Psyllid ID: psy16862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQKKYT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHcccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHccccccccccccccccccccccHccHHHHHHHcccccHcccccccccccccc
Coil and Loop (DISEMBL)
mnntiynsLNYTYNINYtstnfsntslfptnstihihiFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVkplqypiiMNQNTVLLMLSNvwilpgiisftpimlgwyttpdhkqyrkhhpnvCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWinrtsrgeeEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQKKYT
Flexible Loop (DISEMBL)
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSsisfwipgfvmkkkkkrkkkkkkkkkkkrkkkknqhhrdvwinrtsrgeeeeekkkkkkkkkkkttkkkkrkkkrkkkknqhhrdvwqkkyt
Low Complexity Region (SEG)
MnntiynslnytyninytstnfsntslfptnstIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMkkkkkrkkkkkkkkkkkrkkkkNQHHRDVWINRTSRGeeeeekkkkkkkkkkkttkkkkrkkkrkkkkNQHHRDVWQKKYT
Disordered region (IsUnstruct)
****IYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFV**********************************************************************************
Disordered Region (DISOPRED)
********LNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKK***************************************************************VWQKKYT
Disordered Region (DISEMBL)
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM**************************RDVWINRT***********************************************
Disordered Region (DISPRO)
*********************************IHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKR***************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNTIYNSLNYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFxxxxxxxxxxxxxxxxxxxxxxxxxxHHRDVWINRTSRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKKNQHHRDVWQKKYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q4LBB6	1256	Octopamine receptor beta-	yes	N/A	0.643	0.155	0.647	1e-70
Q9VCZ3	508	Octopamine receptor beta-	no	N/A	0.686	0.409	0.576	7e-69
Q4LBB9	536	Octopamine receptor beta-	no	N/A	0.811	0.458	0.505	3e-65
P97288	388	5-hydroxytryptamine recep	yes	N/A	0.722	0.564	0.414	6e-40
O70528	388	5-hydroxytryptamine recep	yes	N/A	0.739	0.577	0.418	6e-40
Q25188	477	Octopamine receptor OS=He	N/A	N/A	0.920	0.584	0.334	2e-39
Q13639	388	5-hydroxytryptamine recep	yes	N/A	0.735	0.574	0.406	4e-39
Q62758	406	5-hydroxytryptamine recep	yes	N/A	0.722	0.539	0.401	2e-38
P07550	413	Beta-2 adrenergic recepto	no	N/A	0.775	0.569	0.351	3e-38
P42290	457	D(1B) dopamine receptor O	N/A	N/A	0.759	0.503	0.4	8e-38

>sp|Q4LBB6|OCTB3_DROME Octopamine receptor beta-3R OS=Drosophila melanogaster GN=Octbeta3R PE=2 SV=4

 Score =  266 bits (681), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/196 (64%), Positives = 151/196 (77%), Gaps = 1/196 (0%)

Query: 44  KGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSL 103
           KG +   II+ A+LGN LVIISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA V L
Sbjct: 142 KGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNASVEL 201

Query: 104 TD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           +  +W FG FMC+V+NS DVYFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV  ML
Sbjct: 202 SGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCFML 261

Query: 163 SNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM 222
           +NVWILP +ISFTPI LGWYTT +H +    HP+ C FVVN  YALISSS+SFWIPG VM
Sbjct: 262 ANVWILPALISFTPIFLGWYTTEEHLREISLHPDQCSFVVNKAYALISSSVSFWIPGIVM 321

Query: 223 KKKKKRKKKKKKKKKK 238
                R  K+  +++K
Sbjct: 322 LVMYWRIFKEAIRQRK 337

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VCZ3|OCTB1_DROME Octopamine receptor beta-1R OS=Drosophila melanogaster GN=oa2 PE=2 SV=1

 Score =  260 bits (665), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 157/208 (75%)

Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
           H+    +K  ++ FII+ AILGN+LVI+SV++HRKLRIITNYFVVSLA AD+LVALC M 
Sbjct: 103 HLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRIITNYFVVSLAVADMLVALCAMT 162

Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
           FNA V ++ +W FG  MCD+WNSFDVYFSTASI+HLCCISVDRYYAIV+PL YP+IM Q 
Sbjct: 163 FNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDYPLIMTQR 222

Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
            V +ML  VW+ P ++SF PI  GWYTT ++ +Y K +P++C F VN  YA++SSS+SFW
Sbjct: 223 RVFIMLLMVWLSPALLSFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFW 282

Query: 217 IPGFVMKKKKKRKKKKKKKKKKKRKKKK 244
           IPG VM     R  ++  ++++   + K
Sbjct: 283 IPGIVMLSMYYRIYQEADRQERLVYRSK 310

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. Octopamine does not cause Ca(2+) release in oa2-expressing cells.

Drosophila melanogaster (taxid: 7227)

>sp|Q4LBB9|OCTB2_DROME Octopamine receptor beta-2R OS=Drosophila melanogaster GN=Octbeta2R PE=2 SV=2

 Score =  248 bits (634), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/257 (50%), Positives = 165/257 (64%), Gaps = 11/257 (4%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
           ++ K  +M  III AI GNLLVIISV++ RKLR+ITNYFVVSLA AD++VA+  M FN  
Sbjct: 153 WVFKAFVMLLIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFS 212

Query: 101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
           V +T  W F  F+CD+WNS DVYFSTASILHLCCISVDRYYAIVKPL+YPI M +  V +
Sbjct: 213 VQVTGRWNFSPFLCDLWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGI 272

Query: 161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGF 220
           ML N WI P ++SF PI +GWYTTP H+Q+   +P  C FVVN YYA+ISSSISFWIP  
Sbjct: 273 MLLNTWISPALLSFLPIFIGWYTTPQHQQFVIQNPTQCSFVVNKYYAVISSSISFWIPCT 332

Query: 221 VM---KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKK-----KKK 272
           +M        R+  +++K+   R       HR    +    GE        K     + +
Sbjct: 333 IMIFTYLAIFREANRQEKQLMMRHGNAMLMHRP---SMQPSGEALSGSGSSKTLTLHEVE 389

Query: 273 KKKTTKKKKRKKKRKKK 289
           ++ T  K K   K K++
Sbjct: 390 QEHTPTKDKHLIKMKRE 406

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Drosophila melanogaster (taxid: 7227)

>sp|P97288|5HT4R_MOUSE 5-hydroxytryptamine receptor 4 OS=Mus musculus GN=Htr4 PE=1 SV=3

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 138/239 (57%), Gaps = 20/239 (8%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ VMPF AI  + D W +
Sbjct: 29  VILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWAY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W+L
Sbjct: 89  GEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVL 148

Query: 169 PGIISFTPIMLGW--YTTPDHKQYRK--HHPNV--CIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PMFISFLPIMQGWNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 KKKKKR-----KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKT 276
                R     K+  ++ +  +R    ++       +R    ++    + + + K  KT
Sbjct: 209 VLAYYRIYVTAKEHAQQIQMLQRAGATSE-------SRPQPADQHSTHRMRTETKAAKT 260

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Mus musculus (taxid: 10090)

>sp|O70528|5HT4R_CAVPO 5-hydroxytryptamine receptor 4 OS=Cavia porcellus GN=HTR4 PE=2 SV=1

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 133/234 (56%), Gaps = 10/234 (4%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ VMPF AI  + D W +
Sbjct: 29  VILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWVY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W++
Sbjct: 89  GEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVI 148

Query: 169 PGIISFTPIMLGW--YTTPDHKQYRKHHPNV----CIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK + N     C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PMFISFLPIMQGWNNIGIVDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKT 276
                R       K+  R+ +  Q        R    ++    + + + K  KT
Sbjct: 209 VLAYYR--IYVTAKEHARQIQVLQRAGAPAEGRPQPADQHSTHRMRTETKAAKT 260

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Cavia porcellus (taxid: 10141)

>sp|Q25188|OAR_HELVI Octopamine receptor OS=Heliothis virescens PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 26/305 (8%)

Query: 6   YNSLNYTYNI---NYTSTNFSNTSLFPTNSTIHIHI--FPFIIKGMLMCFIIITAILGNL 60
           Y  +NYT  +   +  +   ++   +P++  I + +  +  I   +++  III+ I+GN+
Sbjct: 12  YTLINYTEEVIEDDRDACAVADDPKYPSSFGITLAVPEWEAICTAIVLTLIIISTIVGNI 71

Query: 61  LVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF 120
           LVI+SV  ++ LRI+ N+F+VSLA ADL VA+ V+P N   S+  +W FG ++C +W + 
Sbjct: 72  LVILSVFTYKPLRIVQNFFIVSLAVADLTVAILVLPLNVAYSILGQWVFGIYVCKMWLTC 131

Query: 121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG 180
           D+   T+SIL+LC I++DRY+AI  P+ Y        VLLM+  VW+L  IIS +P +LG
Sbjct: 132 DIMCCTSSILNLCAIALDRYWAITDPINYAQKRTLERVLLMIGVVWVLSLIIS-SPPLLG 190

Query: 181 WYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM----------KKKKKRKK 230
           W   PD   +    P  C       + + SSS SF+IP  +M           KK+ R +
Sbjct: 191 WNDWPD--VFEPDTP--CRLTSQPGFVIFSSSGSFYIPLVIMTVVYFEIYLATKKRLRDR 246

Query: 231 KKKKK------KKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
            K  K       + K   K + H +D   +  +  E +   +     +KKK T+K   KK
Sbjct: 247 AKATKISTISSGQNKYNNKDDHHDQDSVSSEANHNEHQGVTRLVSDNEKKKRTRKLTPKK 306

Query: 285 KRKKK 289
           K K+K
Sbjct: 307 KPKRK 311

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Heliothis virescens (taxid: 7102)

>sp|Q13639|5HT4R_HUMAN 5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/241 (40%), Positives = 131/241 (54%), Gaps = 18/241 (7%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V   R+LR I TNYF+VSLAFADLLV++ VMPF AI  + D W +
Sbjct: 29  VILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWIY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W++
Sbjct: 89  GEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVI 148

Query: 169 PGIISFTPIMLGWYTTP--DHKQYRKHHPNV----CIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK + N     C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
                R     K+            H+   + R     E   +   +    +  T+ K  
Sbjct: 209 VLAYYRIYVTAKEHA----------HQIQMLQRAGASSESRPQSADQHSTHRMRTETKAA 258

Query: 283 K 283
           K
Sbjct: 259 K 259

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Homo sapiens (taxid: 9606)

>sp|Q62758|5HT4R_RAT 5-hydroxytryptamine receptor 4 OS=Rattus norvegicus GN=Htr4 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 137/239 (57%), Gaps = 20/239 (8%)

Query: 51  IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYF 109
           +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V  F AI  + D W++
Sbjct: 29  VILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVNAFGAIELVQDIWFY 88

Query: 110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAI-VKPLQYPIIMNQNTVLLMLSNVWIL 168
           G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M    + LML   W++
Sbjct: 89  GEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVI 148

Query: 169 PGIISFTPIMLGW--YTTPDHKQYRK--HHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
           P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA+  S ++F+IP  +M
Sbjct: 149 PMFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYAITCSVVAFYIPFLLM 208

Query: 223 KKKKKR-----KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKT 276
                R     K+  ++ +  +R    ++       +R    ++    + + + K  KT
Sbjct: 209 VLAYYRIYVTAKEHAQQIQMLQRAGATSE-------SRPQTADQHSTHRMRTETKAAKT 260

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase.

