.|+.|++.|.....|.+|+++|++++ |.|++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~--~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGP--EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCT--TCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCC--CCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            35688888888888888888887 76665  5        899999999999999999999999988 98864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.47  E-value=7e-14  Score=81.60  Aligned_cols=56  Identities=20%  Similarity=0.460  Sum_probs=49.1

Q ss_pred             CcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        143 GVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       143 ~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      ||.|..|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57888899999888899999888888889999999999999999999998888765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=86.08  Aligned_cols=62  Identities=23%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             CCCCCcceeeccccchhccChhhHHhhhhccCC-CcccccccccccCChHHHHHHHHhhcCCC
Q psy16829         52 DGEDKPLLLTCVECNEDFINVNDFVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTSD  113 (243)
Q Consensus        52 ~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  113 (243)
                      ....+.+.+.|++|++.|.....|.+|+++|++ +||.|..|++.|.....|.+|++..|.++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            344456678899999999999999999988887 88999999999999999999976433544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.4e-14  Score=85.13  Aligned_cols=61  Identities=26%  Similarity=0.429  Sum_probs=51.1

Q ss_pred             HhhcCCCCcccccccccccChhHHHHHHHH-h-cCCCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        136 KIHEKVYGVYCDVCGRGFHQNNEVTLHKIK-E-HNAFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       136 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-~-~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      ++|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.....|..|++.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            456778888888888888888888888887 4 378889999999999999999999888875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=5.5e-14  Score=87.46  Aligned_cols=65  Identities=26%  Similarity=0.415  Sum_probs=36.6

Q ss_pred             HHhhhhccCC-CcccccccccccCChHHHHHHHHhhcCC-CCcccCCcccccccChHHHHHHHHhhc
Q psy16829         75 FVSHLRGHDS-TSHVCDICLEAFPSSDDRDLHFLSHLTS-DGLYQCNECEFVGKRLTHLKTHKKIHE  139 (243)
Q Consensus        75 l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~  139 (243)
                      |.+|+++|.+ ++|.|..|++.|.....|.+|++.++.+ .++|.|..|++.|.....|..|++.++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            3455556555 5566666666666666666666532233 255666666666666666666655543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-16  Score=98.22  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             HHHHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        129 THLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       129 ~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      ..|..|++.|.++++|.|.+|++.|.....|..       +++|.|+.|++.|.....|..|+++|++++  ||.|++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~--~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKK--TSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCC--CSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCC--CCCCCCC
Confidence            345667777777888888888888877776655       778899999999999899999988888888  8998887

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1e-13  Score=83.55  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             cCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc-cccCccCChHHHHHHHhhcCCC
Q psy16829        167 HNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE-HCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       167 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      .+.+||.|..|++.|. ...|..|+++ ++++  ||.|+ .|+++|..++.|..|+++|...
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~--p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRL--PVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSS--EEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCc--CccCCcccCcccccHHHHHHHHHhhccc
Confidence            3577888999999998 8889999888 7777  89998 8999998888999998888654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.9e-13  Score=83.74  Aligned_cols=59  Identities=27%  Similarity=0.618  Sum_probs=47.4

Q ss_pred             hcCCCCcccccccccccChhHHHHHHHHhcC---CCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        138 HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHN---AFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       138 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~---~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |.++++|.|.+|++.|.....|..|++.|++   +++|.|.+|++.|.....|..|++.++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            5677788888888888888888888888875   7888888888888888888888855443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=4.6e-13  Score=78.93  Aligned_cols=56  Identities=27%  Similarity=0.648  Sum_probs=45.3

Q ss_pred             CCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHH-HHhCCC
Q psy16829        142 YGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHK-KAHKPE  197 (243)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~-~~h~~~  197 (243)
                      ++|.|..|++.|.....|..|++.|+++++|.|+.|++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            36788888888888888888888888888888888888888888888886 456554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=1e-12  Score=75.71  Aligned_cols=46  Identities=20%  Similarity=0.368  Sum_probs=33.9

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHh-hcCCCC-CCCCCCCCCccCc
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLGVK-HECEGGPIPALAL  241 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~-~~c~~c~~~~~~~  241 (243)
                      |.+++  ||.|++|++.|.....|.+|++ +|++++ |.|+.|++.|+++
T Consensus         7 ~~~~k--~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            7 GSVGK--PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCSSC--CEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCC--CeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            34444  7778888888888888888876 777777 7888888877764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=84.61  Aligned_cols=60  Identities=20%  Similarity=0.214  Sum_probs=43.0

Q ss_pred             cccccccccccChhHHHHHHHH-hcCCCC--------eeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        144 VYCDVCGRGFHQNNEVTLHKIK-EHNAFP--------FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~-~~~~k~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      +.|..|++.|.....|..|++. |.++++        |.|++|++.|.....|..|+++|++++  ||.|+
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK--SGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCC--CCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCC--CCCCC
Confidence            4566666666666666666665 555555        778888888888888888888888777  78775

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.34  E-value=1.1e-12  Score=80.41  Aligned_cols=56  Identities=23%  Similarity=0.610  Sum_probs=51.0

Q ss_pred             cCCCCeeccc--cccccCChhHHHHHHHHhCCCCCCCccccc--ccCccCChHHHHHHHhhc
Q psy16829        167 HNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       167 ~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H  224 (243)
                      ...++|.|..  |++.|.....|..|++.|++++  ||.|+.  |++.|.....|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK--PFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSC--SEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCC--CccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4678899988  9999999999999999999988  999965  999999999999999876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.33  E-value=3.4e-13  Score=74.98  Aligned_cols=43  Identities=28%  Similarity=0.592  Sum_probs=31.0

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEK--PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSC--SCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCC--ceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.1e-12  Score=80.59  Aligned_cols=59  Identities=29%  Similarity=0.587  Sum_probs=45.5

Q ss_pred             hhcCCCCcccc--cccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhC
Q psy16829        137 IHEKVYGVYCD--VCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       137 ~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      .+.++++|.|+  .|++.|.....|..|++.|+++++|.|++|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            35566777886  488888888888888888888888888888888888888888877763

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4e-13  Score=74.67  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=31.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEK--PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCC--SCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCC--CccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            556666666  7777777777777777777777777777 777765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.1e-13  Score=73.92  Aligned_cols=43  Identities=21%  Similarity=0.465  Sum_probs=31.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...++|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEK--LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCC--CCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCC--CeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            556666666  7777777777777777777777777777 777765

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.3e-13  Score=74.17  Aligned_cols=43  Identities=23%  Similarity=0.490  Sum_probs=28.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGER--PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCC--SEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCC--CeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666  6777777777777777777777776666 666665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.32  E-value=6.3e-13  Score=73.87  Aligned_cols=43  Identities=26%  Similarity=0.594  Sum_probs=33.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEK--TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCC--CCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCc--CeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            566677777  8888888888888888888888888877 888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=4.7e-13  Score=73.62  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=27.0

Q ss_pred             HHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        191 KKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       191 ~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      ++.|++++  ||.|+.|+++|...+.|.+|+++|++++ |.|+.|
T Consensus         2 ~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEK--PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCC--CEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCc--CccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555  6666666666666666666666666666 666655

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.5e-13  Score=73.79  Aligned_cols=43  Identities=26%  Similarity=0.607  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKK--PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCS--SCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCc--CeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            556677766  7888888888888888888887887777 777766

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.32  E-value=5.2e-13  Score=74.20  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=27.5

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEK--PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCC--SBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCC--CcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445566555  6666666666666666666666666666 666655

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.8e-13  Score=74.02  Aligned_cols=43  Identities=28%  Similarity=0.604  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEK--PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCC--SEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCC--CeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            556667666  7777777777777777777777777777 777766

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.7e-13  Score=73.76  Aligned_cols=43  Identities=23%  Similarity=0.584  Sum_probs=32.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|.+++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEK--PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCC--SBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCC--CeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556677776  7888888888888888888887787777 777766

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.6e-13  Score=73.78  Aligned_cols=43  Identities=30%  Similarity=0.612  Sum_probs=32.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 h~~~h~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEK--PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCS--SCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCC--CeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455677766  7778778877877777877877777777 777766

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.6e-13  Score=74.07  Aligned_cols=43  Identities=23%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGK--HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSC--CEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCC--CeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.4e-13  Score=73.58  Aligned_cols=43  Identities=26%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|+++|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEK--PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSC--SCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCC--CcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777765

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.7e-13  Score=73.50  Aligned_cols=43  Identities=26%  Similarity=0.474  Sum_probs=32.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEK--PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCC--SCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCC--CcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            455677766  7777777777777777777777777777 777766

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.4e-13  Score=73.82  Aligned_cols=43  Identities=28%  Similarity=0.642  Sum_probs=31.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEK--PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCC--SSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCC--CeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777765

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=6.6e-13  Score=73.78  Aligned_cols=43  Identities=30%  Similarity=0.547  Sum_probs=30.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEK--PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCC--SEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCc--CccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455666666  7777777777777777777777777777 777765

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.6e-13  Score=74.07  Aligned_cols=43  Identities=28%  Similarity=0.622  Sum_probs=30.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEK--PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSS--SEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCC--CeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            455666666  7777777777777777777777777766 777665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.5e-13  Score=73.54  Aligned_cols=43  Identities=26%  Similarity=0.609  Sum_probs=34.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEK--PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCC--TTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCc--CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            566677777  8888888888888888888888888877 888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.5e-13  Score=73.31  Aligned_cols=43  Identities=26%  Similarity=0.522  Sum_probs=31.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEK--PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCC--SEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCC--CeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            556666666  7777777777777777777777777777 777765

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.9e-13  Score=73.22  Aligned_cols=43  Identities=21%  Similarity=0.484  Sum_probs=28.5

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEK--PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCC--SEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCc--CeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666  6677777777776677777766666666 666654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.30  E-value=6.6e-13  Score=73.77  Aligned_cols=43  Identities=26%  Similarity=0.496  Sum_probs=30.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVK--PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCC--SEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCC--ceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777665

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8e-13  Score=73.43  Aligned_cols=43  Identities=30%  Similarity=0.582  Sum_probs=28.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEK--PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCC--SEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCc--CcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666  6777777777777777777777776666 666655

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.5e-13  Score=73.81  Aligned_cols=43  Identities=19%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|++|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTK--SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSC--SEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCC--CeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777765

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.7e-13  Score=73.75  Aligned_cols=43  Identities=28%  Similarity=0.572  Sum_probs=27.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|+++|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGEN--PYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSC--CEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCc--CcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555555  6666666666666666666666666666 666655

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.7e-13  Score=73.49  Aligned_cols=43  Identities=21%  Similarity=0.578  Sum_probs=27.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|.+.+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEK--PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCC--SEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCc--CeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            445555555  6666666666666666666666666666 666655

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=73.26  Aligned_cols=43  Identities=23%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEK--PHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCC--SCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCC--CeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            556677776  7888888888888888888888887777 777766

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.7e-13  Score=74.39  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEK--SHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCS--SEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCC--CeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=7.5e-13  Score=73.55  Aligned_cols=43  Identities=23%  Similarity=0.551  Sum_probs=30.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEK--RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSC--CEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCc--CcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777665

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.30  E-value=8e-13  Score=73.42  Aligned_cols=43  Identities=26%  Similarity=0.521  Sum_probs=31.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEK--PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCC--SEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCc--CeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 777765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.9e-13  Score=73.69  Aligned_cols=43  Identities=23%  Similarity=0.406  Sum_probs=28.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEK--PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCC--SEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCC--CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566665  6777777777777777777766666666 666655

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.2e-13  Score=73.87  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVK--PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCC--SEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCc--CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566665  6666666666666666666666666666 666655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.6e-13  Score=74.09  Aligned_cols=43  Identities=21%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|+++|...+.|..|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGER--PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCC--CEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCC--CEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            455566666  6777777777777777777776666666 666665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.6e-13  Score=73.29  Aligned_cols=43  Identities=28%  Similarity=0.586  Sum_probs=29.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEK--PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCC--SEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCC--CeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666  6777777777777777777777777666 777665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=9.7e-13  Score=73.08  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=28.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 h~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEK--PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCC--SEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCC--CcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            445566665  6667667777776667777766666666 666655

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8e-13  Score=73.43  Aligned_cols=43  Identities=28%  Similarity=0.597  Sum_probs=29.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEK--PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCC--CEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCC--CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666  7777777777777777777777777766 777665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.5e-13  Score=73.31  Aligned_cols=43  Identities=26%  Similarity=0.567  Sum_probs=26.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEK--PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSC--SEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCC--CEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            445555555  6666666666666666666666666666 666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.8e-13  Score=73.72  Aligned_cols=43  Identities=23%  Similarity=0.553  Sum_probs=28.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGER--PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCC--SEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCC--CcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455566665  6667667777776667777766666666 666655

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=9.8e-13  Score=73.06  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=28.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREK--SHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCC--CEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCC--CEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445566665  6666666666666666666666666666 666655

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.1e-13  Score=73.40  Aligned_cols=43  Identities=23%  Similarity=0.569  Sum_probs=28.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 h~~~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEK--PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCC--SSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCC--CcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445566666  6777777777777777777777777666 777665

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.9e-12  Score=77.83  Aligned_cols=57  Identities=16%  Similarity=0.273  Sum_probs=46.8

Q ss_pred             CCCCcccccccccccChhHHHHHHHHhcCCCCeecc-ccccccCChhHHHHHHHHhCCCC
Q psy16829        140 KVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCE-ICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       140 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~-~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      ++++|.|..|++.|. ...|..|++. ++++||.|+ .|++.|.....|..|++.|...+
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            456788888888888 8888888887 888888888 88888888888888888887665

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.3e-13  Score=73.60  Aligned_cols=43  Identities=30%  Similarity=0.580  Sum_probs=29.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEK--PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCC--SEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCC--CeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            455566666  6777777777777777777777777666 777665

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.3e-13  Score=73.59  Aligned_cols=43  Identities=23%  Similarity=0.571  Sum_probs=31.5

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEK--PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCC--SEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCC--CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            556677666  7777777777777777777777777777 777654

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=72.60  Aligned_cols=43  Identities=21%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|.....|.+|+++|++++ |.|+.|
T Consensus         3 h~~~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVN--PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCC--SEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCC--CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445566666  7777777777777777777777777777 777665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.6e-13  Score=73.30  Aligned_cols=43  Identities=26%  Similarity=0.541  Sum_probs=26.0

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 h~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEK--PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSC--CEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCc--CeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            444555555  6666666666666666666666666665 666554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6.1e-13  Score=73.92  Aligned_cols=43  Identities=30%  Similarity=0.636  Sum_probs=25.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEK--PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCS--SEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCC--CeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            444555555  6666666666666666666666666655 666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=7.4e-13  Score=73.57  Aligned_cols=43  Identities=28%  Similarity=0.580  Sum_probs=29.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEK--PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCC--SEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCC--CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666  6777777777777777777777777666 777665

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=72.84  Aligned_cols=43  Identities=28%  Similarity=0.527  Sum_probs=26.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      |+++|.+++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         3 h~~~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEK--PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCC--SEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCC--CeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            344555555  6666666666666666666666666666 666655

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.26  E-value=1.6e-12  Score=72.23  Aligned_cols=44  Identities=27%  Similarity=0.402  Sum_probs=37.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCS--SCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=72.02  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=38.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCC--TTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5667788899999999999999999999999998888  8999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=72.03  Aligned_cols=43  Identities=28%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHh-hcCCCC-CCCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLGVK-HECEGG  234 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~-~~c~~c  234 (243)
                      |++.|.+++  ||.|+.|++.|...+.|.+|++ +|++++ |.|+.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKK--PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCC--SBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCC--CEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            556677776  7888888888888888888887 787777 887766

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-12  Score=71.49  Aligned_cols=44  Identities=27%  Similarity=0.475  Sum_probs=37.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK--PSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSC--SCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            3456778888999999999999899999988888888  8888877

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=5.4e-12  Score=72.57  Aligned_cols=46  Identities=24%  Similarity=0.444  Sum_probs=40.4