Rattus norvegicus (taxid: 10116)

>sp|P07550|ADRB2_HUMAN Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 7/242 (2%)

Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 37  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 96

Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 97  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 156

Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY    H++    + N   C F  N  YA+ SS +SF++P  +M
Sbjct: 157 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIM 215

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
                R  ++ K++ +K  K + + H    +   S+ E++       ++  K   K+ K 
Sbjct: 216 VFVYSRVFQEAKRQLQKIDKSEGRFH----VQNLSQVEQDGRTGHGLRRSSKFCLKEHKA 271

Query: 283 KK 284
            K
Sbjct: 272 LK 273

Beta-adrenergic receptors mediate the catecholamine-induced activation of adenylate cyclase through the action of G proteins. The beta-2-adrenergic receptor binds epinephrine with an approximately 30-fold greater affinity than it does norepinephrine.

Homo sapiens (taxid: 9606)

>sp|P42290|DRD5_XENLA D(1B) dopamine receptor OS=Xenopus laevis GN=drd5 PE=2 SV=1

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 134/240 (55%), Gaps = 10/240 (4%)

Query: 42  IIKGMLMCFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAI 100
           I+ G L+  +I   + GN+LV  +V++ R LR  +TN F+VSLA +DLLVAL VMP+ A+
Sbjct: 42  IVTGSLLLLLIFWTLFGNILVCTAVMRFRHLRSRVTNIFIVSLAVSDLLVALLVMPWKAV 101

Query: 101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
             +   W FG F CD+W +FD+  STASIL+LC ISVDRY+AI  P +Y   M Q   LL
Sbjct: 102 AEVAGHWPFGAF-CDIWVAFDIMCSTASILNLCVISVDRYWAISSPFRYERKMTQRVALL 160

Query: 161 MLSNVWILPGIISFTPIMLGWY--TTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 218
           M+S  W L  +ISF P+ L W+   T DH     H    C   +N  YA+ SS ISF+IP
Sbjct: 161 MISTAWALSVLISFIPVQLSWHKSETEDHL-LSNHSTGNCDSSLNRTYAISSSLISFYIP 219

Query: 219 GFVMKKKKKR-----KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKK 273
             +M     R     + + K+    +R  +  Q  R   ++  SR  +   +   KK+ K
Sbjct: 220 VAIMIVTYTRIYRIAQIQIKRISTLERAAEHAQSCRSNRVDSCSRHHQTSLRTSIKKETK 279

Dopamine receptor whose activity is mediated by G proteins which activate adenylyl cyclase.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
242022774	350	class A rhodopsin-like G-protein coupled	0.709	0.614	0.633	1e-78
270014322	398	hypothetical protein TcasGA2_TC012598, p	0.927	0.706	0.513	5e-77
328705267	454	PREDICTED: octopamine receptor beta-3R-l	0.811	0.541	0.547	3e-76
189241144	376	PREDICTED: similar to Octopamine recepto	0.679	0.547	0.666	9e-74
157111761	384	beta adrenergic receptor [Aedes aegypti]	0.673	0.531	0.627	1e-70
332025956	418	Octopamine receptor beta-1R [Acromyrmex	0.838	0.607	0.482	1e-70
347968755	1230	AGAP002888-PC [Anopheles gambiae str. PE	0.782	0.192	0.583	2e-70
383862143	428	PREDICTED: octopamine receptor beta-1R-l	0.838	0.593	0.490	4e-70
195450841	1230	GK13570 [Drosophila willistoni] gi|19416	0.739	0.182	0.586	5e-70
350413453	427	PREDICTED: octopamine receptor beta-1R-l	0.838	0.594	0.490	6e-70

>gi|242022774|ref|XP_002431813.1| class A rhodopsin-like G-protein coupled receptor GPRoar4, putative [Pediculus humanus corporis] gi|212517145|gb|EEB19075.1| class A rhodopsin-like G-protein coupled receptor GPRoar4, putative [Pediculus humanus corporis]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/224 (63%), Positives = 170/224 (75%), Gaps = 9/224 (4%)

Query: 36  IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVM 95
           + + P I+KG +M  II+TA+LGN+LVIISVI+HRKLR+ITNY+VVSLA ADLLVALC M
Sbjct: 77  VPVVPAIVKGFIMGTIIVTAVLGNILVIISVIRHRKLRVITNYYVVSLAMADLLVALCAM 136

Query: 96  PFNAIVSLTDE-WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMN 154
            FNA V LT+  W FGYFMCDV+NS DVYFSTASILHLCCISVDRYYAIV+PLQYPI M 
Sbjct: 137 TFNASVELTNGMWLFGYFMCDVYNSLDVYFSTASILHLCCISVDRYYAIVRPLQYPITMT 196

Query: 155 QNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSIS 214
             TV  ML+NVWILP +ISFTPI LGWYTT +H+++R+ +P VCIFVVN YYALISS +S
Sbjct: 197 HRTVTFMLANVWILPALISFTPIFLGWYTTEEHQEFRRTNPKVCIFVVNKYYALISSGVS 256

Query: 215 FWIPGFVM--------KKKKKRKKKKKKKKKKKRKKKKNQHHRD 250
           FWIPG VM        K+  +++K   +          +QH R 
Sbjct: 257 FWIPGVVMIIMYYKIYKEAVRQRKALSRTSSNIVLNSIHQHRRQ 300

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014322|gb|EFA10770.1| hypothetical protein TcasGA2_TC012598, partial [Tribolium castaneum]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 156/304 (51%), Positives = 196/304 (64%), Gaps = 23/304 (7%)

Query: 10  NYTYNINYTSTNF--------SNTSLFPTNSTIHIH---IFPFIIKGMLMCFIIITAILG 58
           +++  +  TSTN         SN +   T    H H   +   I+KG +   II++A+LG
Sbjct: 3   SFSATLTATSTNLPSVLQNGTSNDTNVATVGNPHPHWTELLLLIVKGFIFGTIIVSAVLG 62

Query: 59  NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD-EWYFGYFMCDVW 117
           N LVIISV +HRKLR+ITNY+VVSLA AD+LVALC M FNA V LT  +W FGYFMCDVW
Sbjct: 63  NALVIISVHRHRKLRVITNYYVVSLAMADMLVALCAMTFNASVELTGGKWLFGYFMCDVW 122

Query: 118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPI 177
           NS DVYFSTASILHLCCISVDRYYAIV+PL+YPI M   TV  ML+NVW LP +ISFTPI
Sbjct: 123 NSLDVYFSTASILHLCCISVDRYYAIVRPLEYPITMTHRTVSFMLANVWTLPALISFTPI 182

Query: 178 MLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK 237
            LGWYTT DH  +RK +PNVC FVVN YYALISSSISFWIPG VM     R  K+  +++
Sbjct: 183 FLGWYTTEDHIDFRKTNPNVCKFVVNQYYALISSSISFWIPGIVMVTMYCRIYKEAIRQR 242

Query: 238 KKRKKKKN--------QH---HRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKR 286
           K   +  +        QH   +RD + +      + E     +   ++ T+ +++ K  R
Sbjct: 243 KALSRTSSNIILNSIHQHRTSYRDRYGDHFLHPSDGELTTVGQINGRRSTSIRQQSKSWR 302

Query: 287 KKKK 290
            + K
Sbjct: 303 AEHK 306

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705267|ref|XP_001948521.2| PREDICTED: octopamine receptor beta-3R-like [Acyrthosiphon pisum]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/254 (54%), Positives = 172/254 (67%), Gaps = 8/254 (3%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
            +IK + MC II+ A+LGN LV+ISV++HRKLRI+TNY+VVSLAFAD LVALC M FNA 
Sbjct: 108 LVIKTVAMCSIILCAVLGNALVVISVVRHRKLRILTNYYVVSLAFADFLVALCAMSFNAS 167

Query: 101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
           V +T +W FGY MCDVWNS DVYFSTASILHLCCISVDRYYAIV PLQYPI M Q TVL 
Sbjct: 168 VEITGKWMFGYVMCDVWNSLDVYFSTASILHLCCISVDRYYAIVSPLQYPITMTQRTVLY 227

Query: 161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGF 220
           ML NVW LP +ISF PI  GWYTT +H+ +R+ +P  C+FVVN YYA+ISSS+SFWIPG 
Sbjct: 228 MLLNVWTLPALISFLPIFFGWYTTAEHQAFRRKNPMSCVFVVNRYYAIISSSVSFWIPGV 287

Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKN--------QHHRDVWINRTSRGEEEEEKKKKKKKK 272
           VM     R  K+  ++++   +  +        QH    + +R    + E          
Sbjct: 288 VMIVMYYRIYKEAVRQRQALSRTSSNIILNSIHQHRVQHYSHRLRPPDSENMSNGNVTTA 347

Query: 273 KKKTTKKKKRKKKR 286
           K  T+ + + K  R
Sbjct: 348 KTSTSWRTEHKAAR 361

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241144|ref|XP_974238.2| PREDICTED: similar to Octopamine receptor beta-3R (DmOct-beta-3R) [Tribolium castaneum]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 138/207 (66%), Positives = 160/207 (77%), Gaps = 1/207 (0%)

Query: 41  FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
            I+KG +   II++A+LGN LVIISV +HRKLR+ITNY+VVSLA AD+LVALC M FNA 
Sbjct: 43  LIVKGFIFGTIIVSAVLGNALVIISVHRHRKLRVITNYYVVSLAMADMLVALCAMTFNAS 102

Query: 101 VSLTD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVL 159
           V LT  +W FGYFMCDVWNS DVYFSTASILHLCCISVDRYYAIV+PL+YPI M   TV 
Sbjct: 103 VELTGGKWLFGYFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPITMTHRTVS 162

Query: 160 LMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPG 219
            ML+NVW LP +ISFTPI LGWYTT DH  +RK +PNVC FVVN YYALISSSISFWIPG
Sbjct: 163 FMLANVWTLPALISFTPIFLGWYTTEDHIDFRKTNPNVCKFVVNQYYALISSSISFWIPG 222

Query: 220 FVMKKKKKRKKKKKKKKKKKRKKKKNQ 246
            VM     R  K+  +++K   +  + 
Sbjct: 223 IVMVTMYCRIYKEAIRQRKALSRTSSN 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111761|ref|XP_001651715.1| beta adrenergic receptor [Aedes aegypti]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 155/204 (75%)

Query: 43  IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           +K ++   III A+LGN LVIISV K+RKLR+ITNYFVVSLA AD++VALC M FNA V 
Sbjct: 96  MKSLIFGSIIIGAVLGNALVIISVHKNRKLRVITNYFVVSLAMADIMVALCAMTFNASVE 155

Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L+  W FG FMCDVWNS DVYFSTASILHLCCISVDRY+AIV+PL+YP+ M   TV  ML
Sbjct: 156 LSGRWLFGPFMCDVWNSLDVYFSTASILHLCCISVDRYFAIVRPLEYPLYMTHRTVGFML 215

Query: 163 SNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM 222
           +NVW+LP +ISFTPI LGWYTT +H +  K +P +C+FVVN  YALISSSISFWIPG VM
Sbjct: 216 ANVWMLPALISFTPIFLGWYTTAEHLETLKDNPEMCVFVVNKAYALISSSISFWIPGIVM 275