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHH-HhCCCCCCCcccccccCccCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKK-AHKPEDQIPWECEHCHKVYPN  213 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~C~~~f~~  213 (243)
                      +.++++|.|++|++.|.....|..|++ .|.+++  ||.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k--~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCC--CCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCC--CccCCCCCCCCCC
Confidence            457889999999999999999999987 788888  9999999999875

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.7e-12  Score=72.02  Aligned_cols=44  Identities=25%  Similarity=0.455  Sum_probs=37.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSC--CSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5667788888999999999999999999999988888  8998877

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.25  E-value=1.9e-12  Score=71.88  Aligned_cols=44  Identities=20%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|++++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCC--CSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.6e-12  Score=71.33  Aligned_cols=45  Identities=24%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             HHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        161 LHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      .|++.|+++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQK--PSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCC--CSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            36667888899999999999999999999999998888  8999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=71.58  Aligned_cols=44  Identities=18%  Similarity=0.361  Sum_probs=38.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYR--PSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCC--SSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCC--CCCCCCC
Confidence            5667788889999999999999999999999998888  8999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.9e-12  Score=71.86  Aligned_cols=44  Identities=18%  Similarity=0.336  Sum_probs=37.3

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|++++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSS--CCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCC--CCCCCCC
Confidence            5667778888888888888888888888888888887  8888877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.1e-12  Score=71.65  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|++++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGER--HSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCS--SCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=71.77  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=37.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSS--CSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCC--CCCCCCC
Confidence            5567788888999999999999999999999998888  8998887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=72.20  Aligned_cols=44  Identities=32%  Similarity=0.418  Sum_probs=38.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSS--CSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5667788889999999999999999999999998888  8999877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.3e-12  Score=71.49  Aligned_cols=45  Identities=29%  Similarity=0.478  Sum_probs=38.5

Q ss_pred             HHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        161 LHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      .|++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCC--SCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            35667788889999999999999999999999998888  8999877

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.8e-12  Score=71.95  Aligned_cols=44  Identities=18%  Similarity=0.465  Sum_probs=37.3

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK--PSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCC--CSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCC--CCCCCCC
Confidence            5667778888888888888888888888888888888  8888877

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=71.63  Aligned_cols=44  Identities=27%  Similarity=0.479  Sum_probs=36.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCC--SSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=72.10  Aligned_cols=44  Identities=23%  Similarity=0.441  Sum_probs=37.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCC--CCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCC--CCCCCCC
Confidence            5667788888999999999999999999988888887  8988887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.8e-12  Score=71.93  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=37.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCS--CCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5667778888888888888888888888888888887  8888877

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.24  E-value=2.7e-12  Score=69.77  Aligned_cols=41  Identities=24%  Similarity=0.541  Sum_probs=30.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|++++  ||.|+.|+++|.+.+.|.+|+++|++++ |.|+
T Consensus         1 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGEN--PYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCC--SEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCC--CccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            345666666  7888888888888888888877777777 7774

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.9e-12  Score=71.84  Aligned_cols=44  Identities=23%  Similarity=0.434  Sum_probs=37.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVK--PSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCC--SCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.8e-12  Score=71.14  Aligned_cols=42  Identities=21%  Similarity=0.478  Sum_probs=25.5

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEK--PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCC--SEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCC--CEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444555555  6666666666666666666666666665 66654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.23  E-value=1.8e-12  Score=74.59  Aligned_cols=48  Identities=21%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             cccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        179 KIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       179 ~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +.|.....|..|++.|++++  ||.|+.|++.|...+.|..|+++|+|++
T Consensus         4 k~~~~~~~l~~h~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k   51 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQ--PATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSC--CEECTTTCCEESSHHHHHHHHHHHTTTS
T ss_pred             cccCCCcchhhHHHhcCCCC--CccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            45666677777777777777  7777777777777777777777777766

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.9e-12  Score=71.90  Aligned_cols=44  Identities=25%  Similarity=0.445  Sum_probs=36.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCC--CCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.23  E-value=1.8e-12  Score=71.96  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=38.8

Q ss_pred             HHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        161 LHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      .|++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVK--PSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCC--CSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            35667788899999999999999999999999998888  8999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.1e-12  Score=71.71  Aligned_cols=44  Identities=23%  Similarity=0.427  Sum_probs=38.3

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCC--CSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5567788899999999999999999999999998888  8999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.6e-12  Score=71.31  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=37.3

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCS--CCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            5667788888888888888888888888888888887  8888877

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.8e-12  Score=69.10  Aligned_cols=41  Identities=15%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|.+++  ||.|+.|+++|...+.|.+|+++|++++ |.|+
T Consensus         1 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEK--PYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCC--SCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCC--CeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            345677776  8888888888888888888888888777 7774

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.6e-12  Score=71.32  Aligned_cols=44  Identities=20%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK--HSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCC--CSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5667788889999999999999999999999988888  8999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2e-12  Score=71.79  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=37.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|++++||.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCC--CSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566788888999999999999999999988888887  8998877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.23  E-value=1.8e-12  Score=71.94  Aligned_cols=44  Identities=18%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSS--CSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCC--CcCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.9e-12  Score=71.83  Aligned_cols=45  Identities=22%  Similarity=0.272  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        161 LHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      .|++.|.+++||.|++|++.|...+.|..|+++|++++  ||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREK--SSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTT--SSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCC--CCCCCCC
Confidence            35667778888888888888888888888888888887  8888877

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.8e-12  Score=71.18  Aligned_cols=44  Identities=30%  Similarity=0.476  Sum_probs=37.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEK--PSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSS--CCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            5566788889999999999999999999999998888  8999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.23  E-value=2e-12  Score=71.75  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCC--CCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.9e-12  Score=71.82  Aligned_cols=44  Identities=27%  Similarity=0.501  Sum_probs=36.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSS--CSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            5567778888888888888888888888888888887  8888876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.6e-12  Score=71.29  Aligned_cols=45  Identities=31%  Similarity=0.483  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        161 LHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      .|++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCC--CSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            36677888899999999999999999999999998888  8999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.2e-12  Score=71.62  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEK--PSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSC--SSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.1e-12  Score=71.69  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=36.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|+.|++.|.....|..|+++|++++  ||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK--TSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCC--CCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            4566778888888888888888888888888888877  8888877

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2e-12  Score=71.80  Aligned_cols=44  Identities=25%  Similarity=0.320  Sum_probs=37.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSC--CSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5667788888999999999999899999988888888  8888877

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.1e-12  Score=71.71  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=36.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCC--CCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.8e-12  Score=71.93  Aligned_cols=44  Identities=23%  Similarity=0.450  Sum_probs=37.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|++++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGK--PSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCC--CSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            5567788888999999999999999999988888888  8888877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.22  E-value=2.4e-12  Score=71.43  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=37.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|++++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEK--PSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCC--CCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            5667788889999999999999999999998888888  8999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.7e-12  Score=71.23  Aligned_cols=44  Identities=25%  Similarity=0.452  Sum_probs=37.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEK--PSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCC--CSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCC--CCCCCCC
Confidence            5567788888999999999999999999999988888  8998887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=3.4e-12  Score=70.82  Aligned_cols=44  Identities=16%  Similarity=0.193  Sum_probs=37.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK--NSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCS--CCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5566778888999999999998889999988888888  8888877

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.22  E-value=9.9e-12  Score=68.54  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=26.3

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGP  235 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~  235 (243)
                      |++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.||
T Consensus         5 h~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEK--PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCC--SSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCC--CCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45555  6666666666666666666666666666 6666664

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=71.50  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQR--PSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCC--CCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            4556677788888888888888888888888888777  8888776

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.1e-12  Score=71.67  Aligned_cols=44  Identities=25%  Similarity=0.377  Sum_probs=37.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGER--PSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCC--SSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCC--CCCCCCC
Confidence            5567778889999999999999999999999888888  8999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.5e-12  Score=71.39  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=36.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGEN--PSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSC--CSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888888887  8888876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.1e-12  Score=71.64  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCS--CCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            5566777888888888888888888888888888777  8888776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.6e-12  Score=71.26  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEK--CSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSC--SSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5567778888999999999999999999988888888  8988877

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.4e-12  Score=69.98  Aligned_cols=42  Identities=24%  Similarity=0.535  Sum_probs=33.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKK--PYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSC--SCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCC--CcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            556677777  8888888888888888888888888887 88864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3e-12  Score=71.02  Aligned_cols=42  Identities=24%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEK--PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCC--CEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCC--CEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            556677766  7888888888888888888887787777 77764

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=1.1e-11  Score=69.32  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=25.1

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC-CCCCCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGPI  236 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~  236 (243)
                      ||.|++|++.|.....|.+|+++|++++ |.|+.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            6777777777777777777777777666 77777664

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.20  E-value=3.7e-12  Score=70.66  Aligned_cols=44  Identities=23%  Similarity=0.442  Sum_probs=37.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREK--PSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSS--CCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            4566778888888888888888888888888888887  8888877

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.5e-12  Score=69.94  Aligned_cols=42  Identities=26%  Similarity=0.578  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEK--PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCC--SCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCc--CeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            566777777  8888888888888888888888888888 88864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.4e-12  Score=70.80  Aligned_cols=44  Identities=16%  Similarity=0.239  Sum_probs=36.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEK--LSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCC--CCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCC--CCCCCCC
Confidence            4556778888888888888888888888888888887  8888877

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.2e-12  Score=69.72  Aligned_cols=42  Identities=24%  Similarity=0.543  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGK--PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSC--SSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCC--CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566777777  8888888888888888888888888888 88864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2e-12  Score=71.76  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=37.4

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|+++|++++  ||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCC--SSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5566778888889889999888888888988888888  8888877

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.19  E-value=5.3e-12  Score=70.01  Aligned_cols=42  Identities=24%  Similarity=0.505  Sum_probs=29.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEK--PFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCC--SEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCC--CEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555666666  7777777777777777777777777776 77753

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.4e-12  Score=69.98  Aligned_cols=42  Identities=24%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|..|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGER--HYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCC--CEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCC--CeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            556677776  7888888888888888888888888777 77764

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.6e-12  Score=69.62  Aligned_cols=42  Identities=26%  Similarity=0.588  Sum_probs=34.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEK--PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCC--TTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCc--CeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            566777777  8888888888888888888888888888 88864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8e-12  Score=69.27  Aligned_cols=42  Identities=24%  Similarity=0.514  Sum_probs=34.3

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEK--PYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCC--SSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCC--CcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            566777777  8888888888888888888888888888 88864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4e-12  Score=70.51  Aligned_cols=44  Identities=27%  Similarity=0.534  Sum_probs=37.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|+++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSC--CCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            5667788888999999999999999999998888888  8988865

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.4e-12  Score=68.93  Aligned_cols=41  Identities=24%  Similarity=0.548  Sum_probs=29.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |++.|++++  ||.|+.|++.|...++|.+|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEK--PYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCC--SEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCC--CeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            555666666  7777777777777777777777777776 7664

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.2e-12  Score=68.98  Aligned_cols=41  Identities=20%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMK--PYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSS--SSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCc--CeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566677777  8888888888888888888888888877 8774

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.5e-12  Score=69.41  Aligned_cols=42  Identities=21%  Similarity=0.430  Sum_probs=33.7

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEK--CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCC--CCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCC--CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566677777  8888888888888888888888888887 88864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=8.9e-12  Score=69.10  Aligned_cols=42  Identities=26%  Similarity=0.548  Sum_probs=33.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEK--PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSS--SBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCc--CCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            566777777  8888888888888888888888888887 88864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.7e-12  Score=69.49  Aligned_cols=41  Identities=27%  Similarity=0.547  Sum_probs=30.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|++++  ||.|+.|+++|...+.|.+|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGEN--PYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCC--SCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCc--CeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556677776  7788888888888888888877777777 7774

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=6e-12  Score=69.80  Aligned_cols=41  Identities=27%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQR--PYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSS--SEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCc--CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455566666  7777777777777777777777777766 7665

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.4e-12  Score=70.84  Aligned_cols=41  Identities=20%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEK--PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCC--SEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCC--CeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555666666  7777777777777777777777777766 7665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.2e-12  Score=69.46  Aligned_cols=42  Identities=24%  Similarity=0.529  Sum_probs=32.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGEN--PFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCC--SCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCC--CEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            556677777  8888888888888888888888888877 88763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.5e-12  Score=69.65  Aligned_cols=42  Identities=26%  Similarity=0.550  Sum_probs=28.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~~--~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEK--PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCC--SEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCc--CeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            455666666  7777777777777777777777777766 77653

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.6e-12  Score=69.61  Aligned_cols=42  Identities=26%  Similarity=0.529  Sum_probs=30.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEK--PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCC--SEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCC--CcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555666666  7777777777777777777777777777 77753

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.9e-12  Score=69.55  Aligned_cols=44  Identities=25%  Similarity=0.396  Sum_probs=37.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCC--SSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            5567788888999999999999999999999998888  8988865

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.3e-12  Score=69.45  Aligned_cols=42  Identities=24%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~~--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGER--HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCC--CEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCC--CCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            556677766  7888888888888888888877777777 77753

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.7e-12  Score=69.60  Aligned_cols=40  Identities=30%  Similarity=0.640  Sum_probs=27.2

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      .|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         6 ~h~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEK--PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCC--SEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCC--CeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            455555  6777777777777777777777777666 777665

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.1e-12  Score=69.48  Aligned_cols=42  Identities=24%  Similarity=0.490  Sum_probs=29.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEK--PYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCC--CEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCC--CeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            455666666  7777777777777777777777777776 77653

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.2e-12  Score=69.44  Aligned_cols=42  Identities=26%  Similarity=0.549  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEK--PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCC--SEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCc--CEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            556677766  7888888888888888888888887777 77764

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8e-12  Score=69.27  Aligned_cols=42  Identities=21%  Similarity=0.505  Sum_probs=33.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEK--PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSC--CCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCC--CeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            566777777  8888888888888888888888888887 88864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8e-12  Score=69.27  Aligned_cols=42  Identities=21%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |+++|.+++  ||.|++|++.|.....|.+|+++|++++ |.|+.
T Consensus         3 h~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEK--PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCC--SCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCc--ccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            455677777  8888888888888888888888888877 88864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=68.85  Aligned_cols=42  Identities=19%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|.+++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 h~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKK--LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSC--CCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCC--CEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455677766  7777778777777777777877777777 77753

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=8.3e-12  Score=68.49  Aligned_cols=41  Identities=12%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |++.|++++  ||.|+.|++.|...+.|..|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRK--RYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCS--SEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCC--CeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            556677766  7788888888888788888877777777 7774

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.2e-12  Score=69.24  Aligned_cols=40  Identities=23%  Similarity=0.464  Sum_probs=29.7

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      .|.+++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         6 ~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEK--PYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCC--TTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCC--CeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456666  7777777777777777777777777777 777766

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=8.1e-12  Score=68.54  Aligned_cols=41  Identities=17%  Similarity=0.498  Sum_probs=28.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGEN--PFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCC--SEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCC--CeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            455666666  7777777777777777777777777766 6663

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=2.1e-11  Score=67.22  Aligned_cols=42  Identities=19%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccccc
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCH  208 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~  208 (243)
                      .|.+++||.|++|++.|.....|..|+++|++++  ||.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~--~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV--GKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCC--CCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCC--CCCCcCCC
Confidence            4667888999999999999999999999988888  89998886

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=8.2e-12  Score=67.78  Aligned_cols=40  Identities=23%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      |+++|.+++  ||.|+.|+++|...+.|.+|+++|++++ |.|
T Consensus         2 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEK--PYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSC--CBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCC--CEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            455677777  8888888888888888888888888877 776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.9e-12  Score=70.16  Aligned_cols=44  Identities=20%  Similarity=0.360  Sum_probs=36.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHH-HhCCCCCCCcccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKK-AHKPEDQIPWECEHC  207 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~C  207 (243)
                      |++.|.+++||.|++|++.|.....|..|++ .|++++  ||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k--~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK--PSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSC--SSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCC--CCCCCCC
Confidence            5566778888888888888888888888888 888877  8888876

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.5e-12  Score=69.14  Aligned_cols=42  Identities=24%  Similarity=0.557  Sum_probs=32.0

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEK--PYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCC--CEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCC--CeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            556677776  7888888888888888888888888777 77763

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.8e-12  Score=69.30  Aligned_cols=42  Identities=24%  Similarity=0.555  Sum_probs=29.4

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEK--PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCC--SEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCc--CccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            555666666  7777777777777777777777777776 77753

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=8e-12  Score=69.28  Aligned_cols=41  Identities=20%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCC-CC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLG-VK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~-~~-~~c~  232 (243)
                      |+++|.+++  ||.|+.|+++|...+.|.+|+++|++ ++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEK--CFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSC--CEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCC--CEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455666666  77777777777777777777777777 66 7775

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.15  E-value=1.3e-12  Score=77.57  Aligned_cols=49  Identities=18%  Similarity=0.437  Sum_probs=25.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChH
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKR  215 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~  215 (243)
                      |++.|.+++||.|+.|++.|.....|.   +.|++++  ||.|+.|++.|....
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k--~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTG--TFRCTFCHTEVEEDE   53 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTT--EEBCSSSCCBCEECT
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCC--CEECCCCCCccccCc
Confidence            444455555555555555555544443   4455554  555555555554433

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.8e-12  Score=68.10  Aligned_cols=40  Identities=28%  Similarity=0.538  Sum_probs=31.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      |+++|++++  ||.|+.|+++|...+.|.+|+++|++++ |.|
T Consensus         2 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEK--PYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCC--SBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCC--CeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            556677777  8888888888888888888888888877 776

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-11  Score=67.67  Aligned_cols=41  Identities=17%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |++.|.+++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         3 h~~~h~~~~--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKT--TSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSC--CCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCc--CeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            445566666  7777777777777777777777777777 7774

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.2e-11  Score=68.49  Aligned_cols=42  Identities=29%  Similarity=0.597  Sum_probs=31.9

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|.....|.+|+++|++++ |.|+.
T Consensus         3 h~~~h~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEK--PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSS--SCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCC--CcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            445667766  8888888888888888888888888777 87753

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=1.2e-11  Score=67.15  Aligned_cols=40  Identities=18%  Similarity=0.340  Sum_probs=27.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      |++.|.+++  ||.|+.|++.|...++|.+|+++|++++ |.|
T Consensus         2 H~~~H~~~~--~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGET--PYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSC--CEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCC--CeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            344566666  7777777777777777777777777766 665

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=68.62  Aligned_cols=42  Identities=26%  Similarity=0.564  Sum_probs=32.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+.
T Consensus         3 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEK--PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCC--SSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCC--CeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            566677777  8888888888888888888888888877 87753

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8e-12  Score=69.27  Aligned_cols=41  Identities=20%  Similarity=0.389  Sum_probs=32.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|.+++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         3 h~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGER--PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCC--SCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCC--CeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            556677777  8888888888888888888888888777 8776

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=2.5e-11  Score=67.87  Aligned_cols=42  Identities=29%  Similarity=0.495  Sum_probs=36.7

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK  209 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~  209 (243)
                      +.++++|.|.+|++.|.....|..|+++|++++  ||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK--PYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCC--CCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCC--CccCCCCCC
Confidence            456788999999999999999999999999888  999999975

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=7.2e-12  Score=67.98  Aligned_cols=40  Identities=20%  Similarity=0.444  Sum_probs=26.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      |+++|++++  ||.|+.|+++|...+.|.+|+++|++++ |.|
T Consensus         2 H~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEK--PYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSC--SEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCC--CEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            344566666  6777777777777777777777776666 665

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.12  E-value=7e-11  Score=72.12  Aligned_cols=57  Identities=21%  Similarity=0.471  Sum_probs=44.8

Q ss_pred             CCCCcceeeccc--cchhccChhhHHhhhhccCC-Ccccccc--cccccCChHHHHHHHHhh
Q psy16829         53 GEDKPLLLTCVE--CNEDFINVNDFVSHLRGHDS-TSHVCDI--CLEAFPSSDDRDLHFLSH  109 (243)
Q Consensus        53 ~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~h  109 (243)
                      ......+|.|..  |++.|.....|..|++.|.+ ++|.|..  |++.|.....|.+|++.|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            344456688887  88888888888888888877 7888864  888888888888887654

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.12  E-value=1.8e-11  Score=67.78  Aligned_cols=43  Identities=26%  Similarity=0.440  Sum_probs=36.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSC--SSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5667778888889889999988888999988888887  888864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.9e-11  Score=67.73  Aligned_cols=43  Identities=26%  Similarity=0.489  Sum_probs=35.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEK--PSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSS--CCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCC--CCCCCC
Confidence            5567778888888888888888888888888888887  888863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.11  E-value=1.1e-12  Score=77.80  Aligned_cols=49  Identities=6%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             HHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCCCCCccCc
Q psy16829        188 WSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGPIPALAL  241 (243)
Q Consensus       188 ~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~~~~~~  241 (243)
                      ..|++.|++++  ||.|+.|+++|...+.|.   ++|++++ |.|+.||+.|...
T Consensus         3 ~~h~~~H~~~k--~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            3 ETDERDSTNRA--SFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCCSSSCCSSS--EEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEEC
T ss_pred             hhHHHHcCCCC--CccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccC
Confidence            34667777777  888888888888777776   6788877 8888888888654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.11  E-value=1.7e-11  Score=66.50  Aligned_cols=42  Identities=24%  Similarity=0.442  Sum_probs=34.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGES--GPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCC--SCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCC--CCCCC
Confidence            3456778888888888888888888888888888887  88884

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=8.3e-12  Score=69.20  Aligned_cols=41  Identities=17%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEK--PFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCC--SEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCC--CeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555666666  7777777777777777777777777666 7765

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=67.53  Aligned_cols=43  Identities=28%  Similarity=0.549  Sum_probs=35.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCC--CCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5567778888888888888888888888888888887  888864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.5e-11  Score=68.13  Aligned_cols=42  Identities=26%  Similarity=0.536  Sum_probs=36.0

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      +.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSC--CCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            45678888999999999999999999988888888  8998877

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.2e-11  Score=67.43  Aligned_cols=43  Identities=23%  Similarity=0.438  Sum_probs=36.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEK--PSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCS--CSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCC--CCCCCC
Confidence            5566778888889889999988888999988888887  888863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=5.7e-11  Score=64.71  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG  233 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~  233 (243)
                      .|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|++
T Consensus         4 ~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNG--AFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSC--CBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCC--CEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            355666  7777777777777777777777777777 77753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.8e-11  Score=66.37  Aligned_cols=40  Identities=28%  Similarity=0.510  Sum_probs=30.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      |+++|++++  ||.|++|++.|...+.|..|+++|++++ |.|
T Consensus         3 H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEK--PYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCC--SEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCc--CeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            556677777  7888888888888888888888888777 665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=67.84  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=36.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|+++++|.|++|++.|.....|..|+++|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCC--CCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5567788888888888888888888888888888887  888863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=9.3e-12  Score=68.29  Aligned_cols=40  Identities=15%  Similarity=0.404  Sum_probs=25.2

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      |+++|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|
T Consensus         3 H~~~H~~~~--~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSK--SYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCC--CEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCC--CeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            445555555  6666666666666666666666666666 665

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.09  E-value=2.7e-11  Score=69.56  Aligned_cols=52  Identities=12%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             cccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcc
Q psy16829        150 GRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWE  203 (243)
Q Consensus       150 ~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~  203 (243)
                      ++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|++++  ||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--p~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAK--PGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTS--CCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCC--CCC
Confidence            3567777888889999999999999999999999999999999999887  763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.4e-11  Score=67.27  Aligned_cols=43  Identities=28%  Similarity=0.521  Sum_probs=36.3

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|+.|++.|.....|..|+++|++++  ||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSS--SSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5567788888999999999999999999998888887  888864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.4e-11  Score=67.27  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=34.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|.+|++.|.....|..|++.|++++  ||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--p~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCC--CSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCC--CCCCCC
Confidence            5566778888888888888888888888888888877  888863

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.3e-11  Score=65.27  Aligned_cols=41  Identities=17%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             HHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        163 KIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       163 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      ++.|.+++||.|++|++.|.....|..|+++|++++  ||.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS--GPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCS--SCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            455677888888888888888888888888888777  88773

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.6e-11  Score=67.15  Aligned_cols=43  Identities=26%  Similarity=0.423  Sum_probs=35.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEK--PSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCC--CCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCC--CCCCCC
Confidence            5566778888888888888888888888888888887  888863

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.1e-11  Score=66.83  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET--LSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCC--SSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            5667778888999999999999899999988888888  88886

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.5e-11  Score=67.17  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCC--SSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCC--CcCCCC
Confidence            5567778888999999999999999999988888887  888864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.5e-11  Score=65.87  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=35.9

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|+.|++.|.....|..|+++|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGES--GPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSS--CSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCC--CCCCC
Confidence            5667788889999999999999999999999988887  88884

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.3e-11  Score=67.37  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSS--CCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCC--CCCCCC
Confidence            4556777888888888888888888888888888777  888763

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4e-11  Score=66.98  Aligned_cols=41  Identities=27%  Similarity=0.555  Sum_probs=29.2

Q ss_pred             HHhCCCCCCCcccc--cccCccCChHHHHHHHhhcCCCC-CCCCCC
Q psy16829        192 KAHKPEDQIPWECE--HCHKVYPNKRSYKRHKQVHLGVK-HECEGG  234 (243)
Q Consensus       192 ~~h~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c  234 (243)
                      ++|++++  ||.|.  .|++.|...+.|.+|+++|++++ |.|+.|
T Consensus         5 ~~H~~~k--~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEK--PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCC--CEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCC--CeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4466666  77776  67777777777777777777777 777765

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=67.30  Aligned_cols=43  Identities=26%  Similarity=0.474  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|+.|++.|.....|..|+++|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCC--CCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCCC
Confidence            5566777888888888888888888888888888777  888763

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.8e-11  Score=67.78  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=31.9

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      +.|.++++|.|++|++.|.....|..|++.|++++  ||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREK--PSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCC--CCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            34567777888888888888888888877777777  7887776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.8e-11  Score=66.71  Aligned_cols=38  Identities=29%  Similarity=0.642  Sum_probs=26.9

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      .|++++  ||.|+.|++.|.....|.+|+++|++++ |.|+
T Consensus         6 ~h~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQK--PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCC--SEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCc--CccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            455565  7777777777777777777777777776 7775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.5e-11  Score=67.24  Aligned_cols=43  Identities=30%  Similarity=0.501  Sum_probs=34.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGER--PSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCC--CSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5566777888888888888888888888888888877  888863

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.5e-11  Score=66.62  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=34.1

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSC--CCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCC--CCCCCC
Confidence            4556777888888888888888888888888888877  888863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.8e-11  Score=67.00  Aligned_cols=43  Identities=35%  Similarity=0.544  Sum_probs=34.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.+++||.|+.|++.|.....|..|+++|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEK--PSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCC--CSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCC--CCCCCC
Confidence            5566778888888888888888888888888888887  888863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.4e-11  Score=66.67  Aligned_cols=42  Identities=21%  Similarity=0.394  Sum_probs=34.4

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGER--SSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCC--SCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            4566778888888888888888888888888888887  88885

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.2e-12  Score=78.75  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=54.5

Q ss_pred             HHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        158 EVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       158 ~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|..|+..+.+.+++.|+.|++.| ....|..|+ .|.+++  ||.|+.|++.|. ...|..|+++|.+++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~--~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGAR--TELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHC--EEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCC--ceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            456677777888999999999998 488889998 888888  899999998877 588999998888753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.5e-11  Score=66.59  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=35.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGER--HSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCC--BTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCC--CCCCC
Confidence            5667778888899889999988889999988888887  88886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.9e-11  Score=66.96  Aligned_cols=43  Identities=26%  Similarity=0.470  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGEN--PSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSC--CCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5566777888888888888888888888888888777  888763

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.8e-11  Score=66.99  Aligned_cols=43  Identities=23%  Similarity=0.456  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCC--SSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC--CCCCCC
Confidence            5566778888888888888888888888888888887  888863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.8e-11  Score=67.01  Aligned_cols=43  Identities=21%  Similarity=0.431  Sum_probs=34.4

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEK--PSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSC--CCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCCC
Confidence            5566778888888888888888888888888888877  888863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.5e-11  Score=67.20  Aligned_cols=43  Identities=23%  Similarity=0.451  Sum_probs=35.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGER--PSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCC--SCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCC--CCCCCC
Confidence            4556778888888888888888888888888888887  888863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.4e-11  Score=67.28  Aligned_cols=43  Identities=26%  Similarity=0.474  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSC--CSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCC--CCCCCC
Confidence            4556777888888888888888888888888888777  888753

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=4.4e-11  Score=65.50  Aligned_cols=42  Identities=19%  Similarity=0.463  Sum_probs=35.4

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS--GPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCC--SSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCC--CCCCC
Confidence            5566778888999999999998889999988888887  88884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.7e-11  Score=66.40  Aligned_cols=42  Identities=24%  Similarity=0.442  Sum_probs=34.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS--GPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSC--SCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCC--CCCCC
Confidence            5667778888888888888888888888888888887  88884

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.8e-11  Score=66.98  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=34.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      |++.|+++++|.|++|++.|.....|..|++.|++++  ||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSC--CSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            5566777888888888888888888888888888777  888863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=9.2e-11  Score=64.89  Aligned_cols=39  Identities=21%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             HHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        192 KAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       192 ~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      +.|++++  ||.|+.|++.|...+.|.+|+++|++++ |.|+
T Consensus         5 ~~h~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGER--GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCS--SCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCC--CcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            3456666  7777777777777777777777777777 7775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=9.5e-11  Score=63.08  Aligned_cols=37  Identities=24%  Similarity=0.525  Sum_probs=27.3

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      .|++++  ||.|+.|++.|...+.|..|+++|++++ |.|
T Consensus         4 ~h~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQR--VYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCC--CEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCC--CeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            356666  7777777777777777777777777777 766

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=3.2e-11  Score=66.76  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCC-CCCCCccccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKP-EDQIPWECEH  206 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~~~C~~  206 (243)
                      |++.|.+++||.|+.|++.|.....|..|+++|++ ++  ||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~--~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK--SGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCT--TSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCC--CCCCCC
Confidence            55667788888888888888888888888888888 77  888863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.1e-11  Score=66.09  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGES--GPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSS--SSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCC--CCCCC
Confidence            5566777888888888888888888888888888777  88774

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=4.8e-11  Score=65.35  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=36.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKS--GPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCC--CTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC--CcCCC
Confidence            5667788889999999999999999999999998888  88884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.04  E-value=6.1e-11  Score=64.21  Aligned_cols=41  Identities=20%  Similarity=0.404  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k--~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG--PSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCC--CCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCC--CCCC
Confidence            3456778888888888888888888888888888887  8877

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.9e-11  Score=64.99  Aligned_cols=41  Identities=20%  Similarity=0.369  Sum_probs=33.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      |++.|.+++||.|+.|++.|.....|..|++.|++++  ||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG--PSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCC--SSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCC--CCCC
Confidence            4556778888888888888888888888888888887  8877

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.1e-11  Score=65.95  Aligned_cols=42  Identities=21%  Similarity=0.565  Sum_probs=33.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|++.|++++  ||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK--PSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSC--CCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            4456777888888888888888888888888888877  88885

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.8e-11  Score=66.02  Aligned_cols=42  Identities=21%  Similarity=0.453  Sum_probs=34.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|+.|++.|.....|..|++.|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK--PSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCC--CCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            5566778888888888888888888888888888887  88885

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.1e-11  Score=66.34  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREK--SSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTT--CCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            4556677788888888888888888888888887777  77775

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=4.4e-11  Score=64.81  Aligned_cols=41  Identities=27%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      |++.|.+++||.|++|++.|.....|..|++.|++++  ||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG--PSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCS--STTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCC--CCCC
Confidence            4456777888888888888888888888888888887  8877

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=7.8e-11  Score=64.50  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.++++|.|++|++.|.....|..|+++|++++  ||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGES--GPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSC--CCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCC--CCCCC
Confidence            3455677788888888888888888888888888777  88774

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.4e-11  Score=66.19  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=34.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|++++||.|++|++.|.....|..|+++|++++  ||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD--PSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSC--CSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            5566778888888888888888888888888888877  88885