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQ 246
                R  K+  +++K   +  + 
Sbjct: 276 VTMYYRIFKEAVRQRKALSRTSSN 299

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025956|gb|EGI66112.1| Octopamine receptor beta-1R [Acromyrmex echinatior]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/263 (48%), Positives = 177/263 (67%), Gaps = 9/263 (3%)

Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
           ++    +K  +M FII+ A+LGNLLVI+SV++HRKLR+ITNYFVVSLA AD+LVAL  M 
Sbjct: 36  YVLLLTLKAFIMIFIILCALLGNLLVIVSVMRHRKLRVITNYFVVSLALADMLVALFAMT 95

Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
           FNA V L   W FGYFMCDVWNS DV+FST SILHLCCISVDRYYAIV+PL YP+IM   
Sbjct: 96  FNASVELFGRWLFGYFMCDVWNSLDVFFSTVSILHLCCISVDRYYAIVQPLDYPLIMTNV 155

Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
            +  MLS VW  P ++SF PI  GWYTT +H +YR+++P++C+F VN +YA++SS +SFW
Sbjct: 156 RLGTMLSVVWCFPTVMSFLPIFAGWYTTNEHLEYRRNYPDICVFQVNKFYAVVSSCVSFW 215

Query: 217 IPGFVMKK---KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRG------EEEEEKKK 267
           +PG +M     K  R+  ++++   + K      ++ + IN  S G       ++   + 
Sbjct: 216 VPGIIMIAMYYKIYREADRQERMLYRSKVAAALLNKHLQINGISAGLTSLPTVDQSSPEP 275

Query: 268 KKKKKKKKTTKKKKRKKKRKKKK 290
           ++  ++   T   K K++RK  +
Sbjct: 276 QQVAEEPPITSSSKMKRERKAAR 298

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968755|ref|XP_003436282.1| AGAP002888-PC [Anopheles gambiae str. PEST] gi|333467858|gb|EGK96732.1| AGAP002888-PC [Anopheles gambiae str. PEST]

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 143/245 (58%), Positives = 172/245 (70%), Gaps = 8/245 (3%)

Query: 20  TNFSNTSLFPTNSTI------HIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLR 73
           TN  N ++ PT STI       + +    +K ++   III A+LGN LVIISV K+RKLR
Sbjct: 89  TNAVNLTV-PTASTIVEPADRLVELTVLCLKSLIFGSIIIGAVLGNALVIISVHKNRKLR 147

Query: 74  IITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLC 133
           +ITNYFVVSLA AD+LVALC M FNA V L+  W FG FMCDVWNS DVYFSTASILHLC
Sbjct: 148 VITNYFVVSLAMADMLVALCAMTFNASVELSGRWLFGSFMCDVWNSLDVYFSTASILHLC 207

Query: 134 CISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH 193
           CISVDRY+AIV+PL+YP+ M Q TV  ML+NVW+LP +ISFTPI LGWYTT +H    K 
Sbjct: 208 CISVDRYFAIVRPLEYPLYMTQRTVFFMLANVWVLPALISFTPIFLGWYTTAEHLAALKI 267

Query: 194 HPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKR-KKKKKKKKKKKRKKKKNQHHRDVW 252
           +P++CIFVVN  YA+ISSSISFWIPG VM     R  K+  +++K   +   N     V 
Sbjct: 268 NPDLCIFVVNKSYAIISSSISFWIPGIVMVTMYYRIYKEAVRQRKALSRTSSNILLNSVQ 327

Query: 253 INRTS 257
           IN  S
Sbjct: 328 INNAS 332

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862143|ref|XP_003706543.1| PREDICTED: octopamine receptor beta-1R-like [Megachile rotundata]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 173/261 (66%), Gaps = 7/261 (2%)

Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
           ++    +K  +M FIII A+ GNLLVI+SV++HRKLR+ITNYFVVSLA AD+LVA+  M 
Sbjct: 48  YVLLLTLKATVMAFIIICALFGNLLVIVSVMRHRKLRVITNYFVVSLALADMLVAIFAMT 107

Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
           FNA V L+  W FGYFMCDVWNS DV+FST SILHLCCISVDRYYAIV+PL YP+IM   
Sbjct: 108 FNASVELSGRWLFGYFMCDVWNSLDVFFSTVSILHLCCISVDRYYAIVQPLDYPLIMTNL 167

Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
            +  MLS VW  P ++SF PI  GWYTT  H +YR+++P+VC+F VN  YA+ISSS+SFW
Sbjct: 168 RLSTMLSVVWCSPTVMSFLPIFAGWYTTEKHLEYRRNYPDVCVFQVNKLYAVISSSVSFW 227

Query: 217 IPGFVMKK---KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRG----EEEEEKKKKK 269
           +PG +M     K  R+  ++++   + K      ++ + IN  S G       ++     
Sbjct: 228 VPGIIMIAMYYKIYREADRQERMLYRSKVAAALLNKHLQINGISAGLTTLPTVDQSSPDP 287

Query: 270 KKKKKKTTKKKKRKKKRKKKK 290
           + +    T   K +++RK  +
Sbjct: 288 QPEDPPITSSSKMRRERKAAR 308

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450841|ref|XP_002072656.1| GK13570 [Drosophila willistoni] gi|194168741|gb|EDW83642.1| GK13570 [Drosophila willistoni]

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 135/230 (58%), Positives = 163/230 (70%), Gaps = 6/230 (2%)

Query: 10  NYTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKH 69
           N T N+N T     N  + P      +     I+KG +   II+ A+LGN LVIISV ++
Sbjct: 99  NITPNVNTT-----NVLIEPDPDDSWLDTSLLILKGFIFSSIILAAVLGNALVIISVQRN 153

Query: 70  RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD-EWYFGYFMCDVWNSFDVYFSTAS 128
           RKLR+ITNYFVVSLA AD+LVALC M FNA V L+  +W FG FMC+V+NS DVYFSTAS
Sbjct: 154 RKLRVITNYFVVSLAMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDVYFSTAS 213

Query: 129 ILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK 188
           ILHLCCISVDRYYAIV+PL+YP+ M   TV  ML+NVWILP +ISFTPI LGWYTT +H 
Sbjct: 214 ILHLCCISVDRYYAIVRPLEYPLNMTHKTVCFMLANVWILPALISFTPIFLGWYTTAEHL 273

Query: 189 QYRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKK 238
           +    HP+ C FVVN  YALISSS+SFWIPG VM     R  K+  +++K
Sbjct: 274 REISLHPDQCSFVVNKAYALISSSVSFWIPGIVMLVMYWRIFKEAVRQRK 323

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413453|ref|XP_003489997.1| PREDICTED: octopamine receptor beta-1R-like [Bombus impatiens]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 172/261 (65%), Gaps = 7/261 (2%)

Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
           H     +K M+M FII+ A+ GNLLVI+SV++HRKLR+ITNYFVVSLA AD+LVA+  M 
Sbjct: 47  HAILLTVKAMVMGFIILCALFGNLLVIVSVMRHRKLRVITNYFVVSLALADMLVAIFAMT 106

Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
           FNA V L+  W FGYFMCDVWNS DV+FST SILHLCCISVDRYYAIV+PL YP+IM   
Sbjct: 107 FNASVELSGRWLFGYFMCDVWNSLDVFFSTVSILHLCCISVDRYYAIVQPLDYPLIMTNL 166

Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
            +  MLS VW  P ++SF PI  GWYTT  H ++R++ P+VC+F VN  YA+ISSS+SFW
Sbjct: 167 RLSTMLSVVWCSPTVMSFLPIFAGWYTTEKHLEFRRNFPDVCVFQVNKLYAVISSSVSFW 226

Query: 217 IPGFVMKK---KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRG----EEEEEKKKKK 269
           +PG +M     K  R+  ++++   + K      ++ + IN  S G       ++     
Sbjct: 227 LPGIIMIAMYYKIYREADRQERMLYRSKVAAALLNKHLQINGISAGLTTLPTVDQSSPDP 286

Query: 270 KKKKKKTTKKKKRKKKRKKKK 290
           + +    T   K +++RK  +
Sbjct: 287 QPEDPPITSSSKMRRERKAAR 307

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
FB|FBgn0038980	508	oa2 "octopamine receptor 2" [D	0.613	0.366	0.634	7.6e-64
FB|FBgn0250910	1256	Octbeta3R "Octbeta3R" [Drosoph	0.597	0.144	0.681	5.2e-63
FB|FBgn0038063	536	Octbeta2R "Octbeta2R" [Drosoph	0.600	0.339	0.642	2.1e-61
UNIPROTKB|F1LM90	398	Htr4 "5-hydroxytryptamine rece	0.607	0.462	0.487	2.9e-39
UNIPROTKB|F1LM98	379	Htr4 "5-hydroxytryptamine rece	0.607	0.485	0.487	2.9e-39
MGI|MGI:109246	388	Htr4 "5 hydroxytryptamine (ser	0.607	0.474	0.492	7.8e-39
UNIPROTKB|F1NJL4	371	HTR4 "Uncharacterized protein"	0.590	0.482	0.484	1.3e-38
UNIPROTKB|E2RK32	360	HTR4 "Uncharacterized protein"	0.607	0.511	0.487	2.1e-38
UNIPROTKB|C4WYH4	411	HTR4 "5-hydroxytryptamine (Ser	0.607	0.447	0.482	4.3e-38
UNIPROTKB|E5RK45	371	HTR4 "5-hydroxytryptamine rece	0.607	0.495	0.482	4.3e-38

FB|FBgn0038980 oa2 "octopamine receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 118/186 (63%), Positives = 148/186 (79%)

Query:    37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
             H+    +K  ++ FII+ AILGN+LVI+SV++HRKLRIITNYFVVSLA AD+LVALC M 
Sbjct:   103 HLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRIITNYFVVSLAVADMLVALCAMT 162

Query:    97 FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
             FNA V ++ +W FG  MCD+WNSFDVYFSTASI+HLCCISVDRYYAIV+PL YP+IM Q 
Sbjct:   163 FNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDYPLIMTQR 222

Query:   157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
              V +ML  VW+ P ++SF PI  GWYTT ++ +Y K +P++C F VN  YA++SSS+SFW
Sbjct:   223 RVFIMLLMVWLSPALLSFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFW 282

Query:   217 IPGFVM 222
             IPG VM
Sbjct:   283 IPGIVM 288

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0004989 "octopamine receptor activity" evidence=IDA

GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=IDA

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

FB|FBgn0250910 Octbeta3R "Octbeta3R" [Drosophila melanogaster (taxid:7227)]

 Score = 653 (234.9 bits), Expect = 5.2e-63, P = 5.2e-63
 Identities = 124/182 (68%), Positives = 146/182 (80%)

Query:    42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV 101
             ++KG +   II+ A+LGN LVIISV ++RKLR+ITNYFVVSLA AD+LVALC M FNA V
Sbjct:   140 LLKGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNASV 199

Query:   102 SLTD-EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
              L+  +W FG FMC+V+NS DVYFSTASILHLCCISVDRYYAIV+PL+YP+ M   TV  
Sbjct:   200 ELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCF 259

Query:   161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGF 220
             ML+NVWILP +ISFTPI LGWYTT +H +    HP+ C FVVN  YALISSS+SFWIPG 
Sbjct:   260 MLANVWILPALISFTPIFLGWYTTEEHLREISLHPDQCSFVVNKAYALISSSVSFWIPGI 319