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.3e-11  Score=65.28  Aligned_cols=41  Identities=22%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG--PSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCS--CCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCC--CCCC
Confidence            4556777888888888888888888888888888877  8876

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=2.4e-10  Score=62.18  Aligned_cols=40  Identities=13%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      .|+++++|.|..|++.|.....|..|++.|++++  ||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDK--SGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTT--CSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCC--CccCCC
Confidence            4567788888888888888888888888888887  888863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=7.3e-11  Score=64.60  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=34.6

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |++.|.+++||.|++|++.|.....|..|+++|++++  ||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKS--GPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCC--CCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            5566778888888888888888888888888888887  88873

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.1e-10  Score=63.37  Aligned_cols=40  Identities=25%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      +.|+++++|.|++|++.|.....|..|++.|++++  ||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEK--PSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCC--CSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCC--CCCCC
Confidence            45667888888888888888888888888888887  88885

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.97  E-value=2.1e-10  Score=60.15  Aligned_cols=36  Identities=17%  Similarity=0.518  Sum_probs=31.6

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      |++.|++++  ||.|+.|++.|...+.|.+|+++|+|+
T Consensus         2 H~~~h~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIK--PFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSS--SBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCC--CccCCCCCcccCcHHHHHHHHHHhccC
Confidence            567788888  999999999999999999999999874

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.3e-10  Score=64.83  Aligned_cols=42  Identities=19%  Similarity=0.338  Sum_probs=35.6

Q ss_pred             HHhcCCCCeecc--ccccccCChhHHHHHHHHhCCCCCCCcccccc
Q psy16829        164 IKEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC  207 (243)
Q Consensus       164 ~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C  207 (243)
                      +.|.++++|.|.  .|++.|.....|..|+++|++++  ||.|+.|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK--PSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCC--SCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            456788888997  79999999999999988888888  8988877

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.2e-10  Score=64.00  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccc
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH  206 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~  206 (243)
                      ..|.++++|.|++|++.|.....|..|+++|++++  ||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK--SGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCC--CCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCC--CCCCCC
Confidence            35677888888889988888888888988888887  888863

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.9e-10  Score=62.95  Aligned_cols=41  Identities=22%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      |++.|++++||.|.+|++.|.....|..|++.|++++  ||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVS--GPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCS--CCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCC--CCCC
Confidence            5566778888888888888888888888888888877  7776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.2e-10  Score=60.47  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=32.4

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      .|.++++|.|++|++.|.....|..|++.|++++  ||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSG--PSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCS--CSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCC--CcCC
Confidence            4667888999999999999999999988888887  8887

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.92  E-value=8.6e-10  Score=58.51  Aligned_cols=35  Identities=17%  Similarity=0.423  Sum_probs=24.3

Q ss_pred             CCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCC
Q psy16829        195 KPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC  231 (243)
Q Consensus       195 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c  231 (243)
                      ++++  ||.|+.|++.|...+.|..|+++|++++ |++
T Consensus         2 ~~~k--~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPR--SYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSS--SEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCC--ceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4445  7777777777777777777777777766 654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=2.7e-11  Score=76.89  Aligned_cols=71  Identities=11%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             HHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCCCCCCCCCCCccC
Q psy16829        163 KIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIPALA  240 (243)
Q Consensus       163 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~c~~c~~~~~~  240 (243)
                      ...|++++||.|+.|++.|.....|..|+++|++++  ||.|..|.+    ...|..|+++|.|. +..-...++|++
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ek--p~~C~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~   87 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEF--QKRAKRQER----RKQLLSKQKYADGA-FADFKQESGPSS   87 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHH--HHHCCCCSC----CCCCCCCCCCCCCS-SSCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCC--Ccccchhhh----HHHHHhhhcccccc-cccccccCCCCC
Confidence            345778899999999999999999999999999888  999987664    45566777777763 333344455554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.7e-09  Score=56.71  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=25.7

Q ss_pred             hCCCCCCCccccc--ccCccCChHHHHHHHhhcCCC
Q psy16829        194 HKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       194 h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +++++  ||+|+.  |+++|...++|.+|+++|+|+
T Consensus         4 ~~gek--p~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGI--LLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCC--CEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCC--CCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45566  888875  888888888888888888875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.84  E-value=2.7e-09  Score=54.30  Aligned_cols=30  Identities=17%  Similarity=0.417  Sum_probs=23.9

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC-CC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK-HE  230 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~  230 (243)
                      ||.|+.|++.|...++|..|+++|+|++ |.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            7888888888888888888888888776 53

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=8.7e-10  Score=57.69  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|++++  ||.|+.|++.|...++|..|+++|++++
T Consensus         3 ~h~~~k--~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGR--SYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCC--CCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCC--CcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            456666  7888888888888888888887777653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.84  E-value=2.2e-09  Score=55.31  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=24.8

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |++++  ||.|+.|++.|...+.|.+|+++|++++
T Consensus         2 h~~~k--~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSS--GYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCC--SEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCC--CeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            45556  7888888888888888888888877653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=6.8e-09  Score=61.55  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             CCCCCCCcccccccCccCChHHHHHHHhhcCCCCCCCCCCCCC
Q psy16829        195 KPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGPIP  237 (243)
Q Consensus       195 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~c~~c~~~  237 (243)
                      .+++  ||.|..|++.|...+.|.+|+++|+++...+..++.+
T Consensus         9 ~~ek--py~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~~   49 (66)
T 2epp_A            9 REAG--ILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLP   49 (66)
T ss_dssp             CCCC--CCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCCC
T ss_pred             CCcc--CcCCCCCCCccCCHHHHHhhhhhhCCCccccccccCC
Confidence            3445  8888888888888888888888888776555554443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=4.6e-09  Score=61.84  Aligned_cols=38  Identities=21%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             hCCCCCCCccccc--ccCccCChHHHHHHH-hhcCCCC-CCCCC
Q psy16829        194 HKPEDQIPWECEH--CHKVYPNKRSYKRHK-QVHLGVK-HECEG  233 (243)
Q Consensus       194 h~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~~-~~c~~  233 (243)
                      +.+++  ||+|+.  |+++|...++|.+|+ ++|++++ |.|..
T Consensus        22 ~sGEK--PYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYR--PYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSC--SCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCC--CeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            34566  888865  888888888888886 5788887 77744

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.82  E-value=2.7e-09  Score=55.01  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=25.8

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |.+++  ||.|+.|++.|...+.|.+|+++|++++
T Consensus         2 H~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKR--PFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCS--CEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCc--CeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            55666  8888888888888888888888887753

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2e-10  Score=70.60  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=45.4

Q ss_pred             HHHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        131 LKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       131 l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |..|+..+-+.+++.|..|++.|. ...|..|+ .+.+++|+.|+.|++.|. ...|..|++++.++.
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            445656666677777777777773 66777777 667777777777777765 467777777776654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.6e-09  Score=54.86  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=27.0

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |.+++  ||.|+.|++.|...+.|..|+++|++++
T Consensus         4 h~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGK--PYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCC--SEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCC--CCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            56666  8888888888888888888888888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=4.1e-09  Score=54.66  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=27.7

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|.+++  ||.|+.|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGK--PFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCC--SEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCC--CccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            356666  8899999999998889999988888764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.79  E-value=4.6e-09  Score=55.60  Aligned_cols=37  Identities=14%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccc
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC  204 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C  204 (243)
                      |.+++||.|..|++.|.....|..|++.|++++  ||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR--ARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSC--TTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCc--ccee
Confidence            356788899999999999999999988888887  8765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=4.4e-09  Score=54.57  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=28.3

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|.+++  ||.|+.|++.|...+.|.+|+++|++++
T Consensus         3 ~h~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGL--LYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCC--CEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCC--CeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            356666  8999999999999999999999988764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=6.9e-09  Score=53.74  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |.+++  ||.|+.|++.|.....|.+|+++|++++
T Consensus         4 h~~~~--~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGK--THLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCS--SCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCC--CeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            55666  8999999999999999999999888764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.2e-09  Score=56.09  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=27.2

Q ss_pred             HhCCCCCCCcccccccCccCCh-HHHHHHHhhcCCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNK-RSYKRHKQVHLGVK  228 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~H~~~~  228 (243)
                      +|.+++  ||.|+.|++.|... +.|.+|+++|++++
T Consensus         3 ~h~~~k--~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGR--AMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCC--CEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCC--CeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            466666  88888888888888 88888888887763

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.3e-09  Score=56.11  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=27.7

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHH-HhhcCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGV  227 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~  227 (243)
                      .|++++  ||+|+.|+++|...+.|.+| +++|+++
T Consensus         3 ~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGH--LYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSC--EEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCc--CeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            567777  89999999999999999999 8888875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=8.1e-09  Score=53.50  Aligned_cols=33  Identities=30%  Similarity=0.557  Sum_probs=26.3

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |.+++  ||.|+.|++.|.....|..|+++|++++
T Consensus         4 ~~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGK--IFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCC--CEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCC--CEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            45555  8888888888888888888888888764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.68  E-value=1.6e-08  Score=49.38  Aligned_cols=28  Identities=29%  Similarity=0.659  Sum_probs=24.4

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            7889999999999999999999888764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1.7e-09  Score=68.52  Aligned_cols=47  Identities=11%  Similarity=0.246  Sum_probs=41.8

Q ss_pred             HHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCC-CCCCCCCCCcc
Q psy16829        191 KKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGGPIPAL  239 (243)
Q Consensus       191 ~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~c~~c~~~~~  239 (243)
                      .++|++++  ||.|+.|++.|...+.|..|+++|++++ |.|..|.+...
T Consensus        17 ~~~H~~~k--py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~~~   64 (88)
T 1x6f_A           17 NGPRLQNS--TYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQ   64 (88)
T ss_dssp             CCSCCCCS--CEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCCCC
T ss_pred             ccccCCCC--CCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhHHH
Confidence            44578888  9999999999999999999999999999 99998876544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.66  E-value=5.6e-09  Score=54.48  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=27.5

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      |++.|.+++||.|+.|++.|.....|..|++.|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            455677788888888888888888888888877653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2e-08  Score=52.60  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             hcCCCCeeccc--cccccCChhHHHHHHHHhCCCC
Q psy16829        166 EHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       166 ~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +++++||.|+.  |++.|...+.|.+|+++|++++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            46789999986  9999999999999999998763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=7.9e-09  Score=53.89  Aligned_cols=34  Identities=26%  Similarity=0.567  Sum_probs=27.9

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      .|.+++||.|..|++.|.....|..|++.|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            4667888888888888888888888888888765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.66  E-value=1.2e-08  Score=56.69  Aligned_cols=33  Identities=27%  Similarity=0.629  Sum_probs=25.1

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHh-hcCCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~  228 (243)
                      |++++  ||.|.+|++.|....+|.+|++ +|+++.
T Consensus         2 Ht~~k--p~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDK--PYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTS--CEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCc--CEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            56666  8888888888888888888888 888765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=1.8e-08  Score=59.31  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             cCCCCeeccc--cccccCChhHHHHHH-HHhCCCCCCCccccc
Q psy16829        167 HNAFPFQCEI--CHKIFTNKSTMWSHK-KAHKPEDQIPWECEH  206 (243)
Q Consensus       167 ~~~k~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~~C~~  206 (243)
                      .++|||.|..  |+++|...+.|.+|+ ++|++++  ||.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEK--P~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL--PAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC--CCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCC--Cccccc
Confidence            4677888854  888888888888886 5677777  777743

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.66  E-value=1.2e-08  Score=49.92  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            7889999999999899999988888764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.4e-08  Score=53.26  Aligned_cols=32  Identities=22%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             CCCCCCCcccc--cccCccCChHHHHHHHhhcCCCC
Q psy16829        195 KPEDQIPWECE--HCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       195 ~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ++++  ||.|+  .|+++|...++|.+|+++|++++
T Consensus         2 ~~~k--~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   35 (38)
T 1bhi_A            2 SDDK--PFLCTAPGCGQRFTNEDHLAVHKHKHEMTL   35 (38)
T ss_dssp             TTCC--CEECCCTTTCCEESSHHHHHHHHHHHHTTT
T ss_pred             CCCc--ceECCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            4455  77777  47777777777777777777665

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=1.9e-08  Score=51.59  Aligned_cols=33  Identities=18%  Similarity=0.389  Sum_probs=28.0

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |.++++|.|..|++.|.....|..|++.|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            467888899999999999899999988888765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.64  E-value=2.3e-08  Score=50.70  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=24.7

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCCCCCcc
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWE  203 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~  203 (243)
                      +||.|++|++.|.....|..|+++|++++  ||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLG--EER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTC--CCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCC--CCC
Confidence            46778888888888888888888888777  664

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.63  E-value=2.5e-08  Score=49.67  Aligned_cols=28  Identities=36%  Similarity=0.770  Sum_probs=25.2

Q ss_pred             Ccccc--cccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECE--HCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+  .|++.|...+.|..|+++|+|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            89997  89999999999999999998864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.62  E-value=2.3e-08  Score=47.98  Aligned_cols=27  Identities=26%  Similarity=0.726  Sum_probs=22.7

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ||.|+.|++.|...+.|.+|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            688999999999999999999998864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.61  E-value=2e-08  Score=52.40  Aligned_cols=33  Identities=24%  Similarity=0.459  Sum_probs=25.9

Q ss_pred             hCCCCCCCccccc--ccCccCChHHHHHHHhhcCCCC
Q psy16829        194 HKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       194 h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |++++  ||.|..  |++.|...+.|.+|+++|+|++
T Consensus         3 ~~~~k--~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKK--QHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCC--CEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCC--CCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            45666  888874  8888888888888888888764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.61  E-value=2.8e-08  Score=48.85  Aligned_cols=28  Identities=29%  Similarity=0.647  Sum_probs=23.8

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|.....|..|+++|++++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            8888888888888888888888888764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.61  E-value=2.3e-08  Score=51.31  Aligned_cols=33  Identities=33%  Similarity=0.539  Sum_probs=27.4

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |.++++|.|.+|++.|.....|..|++.|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            567888888888888888888888888888765

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.60  E-value=2.1e-08  Score=48.98  Aligned_cols=28  Identities=36%  Similarity=0.787  Sum_probs=23.8

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            7888888888888888888888888764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.58  E-value=2.2e-08  Score=48.81  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=23.8

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            7888888888888888888888888763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=7.3e-09  Score=50.78  Aligned_cols=28  Identities=32%  Similarity=0.616  Sum_probs=23.9

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|...++|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            7888899999988888999988888753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=4.1e-08  Score=47.54  Aligned_cols=26  Identities=35%  Similarity=0.773  Sum_probs=22.9

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||.|+.|++.|...+.|..|+++|+|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcCC
Confidence            88999999999999999999888875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=6.1e-08  Score=48.56  Aligned_cols=28  Identities=29%  Similarity=0.705  Sum_probs=24.8

Q ss_pred             Ccccc--cccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECE--HCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+  .|++.|...+.|..|+++|++++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            89998  89999999999999999998864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.54  E-value=3.7e-09  Score=58.57  Aligned_cols=37  Identities=24%  Similarity=0.534  Sum_probs=25.2

Q ss_pred             HHHHhCCCCCCCcccc--cccCccCChHHHHHHHhhcCCCC
Q psy16829        190 HKKAHKPEDQIPWECE--HCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |...|++++  ||.|+  .|+++|...++|.+|+++|+|++
T Consensus         9 ~~~~H~~~k--~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            9 KYVKEMPDK--TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSCEEETTT--EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHhccCCCC--CeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            334466666  77774  57777777777777777777653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.54  E-value=2.9e-09  Score=53.75  Aligned_cols=28  Identities=18%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|...++|.+|+++|++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~k   29 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVV   29 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCC
Confidence            7888888888888888888888888776

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.53  E-value=5.8e-08  Score=47.67  Aligned_cols=27  Identities=15%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ||.|+.|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            788888888888888888888888765

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=6.5e-08  Score=49.89  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      |.+++||.|+.|++.|.....|..|++.|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            56788888888888888888888888888765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=7.4e-08  Score=49.72  Aligned_cols=33  Identities=27%  Similarity=0.568  Sum_probs=27.6

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      .|.+++||.|++|++.|.....|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            356788899999999999989999998888765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.51  E-value=6.7e-08  Score=46.32  Aligned_cols=25  Identities=20%  Similarity=0.503  Sum_probs=21.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||.|+.|++.|...+.|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHcc
Confidence            7888888888888888888888774

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.51  E-value=5.9e-08  Score=47.72  Aligned_cols=28  Identities=21%  Similarity=0.660  Sum_probs=24.6

Q ss_pred             CcccccccCccCChHHHHHH-HhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRH-KQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H-~~~H~~~~  228 (243)
                      ||.|+.|++.|...+.|..| +++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            88999999999999999999 68888764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=5e-08  Score=46.87  Aligned_cols=25  Identities=28%  Similarity=0.594  Sum_probs=21.3

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||.|+.|++.|...+.|.+|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhcC
Confidence            8888888888888888888888774

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.50  E-value=7.1e-08  Score=50.46  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             hcCCCCeecc--ccccccCChhHHHHHHHHhCCCCCCCc
Q psy16829        166 EHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPW  202 (243)
Q Consensus       166 ~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~  202 (243)
                      |++++||.|.  .|++.|...+.|..|++.|++++  ||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k--~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL--KF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTT--TT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCC--CC
Confidence            3567888888  58888888888888888888877  65

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.50  E-value=5.1e-08  Score=50.24  Aligned_cols=21  Identities=14%  Similarity=0.502  Sum_probs=13.5

Q ss_pred             CcccccccCccCChHHHHHHH
Q psy16829        201 PWECEHCHKVYPNKRSYKRHK  221 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~  221 (243)
                      ||.|+.|+++|.+.++|.+|+
T Consensus         8 p~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCEETTTTEECSCHHHHHHHH
T ss_pred             CeECCCCCCccCCHhHccCcC
Confidence            666666666666666666665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=9.7e-08  Score=49.20  Aligned_cols=32  Identities=31%  Similarity=0.563  Sum_probs=25.9

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      |.++++|.|++|++.|.....|..|++.|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            45678888888888888888888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=8.3e-08  Score=49.52  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=26.6

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      |.+++||.|.+|++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            56778888888888888888888888888765

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.3e-07  Score=48.74  Aligned_cols=32  Identities=31%  Similarity=0.617  Sum_probs=26.7

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +.++++|.|+.|++.|.....|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            45678888888888888888888888888765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.85  E-value=1.8e-08  Score=49.62  Aligned_cols=28  Identities=32%  Similarity=0.872  Sum_probs=23.8

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      ||.|+.|++.|...+.|..|+++|++++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            8888889999988888888988888753

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.46  E-value=6e-08  Score=49.97  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             cCCCCeeccccccccCChhHHHHHH
Q psy16829        167 HNAFPFQCEICHKIFTNKSTMWSHK  191 (243)
Q Consensus       167 ~~~k~~~C~~C~~~f~~~~~l~~H~  191 (243)
                      .+++||.|+.|+++|...+.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4677888888888888888888887

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=6.4e-08  Score=50.31  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=26.4

Q ss_pred             HhcCCCCeeccccccccCCh-hHHHHHHHHhCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNK-STMWSHKKAHKPE  197 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~-~~l~~H~~~h~~~  197 (243)
                      .|.+++||.|+.|++.|... ..|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            35677888888888888888 8888888888765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=4.8e-08  Score=50.88  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=26.9

Q ss_pred             HhcCCCCeeccccccccCChhHHHHH-HHHhCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSH-KKAHKPE  197 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H-~~~h~~~  197 (243)
                      .|.+++||.|+.|++.|.....|..| ++.|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            46678888888888888888888888 7777754

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.78  E-value=3.2e-08  Score=47.05  Aligned_cols=25  Identities=28%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||.|+.|++.|...+.|..|+++|+
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            7888888888888888888888774

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.38  E-value=1.7e-07  Score=51.89  Aligned_cols=33  Identities=30%  Similarity=0.667  Sum_probs=27.9

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHH-HhCCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKK-AHKPED  198 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~  198 (243)
                      |++++||.|.+|++.|.....|..|++ .|+++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            578899999999999999999999999 888775

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.9e-07  Score=45.01  Aligned_cols=29  Identities=24%  Similarity=0.706  Sum_probs=24.2

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      ++||.|..|++.|.....|..|++.|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            46788888888888888888888888765

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.34  E-value=4.1e-07  Score=44.13  Aligned_cols=28  Identities=29%  Similarity=0.701  Sum_probs=22.0

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4678888888888888888888887765

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.33  E-value=2.7e-07  Score=44.83  Aligned_cols=28  Identities=25%  Similarity=0.514  Sum_probs=22.7

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4788888888888888888888888765

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.33  E-value=3.1e-07  Score=47.64  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=26.3

Q ss_pred             hcCCCCeeccc--cccccCChhHHHHHHHHhCCC
Q psy16829        166 EHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +.+++||.|.+  |++.|...+.|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46788888874  888888888888888888765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.32  E-value=2.8e-07  Score=44.75  Aligned_cols=26  Identities=31%  Similarity=0.894  Sum_probs=22.5

Q ss_pred             Ccccc--cccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECE--HCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~--~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||.|+  .|++.|...+.|..|+++|+|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            78888  899999999999999888874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.30  E-value=4.6e-07  Score=43.21  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=21.9

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ++||.|+.|++.|.....|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            467888888888888888888888764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.29  E-value=1.1e-07  Score=52.49  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             HHHHHhcCCCCeecc--ccccccCChhHHHHHHHHhCCCC
Q psy16829        161 LHKIKEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      .|...|.+++||.|.  .|++.|...+.|..|++.|++++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            344557889999995  69999999999999999988763

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=8.9e-07  Score=52.35  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=31.6

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCccccccc
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCH  208 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~  208 (243)
                      +.+++||.|..|++.|.....|..|+++|+++.   ..+..++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~---~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS---LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS---CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc---ccccccc
Confidence            456889999999999999999999999998864   3454544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.28  E-value=6.2e-07  Score=43.77  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=23.0

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      ++|.|+.|++.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            46788888888888888888888887664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=4.8e-07  Score=43.81  Aligned_cols=28  Identities=32%  Similarity=0.602  Sum_probs=22.5

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4688888888888888888888888765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=4.5e-07  Score=43.62  Aligned_cols=28  Identities=32%  Similarity=0.666  Sum_probs=22.2

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      ++||.|+.|++.|.....|..|++.|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3678888888888888888888887753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=3.7e-07  Score=43.66  Aligned_cols=27  Identities=26%  Similarity=0.650  Sum_probs=21.6

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ++||.|+.|++.|...+.|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            467888888888888888888887763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.26  E-value=4.9e-07  Score=43.76  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=21.4

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677888888888888888888777765

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.25  E-value=2.4e-08  Score=50.24  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~k   29 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVV   29 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCC
Confidence            46677777777777777777777777666

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.23  E-value=7.8e-07  Score=44.30  Aligned_cols=29  Identities=31%  Similarity=0.733  Sum_probs=22.7

Q ss_pred             CCCeecc--ccccccCChhHHHHHHHHhCCC
Q psy16829        169 AFPFQCE--ICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       169 ~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      ++||.|.  .|++.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3678887  7888888888888888888765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.52  E-value=1.8e-07  Score=45.59  Aligned_cols=28  Identities=39%  Similarity=0.730  Sum_probs=22.3

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4678888888888888888888887764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.20  E-value=7.6e-07  Score=43.99  Aligned_cols=28  Identities=39%  Similarity=0.747  Sum_probs=22.0

Q ss_pred             CCeecc--ccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCE--ICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~--~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            467786  7888888888888888888765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=2.4e-07  Score=45.37  Aligned_cols=28  Identities=25%  Similarity=0.624  Sum_probs=22.3

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5788888888888888888888887764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.15  E-value=9.4e-07  Score=42.00  Aligned_cols=26  Identities=31%  Similarity=0.843  Sum_probs=19.6

Q ss_pred             CeeccccccccCChhHHHHHHHHhCC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      ||.|..|++.|.....|..|++.|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46788888888888888888877765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.09  E-value=1.4e-06  Score=42.56  Aligned_cols=28  Identities=25%  Similarity=0.688  Sum_probs=21.4

Q ss_pred             CCeeccccccccCChhHHHHH-HHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSH-KKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H-~~~h~~~  197 (243)
                      +||.|+.|++.|.....|..| ++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            467888888888888888888 5677664

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.35  E-value=4.7e-07  Score=42.77  Aligned_cols=25  Identities=36%  Similarity=0.712  Sum_probs=19.6

Q ss_pred             CCeeccccccccCChhHHHHHHHHh
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      +||.|+.|++.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4677888888888888888887766

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.90  E-value=6e-06  Score=39.72  Aligned_cols=27  Identities=26%  Similarity=0.629  Sum_probs=21.1

Q ss_pred             CCeecc--ccccccCChhHHHHHHHHhCC
Q psy16829        170 FPFQCE--ICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       170 k~~~C~--~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            467888  888888888888888887753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00019  Score=41.97  Aligned_cols=48  Identities=19%  Similarity=0.333  Sum_probs=26.0

Q ss_pred             cccccCChhHHHHHHH-HhCCCC---C-CCcccc--cccCccCChHHHHHHHhhc
Q psy16829        177 CHKIFTNKSTMWSHKK-AHKPED---Q-IPWECE--HCHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       177 C~~~f~~~~~l~~H~~-~h~~~~---~-~~~~C~--~C~~~f~~~~~l~~H~~~H  224 (243)
                      |++.|.+...|..|+. .|.+.+   . .+|.|.  -|++.+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            5555555555555553 343332   1 156664  5666666666666666543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00017  Score=42.23  Aligned_cols=49  Identities=14%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             ccccccccChhHHHHHHH-HhcCCC------Ceecc--ccccccCChhHHHHHHHHhC
Q psy16829        147 DVCGRGFHQNNEVTLHKI-KEHNAF------PFQCE--ICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       147 ~~C~~~f~~~~~l~~H~~-~~~~~k------~~~C~--~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            359999999999999985 565554      79996  89999999999999998754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.13  E-value=0.0015  Score=46.34  Aligned_cols=145  Identities=14%  Similarity=0.114  Sum_probs=89.5

Q ss_pred             cceeeccccchhccChhhHHhhhhccCCCcccccccccccCChHHHHHHHHhhcCCCCcccCCcccccccChHHHH-HHH
Q psy16829         57 PLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLK-THK  135 (243)
Q Consensus        57 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~-~H~  135 (243)
                      +..+.|++|...|...              ..+ .||-.|-. .-+...+...     ...|+.|...+.....+. .-+
T Consensus        16 ~~~~~C~IC~~~~~~p--------------v~~-~CgH~fC~-~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~~~~   74 (170)
T 3hcs_A           16 ESKYECPICLMALREA--------------VQT-PCGHRFCK-ACIIKSIRDA-----GHKCPVDNEILLENQLFPDNFA   74 (170)
T ss_dssp             CGGGBCTTTCSBCSSE--------------EEC-TTSCEEEH-HHHHHHHHHH-----CSBCTTTCCBCCGGGCEECHHH
T ss_pred             CCCCCCCCCChhhcCc--------------EEC-CCCCHHHH-HHHHHHHHhC-----CCCCCCCccCcchhhhhhhHHH
Confidence            4458999998776533              222 35555532 2233333222     137888877655431110 001


Q ss_pred             HhhcCCCCccc--ccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCC
Q psy16829        136 KIHEKVYGVYC--DVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPN  213 (243)
Q Consensus       136 ~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~  213 (243)
                      ..........|  ..|+..+. ...+..|. ..-.-.+..|+.|+..+ ....|..|+...-..+  +..|+.|+..+. 
T Consensus        75 ~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~-~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r--~~~C~~C~~~~~-  148 (170)
T 3hcs_A           75 KREILSLMVKCPNEGCLHKME-LRHLEDHQ-AHCEFALMDCPQCQRPF-QKFHINIHILKDCPRR--QVSCDNCAASMA-  148 (170)
T ss_dssp             HHHHHTSEEECCSTTCCCEEE-GGGHHHHH-TTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTC--EEECTTTCCEEE-
T ss_pred             HHHHhhcccCCCCCCCCceec-HhHHHHHH-hcCCceeeECCCCChHH-HHHHHHHHhhhhCCCC--CeECCCCCCccC-
Confidence            11112334566  46776554 45677886 33455677899999888 6778999998888777  889999998875 


Q ss_pred             hHHHHHHHhhcCCCC
Q psy16829        214 KRSYKRHKQVHLGVK  228 (243)
Q Consensus       214 ~~~l~~H~~~H~~~~  228 (243)
                      ...|..|..++.|..
T Consensus       149 ~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          149 FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             GGGHHHHHTTCCC--
T ss_pred             HHHHHhHHHhCcChh
Confidence            567899999988865

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.10  E-value=0.00063  Score=48.32  Aligned_cols=126  Identities=18%  Similarity=0.322  Sum_probs=82.1

Q ss_pred             eeeccccchhccChhhHHhhhhccCCCcccccccccccCChH-----HHHHHHHhhcCCCCcccC--CcccccccChHHH
Q psy16829         59 LLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSD-----DRDLHFLSHLTSDGLYQC--NECEFVGKRLTHL  131 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~-----~l~~H~~~h~~~~~~~~C--~~C~~~f~~~~~l  131 (243)
                      ++.+ .||..|= ..-+...+...   ...||.|...+....     .+.+-+.     .-...|  ..|+..+. ...+
T Consensus        31 pv~~-~CgH~fC-~~Ci~~~~~~~---~~~CP~Cr~~~~~~~~~~~~~~~~~i~-----~l~v~C~n~GC~~~~~-~~~l   99 (170)
T 3hcs_A           31 AVQT-PCGHRFC-KACIIKSIRDA---GHKCPVDNEILLENQLFPDNFAKREIL-----SLMVKCPNEGCLHKME-LRHL   99 (170)
T ss_dssp             EEEC-TTSCEEE-HHHHHHHHHHH---CSBCTTTCCBCCGGGCEECHHHHHHHH-----TSEEECCSTTCCCEEE-GGGH
T ss_pred             cEEC-CCCCHHH-HHHHHHHHHhC---CCCCCCCccCcchhhhhhhHHHHHHHh-----hcccCCCCCCCCceec-HhHH
Confidence            3554 4887763 33455544321   238999988776532     2222222     223556  45776554 4567


Q ss_pred             HHHHHhhcCCCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        132 KTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       132 ~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      ..|...- .-.++.|+.|+..+ ....|..|....-..++..|+.|+..+. ...|..|...+.|+.
T Consensus       100 ~~H~~~C-~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          100 EDHQAHC-EFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             HHHHTTC-TTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC--
T ss_pred             HHHHhcC-CceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChh
Confidence            8887432 33567899999887 5668999988777888889999999884 568899999888876

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.02  E-value=0.0022  Score=43.08  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=47.2

Q ss_pred             CCCcccccccccccChhHHHHHH--HHhcCC-CCeeccc------cccccCChhHHHHHHHHhCCCCCCCcccccccCcc
Q psy16829        141 VYGVYCDVCGRGFHQNNEVTLHK--IKEHNA-FPFQCEI------CHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVY  211 (243)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~--~~~~~~-k~~~C~~------C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f  211 (243)
                      .+++.|.+|...|.+...+..|.  +.|... +.+.+..      =+..+....    +...+.+..  .|-|.+|+..|
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~C~~C~~~f  103 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDR--SKCCPVCNMTF  103 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCT--TTEETTTTEEC
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCC--CeEcCCCCCEe
Confidence            45688999999999999998887  333211 2222210      011121110    111223334  79999999999


Q ss_pred             CChHHHHHHHh
Q psy16829        212 PNKRSYKRHKQ  222 (243)
Q Consensus       212 ~~~~~l~~H~~  222 (243)
                      .+...|..|..
T Consensus       104 ~s~~~~~~H~~  114 (127)
T 1zu1_A          104 SSPVVAESHYI  114 (127)
T ss_dssp             SSHHHHHHHHT
T ss_pred             CCHHHHHHHHC
Confidence            99999999974

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.92  E-value=0.00066  Score=35.97  Aligned_cols=22  Identities=14%  Similarity=0.347  Sum_probs=20.2

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      +|.|+.|+..|.....|+.|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            7889999999999999999988