Query:   221 VM 222
             VM
Sbjct:   320 VM 321

GO:0016021 "integral to membrane" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004989 "octopamine receptor activity" evidence=IDA

FB|FBgn0038063 Octbeta2R "Octbeta2R" [Drosophila melanogaster (taxid:7227)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 117/182 (64%), Positives = 140/182 (76%)

Query:    41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAI 100
             ++ K  +M  III AI GNLLVIISV++ RKLR+ITNYFVVSLA AD++VA+  M FN  
Sbjct:   153 WVFKAFVMLLIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFS 212

Query:   101 VSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLL 160
             V +T  W F  F+CD+WNS DVYFSTASILHLCCISVDRYYAIVKPL+YPI M +  V +
Sbjct:   213 VQVTGRWNFSPFLCDLWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGI 272

Query:   161 MLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGF 220
             ML N WI P ++SF PI +GWYTTP H+Q+   +P  C FVVN YYA+ISSSISFWIP  
Sbjct:   273 MLLNTWISPALLSFLPIFIGWYTTPQHQQFVIQNPTQCSFVVNKYYAVISSSISFWIPCT 332

Query:   221 VM 222
             +M
Sbjct:   333 IM 334

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004989 "octopamine receptor activity" evidence=IDA

GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP

UNIPROTKB|F1LM90 Htr4 "5-hydroxytryptamine receptor 4" [Rattus norvegicus (taxid:10116)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 95/195 (48%), Positives = 126/195 (64%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:     6 FGSVEKVVLLTFFAMVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 65

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W++G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    66 MPFGAIELVQDIWFYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 125

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRK--HHPN--VCIFVVNVYYA 207
                 + LML   W++P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA
Sbjct:   126 TPLRIALMLGGCWVIPMFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYA 185

Query:   208 LISSSISFWIPGFVM 222
             +  S ++F+IP  +M
Sbjct:   186 ITCSVVAFYIPFLLM 200

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1LM98 Htr4 "5-hydroxytryptamine receptor 4" [Rattus norvegicus (taxid:10116)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 95/195 (48%), Positives = 126/195 (64%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:     6 FGSVEKVVLLTFFAMVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 65

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W++G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    66 MPFGAIELVQDIWFYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 125

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRK--HHPN--VCIFVVNVYYA 207
                 + LML   W++P  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA
Sbjct:   126 TPLRIALMLGGCWVIPMFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYA 185

Query:   208 LISSSISFWIPGFVM 222
             +  S ++F+IP  +M
Sbjct:   186 ITCSVVAFYIPFLLM 200

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:109246 Htr4 "5 hydroxytryptamine (serotonin) receptor 4" [Mus musculus (taxid:10090)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 96/195 (49%), Positives = 125/195 (64%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FRSVEKVVLLTFLAVVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDIWAYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRK--HHPNV--CIFVVNVYYA 207
                 + LML   W+LP  ISF PIM GW      D  + RK  H+ N   C+F+VN  YA
Sbjct:   134 TPLRIALMLGGCWVLPMFISFLPIMQGWNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYA 193

Query:   208 LISSSISFWIPGFVM 222
             +  S ++F+IP  +M
Sbjct:   194 ITCSVVAFYIPFLLM 208

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=ISO

GO:0007268 "synaptic transmission" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030816 "positive regulation of cAMP metabolic process" evidence=IEA

GO:0032098 "regulation of appetite" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0050890 "cognition" evidence=IEA

UNIPROTKB|F1NJL4 HTR4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 92/190 (48%), Positives = 122/190 (64%)

Query:    44 KGMLMCFI---IITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCVMPFNA 99
             K +L+ FI   I+ AILGNLLV+++V + R+LR I TNYF+VSLAFADLLV++ VMPF A
Sbjct:    11 KIVLLTFISAVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGA 70

Query:   100 IVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIMNQNTV 158
             I  + D W +G   C V  S DV  +TASILHLCCIS+DRYYAI  +PL Y   M    +
Sbjct:    71 IELVQDNWIYGEMFCLVRTSLDVLLTTASILHLCCISLDRYYAICCQPLVYRNKMTPLRI 130

Query:   159 LLMLSNVWILPGIISFTPIMLGWYTTP-----DHKQYRK-HHPNVCIFVVNVYYALISSS 212
              +ML   W++P  ISF PIM GW +         +Q+ K  +   CIF+VN  YA+  S 
Sbjct:   131 AVMLGGCWVIPTFISFLPIMQGWNSIGIIDLIQQRQFNKASNSTYCIFMVNKPYAITCSV 190

Query:   213 ISFWIPGFVM 222
             ++F+ P  +M
Sbjct:   191 VAFYFPFLLM 200

GO:0016021 "integral to membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

UNIPROTKB|E2RK32 HTR4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 95/195 (48%), Positives = 123/195 (63%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V + R+LR I TNYF+VSLAF DLLV++ V
Sbjct:    15 FGSVEKVVLLTFLSAVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFVDLLVSVLV 74

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    75 MPFGAIELVQDIWIYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 134

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRKHHPN----VCIFVVNVYYA 207
                 + LML   WI+P  ISF PIM GW      D  + RK + N     CIF+VN  YA
Sbjct:   135 TPLRIALMLGGCWIIPMFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCIFMVNKPYA 194

Query:   208 LISSSISFWIPGFVM 222
             +  S ++F+IP  +M
Sbjct:   195 ITCSVVAFYIPFLLM 209

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

UNIPROTKB|C4WYH4 HTR4 "5-hydroxytryptamine (Serotonin) receptor 4" [Homo sapiens (taxid:9606)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 94/195 (48%), Positives = 123/195 (63%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V   R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FGSVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDIWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRKHHPN----VCIFVVNVYYA 207
                 + LML   W++P  ISF PIM GW      D  + RK + N     C+F+VN  YA
Sbjct:   134 TPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYA 193

Query:   208 LISSSISFWIPGFVM 222
             +  S ++F+IP  +M
Sbjct:   194 ITCSVVAFYIPFLLM 208

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E5RK45 HTR4 "5-hydroxytryptamine receptor 4" [Homo sapiens (taxid:9606)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 94/195 (48%), Positives = 123/195 (63%)

Query:    39 FPFIIKGMLMCF---IIITAILGNLLVIISVIKHRKLRII-TNYFVVSLAFADLLVALCV 94
             F  + K +L+ F   +I+ AILGNLLV+++V   R+LR I TNYF+VSLAFADLLV++ V
Sbjct:    14 FGSVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLV 73

Query:    95 MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV-KPLQYPIIM 153
             MPF AI  + D W +G   C V  S DV  +TASI HLCCIS+DRYYAI  +PL Y   M
Sbjct:    74 MPFGAIELVQDIWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKM 133

Query:   154 NQNTVLLMLSNVWILPGIISFTPIMLGWYTTP--DHKQYRKHHPN----VCIFVVNVYYA 207
                 + LML   W++P  ISF PIM GW      D  + RK + N     C+F+VN  YA
Sbjct:   134 TPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYA 193

Query:   208 LISSSISFWIPGFVM 222
             +  S ++F+IP  +M
Sbjct:   194 ITCSVVAFYIPFLLM 208

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4LBB6	OCTB3_DROME	No assigned EC number	0.6479	0.6435	0.1552	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	303
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	4e-42
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	3e-14
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	1e-12
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-08
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-08
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-08
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-07
PLN02967	581	PLN02967, PLN02967, kinase	1e-07
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-07
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	5e-07
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	5e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-07
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	9e-07
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-06
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-06
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	1e-06
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	1e-06
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	2e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	4e-06
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	5e-06
pfam03343	603	pfam03343, SART-1, SART-1 family	6e-06
TIGR02794	346	TIGR02794, tolA_full, TolA protein	8e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-05
pfam10328	275	pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR	1e-05
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	3e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	3e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	3e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	3e-05
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	4e-05
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	5e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	5e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-05
PRK05244	177	PRK05244, PRK05244, Der GTPase activator; Provisio	8e-05
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	8e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	1e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-04
pfam10147	217	pfam10147, CR6_interact, Growth arrest and DNA-dam	1e-04
pfam05672	171	pfam05672, MAP7, MAP7 (E-MAP-115) family	1e-04
pfam05890	270	pfam05890, Ebp2, Eukaryotic rRNA processing protei	1e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	2e-04
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	2e-04
pfam10320	257	pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	3e-04
PRK05244	177	PRK05244, PRK05244, Der GTPase activator; Provisio	3e-04
pfam07741	95	pfam07741, BRF1, Brf1-like TBP-binding domain	3e-04
pfam04641	254	pfam04641, Rtf2, Replication termination factor 2	3e-04
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	3e-04
cd12932	118	cd12932, RRP7_like, RRP7 domain ribosomal RNA-proc	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
pfam06102	168	pfam06102, DUF947, Domain of unknown function (DUF	4e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	5e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	5e-04
pfam10147	217	pfam10147, CR6_interact, Growth arrest and DNA-dam	5e-04
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	5e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	5e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	6e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	7e-04
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	7e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.001
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.001
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.001
pfam03343	603	pfam03343, SART-1, SART-1 family	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.001
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.001
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	0.001
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.001
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	0.001
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.001
pfam12923	131	pfam12923, RRP7, Ribosomal RNA-processing protein	0.001
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	0.001
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
CHL00189	742	CHL00189, infB, translation initiation factor 2; P	0.002
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.003
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.003
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.003
pfam04641	254	pfam04641, Rtf2, Replication termination factor 2	0.003
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.003
CHL00189	742	CHL00189, infB, translation initiation factor 2; P	0.003
pfam09494	627	pfam09494, Slx4, Slx4 endonuclease	0.003
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.003
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.003
pfam14303	147	pfam14303, NAM-associated, No apical meristem-asso	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
pfam03343	603	pfam03343, SART-1, SART-1 family	0.004
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.004
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.004
pfam07780	212	pfam07780, Spb1_C, Spb1 C-terminal domain	0.004
PTZ00217	393	PTZ00217, PTZ00217, flap endonuclease-1; Provision	0.004
pfam04086	272	pfam04086, SRP-alpha_N, Signal recognition particl	0.004

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  145 bits (368), Expect = 4e-42
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 66  VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFS 125
           +++ +KLR  TN F+++LA ADLL  L + P+     +  +W FG  +C +     V   
Sbjct: 3   ILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNG 62

Query: 126 TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP 185
            ASIL L  IS+DRY AIV PL+Y  I       +++  VW+L  ++S  P++  W  T 
Sbjct: 63  YASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTV 122

Query: 186 DHKQYRKHHPNVCIFVVNVYYALISSSISFWIPGFVM-----------KKKKKRKKKKKK 234
           +         +         Y L+S+ + F +P  V+           +K+ +    + +
Sbjct: 123 EEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQAR 182

Query: 235 KKKKKRKKKK 244
            K+   K++K
Sbjct: 183 AKRSSSKERK 192

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 15/188 (7%)

Query: 3   NTIYNSLNYTYNINYTSTNFS---NTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGN 59
           NT   +    Y   Y   +++       + TNSTI I         ++   I    ++GN
Sbjct: 8   NTTIENTTDYYYDTYYDEDYADCDLNIGYDTNSTILI---------VVYSTIFFFGLVGN 58