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.80  E-value=0.00026  Score=46.86  Aligned_cols=28  Identities=14%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHh
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      .|+|++  ||.|..|++.|.+.+.|..|++
T Consensus        44 d~tGek--pfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           44 DLPGGG--LHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SSGGGG--CSEETTTTEECSSHHHHHHHTT
T ss_pred             cCCCCc--ceEcccCcchhCCHHHHHHHHh
Confidence            356666  7888888888888888888865

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.09  E-value=0.0012  Score=43.67  Aligned_cols=28  Identities=14%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHH
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKA  193 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~  193 (243)
                      ++|.++|.|..|++.|.+...|..|++.
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            4566677777777777777777777654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.81  E-value=0.0075  Score=31.96  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      -+|.|+.|+..|.....|+.|++.-.++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            4567777777777777777777654433

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.72  E-value=0.013  Score=39.29  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=15.4

Q ss_pred             eeeccccchhccChhhHHhhh
Q psy16829         59 LLTCVECNEDFINVNDFVSHL   79 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~   79 (243)
                      ++.|.+|+..|.+...+..|.
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHH
Confidence            367777777777777777776

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.56  E-value=0.073  Score=26.31  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=14.0

Q ss_pred             eeccccccccCChhHHHHHHHHhC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |.||+|-+.|.+...|..|....|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcc
Confidence            556666666666666666655433

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.95  E-value=0.081  Score=26.15  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             CcccccccCccCChHHHHHHHh-hcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ-VHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~-~H~  225 (243)
                      .|.||+|-+.|.+...|..|-. .|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            6999999999999999999975 554

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.37  E-value=0.13  Score=25.52  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      ++.|..|+-+|.....+..|.+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhe
Confidence            7889999999999999999876

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.37  E-value=0.38  Score=29.42  Aligned_cols=26  Identities=31%  Similarity=0.629  Sum_probs=20.8

Q ss_pred             CcceeeccccchhccChhhHHhhhhccCC
Q psy16829         56 KPLLLTCVECNEDFINVNDFVSHLRGHDS   84 (243)
Q Consensus        56 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~   84 (243)
                      .+..+.|.+||+.|.   .|.+|+..+++
T Consensus        18 ~~d~iiClecGK~fK---~LkRHL~~~hg   43 (87)
T 2jsp_A           18 QDDHIVCLECGGSFK---SLKRHLTTHHS   43 (87)
T ss_dssp             CSSCEECTBTCCEES---BHHHHHHHTTC
T ss_pred             CCCceEecccchhhH---HHHHHHHHccC
Confidence            445589999999998   47799999655

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.72  E-value=0.23  Score=30.34  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=19.8

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      -..|-+||+.|.   .|.+|++.|+|..
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hglt   45 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHSMT   45 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTCSC
T ss_pred             ceEecccchhhH---HHHHHHHHccCCC
Confidence            467899999888   4779999877764

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=86.60  E-value=0.95  Score=24.67  Aligned_cols=46  Identities=15%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             eccccchhccChhhHHhhhhccCCCcccccccc-cccCChHHHHHHHHh
Q psy16829         61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICL-EAFPSSDDRDLHFLS  108 (243)
Q Consensus        61 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~-~~f~~~~~l~~H~~~  108 (243)
                      .|.+|.....+...|..|...-  ....||+|- ..-++.+.|+.|.+.
T Consensus         5 vC~~C~~ECET~kEl~~H~~sC--p~gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSC--INGQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHH--TTTBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             hhhHHHhhhhhHHHHHHHhccC--CCCCCCcccCcCCcCHHHHHHHHHH
Confidence            5788888888888888887654  345678874 455667777777653

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.07  E-value=1.2  Score=22.02  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=17.4

Q ss_pred             CCeeccccccccCChhHHHHHHHHh
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      ..+.|..|..+|....++..|.+.-
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CcCeeccccceehhhHHHhhhheec
Confidence            4466777777777777777776543

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=85.97  E-value=0.55  Score=29.79  Aligned_cols=12  Identities=42%  Similarity=0.871  Sum_probs=8.4

Q ss_pred             CCeecccccccc
Q psy16829        170 FPFQCEICHKIF  181 (243)
Q Consensus       170 k~~~C~~C~~~f  181 (243)
                      .||.|..||+.|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            456777777777

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.57  E-value=0.57  Score=25.58  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=16.3

Q ss_pred             eeccccchhccChhhHHhhhh
Q psy16829         60 LTCVECNEDFINVNDFVSHLR   80 (243)
Q Consensus        60 ~~C~~C~~~~~~~~~l~~H~~   80 (243)
                      -.|.+|+..|..+..++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            378888888888888888864

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=85.47  E-value=0.22  Score=26.55  Aligned_cols=12  Identities=17%  Similarity=0.802  Sum_probs=7.2

Q ss_pred             CeeccccccccC
Q psy16829        171 PFQCEICHKIFT  182 (243)
Q Consensus       171 ~~~C~~C~~~f~  182 (243)
                      .|+|.+||+.|.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            356666666654

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.87  E-value=0.37  Score=26.32  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.2

Q ss_pred             cccccccCccCChHHHHHHHh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      -.|.+|+..|..+-+|+.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            579999999999999999963

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=82.95  E-value=0.79  Score=21.45  Aligned_cols=22  Identities=18%  Similarity=0.461  Sum_probs=18.0

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      .|.|++|.....+...|+.|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            4788888888888888888854

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=82.50  E-value=1.1  Score=21.31  Aligned_cols=23  Identities=17%  Similarity=0.612  Sum_probs=17.5

Q ss_pred             eccccccccCChhHHHHHHHHhC
Q psy16829        173 QCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       173 ~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      .|.+|.+.|+...+|..|++.-+
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            47788888888888888877644

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=82.05  E-value=0.15  Score=30.31  Aligned_cols=15  Identities=33%  Similarity=0.930  Sum_probs=9.8

Q ss_pred             CCCeeccccccccCC
Q psy16829        169 AFPFQCEICHKIFTN  183 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~  183 (243)
                      +..|.||.||..|.-
T Consensus        49 ~F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           49 EFVFKCPVCGEEFYG   63 (95)
T ss_dssp             HSEEECTTTCCEEET
T ss_pred             HHhhcCCCccHHHhc
Confidence            445777777776643

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=81.82  E-value=0.53  Score=34.12  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=19.2

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK  209 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~  209 (243)
                      ..|.|..||+.+..             ..  |..||.|+.
T Consensus       170 ~~~~C~~CG~i~~g-------------~~--p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHKG-------------ED--FEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEES-------------SC--CSBCTTTCC
T ss_pred             cEEEECCCCCEEcC-------------cC--CCCCCCCCC
Confidence            46899999988751             34  889999984

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=81.56  E-value=1.2  Score=28.21  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=16.5

Q ss_pred             CcccccccccccCChHHHHHHHHhhcCCCCcccCCccccc
Q psy16829         85 TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFV  124 (243)
Q Consensus        85 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~  124 (243)
                      .+++|..||..|..            ...+|-.|+.|+..
T Consensus        66 ~p~~C~~CG~~F~~------------~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVFKA------------EINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBCCC------------CSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCeecc------------cCCCCCCCcCCCCC
Confidence            56677777777611            33456667666654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.71  E-value=0.81  Score=27.30  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             CCcccccccccccChhHHHHHHHHhcCCCCeeccccccccC
Q psy16829        142 YGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFT  182 (243)
Q Consensus       142 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~  182 (243)
                      ..|.|..|+..+. +..+..|...-.+...|.|-.|+..|.
T Consensus         9 V~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A            9 VFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             CEEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             eEEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeC
Confidence            3456666665543 345556644333334456666666665

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.50  E-value=1  Score=26.91  Aligned_cols=45  Identities=24%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             eeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHH
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH  220 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H  220 (243)
                      |.|..||-.+. +..|..|...-.+-.  .|.|-.|+..|.. ..++.|
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~--~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCE--CLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCC--EEEETTTTEEEEG-GGTTTC
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCC--cEEecccCCeeCC-CCEeCE
Confidence            55666665543 345556654433322  4666666666653 334443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-04

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
            + C+ C K FT+KS    H   H      P+ C  C K +  K     H ++H
Sbjct: 3   LYPCQ-CGKSFTHKSQRDRHMSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 149 CGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
           CG+ F   ++   H        P+ C +C K F  K  +  H K H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.73
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.61
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.42
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.39
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.38
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.34
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.31
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.3
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.25
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.2
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.2
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.17
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.12
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.12
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.08
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.07
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.06
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.06
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.05
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.05
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.03
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.99
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.92
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.86
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.84
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.78
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.77
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.75
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.63
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.62
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.51
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.48
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.31
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.3
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.24
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.23
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.19
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.17
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.16
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.1
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.05
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.03
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.97
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.92
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.84
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.76
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.75
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.7
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.68
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.56
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.55
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.5
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.47
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.42
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.39
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.29
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.22
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.21
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.11
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.09
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.08
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.07
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.05
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.05
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.92
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.8
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.77
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.63
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.46
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.38
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.37
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.29
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.23
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.1
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.06
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.89
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.57
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.53
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.25
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.22
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.14
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.03
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.99
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.59
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.24
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.21
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.9
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.81
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.63
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.37
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.2
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	91.96
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.82
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.64
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	91.38
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.31
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.23
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.8
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	86.54
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	81.36
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.06
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	80.05

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-18  Score=98.05  Aligned_cols=53  Identities=30%  Similarity=0.538  Sum_probs=50.2

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccCccCChHHHHHHHhhc
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H  224 (243)
                      +|||.|. ||+.|.....|..|+++|++++  ||.|+.|+++|...+.|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ek--py~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLR--PYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCC--SEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhcccccc--CCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899994 9999999999999999999999  999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-16  Score=88.85  Aligned_cols=53  Identities=26%  Similarity=0.494  Sum_probs=45.2

Q ss_pred             CCCcccccccccccChhHHHHHHHHhcCCCCeeccccccccCChhHHHHHHHHh
Q psy16829        141 VYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       141 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      +++|.| .||+.|.....|..|++.|++++||.|++||++|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578888 48888888888888888888888888888888888888888888765

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-14  Score=74.52  Aligned_cols=37  Identities=16%  Similarity=0.554  Sum_probs=33.6

Q ss_pred             HHHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       189 ~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +|+++|++++  ||.|+.|+++|...++|.+|+++|+||
T Consensus         2 rH~~~Ht~ek--py~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERR--RYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSC--SSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCC--CEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4778899998  999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.6e-14  Score=70.29  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=31.7

Q ss_pred             HHhCCCCCCCcccccccCccCChHHHHHHHhhcCCCCC
Q psy16829        192 KAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKH  229 (243)
Q Consensus       192 ~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  229 (243)
                      |+|+|++  ||+|.+|+++|...++|..|+++|++++|
T Consensus         1 R~HTgek--Py~C~~C~k~F~~~~~L~~H~r~H~~~~f   36 (36)
T d1x6ha2           1 RTHTGEK--PYACSHCDKTFRQKQLLDMHFKRYHDPNF   36 (36)
T ss_dssp             TTCCCCC--CEECSSSSCEESSHHHHHHHHHHTTCSSC
T ss_pred             CCCCCCC--CEECCCCCCCcCCHhHHHHhCcccCCCCC
Confidence            4688888  99999999999999999999999988764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-13  Score=67.92  Aligned_cols=33  Identities=30%  Similarity=0.683  Sum_probs=29.1

Q ss_pred             HhCCCCCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       193 ~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +|++++  ||+|..|+++|...++|.+|+++|+||
T Consensus         1 IHTgek--py~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEK--PYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCC--CEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCC--CeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478888  999999999999999999999999886

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.34  E-value=3.6e-13  Score=64.34  Aligned_cols=29  Identities=28%  Similarity=0.608  Sum_probs=26.7

Q ss_pred             CCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        200 IPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       200 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +||.|++|+++|...++|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            39999999999999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=3.3e-13  Score=68.79  Aligned_cols=35  Identities=14%  Similarity=0.501  Sum_probs=32.1

Q ss_pred             HHHHhCCCCCCCcccccccCccCChHHHHHHHhhcCC
Q psy16829        190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       190 H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      |.|.|++++  ||+|+.|+++|..+++|.+|+++|.+
T Consensus         2 h~R~HTgeK--Py~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIK--PFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSS--SBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCcc--CeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            678899999  99999999999999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.7e-13  Score=63.23  Aligned_cols=29  Identities=21%  Similarity=0.472  Sum_probs=26.4

Q ss_pred             CCcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        200 IPWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       200 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +||.|+.|+++|..+++|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            38999999999999999999999999975

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1e-12  Score=67.23  Aligned_cols=32  Identities=28%  Similarity=0.746  Sum_probs=21.4

Q ss_pred             CcccccccCccCChHHHHHHHh-hcCCCC-CCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ-VHLGVK-HECE  232 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~-~H~~~~-~~c~  232 (243)
                      ||.|..|+++|...++|.+|++ +|+|++ |.|+
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            6666666666666666666654 566666 6665

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-12  Score=66.48  Aligned_cols=37  Identities=30%  Similarity=0.633  Sum_probs=31.9

Q ss_pred             CCCCeeccccccccCChhHHHHHHH-HhCCCCCCCccccc
Q psy16829        168 NAFPFQCEICHKIFTNKSTMWSHKK-AHKPEDQIPWECEH  206 (243)
Q Consensus       168 ~~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~  206 (243)
                      .+|||.|.+||+.|...+.|.+|++ +|++++  ||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ek--py~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCC--CCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCc--CcCCcC
Confidence            4789999999999999999999976 699888  999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2e-12  Score=64.42  Aligned_cols=32  Identities=25%  Similarity=0.569  Sum_probs=26.7

Q ss_pred             hCCCCCCCcccccccCccCChHHHHHHHhhcCCC
Q psy16829        194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       194 h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      |+|++  ||+|++|++.|..+++|.+|+++|++.
T Consensus         2 ~TGek--Py~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKR--PFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCS--CEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCc--cccCCCCCCcccChHHHHHHccccCCc
Confidence            56777  888888888888888888888888764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.1e-12  Score=61.73  Aligned_cols=26  Identities=23%  Similarity=0.709  Sum_probs=23.6

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||+|+.|+++|..+++|.+|+|+|+|
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCcCEecccccccccCCCccC
Confidence            89999999999999999999999886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.6e-13  Score=67.89  Aligned_cols=37  Identities=22%  Similarity=0.526  Sum_probs=32.1

Q ss_pred             HHHHHhcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        161 LHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       161 ~H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      .|+..|++++||.|++||++|...+.|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4677888999999999999999999999999999875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.9e-12  Score=62.07  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=29.7

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      .|+++|||.|.+||++|...+.|..|+++|++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            378899999999999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5e-12  Score=63.70  Aligned_cols=33  Identities=27%  Similarity=0.557  Sum_probs=25.3

Q ss_pred             HHhCCCCCCCcccccccCccCChHHHHHHHhhcCC
Q psy16829        192 KAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       192 ~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ++|+|++  ||.|+.|+++|..+++|.+|++.+++
T Consensus         1 R~HTgek--P~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEK--PYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCC--SEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCC--CEeCCCCcccccchHHHHHHcccccC
Confidence            3578888  88888888888888888888754443

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.7e-12  Score=57.98  Aligned_cols=26  Identities=23%  Similarity=0.712  Sum_probs=22.5

Q ss_pred             CCcccccccCccCChHHHHHHHhhcC
Q psy16829        200 IPWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       200 ~~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      +||+|+.||++|...++|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            38899999999999999999998884

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.8e-11  Score=61.73  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             HHhcCCCCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       164 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +.|++++||.|.+||++|...+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            35789999999999999999999999999988653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-11  Score=58.08  Aligned_cols=28  Identities=32%  Similarity=0.667  Sum_probs=25.4

Q ss_pred             CCccccc--ccCccCChHHHHHHHhhcCCC
Q psy16829        200 IPWECEH--CHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       200 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +||.|+.  |+++|...++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            3899988  999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=2e-12  Score=69.32  Aligned_cols=40  Identities=25%  Similarity=0.520  Sum_probs=29.8

Q ss_pred             HHHHHHHHhCCCCCCCccccc--ccCccCChHHHHHHHhhcCCCC
Q psy16829        186 TMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       186 ~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|..|+. |++++  ||.|+.  |+++|...++|.+|+++|+|++
T Consensus         6 ~l~~h~~-h~gek--py~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDK--TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTT--EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCC--CeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4455663 77777  888866  8888888888888888888764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.6e-11  Score=58.10  Aligned_cols=28  Identities=25%  Similarity=0.642  Sum_probs=24.5

Q ss_pred             CCccccc--ccCccCChHHHHHHHhhcCCC
Q psy16829        200 IPWECEH--CHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       200 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      +||.|+.  |+++|...++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            3899977  999999999999999999885

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.8e-11  Score=59.67  Aligned_cols=32  Identities=34%  Similarity=0.597  Sum_probs=28.6

Q ss_pred             hcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       166 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      ++|+|||.|++|++.|...+.|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57899999999999999999999999999865

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.06  E-value=4.6e-11  Score=56.83  Aligned_cols=29  Identities=28%  Similarity=0.683  Sum_probs=25.0

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |||.|++|++.|...+.|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58888889999998899999998888874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=4.1e-11  Score=56.30  Aligned_cols=28  Identities=32%  Similarity=0.731  Sum_probs=24.4

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      +|||.|++|++.|...+.|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5889999999999999999999998875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.7e-11  Score=62.25  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=28.0

Q ss_pred             HHHHhcCCCCeeccccccccCChhHHHHHHHHhCC
Q psy16829        162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       162 H~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |.+.|+++|||.|++|++.|...+.|..|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            45677888888888888888888888888888753

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.6e-11  Score=56.93  Aligned_cols=29  Identities=34%  Similarity=0.716  Sum_probs=25.9

Q ss_pred             CCcccc--cccCccCChHHHHHHHhhcCCCC
Q psy16829        200 IPWECE--HCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       200 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +||.|+  .|+++|...++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            389995  59999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.8e-11  Score=59.70  Aligned_cols=33  Identities=33%  Similarity=0.590  Sum_probs=28.2

Q ss_pred             HhcCCCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        165 KEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       165 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      .|+|+|||.|++|++.|....+|..|++.++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            578999999999999999999999998776654

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.5e-11  Score=55.97  Aligned_cols=29  Identities=28%  Similarity=0.518  Sum_probs=24.7

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |||.|++|++.|...+.|.+|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888888888888888888888888874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.9e-11  Score=58.82  Aligned_cols=31  Identities=29%  Similarity=0.674  Sum_probs=17.1

Q ss_pred             ccccc--ccCccCChHHHHHHHhhcCCCC-CCCC
Q psy16829        202 WECEH--CHKVYPNKRSYKRHKQVHLGVK-HECE  232 (243)
Q Consensus       202 ~~C~~--C~~~f~~~~~l~~H~~~H~~~~-~~c~  232 (243)
                      |.|+.  |+++|..+++|.+|+++|+|++ |.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            44543  5555555555555555555555 5554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-10  Score=52.33  Aligned_cols=26  Identities=31%  Similarity=0.742  Sum_probs=22.6

Q ss_pred             CCeeccccccccCChhHHHHHHHHhC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |||.|.+||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68899999999999999999988874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2e-10  Score=54.26  Aligned_cols=27  Identities=26%  Similarity=0.757  Sum_probs=23.6

Q ss_pred             CCccccc--ccCccCChHHHHHHHhhcCC
Q psy16829        200 IPWECEH--CHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       200 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  226 (243)
                      +||.|+.  |+++|...++|.+|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3899977  99999999999999999876

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.7e-10  Score=55.82  Aligned_cols=32  Identities=34%  Similarity=0.639  Sum_probs=25.0

Q ss_pred             eeccc--cccccCChhHHHHHHHHhCCCCCCCcccc
Q psy16829        172 FQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECE  205 (243)
Q Consensus       172 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~  205 (243)
                      |.|+.  |++.|...+.|.+|+++|++++  ||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgek--py~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTR--DYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSC--CCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCC--CEeCC
Confidence            56765  8888888888888888888887  88875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.4e-10  Score=61.93  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=33.3

Q ss_pred             HHHHHHHHhcCCCCeeccc--cccccCChhHHHHHHHHhCCCC
Q psy16829        158 EVTLHKIKEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       158 ~l~~H~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      .+..|+. +.+++||.|.+  |++.|...+.|..|+++|++++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4455654 88999999977  9999999999999999999874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.9e-09  Score=51.35  Aligned_cols=28  Identities=25%  Similarity=0.640  Sum_probs=24.0

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      |||.|+.  |++.|...+.|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5888877  999999999999999988875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=2.5e-09  Score=51.69  Aligned_cols=27  Identities=33%  Similarity=0.827  Sum_probs=24.1

Q ss_pred             Cccccc--ccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEH--CHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~--C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ||.|+.  |+++|...++|.+|+++|+..
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            899988  999999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.6e-10  Score=51.26  Aligned_cols=26  Identities=27%  Similarity=0.635  Sum_probs=22.2

Q ss_pred             CCccccc--ccCccCChHHHHHHHhhcC
Q psy16829        200 IPWECEH--CHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       200 ~~~~C~~--C~~~f~~~~~l~~H~~~H~  225 (243)
                      +||.|+.  |+++|...++|.+|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            3888887  9999999999999998885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=51.23  Aligned_cols=28  Identities=32%  Similarity=0.680  Sum_probs=24.0

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      |||.|+.  |++.|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6888976  999999999999999988875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.9e-09  Score=49.67  Aligned_cols=29  Identities=38%  Similarity=0.728  Sum_probs=23.7

Q ss_pred             CCeecc--ccccccCChhHHHHHHHHhCCCC
Q psy16829        170 FPFQCE--ICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       170 k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +||.|+  .|++.|...+.|.+|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            578885  58888888888888888888874

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.5e-08  Score=43.72  Aligned_cols=26  Identities=38%  Similarity=0.815  Sum_probs=22.2

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      |.+|+.|++.|+.+..|..|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56788899999999999999888876

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=3e-08  Score=44.29  Aligned_cols=25  Identities=32%  Similarity=0.890  Sum_probs=23.2

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||.|.+||+.|+.+....+|.++|.
T Consensus         3 Pf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             Ccccchhhhhhhcchhhhhhhhhcc
Confidence            9999999999999999999999885

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2e-08  Score=47.25  Aligned_cols=27  Identities=22%  Similarity=0.679  Sum_probs=22.7

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHhCC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |||.|++  |++.|...+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5888876  88888888888888888875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.1e-08  Score=43.45  Aligned_cols=27  Identities=26%  Similarity=0.541  Sum_probs=23.1

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ||+|.+|.+....++.|..|+|.|+|+
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             cceeeecccccCCchheEEeeecccCc
Confidence            888888888888888888888888874

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=4.5e-08  Score=47.18  Aligned_cols=29  Identities=31%  Similarity=0.760  Sum_probs=23.4

Q ss_pred             CCCeeccc--cccccCChhHHHHHHHHhCCC
Q psy16829        169 AFPFQCEI--CHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       169 ~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      ++||.|+.  |++.|...+.|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57888876  888888888888888888753

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.3e-08  Score=45.21  Aligned_cols=26  Identities=31%  Similarity=0.689  Sum_probs=21.3

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHhC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h~  195 (243)
                      +||.|+.  |++.|...+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788876  8888888888888888875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.31  E-value=2.7e-07  Score=39.29  Aligned_cols=24  Identities=29%  Similarity=0.793  Sum_probs=21.7

Q ss_pred             cccccccCccCChHHHHHHHhhcC
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      |+|.+|.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999885

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.9e-07  Score=41.26  Aligned_cols=29  Identities=31%  Similarity=0.620  Sum_probs=25.7

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      ++||+|..|.+.-.+.+.|..|++.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57899999999999999999999999874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.4e-07  Score=41.87  Aligned_cols=26  Identities=27%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||.|++|...|..+..+.-|+|.|.|
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CcccchHHHHhhccccceEeeecccC
Confidence            67777777777777777777776665

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.4e-07  Score=39.80  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             cccccccCccCChHHHHHHHhhcCCCC
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      |.|+.|+......+-|++|+|.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888888888763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4.7e-07  Score=39.78  Aligned_cols=27  Identities=33%  Similarity=0.637  Sum_probs=22.3

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ...|..||++|.-++.|.+|+-+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            356888888888888888888888875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.1e-07  Score=40.81  Aligned_cols=29  Identities=28%  Similarity=0.604  Sum_probs=25.2

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +|||.|++|+..|..+..+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57899999999999999999999988764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.5e-07  Score=39.19  Aligned_cols=25  Identities=24%  Similarity=0.713  Sum_probs=22.6

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||+|..|.+.-...++|.+|+|+|.
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            8999999999999999999999885

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.8e-07  Score=40.45  Aligned_cols=26  Identities=31%  Similarity=0.749  Sum_probs=17.4

Q ss_pred             Cccccc--ccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEH--CHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~--C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||.|..  |++++...++|++|++.++|
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            666665  66777777777777766554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.8e-07  Score=38.93  Aligned_cols=26  Identities=35%  Similarity=0.834  Sum_probs=18.7

Q ss_pred             CeeccccccccCChhHHHHHHHHhCC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |..|++|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            35677777777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=8.4e-07  Score=39.52  Aligned_cols=27  Identities=33%  Similarity=0.684  Sum_probs=20.9

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ++||.|.+||+.|.......+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            477888888888888888888877764

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.10  E-value=9.7e-07  Score=39.08  Aligned_cols=25  Identities=44%  Similarity=0.955  Sum_probs=22.5

Q ss_pred             Cccccc--ccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEH--CHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~--C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||+|+.  |+++|+..+.|.+|.++|.
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhccC
Confidence            899987  9999999999999999873

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.8e-06  Score=39.04  Aligned_cols=27  Identities=30%  Similarity=0.676  Sum_probs=23.4

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHhCC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h~~  196 (243)
                      |||.|.+  |+++|...++|+.|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6888977  99999999999999998775

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.5e-06  Score=38.62  Aligned_cols=23  Identities=22%  Similarity=0.662  Sum_probs=21.6

Q ss_pred             CcccccccCccCChHHHHHHHhh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      ||.|..|+.+|.++.+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999974

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=3.6e-06  Score=36.34  Aligned_cols=26  Identities=42%  Similarity=0.729  Sum_probs=18.4

Q ss_pred             ccccccCccCChHHHHHHHhhcCCCC
Q psy16829        203 ECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       203 ~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      +|+.|.++|.++.-|..|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            47777777777777777777777654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.5e-06  Score=39.43  Aligned_cols=28  Identities=36%  Similarity=0.633  Sum_probs=19.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      -..|..||+.|.....|.+|.-.|.|++
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ek   32 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEK   32 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCC
Confidence            3456777777777777777766676665

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.8e-06  Score=36.93  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             eeccccccccCChhHHHHHHHHhCCCC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      |.|+.||......+-|..|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888888888764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.9e-06  Score=38.76  Aligned_cols=27  Identities=41%  Similarity=0.706  Sum_probs=15.4

Q ss_pred             eeccccccccCChhHHHHHHHHhCCCC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      ..|..||+.|.....|.+|.-.|.+++
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ek   32 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEK   32 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCC
Confidence            445555555555555555555555555

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.9e-06  Score=40.46  Aligned_cols=25  Identities=32%  Similarity=0.693  Sum_probs=22.2

Q ss_pred             CCCCCCcccccccCccCChHHHHHHHh
Q psy16829        196 PEDQIPWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       196 ~~~~~~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      |.+  ||+|..|++.|..+.++.+|..
T Consensus         2 GiK--PYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIK--PYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCC--CEECSSSCCEESCHHHHHHHHH
T ss_pred             CCC--ceeccchhhhhhhHHHHHHhhh
Confidence            455  9999999999999999999964

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=8.6e-06  Score=36.27  Aligned_cols=25  Identities=16%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||+|..|.+..+..++|..|+++.+
T Consensus         2 py~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             Cccccccccccccchhhhhhhhccc
Confidence            8999999999999999999988544

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.1e-05  Score=39.31  Aligned_cols=28  Identities=18%  Similarity=0.541  Sum_probs=22.9

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGVK  228 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~  228 (243)
                      .|+|..|++.|.+...|.-|++.|..++
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             ccCCCCCCCccCCcccccchHhhhcchH
Confidence            6888888888888888888888887654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.5e-06  Score=35.54  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=17.8

Q ss_pred             eeccccccccCChhHHHHHHHHhCCC
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      ..|.+||+.|...+.|.+|+-.|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45677777777777777777766654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.70  E-value=1.1e-05  Score=36.67  Aligned_cols=26  Identities=31%  Similarity=0.843  Sum_probs=22.3

Q ss_pred             CcccccccCccCChHHHHHHHh-hcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ-VHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~-~H~~  226 (243)
                      ||.|.+|++.|+.+.-|-+|+. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7899999999999999999974 6665

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=1.9e-05  Score=34.03  Aligned_cols=26  Identities=35%  Similarity=0.676  Sum_probs=19.8

Q ss_pred             eccccccccCChhHHHHHHHHhCCCC
Q psy16829        173 QCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       173 ~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +|+.|.+.|.++..|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57778888888888888888777763

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.3e-05  Score=35.58  Aligned_cols=26  Identities=19%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      ||+|..|..--.+.++|..|++.-+|
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            78888888888888888888765443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.6e-05  Score=33.54  Aligned_cols=26  Identities=23%  Similarity=0.609  Sum_probs=22.0

Q ss_pred             CCeeccccccccCChhHHHHHHHHhC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      +||.|..|.+.-...++|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68888888888888888888888875

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.55  E-value=1.7e-05  Score=35.19  Aligned_cols=27  Identities=30%  Similarity=0.725  Sum_probs=21.5

Q ss_pred             Cccccc--ccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEH--CHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~--C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      ||.|..  |.+.|.+...|.+|.-+|+|+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            777755  888888888888888888774

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.8e-05  Score=33.60  Aligned_cols=25  Identities=24%  Similarity=0.613  Sum_probs=22.5

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      |-+|+.|+++..++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            6789999999999999999999885

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.47  E-value=4.5e-05  Score=32.27  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=15.4

Q ss_pred             ccccccccccCChHHHHHHHHhh
Q psy16829         87 HVCDICLEAFPSSDDRDLHFLSH  109 (243)
Q Consensus        87 ~~C~~C~~~f~~~~~l~~H~~~h  109 (243)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            46666777777777776666655

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2e-05  Score=35.84  Aligned_cols=26  Identities=35%  Similarity=0.876  Sum_probs=17.7

Q ss_pred             Cccccc--ccCccCChHHHHHHH-hhcCC
Q psy16829        201 PWECEH--CHKVYPNKRSYKRHK-QVHLG  226 (243)
Q Consensus       201 ~~~C~~--C~~~f~~~~~l~~H~-~~H~~  226 (243)
                      ||.|+.  |.+.|...+.-.+|+ |+|..
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CccccCCChhhhhcchhhhhhhccccccC
Confidence            677765  777777777777776 66654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0001  Score=32.72  Aligned_cols=24  Identities=46%  Similarity=0.776  Sum_probs=13.0

Q ss_pred             cccCCcccccccChHHHHHHHHhh
Q psy16829        115 LYQCNECEFVGKRLTHLKTHKKIH  138 (243)
Q Consensus       115 ~~~C~~C~~~f~~~~~l~~H~~~~  138 (243)
                      ||.|+.|.....+.++|+.|+++.
T Consensus         2 py~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhcc
Confidence            455555555555555555555543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=7.8e-05  Score=31.51  Aligned_cols=22  Identities=23%  Similarity=0.750  Sum_probs=20.1

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      ||+|.-|...|..+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999973

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00012  Score=35.72  Aligned_cols=26  Identities=27%  Similarity=0.652  Sum_probs=22.2

Q ss_pred             cCCCCeeccccccccCChhHHHHHHH
Q psy16829        167 HNAFPFQCEICHKIFTNKSTMWSHKK  192 (243)
Q Consensus       167 ~~~k~~~C~~C~~~f~~~~~l~~H~~  192 (243)
                      ++-|||.|..|++.|-...++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            36789999999999999999998864

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00012  Score=32.46  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=22.1