Query: 60  LLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS 119
           ++VI  V+   K++   + ++++LA +DLL  +  +PF     +  +W FG F C + + 
Sbjct: 59  IIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116

Query: 120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIML 179
                   S+  +  +SVDRY AIV P++   I       ++   +WI+  II  TPI+ 
Sbjct: 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWII-SIIETTPILF 175

Query: 180 GWYTTPDH 187
            + T  DH
Sbjct: 176 VYTTKKDH 183

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 67.0 bits (163), Expect = 1e-12
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 16/165 (9%)

Query: 11  YTYNINYTSTNFSNTSLFPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHR 70
           Y  NI Y   N  N  ++P+ S  +I IF  II         I  + GN   II ++  +
Sbjct: 77  YENNITYELINIKNKCMYPSISE-YIKIFYIII--------FILGLFGNAA-IIMILFCK 126

Query: 71  KLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS--FDVYFSTAS 128
           K++ IT+ ++ +LA +DL+  +   PF  I +  D+W FG FMC V ++  +  +FS   
Sbjct: 127 KIKTITDIYIFNLAISDLIFVI-DFPF-IIYNEFDQWIFGDFMCKVISASYYIGFFSNMF 184

Query: 129 ILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIIS 173
           ++ L  +S+DRY+AI+ P+ +      N  +++    WIL  II+
Sbjct: 185 LITL--MSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIIT 227

Length = 417

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
            +K+  K  KK   KR +KK                   EK+K+K K KK+    K   K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKK-------------------EKEKEKPKVKKRHRDTKNIGK 424

Query: 285 KRKKKKN 291
           +RK    
Sbjct: 425 RRKPSGT 431

Length = 434

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKK--KKKKKKTTKKK 280
           + K+KR  K+K+K+K+K+ ++      +    R       ++  KKK   KKK+   ++K
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195

Query: 281 KRKKKRKKKK 290
           +R+  R+  K
Sbjct: 196 QRQAAREAVK 205

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 11/79 (13%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           K +  ++++K+K++ K+ KKKK             + +EE + +K K++ K+K   K+K 
Sbjct: 99  KNESGKEEEKEKEQVKEEKKKKK-----------EKPKEEPKDRKPKEEAKEKRPPKEKE 147

Query: 283 KKKRKKKKNQHHRDVWQKK 301
           K+K KK +    R+  +K+
Sbjct: 148 KEKEKKVEEPRDREEEKKR 166

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRK 283
           K K   +KK  K  KK   K              R E++E++K+K K KK+   +  K  
Sbjct: 379 KTKAPSEKKTGKPSKKVLAK--------------RAEKKEKEKEKPKVKKRH--RDTKNI 422

Query: 284 KKRKKKKNQH 293
            KR+K     
Sbjct: 423 GKRRKPSGTS 432

Length = 434

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           K++ K K+  K+K+K+K KK +    R+    R     +   KK  KKK   K  +  + 
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193

Query: 283 KKKRKKKKNQ 292
           +K+R+  +  
Sbjct: 194 EKQRQAAREA 203

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|215521 PLN02967, PLN02967, kinase

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 219 GFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKK----- 273
           G V KKK  R  K+  KK      +  +   ++ +N  +  ++E +K  ++ ++K     
Sbjct: 66  GAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAAS 125

Query: 274 -----KKTTKKKKRKKKRKKKK 290
                +KT KK ++++K KK  
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMD 147

Length = 581

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 15/69 (21%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
               K  K+ + ++++KK KKKK               +E +++KK+KK KK+K  + K 
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKK---------------KEVKKEKKEKKDKKEKMVEPKG 182

Query: 282 RKKKRKKKK 290
            KKK+KKKK
Sbjct: 183 SKKKKKKKK 191

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
           ++K+  R+K+KKKK+K+  KK+     R     R  R +E  EK+K+ +K ++K  K K+
Sbjct: 71  VEKELLREKEKKKKRKRPGKKR-----RIALRLRRERTKERAEKEKRTRKNREK--KFKR 123

Query: 282 RKKKRKK 288
           R+K+++K
Sbjct: 124 RQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
           M  +  +KK K K KK + +    +          S G +  EKK KKKK +    +KKK
Sbjct: 104 MHIQPPKKKHKHKHKKHRTQDPLPEETPS-----DSEGLKGHEKKHKKKKHEDDKERKKK 158

Query: 282 RKKKRKKKKNQ 292
           +K+K+KKKK  
Sbjct: 159 KKEKKKKKKRH 169

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 9/78 (11%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKK---------KK 273
           ++K+K + K++KKKKK++ K++ +  +     +  R  +E+EK+K+KK          KK
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165

Query: 274 KKTTKKKKRKKKRKKKKN 291
           ++  + K R KK  KKK 
Sbjct: 166 RERVRAKSRPKKPPKKKP 183

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 20/72 (27%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK- 281
            KK  +K KK  +K +K+++++ +  +        + EEEEE+K+KK+++K++  ++ + 
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464

Query: 282 -RKKKRKKKKNQ 292
            ++++ +KKK Q
Sbjct: 465 EKEEEEEKKKKQ 476

Length = 482

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 21/74 (28%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            K+++++K++ K++KKK+K+K  +  +D         EE +EK+  K+K+K+K  K ++ 
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKD-----RKPKEEAKEKRPPKEKEKEKEKKVEEP 157

Query: 283 KKKRKKKKNQHHRD 296
           + + ++KK +  R 
Sbjct: 158 RDREEEKKRERVRA 171

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 20/66 (30%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           KK  K  KK   K+ +K++K+K                    +K K KK+ + T    KR
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEK--------------------EKPKVKKRHRDTKNIGKR 425

Query: 283 KKKRKK 288
           +K    
Sbjct: 426 RKPSGT 431

Length = 434

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 9/66 (13%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           K+   + +K+ + +++++K+KK +             +E++EKK KK+K  +    KKK+
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVK---------KEKKEKKDKKEKMVEPKGSKKKK 187

Query: 283 KKKRKK 288
           KKK+KK
Sbjct: 188 KKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 33/107 (30%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHR-DVWINRT------------------------- 256
           K KKK KK+K+K++ K +KK+        + ++ +                         
Sbjct: 201 KPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPD 260

Query: 257 -----SRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKK--KKNQHHRD 296
                 +  E EE KK  K KKKK  K+K+ KKK+KK      HH D
Sbjct: 261 SEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSD 307

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
           KK+ KR+KKK+KKKKKK+ KK N+         +    +EEE+ ++ K+++     +K
Sbjct: 85  KKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 228 RKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKK--KKTTKKKKRKKK 285
             +  KKK K K KK + Q          S G +  EKK KKKK +  K+  KKKK KKK
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164

Query: 286 RKKKKNQHHRDV 297
           +KK+ +  H  V
Sbjct: 165 KKKRHSPEHPGV 176

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 229 KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKK 288
           KKKKK+  ++  K KK    +  W  +  + +++++K K KK  KK    +KK +K+ + 
Sbjct: 61  KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120

Query: 289 KK 290
           K 
Sbjct: 121 KL 122

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 203 NVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEE 262
            + ++LISS  +    G   ++K K+    KK  K+++  KK     D       + + +
Sbjct: 719 KIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPK 778

Query: 263 EEKKKKKKKKKKKTTKKKKR---KKKRKKKKNQ 292
             KK  +K KK     +K     K KR  KK  
Sbjct: 779 AAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811

Length = 813

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 220 FVMKKKKKRKKKKKKKKKKKRKK----KKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKK 275
             M K KK KKKKKKKKK+++       + +       +  SR + EEE  + +   KK+
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKR 329

Query: 276 TTKKKK---------------RKKKRKKKKNQHHRD 296
             +++                ++++  +KK +  R 
Sbjct: 330 KEEQEDDDFVEDDDDLQASLAKQRRLAQKKRKKLRP 365

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           + K K+  + K K + + +KK  +  +        + EEE + K   + KKK    KKK 
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAK-------KQAEEEAKAKAAAEAKKKAAEAKKKA 175

Query: 283 KKKRKKKK 290
           + + K K 
Sbjct: 176 EAEAKAKA 183

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 15/78 (19%)

Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRK 283
             KK  KK KK  +K  KK++               EE++EKKKK    KKK  ++++ K
Sbjct: 404 GSKKATKKIKKIVEKAEKKRE---------------EEKKEKKKKAFAGKKKEEEEEEEK 448

Query: 284 KKRKKKKNQHHRDVWQKK 301
           +K++++K +   +  ++K
Sbjct: 449 EKKEEEKEEEEEEAEEEK 466

Length = 482

>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 37/208 (17%), Positives = 83/208 (39%), Gaps = 17/208 (8%)

Query: 52  IITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWY 108
            + ++ G   N L+    +K   L+        + A ++ ++    + +   ++L D  +
Sbjct: 1   FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSF 60

Query: 109 FGYFMCDVWNSFDVYFS-TASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWI 167
               +        +      S L    IS++R+ A+  P +Y  I +     ++++ +WI
Sbjct: 61  LPELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWI 120

Query: 168 LPGIISFTP-IMLGWYTT--PDHKQYRKHHPNVC-------IFVVNVYYALISSSISFWI 217
           +  IIS      LG +    P+   +       C        F+ N+   +I++ I+   
Sbjct: 121 IAIIISTLFYFPLGCHFYYSPESLTWSFDEDPPCAEIGWYGDFLKNLVLVIITNIINVIT 180

Query: 218 PGFVMKKKKKRKKKKKKKKKKKRKKKKN 245
               +K +K  KK     ++ K+++KK 
Sbjct: 181 ---FIKLRKFSKKSSLSSEESKKRRKKE 205

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srx is part of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 275

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 15/71 (21%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKK---KKKKTTKK 279
           KK  KRK+K+KKK KK+            W  R  + E+++ +++KK++   KK+K  KK
Sbjct: 145 KKALKRKEKQKKKSKKE------------WKERKEKVEKKKAERQKKREENLKKRKDDKK 192

Query: 280 KKRKKKRKKKK 290
            K+KKK KKK 
Sbjct: 193 NKKKKKAKKKG 203

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 38/79 (48%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            + KK  +  K + +    + +  +   +    +    +++ +  KKK ++KKK  + KK+
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399

Query: 283  KKKRKKKKNQHHRDVWQKK 301
             ++ KKK ++  +    KK
Sbjct: 1400 AEEDKKKADELKKAAAAKK 1418

Length = 2084

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 16/85 (18%)

Query: 220 FVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVW--------INRTSRG------EEEEEK 265
              KKKK     K  K    R KKK++  R  W          ++SR       E   E+
Sbjct: 99  TKKKKKKDPTAAKSPKAAAPRPKKKSE--RISWAPTLLDSPRRKSSRSSTVQNKEATHER 156

Query: 266 KKKKKKKKKKTTKKKKRKKKRKKKK 290
            K+++ ++KK   K +++K++KK+K
Sbjct: 157 LKEREIRRKKIQAKARKRKEKKKEK 181

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 12/79 (15%), Positives = 35/79 (44%)

Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRK 283
           K+KK+++ KK  ++ +   +      ++ +      E+ ++  +  + K+K   +++   
Sbjct: 169 KRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLL 228

Query: 284 KKRKKKKNQHHRDVWQKKY 302
                K N+   D+ Q+  
Sbjct: 229 YLDYLKLNEERIDLLQELL 247

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 26/66 (39%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
           K++ K+  + KKK   +  +        +  T    E +  KKK K   K    K   KK
Sbjct: 35  KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94

Query: 285 KRKKKK 290
           K K + 
Sbjct: 95  KLKDEL 100

Length = 509

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWI--NRTSRGEEEEEKKKKKKKKKKKTTKK 279
             + +K    + K  K K  +       D     + + +G E+ +++K KKKKKK    K
Sbjct: 199 ETEGEKGGGGRGKDLKIKDLEG------DDEDDGDESDKGGEDGDEEKSKKKKKKLAKNK 252

Query: 280 KKRKKKRKKKK 290
           KK    +K K+
Sbjct: 253 KKLDDDKKGKR 263

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 17/68 (25%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
             +RKK +KK++K ++K +K                 EE +K   KKK +   KK K   
Sbjct: 408 PAERKKLRKKQRKAEKKAEK-----------------EEAEKAAAKKKAEAAAKKAKGPD 450

Query: 285 KRKKKKNQ 292
              KK + 
Sbjct: 451 GETKKVDP 458

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 222 MKKKKKRKKKKKKKKKKKR------KKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKK 275
            K+K K ++ K+K++K+        K+ K +  +   + R     +E  +K+K + +KK+
Sbjct: 275 PKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ---LARLKEIAKEVAQKEKARARKKE 331

Query: 276 TTKKKKRKKKRKKKK 290
             K++  KKK K++K
Sbjct: 332 QRKERGEKKKLKRRK 346

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 13/69 (18%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
           + ++K++KKK+K+  KK+R   +                E  +++ +K+K+ +K  +KK 
Sbjct: 75  LLREKEKKKKRKRPGKKRRIALR-------------LRRERTKERAEKEKRTRKNREKKF 121

Query: 282 RKKKRKKKK 290
           ++++++K+K
Sbjct: 122 KRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 35/109 (32%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKK--------- 272
           +KKKK+ K K  K+  KK+KKK                +    + KKK ++         
Sbjct: 84  LKKKKRVKTKAYKEPTKKKKKKDPT--------AAKSPKAAAPRPKKKSERISWAPTLLD 135

Query: 273 ------KKKTTKKKK------------RKKKRKKKKNQHHRDVWQKKYT 303
                  + +T + K            R+KK + K  +      +K+ T
Sbjct: 136 SPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELT 184

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 18/68 (26%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
            ++  KR ++ K+K  K  KKK+                  EEKK +K+KKKKK  KK K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKR------------------EEKKPQKRKKKKKRKKKGK 406

Query: 282 RKKKRKKK 289
           ++KK+ +K
Sbjct: 407 KRKKKGRK 414

Length = 414

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           +K+ +++   +K  K+  +  K             + + EE K K+  + K K   + ++
Sbjct: 91  QKELEQRAAAEKAAKQAEQAAKQA--------EEKQKQAEEAKAKQAAEAKAKAEAEAEK 142

Query: 283 KKKRKKKK 290
           K K + KK
Sbjct: 143 KAKEEAKK 150

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 226 KKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKK------KTTKK 279
           KK+K   K+ K   + KKK +   D         E  E K+KKK K  K      +   +
Sbjct: 1   KKKKSSPKRSKGMAKSKKKTREELDA--------EARERKRKKKHKGLKSGSRHNEGNTQ 52

Query: 280 KKRKKKRKKK 289
            K K + +KK
Sbjct: 53  SKGKGQAQKK 62

Length = 177

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
           KKK KK KK+K+K++++ +K     D         +  EE K +K ++ ++  ++++ + 
Sbjct: 14  KKKAKKAKKEKRKQRKQARKGADDGD-----DELKQAAEEAKAEKAERDRELNRQRQAEA 68

Query: 285 KRKKKKNQ 292
           ++K    Q
Sbjct: 69  EQKAIVAQ 76

This domain, found in various prokaryotic proteins, has no known function. Length = 177

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           KKKKK   ++ +K KK+ ++K+    +  W  + S+ +++++K KK  KK  K+ KK ++
Sbjct: 61  KKKKKELAEEIEKVKKEYEEKQ----KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116

Query: 283 KKKRKKKK 290
           + + K + 
Sbjct: 117 EAEDKLED 124

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 20/71 (28%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            ++++R KKKK+ K K  K+                      KKKKKK      + K   
Sbjct: 78  LQREERLKKKKRVKTKAYKEPT--------------------KKKKKKDPTAAKSPKAAA 117

Query: 283 KKKRKKKKNQH 293
            + +KK +   
Sbjct: 118 PRPKKKSERIS 128

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible proteins-interacting protein 1

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 216 WIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWIN-RTSRGEEEEEKKKKKKKKKK 274
            I  +  +K+K+ +K +  K++K+R   + + H   W++ R  R +E  ++K+K++KKK 
Sbjct: 136 MIADWRAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKV 195

Query: 275 KTTKKKKRKKKR 286
           K  K++++++KR
Sbjct: 196 KEAKRREKEEKR 207

Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity. Length = 217

>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTS--RGEEEEEKKKKKKKKKKKTTKKK 280
           K+++ R+++++++++++ ++++++  R+    R +  R   EEE +++++++ ++  +K 
Sbjct: 31  KRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKA 90

Query: 281 KRKKKRKKKKNQHHRDVWQKK 301
           KRK + ++K+ Q  ++  QK+
Sbjct: 91  KRKAEEEEKQEQEEQERIQKQ 111

The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171

>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 224 KKKKRKKKKKK---KKKKKRKKKKNQHHR----DVWINRTSRGEEEEEKKKKKKKKKKKT 276
           K ++R K+KK    K KK +KK+K         D          ++  K   KKK +K  
Sbjct: 154 KLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDF-------LVDDAAKGGSKKKGRKGG 206

Query: 277 TKKKKRKKKRKKK 289
             + K   KRK K
Sbjct: 207 AARGKPNAKRKAK 219

This family consists of several Eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis. This family also plays a role in chromosome segregation. Length = 270

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 18/63 (28%)

Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
           V +++KK KKKKK+ KK+K++KK                  ++++K  + K  KK  KKK
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKK------------------DKKEKMVEPKGSKKKKKKK 190

Query: 281 KRK 283
           K+K
Sbjct: 191 KKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQKKYT 303
           E E E+++KK+KKKKK  KK+K++KK KK+K    +   +KK  
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           + +K+R  ++ ++K+ +++    +  +          + E+  K+ ++K+K+    K K+
Sbjct: 79  EAEKQRAAEQARQKELEQRAAAEKAAK----------QAEQAAKQAEEKQKQAEEAKAKQ 128

Query: 283 KKKRKKKK 290
             + K K 
Sbjct: 129 AAEAKAKA 136

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 11/68 (16%)

Query: 223 KKKKKRKKKKKKK-KKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
           K+K+K+KKK KK+ K++K K +K +  R           ++ E+  KK+K  KK  KKKK
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQ----------KKREENLKKRKDDKKNKKKKK 198

Query: 282 RKKKRKKK 289
            KKK +  
Sbjct: 199 AKKKGRIL 206

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             KKK +  KK  +  K + +   ++          +  + E  +KKK++ KKK    KKK
Sbjct: 1334 AKKKAEEAKKAAEAAKAEAEAAADEA-------EAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Query: 282  RKKKRKKKKNQHHRDVWQKK 301
             ++K+K  + +   +  +KK
Sbjct: 1387 AEEKKKADEAKKKAEEDKKK 1406

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
                + +  ++K +  ++KK++ +   D    +    ++ +E KKK ++ KKK  + KK 
Sbjct: 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413

Query: 283  KKKRKK 288
               +KK
Sbjct: 1414 AAAKKK 1419

Length = 2084

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDV---------WINRTSRGEEEEEKKKKKKKKK 273
           KKK K KK+KK+  +   K++  +                      E+E+E K   ++  
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSD 282

Query: 274 KKTTKKKKRKKKRKKKKN 291
            +   ++K K+KRK+ K 
Sbjct: 283 SEEETEEKEKEKRKRLKK 300

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 48/81 (59%), Gaps = 6/81 (7%)

Query: 223 KKKKKRKKKKKKKKKKKRKKK------KNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKT 276
            ++K+R+K+K++ +K++R+K+      + Q        +  R EEE E+++  +K+ +  
Sbjct: 213 YERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDE 272

Query: 277 TKKKKRKKKRKKKKNQHHRDV 297
             +++  +KR+ K+ +H R++
Sbjct: 273 ELEQENAEKRRMKRLEHRREL 293

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             K++K++ K+K  KKK +K KK+    D ++       +E E K+  KKKKKK  KKKK
Sbjct: 9   EVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68

Query: 282 RKKKRKKK 289
           +       
Sbjct: 69  KNLGEAYD 76

Length = 470

>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 52  IITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGY 111
            +  I GN+++II   K +KLR   +Y +     ADLL     + F  ++  T       
Sbjct: 1   SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLL-FTGTQLTRN 59

Query: 112 FMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGI 171
             C +     ++  TA    +  I +DR  A+  P+ Y ++ +   + + L    I P I
Sbjct: 60  E-CFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQL----IFPVI 114

Query: 172 ISFTPIMLGWYTTPDHKQYRKHHPNVC---------IFVVNVYYALISSSISFWIPGFVM 222
            S   ++ G+    D          VC          F +    ++I + I   +   ++
Sbjct: 115 YSSFILVYGFLERDDETII------VCAPPLALNGTAFRIFTLSSVIINVIVLIVYIILI 168

Query: 223 KKKKKRKKKKKKKKKK 238
              KK+ +      KK
Sbjct: 169 IIFKKKGQTTNSDSKK 184

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srsx is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 257

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             KKK +  KK  + KKK  + KK     D    +    ++  E  K + +      +  +
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKA---DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Query: 282  RKKKRKKKKNQHHR 295
             K +  +KK +  +
Sbjct: 1364 EKAEAAEKKKEEAK 1377

Length = 2084

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 19/68 (27%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           +K+ +R+++ KKKK+ K K  K                   E  KKKKKK     K  K 
Sbjct: 75  EKELQREERLKKKKRVKTKAYK-------------------EPTKKKKKKDPTAAKSPKA 115

Query: 283 KKKRKKKK 290
              R KKK
Sbjct: 116 AAPRPKKK 123

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 25/93 (26%)

Query: 222 MKKKKKRKKKKKKKKKKK-----------RKKKKNQHHRDVWINRTSRGEEEEEKKKKKK 270
            KK   ++ K   K KKK           RK+KK +H      +R + G  + + K + +
Sbjct: 2   KKKSSPKRSKGMAKSKKKTREELDAEARERKRKK-KHKGLKSGSRHNEGNTQSKGKGQAQ 60

Query: 271 KK------KKK-------TTKKKKRKKKRKKKK 290
           KK      KK          K KK+K K KK K
Sbjct: 61  KKDPRIGSKKPIPLGVEEKVKPKKKKPKSKKPK 93

Length = 177

>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQ 292
           EE+EEK+ K+K  +   + KKK+K+K KKK+++
Sbjct: 30  EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62

This region covers both the Brf homology II and III regions. This region is involved in binding TATA binding protein. Length = 95

>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKK---KKKKKKKKKTTK 278
           +K + + ++ KKKKKKKK+K KKN           S  E         +      +    
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNN-------ATGSSAEATVSSAVPTELSSGAGQVGEA 224