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKP  196 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~  196 (243)
                      +||+|..|.....+.++|..|++.-|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            578888888888888888888887554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00029  Score=31.01  Aligned_cols=26  Identities=19%  Similarity=0.576  Sum_probs=14.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      .|.|..|...|..+-.|+-|+-.|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            45555555555555555555555554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.09  E-value=0.00027  Score=34.33  Aligned_cols=29  Identities=17%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             CCeeccccccccCChhHHHHHHHHhCCCC
Q psy16829        170 FPFQCEICHKIFTNKSTMWSHKKAHKPED  198 (243)
Q Consensus       170 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~  198 (243)
                      +.|.|.+|++.|.+...|=-|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            45777777777777777777777776554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00013  Score=33.16  Aligned_cols=27  Identities=37%  Similarity=0.739  Sum_probs=18.4

Q ss_pred             CCeeccc--cccccCChhHHHHHH-HHhCC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHK-KAHKP  196 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~-~~h~~  196 (243)
                      +||.|+.  |.+.|++.+.-..|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4677765  777777777777775 56643

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00024  Score=31.36  Aligned_cols=25  Identities=28%  Similarity=0.699  Sum_probs=20.1

Q ss_pred             CeeccccccccCChhHHHHHHHHhC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ||.|..|+..|..+.+|..|++.-.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            6788888888888888888887643

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.05  E-value=0.00023  Score=31.29  Aligned_cols=25  Identities=36%  Similarity=0.805  Sum_probs=18.8

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHh
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h  194 (243)
                      .||.|+.  |++.|...+.|.+|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3677764  888888888888887766

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00031  Score=30.91  Aligned_cols=29  Identities=24%  Similarity=0.578  Sum_probs=26.4

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +..|.|..|...|.....|+.|+..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45689999999999999999999999975

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00036  Score=33.57  Aligned_cols=25  Identities=28%  Similarity=0.624  Sum_probs=19.3

Q ss_pred             Cccc--ccccCccCChHHHHHHHhhcC
Q psy16829        201 PWEC--EHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C--~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      ||.|  +-|+.+|.+...|..|...|.
T Consensus         6 PF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           6 PFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             ceecCCCCccccccchHHHHHhhhhhe
Confidence            8888  448888888888888877664

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.80  E-value=0.00049  Score=30.38  Aligned_cols=28  Identities=36%  Similarity=0.611  Sum_probs=21.4

Q ss_pred             CCeeccc--cccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCEI--CHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~~--C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +||.|..  |.+.|.+.-.|.+|.-+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677754  888888888888888887764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.77  E-value=0.0004  Score=31.48  Aligned_cols=25  Identities=24%  Similarity=0.776  Sum_probs=19.3

Q ss_pred             CeeccccccccCChhHHHHHHHHhC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      ||.|.+|++.|..+..|.+|...-|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            6788888888888888888876543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00088  Score=28.94  Aligned_cols=22  Identities=36%  Similarity=0.815  Sum_probs=18.0

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      ||+|..||+.+-.+.+|-.|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6888888888888888888854

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00093  Score=33.78  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=23.0

Q ss_pred             CcccccccCccCChHHHHHHHhhcC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~  225 (243)
                      .|.|..|++.|.....|++|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            6899999999999999999998874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0013  Score=31.53  Aligned_cols=28  Identities=36%  Similarity=0.676  Sum_probs=23.1

Q ss_pred             CCCCeec--cccccccCChhHHHHHHHHhC
Q psy16829        168 NAFPFQC--EICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       168 ~~k~~~C--~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      .+|||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4788999  559999999988888888774

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.38  E-value=0.0014  Score=27.67  Aligned_cols=22  Identities=23%  Similarity=0.677  Sum_probs=16.4

Q ss_pred             cccccccCccCChHHHHHHHhh
Q psy16829        202 WECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       202 ~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      |.|+.|-+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6677777777777777777764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0015  Score=28.42  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             CeeccccccccCChhHHHHHHHHhC
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKAHK  195 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~h~  195 (243)
                      |-+|+.|.++..++..|+.|.+.|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4467777777777777777777664

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0024  Score=27.53  Aligned_cols=23  Identities=30%  Similarity=0.768  Sum_probs=15.6

Q ss_pred             CeeccccccccCChhHHHHHHHH
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKA  193 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~  193 (243)
                      ||.|..||+.|-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            56677777777777777776554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0017  Score=27.30  Aligned_cols=19  Identities=26%  Similarity=0.677  Sum_probs=7.4

Q ss_pred             cccccccccccChhHHHHH
Q psy16829        144 VYCDVCGRGFHQNNEVTLH  162 (243)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H  162 (243)
                      |+|..|...|..+.+|..|
T Consensus         3 ykcsscsqqfmqkkdlqsh   21 (26)
T d2dlqa1           3 YKCSSCSQQFMQKKDLQSH   21 (26)
T ss_dssp             EECSSSCCEESSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.10  E-value=0.0023  Score=28.67  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=9.4

Q ss_pred             ccCccCChHHHHHHHhhcCC
Q psy16829        207 CHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       207 C~~~f~~~~~l~~H~~~H~~  226 (243)
                      |+-.|.....|+.|+..|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            44444444444444444444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0022  Score=32.38  Aligned_cols=25  Identities=20%  Similarity=0.398  Sum_probs=22.5

Q ss_pred             CcccccccccccCChHHHHHHHHhh
Q psy16829         85 TSHVCDICLEAFPSSDDRDLHFLSH  109 (243)
Q Consensus        85 ~~~~C~~C~~~f~~~~~l~~H~~~h  109 (243)
                      ..+.|..|++.|.....|+.|...|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            4578999999999999999999888

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.003  Score=27.30  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             CcccccccCccCChHHHHHHHhh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      .|.|+.|+..-..++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            58899999999999999999873

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.57  E-value=0.0042  Score=27.79  Aligned_cols=28  Identities=18%  Similarity=0.390  Sum_probs=24.7

Q ss_pred             CCeecc--ccccccCChhHHHHHHHHhCCC
Q psy16829        170 FPFQCE--ICHKIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       170 k~~~C~--~C~~~f~~~~~l~~H~~~h~~~  197 (243)
                      +.|.|.  .|+..|.....|..|+..|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568885  4999999999999999999885

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0058  Score=28.21  Aligned_cols=26  Identities=23%  Similarity=0.643  Sum_probs=20.4

Q ss_pred             CcccccccCccCChHHHHHHHhhcCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLG  226 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~  226 (243)
                      .|.|..|+++|..+..+.+|...-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            57888888888888888888765544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.005  Score=28.84  Aligned_cols=19  Identities=16%  Similarity=0.233  Sum_probs=12.4

Q ss_pred             CccCChHHHHHHHhhcCCC
Q psy16829        209 KVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       209 ~~f~~~~~l~~H~~~H~~~  227 (243)
                      +.|.....|..|+|.|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4466666677777777664

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.22  E-value=0.0093  Score=25.06  Aligned_cols=23  Identities=39%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             eeccccccccCChhHHHHHHHHh
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      |.|++|-+.|..+.++..|.+.-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            67888988898888888888764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.011  Score=25.50  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=16.4

Q ss_pred             eeccccccccCChhHHHHHHHHh
Q psy16829        172 FQCEICHKIFTNKSTMWSHKKAH  194 (243)
Q Consensus       172 ~~C~~C~~~f~~~~~l~~H~~~h  194 (243)
                      |+|+.|+-....++.|+.|++.-
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            66777777777777777777653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0075  Score=27.81  Aligned_cols=23  Identities=22%  Similarity=0.588  Sum_probs=15.2

Q ss_pred             eeeccccchhccChhhHHhhhhc
Q psy16829         59 LLTCVECNEDFINVNDFVSHLRG   81 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~~~   81 (243)
                      .|.|..||++|..+..+.+|...
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            36677777777777777666543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.99  E-value=0.0087  Score=27.30  Aligned_cols=22  Identities=14%  Similarity=0.477  Sum_probs=18.3

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      .|.|+-||-.|.+.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            5888888888888888888865

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.014  Score=25.37  Aligned_cols=18  Identities=22%  Similarity=0.748  Sum_probs=14.9

Q ss_pred             ccCccCChHHHHHHHhhc
Q psy16829        207 CHKVYPNKRSYKRHKQVH  224 (243)
Q Consensus       207 C~~~f~~~~~l~~H~~~H  224 (243)
                      |++.|...+.+++|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            888888888888888766

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.24  E-value=0.016  Score=26.38  Aligned_cols=24  Identities=21%  Similarity=0.521  Sum_probs=16.8

Q ss_pred             cceeeccccchhccChhhHHhhhh
Q psy16829         57 PLLLTCVECNEDFINVNDFVSHLR   80 (243)
Q Consensus        57 ~~~~~C~~C~~~~~~~~~l~~H~~   80 (243)
                      +..|.|.-||-.|.+.+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            344677777777777777777764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.011  Score=32.95  Aligned_cols=26  Identities=27%  Similarity=0.599  Sum_probs=21.0

Q ss_pred             CcceeeccccchhccChhhHHhhhhc
Q psy16829         56 KPLLLTCVECNEDFINVNDFVSHLRG   81 (243)
Q Consensus        56 ~~~~~~C~~C~~~~~~~~~l~~H~~~   81 (243)
                      +...|-|..|++.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34558899999999999999999764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.015  Score=27.19  Aligned_cols=19  Identities=21%  Similarity=0.350  Sum_probs=11.2

Q ss_pred             cccCChhHHHHHHHHhCCC
Q psy16829        179 KIFTNKSTMWSHKKAHKPE  197 (243)
Q Consensus       179 ~~f~~~~~l~~H~~~h~~~  197 (243)
                      +.|.....|..|+|.|++|
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            3455666666666666653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.026  Score=30.80  Aligned_cols=39  Identities=13%  Similarity=0.328  Sum_probs=22.3

Q ss_pred             CCCcceeeccccchhccChhhHHhhhhccCCCccccccccc
Q psy16829         54 EDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLE   94 (243)
Q Consensus        54 ~~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~C~~C~~   94 (243)
                      ......|.|+.|++.|+....++.  .......|.|..|+-
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~~L--~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEANQL--FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHHH--EETTTTEEBCSSSCC
T ss_pred             cccCCceECCCCCCCcchhhHHHh--cCcCCCeEEecCCCC
Confidence            344455777777777766554443  222335566777754

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.63  E-value=0.028  Score=25.96  Aligned_cols=23  Identities=22%  Similarity=0.756  Sum_probs=11.7

Q ss_pred             CeeccccccccCChhHHHHHHHH
Q psy16829        171 PFQCEICHKIFTNKSTMWSHKKA  193 (243)
Q Consensus       171 ~~~C~~C~~~f~~~~~l~~H~~~  193 (243)
                      .|+|.+|.+.|...+++-+|..+
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHHh
Confidence            35555555555555555555444

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.068  Score=23.31  Aligned_cols=25  Identities=24%  Similarity=0.606  Sum_probs=13.4

Q ss_pred             cccccccccccChhHHHHHHHHhcC
Q psy16829        144 VYCDVCGRGFHQNNEVTLHKIKEHN  168 (243)
Q Consensus       144 ~~C~~C~~~f~~~~~l~~H~~~~~~  168 (243)
                      |.|..|++...+...+.-|....|+
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            4555555555555555555554443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.016  Score=31.36  Aligned_cols=27  Identities=19%  Similarity=0.534  Sum_probs=22.7

Q ss_pred             CcccccccCccCChHHHHHHHhhcCCC
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQVHLGV  227 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  227 (243)
                      -|.|..|+..|.+...|..|+..|..+
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhccHH
Confidence            689999999999999999998877654

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.96  E-value=0.035  Score=26.85  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=17.9

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK  209 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~  209 (243)
                      .+.|.|++||+.+.             ++.  |-.|++|+.
T Consensus         3 ~~~~~C~vCG~i~~-------------g~~--P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTAV-------------DEA--PEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEEE-------------SCC--CSBCTTTCC
T ss_pred             CcEEECCCCCCEec-------------CCC--CCcCCCCCC
Confidence            34578888887653             333  788888874

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.03  Score=31.12  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      -|-|..|++.|.+...|..|++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            4789999999999999999975

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.64  E-value=0.12  Score=25.74  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=10.9

Q ss_pred             CcccccccCccCChHHHHHHHh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~  222 (243)
                      |-.|++|+-.-.++.+|++|+.
T Consensus        24 patcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          24 PATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHH
Confidence            4445555555455555555543

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.38  E-value=0.048  Score=26.12  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             CCCeeccccccccCChhHHHHHHHHhCCCCCCCcccccccC
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK  209 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~  209 (243)
                      ++.|.|++||+...             ++.  |-+|++|+.
T Consensus         3 ~~~~vC~vCGyi~~-------------g~~--Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIHK-------------GED--FEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEEE-------------SSC--CSBCTTTCC
T ss_pred             CCEEECCCCCCEee-------------CCC--CCcCCCCCC
Confidence            45688888887653             333  778888884

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.31  E-value=0.055  Score=23.04  Aligned_cols=20  Identities=25%  Similarity=0.514  Sum_probs=13.0

Q ss_pred             cccCccCChHHHHHHHhhcC
Q psy16829        206 HCHKVYPNKRSYKRHKQVHL  225 (243)
Q Consensus       206 ~C~~~f~~~~~l~~H~~~H~  225 (243)
                      -|++.|.....|..|+-.|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            36677777777777666553

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.23  E-value=0.096  Score=24.09  Aligned_cols=23  Identities=26%  Similarity=0.722  Sum_probs=20.9

Q ss_pred             CcccccccCccCChHHHHHHHhh
Q psy16829        201 PWECEHCHKVYPNKRSYKRHKQV  223 (243)
Q Consensus       201 ~~~C~~C~~~f~~~~~l~~H~~~  223 (243)
                      .|.|.+|.+.+..-+++.+|--.
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHHh
Confidence            69999999999999999999643

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.80  E-value=0.18  Score=25.05  Aligned_cols=25  Identities=20%  Similarity=0.488  Sum_probs=12.6

Q ss_pred             CCCeeccccccccCChhHHHHHHHH
Q psy16829        169 AFPFQCEICHKIFTNKSTMWSHKKA  193 (243)
Q Consensus       169 ~k~~~C~~C~~~f~~~~~l~~H~~~  193 (243)
                      +.|-.|++|+....+..+|++|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555443

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.2  Score=23.18  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=17.8

Q ss_pred             cceeeccccchhccChhhHHhhhh
Q psy16829         57 PLLLTCVECNEDFINVNDFVSHLR   80 (243)
Q Consensus        57 ~~~~~C~~C~~~~~~~~~l~~H~~   80 (243)
                      ++.|.|+.|-+-..+...|.+|+.
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHH
Confidence            456778888777777777777764

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=0.41  Score=25.67  Aligned_cols=24  Identities=33%  Similarity=0.674  Sum_probs=14.4

Q ss_pred             cccCCcccccccChHHHHHHHHhh
Q psy16829        115 LYQCNECEFVGKRLTHLKTHKKIH  138 (243)
Q Consensus       115 ~~~C~~C~~~f~~~~~l~~H~~~~  138 (243)
                      .|+|..|...|.+...|..|+..|
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhc
Confidence            466666666666666666665554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.06  E-value=0.97  Score=19.49  Aligned_cols=21  Identities=24%  Similarity=0.673  Sum_probs=14.3

Q ss_pred             cccc--cccCccCChHHHHHHHh
Q psy16829        202 WECE--HCHKVYPNKRSYKRHKQ  222 (243)
Q Consensus       202 ~~C~--~C~~~f~~~~~l~~H~~  222 (243)
                      |.|.  .|+..|.++.++..|..
T Consensus         3 f~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHH
T ss_pred             ccccCCCcceEEeehHHHHHHHh
Confidence            5553  47777777777777753

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=80.05  E-value=0.33  Score=31.82  Aligned_cols=25  Identities=28%  Similarity=0.858  Sum_probs=21.0

Q ss_pred             eeeccccchhccChhhHHhhhhccCC
Q psy16829         59 LLTCVECNEDFINVNDFVSHLRGHDS   84 (243)
Q Consensus        59 ~~~C~~C~~~~~~~~~l~~H~~~h~~   84 (243)
                      -|+|..||+ +....+|.+||+.|..
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG~  170 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHGI  170 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTTC
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcCc
Confidence            489999998 6777899999998864