Query: 279 KKKRKKKRKKKKNQ 292
           KK +KK+     N+
Sbjct: 225 KKLKKKRSIAPDNE 238

It is vital for effective cell-replication that replication is not stalled at any point by, for instance, damaged bases. Rtf2 stabilizes the replication fork stalled at the site-specific replication barrier RTS1 by preventing replication restart until completion of DNA synthesis by a converging replication fork initiated at a flanking origin. The RTS1 element terminates replication forks that are moving in the cen2-distal direction while allowing forks moving in the cen2-proximal direction to pass through the region. Rtf2 contains a C2HC2 motif related to the C3HC4 RING-finger motif, and would appear to fold up, creating a RING finger-like structure but forming only one functional Zn2+ ion-binding site. Length = 254

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           +K    K+  K   K+K K +K Q             + E EK  K   ++K   + +K 
Sbjct: 5   EKTFTDKEVDKAIAKEKAKWEKKQE----------EKKSEAEKLAKMSAEEKAEYELEKL 54

Query: 283 KKKRKKKKNQHHRDVWQKKYT 303
           +K+ ++ + +  R   + +  
Sbjct: 55  EKELEELEAELARRELKAEAK 75

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A (Rrp7A), and similar proteins

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 10/72 (13%)

Query: 231 KKKKKKKKKRKKKKNQHHRDVWI--------NRTSRGEEEEEKKKKKKKKKKKTTKKKK- 281
           K+++++K++ K+ +N+   D ++         +T+R E  E K K+K+KKKKK  + +  
Sbjct: 32  KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDF 91

Query: 282 -RKKKRKKKKNQ 292
            R + R+KKK +
Sbjct: 92  YRFQIREKKKEE 103

This CD corresponds to the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by YCL031C gene from Saccharomyces cerevisiae. It is an essential yeast protein involved in pre-rRNA processing and ribosome assembly, and is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle. Rrp7A, also termed gastric cancer antigen Zg14, is the Rrp7p homolog mainly found in Metazoans. The cellular function of Rrp7A remains unclear currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain. Length = 118

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 15/72 (20%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
            ++K+K K KKKK KKKK K K                +++++K  K +KK +K  + K 
Sbjct: 78  YEEKQKWKWKKKKSKKKKDKDKD---------------KKDDKKDDKSEKKDEKEAEDKL 122

Query: 282 RKKKRKKKKNQH 293
               +   +   
Sbjct: 123 EDLTKSYSETLS 134

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           + K K   + KKK  + +KK + +              E + K K ++ K K    K K 
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAE---------AKAKAEAKAKAKAEEAKAKAEAAKAKA 205

Query: 283 KKKRKKKKNQ 292
             +   K   
Sbjct: 206 AAEAAAKAEA 215

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK- 281
            +KK     KK+ ++ KK ++ K +   +       +  EEE K K ++ KK+    KKK 
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746

Query: 282  ---RKKKRKKKKNQHHRDVWQKK 301
               +K + +KKK  H +   +KK
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947)

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTK--KK 280
            K K R+++  K+ KK+ K+   +  +  ++ ++   +   +KK  + KK K+  K  +K
Sbjct: 98  LKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEK 157

Query: 281 KRKKKRKKKK 290
           KRKK   K+K
Sbjct: 158 KRKKNAGKEK 167

Family of eukaryotic proteins with unknown function. Length = 168

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 219 GFVMKKKKKRKKKKKKKKKKKRKKKKNQ---HHRDVWINRTSRGEEEEEKKKKKKKKKKK 275
            F +        + +KK+++ +KK K        D      S   +  E  K KK KKKK
Sbjct: 223 LFTLDSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKK 282

Query: 276 TTKKKKRKKK 285
             KKK+RK  
Sbjct: 283 KKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 29/92 (31%)

Query: 220 FVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKK--------- 270
            + K  + ++K K ++ K+KR+K+                E +EEK+ KKK         
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKEL-------------EREAKEEKQLKKKLAQLARLKE 314

Query: 271 -------KKKKKTTKKKKRKKKRKKKKNQHHR 295
                  K+K +  KK++RK++ +KKK +  +
Sbjct: 315 IAKEVAQKEKARARKKEQRKERGEKKKLKRRK 346

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible proteins-interacting protein 1

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 224 KKKKRKKKKKKKKKKKRKKK---KNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
           + +KRK+++K +  K+RK++   + + H   W++   R    +E  ++K+K++KK  K+ 
Sbjct: 141 RAQKRKREQKARAAKERKERLVAEAREHFGYWVD--PRDPRFQEMLQQKEKEEKKKVKEA 198

Query: 281 KRKKKRKK 288
           KR++K +K
Sbjct: 199 KRREKEEK 206

Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity. Length = 217

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 15/157 (9%)

Query: 46  MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD 105
           +    + I  ++GN+LVI  +I  R + ++  Y + ++A +DL++     PF  I +  +
Sbjct: 33  VFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVY-LFNIAMSDLMLVFS-FPF-IIHNDLN 89

Query: 106 EWYFGYFMCDVWNS--FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLS 163
           EW FG FMC +     F  +FS    + L  IS+DRY  +V   +        +VLL ++
Sbjct: 90  EWIFGEFMCKLVLGVYFVGFFSNMFFVTL--ISIDRYILVVNATKIKNKSISLSVLLSVA 147

Query: 164 NVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF 200
             W+   I+S  P M+ +Y   D+    K     CIF
Sbjct: 148 -AWVCSVILS-MPAMVLYYV--DNTDNLKQ----CIF 176

Length = 323

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
              ++  K      KK +K+ KN   +     +  + +E++E K + + K    T KK +
Sbjct: 41  TFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100

Query: 283 KKKRKKKKNQHHRDVWQK 300
           K K+K  K + + DV   
Sbjct: 101 KTKKKPPKPKPNEDVDNA 118

Length = 413

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRD 296
              E+K  K  KK      +KK K+K K K  + HRD
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418

Length = 434

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 223 KKKKKRKKKKKKKKKKKRK---KKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKK 279
           +K  K+ ++  K+ ++K+K   + K +   +      ++ E E EKK K++ KK+   + 
Sbjct: 101 EKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE----AKAKAEAEAEKKAKEEAKKQAEEEA 156

Query: 280 KKR-----KKKRKKKKNQ 292
           K +     KKK  + K +
Sbjct: 157 KAKAAAEAKKKAAEAKKK 174

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 221  VMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKK----KKKKKKKKKT 276
              KK ++ KKK+ ++KKK  + KK +    +     ++  EE++KK    KK ++ +KK 
Sbjct: 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690

Query: 277  TKKKKRKKKRKKKKNQ 292
             +  K++ +  KK  +
Sbjct: 1691 AEALKKEAEEAKKAEE 1706

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             KKK +  KKK    KKK ++ K            ++ E E    + +  ++K    +KK
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKA-------AEAAKAEAEAAADEAEAAEEKAEAAEKK 1372

Query: 282  RKKKRKK 288
            +++ +KK
Sbjct: 1373 KEEAKKK 1379

Length = 2084

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 17/68 (25%), Positives = 28/68 (41%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            K K    K++ K+  + KKK  +    V I  +   ++ ++  +    KKK  T  K  
Sbjct: 27  SKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAA 86

Query: 283 KKKRKKKK 290
             K   KK
Sbjct: 87  AAKAPAKK 94

Length = 509

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 15/86 (17%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKK-------KKKKKKKKT 276
           ++K ++  K++  K K++  ++         +  R   +EE KK       KK K++++ 
Sbjct: 139 RQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQK 198

Query: 277 TKKKKRKKKRKKKKNQHHRDVWQKKY 302
            ++++RK+++K+++ +  +   ++ +
Sbjct: 199 REEERRKQRKKQQEEEERKQKAEEAW 224

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHR 249
            KKKK +  K++KKKKK KKKK + H 
Sbjct: 144 HKKKKHEDDKERKKKKKEKKKKKKRHS 170

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 8/52 (15%)

Query: 246 QHHRDVWINRTSRGEEEE-----EKKKKKKKKKKKTTKKKKRKKKRKKKKNQ 292
           Q HR+     TS+  E+      EKK KK KKK+K  K+K+R K +KK+   
Sbjct: 176 QKHRNA---ETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 19/70 (27%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           +K KK  + ++ ++K++ KK+K                 +EEK  KK+ K++K  KK+K+
Sbjct: 57  EKWKKETEDEEFQQKREEKKRK-----------------DEEKTAKKRAKRQK--KKQKK 97

Query: 283 KKKRKKKKNQ 292
           KKK+K KK  
Sbjct: 98  KKKKKAKKGN 107

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 230 KKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKR 286
            +KK+++ KK+ K  N    D      +    +  +  K KK KKK  KKKKR+K  
Sbjct: 236 AEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 15/79 (18%), Positives = 37/79 (46%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            +      +  ++K +   KKK+    +     + +  +++ ++ KKK ++ KK   + K+
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412

Query: 283  KKKRKKKKNQHHRDVWQKK 301
                KKK ++  +   +KK
Sbjct: 1413 AAAAKKKADEAKKKAEEKK 1431

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
            +KK    KKK  + KKK  +KKK    +     +    ++ +E KKK ++ KK    KKK
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAK----KKAEEAKKADEAKKKAEEAKKAEEAKKK 1465

Query: 282  RKKKRK----KKKNQHHR 295
             ++ +K    KKK +  +
Sbjct: 1466 AEEAKKADEAKKKAEEAK 1483

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            KK ++ KKK+ ++KKK  + KK +    +      +  EE++KK ++ KK ++  KK   
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761

Query: 283  KKKRKKKKNQHHR 295
             KK ++KK +  R
Sbjct: 1762 LKKEEEKKAEEIR 1774

Length = 2084

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 259 GEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKK 290
           GE+E +++++ KKKK+  TK  K   K+KKKK
Sbjct: 74  GEKELQREERLKKKKRVKTKAYKEPTKKKKKK 105

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 15/90 (16%)

Query: 221 VMKKKKK-------RKKKKKKKKKKKRKKKKNQHHRDVWINRTSRG------EEEEEKKK 267
             KKKKK        K    + KKK  +        D    ++SR       E   E+ K
Sbjct: 99  TKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLK 158

Query: 268 KKKKKKKKTTKK--KKRKKKRKKKKNQHHR 295
           +++ ++KK   K  K+++KK++K+  Q  R
Sbjct: 159 EREIRRKKIQAKARKRKEKKKEKELTQEER 188

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 265 KKKKKKKKKKKTTKKKKRKKKRKKKKNQ 292
           KKK+++KK +K  KKKKRKKK KK+K +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKK 411

Length = 414

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 15/88 (17%), Positives = 47/88 (53%), Gaps = 17/88 (19%)

Query: 222 MKKKKKRKKKKK--------KKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKK 273
            K+K++R++ +         ++K+++ + ++    R+       R +EE+E + ++K++K
Sbjct: 63  RKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREK 122

Query: 274 KKTTK---------KKKRKKKRKKKKNQ 292
           +K  +         + +RK++ K+++ +
Sbjct: 123 QKKLREEIDEFNEERIERKEEEKERERE 150

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           + K+++++ K+K  KKK KK K     D         E +E + K+  KKKKK  KKKK+
Sbjct: 9   EVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68

Query: 283 KKKRKKKKN 291
           K   +    
Sbjct: 69  KNLGEAYDL 77

Length = 470

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
              K+K K +KK+++KK   +K  +                EEK + + +K +K  ++ +
Sbjct: 16  AIAKEKAKWEKKQEEKKSEAEKLAK-------------MSAEEKAEYELEKLEKELEELE 62

Query: 282 RKKKRKKKKNQ 292
            +  R++ K +
Sbjct: 63  AELARRELKAE 73

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 19/68 (27%), Positives = 25/68 (36%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            K   +K   K K   K+  KK      V   + ++   +  KK KK  KK      K  
Sbjct: 208 AKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAV 267

Query: 283 KKKRKKKK 290
           KK  KK  
Sbjct: 268 KKAAKKAA 275

Length = 333

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 12/73 (16%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
           +   KK+++++++++ + +   ++ Q             +E  EK+  K K++K+   ++
Sbjct: 94  LGLDKKEKEEEEEEEVEVEELDEEEQI------------DELLEKELAKLKREKRRENER 141

Query: 281 KRKKKRKKKKNQH 293
           K+K+  K++    
Sbjct: 142 KQKEILKEQMKML 154

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7)

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 218 PGFVMKKKKKRKKKKKKKKKKKRKKKKN----QHHRDVWINRTSRGEEEEEKKKKKKKKK 273
            G    K  + ++K K+KKKKK+K+ +N    Q        R  + EE  E +KK ++ K
Sbjct: 64  AGASRNKAAEERRKLKEKKKKKKKELENFYRFQI-------REKKKEELAELRKKFEEDK 116

Query: 274 KKTTKKKKRKK 284
           K+  + K  +K
Sbjct: 117 KRIEQLKAARK 127

RRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle. Length = 131

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 229 KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKK 288
           K K + ++ +++ KK              R    E++K  ++++K K    +K++K R +
Sbjct: 107 KAKVQAQRAEQQAKK--------------REAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152

Query: 289 KKNQ 292
           K   
Sbjct: 153 KPEP 156

Length = 213

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 17/73 (23%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
           K K + ++ +++ KKR+                    E+EK  ++++K K    +KKRK 
Sbjct: 107 KAKVQAQRAEQQAKKREA-----------------AGEKEKAPRRERKPKPKAPRKKRKP 149

Query: 285 KRKKKKNQHHRDV 297
           + +K + QH    
Sbjct: 150 RAQKPEPQHTPVS 162

Length = 213

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 216 WIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKK 275
           W       KKKK K K KK  KK  K +K               ++E+E + K +   K 
Sbjct: 84  WKWKKKKSKKKKDKDKDKKDDKKDDKSEK---------------KDEKEAEDKLEDLTKS 128

Query: 276 TTKKKKRKKKRKKKKNQHHRDVWQ 299
            ++      + K +K   H+D++Q
Sbjct: 129 YSETLSTLSELKPRKYALHKDIYQ 152

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEE--EKKKKKKKKKKKTTKK 279
             KKK +  KK  + KKK  + KK +           + EE +  ++ KKK ++ KK  + 
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAE-------EAKKKAEEAKKADEAKKKAEEAKKADEA 1488

Query: 280  KKRKKKRKKKKNQHHRDVWQKK 301
            KK+ ++ KKK ++  +    KK
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKK 1510

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            KK  + KKK ++ KK    KKK +  +     +    +++ E+ KK  +  K   +    
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAK----KKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357

Query: 283  KKKRKKKKNQ 292
            + +  ++K +
Sbjct: 1358 EAEAAEEKAE 1367

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 223  KKKKKRKKKK--KKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKK 280
            KKK    KKK  + KK  +  K + +   D         E E  ++K +  +KKK   KK
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAAD---------EAEAAEEKAEAAEKKKEEAKK 1378

Query: 281  KRKKKRKKKKNQHHRDVWQKK 301
            K    +KK + +   D  +KK
Sbjct: 1379 KADAAKKKAEEKKKADEAKKK 1399

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             KKK + KKK  + KKK  + KK    +     +    ++ EE KKK ++ KK    KKK
Sbjct: 1423 AKKKAEEKKKADEAKKKAEEAKKADEAK----KKAEEAKKAEEAKKKAEEAKKADEAKKK 1478

Query: 282  RKKKRKKKKNQHHRDVWQKK 301
             ++ +K  + +   +  +KK
Sbjct: 1479 AEEAKKADEAKKKAEEAKKK 1498

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            KK ++ KK  + KKK +  KKK    +          E  + + +    + +   +K + 
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368

Query: 283  KKKRK---KKK 290
             +K+K   KKK
Sbjct: 1369 AEKKKEEAKKK 1379

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 221  VMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEE---EEKKKKKKKKKKKTT 277
            + K ++++KK ++ KKK+  +KKK +  +        +  EE    E+ KKK ++ KK  
Sbjct: 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684

Query: 278  KKKKRKKKRKKKKNQHHRDVWQKK 301
            + +K+  +  KK+ +  +   + K
Sbjct: 1685 EDEKKAAEALKKEAEEAKKAEELK 1708

Length = 2084

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRG----------------------E 260
           +K+ K +KK+++ ++ + KK +        ++  S G                      E
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263

Query: 261 EEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQKK 301
            E E   K  + K+KT  ++ ++K+RK+ + +   +   KK
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 14/83 (16%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWI----NRTSRGEEEEEKKKKKKKKKKKTT 277
           M +K+   ++ +++  +KR+ K+ +H R++          R  E EE+ ++ ++ +++  
Sbjct: 264 MLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEA 323

Query: 278 KKKKR-KKKRKKKKNQHHRDVWQ 299
           +++ R +++R++   +H   +  
Sbjct: 324 ERQARIEEERQRLLKEHAEALLG 346

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/68 (29%), Positives = 26/68 (38%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
           KK + K+KKK KKK        +  D   N             +K K K +  KKK    
Sbjct: 73  KKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVN 132

Query: 285 KRKKKKNQ 292
           K   KK +
Sbjct: 133 KSTNKKKK 140

Length = 742

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 15/75 (20%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            +  +   ++ K KK  +KKK  +  +     + +RG +  +  K +++++ +  +++++
Sbjct: 104 ARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGR--RRRRK 161

Query: 283 KKKRKKKKNQHHRDV 297
           KKK++K   +  R+V
Sbjct: 162 KKKKQKPTEKIPREV 176

Length = 746

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTS-RGEEEEEKKKKKKKKKKKTT 277
            ++++K++KKKK    KK+++++ +        +     E EEEK+++++KKKK+ T
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478

Length = 482

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 20/68 (29%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           +K++++K+K ++K  KKR K+                    +KKK+KKKKKKK  K  K+
Sbjct: 70  QKREEKKRKDEEKTAKKRAKR--------------------QKKKQKKKKKKKAKKGNKK 109

Query: 283 KKKRKKKK 290
           ++K   K 
Sbjct: 110 EEKEGSKS 117

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 20/85 (23%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKK--------- 273
           +K+++RK +KK+K+K+ +KK+  Q           + EE + KKK    +          
Sbjct: 13  RKREQRKARKKQKRKEAKKKEDAQKSEA----EEVKNEENKSKKKAAPIENAEGNIVFSK 68

Query: 274 -------KKTTKKKKRKKKRKKKKN 291
                  +     K +KKK+KKK +
Sbjct: 69  VEFADGEQAKKDLKLKKKKKKKKTD 93

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEE-EEKKKKKKKKKKKTTKKK 280
             +  +++ +  +KKK++ +KK      +     +    +++ EE KKK  + KK    KK
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418

Query: 281  KRKKKRKKKKNQHHRDVWQKK 301
            K  + +KK + +   D  +KK
Sbjct: 1419 KADEAKKKAEEKKKADEAKKK 1439

Length = 2084

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 260 EEEEEKKKKKKKKKKKTTKKKKRKKKRKKKK 290
           E E+E +++++ KKKK  K K  K+  KKKK
Sbjct: 73  EGEKELQREERLKKKKRVKTKAYKEPTKKKK 103

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 14/72 (19%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKK----KKKKKKKKKTTKKK 280
           + + ++K++K+KK + +  +    R          E EEE K    +++K ++++  + +
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAE 172

Query: 281 KRKKKRKKKKNQ 292
           +R++K +K++  
Sbjct: 173 RRERKEEKEREV 184

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 17/64 (26%), Positives = 26/64 (40%)

Query: 225 KKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKK 284
           KKK+KKKKKK KK        +      +         +  + KK KKK+      ++ +
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEKSE 241

Query: 285 KRKK 288
             K 
Sbjct: 242 VYKS 245

It is vital for effective cell-replication that replication is not stalled at any point by, for instance, damaged bases. Rtf2 stabilizes the replication fork stalled at the site-specific replication barrier RTS1 by preventing replication restart until completion of DNA synthesis by a converging replication fork initiated at a flanking origin. The RTS1 element terminates replication forks that are moving in the cen2-distal direction while allowing forks moving in the cen2-proximal direction to pass through the region. Rtf2 contains a C2HC2 motif related to the C3HC4 RING-finger motif, and would appear to fold up, creating a RING finger-like structure but forming only one functional Zn2+ ion-binding site. Length = 254

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
           + K+K + +KK+++KK + +K           +   + E E EK +K+ ++ +    +++
Sbjct: 17  IAKEKAKWEKKQEEKKSEAEKLAKM-------SAEEKAEYELEKLEKELEELEAELARRE 69

Query: 282 RKKKRKKK 289
            K + KK 
Sbjct: 70  LKAEAKKM 77

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 20/69 (28%), Positives = 26/69 (37%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           KK K ++KKK KKK        N         + +        +K K K +K   K    
Sbjct: 73  KKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVN 132

Query: 283 KKKRKKKKN 291
           K   KKKK 
Sbjct: 133 KSTNKKKKK 141

Length = 742

>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 226 KKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKK 285
           ++  ++ + ++   R        +    N +      +   KKKK KK K  K+ KRK K
Sbjct: 37  EEENQRLQLRQVISRFTSFESDDQANSGNVSG-----KRVPKKKKIKKPKLRKRTKRKNK 91

Query: 286 RKKKKNQHHRDVWQK 300
           + K     + + ++ 
Sbjct: 92  KIKSLTAFNEENFET 106

The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates. Length = 627

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 17/71 (23%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKK----TTK 278
           +K++++ K   K K KK  K K +             E+E+ K++K++K  ++    T +
Sbjct: 44  EKEEEKAKVAAKAKAKKALKAKIE-------------EKEKAKREKEEKGLRELEEDTPE 90

Query: 279 KKKRKKKRKKK 289
            +  +K R +K
Sbjct: 91  DELAEKLRLRK 101

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/65 (26%), Positives = 40/65 (61%), Gaps = 9/65 (13%)

Query: 226 KKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRKKK 285
           KK   KK+ K ++K+ +++ +   +         EE EE+KK ++K++ +  ++++ +++
Sbjct: 1   KKIGAKKRAKLEEKQARRQQREAEE---------EEREERKKLEEKREGERKEEEELEEE 51

Query: 286 RKKKK 290
           R+KKK
Sbjct: 52  REKKK 56

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 20/79 (25%), Positives = 37/79 (46%)

Query: 222 MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             + KK  KKKKK+         N+ + D     T+  +  E +KK K+K ++   K KK
Sbjct: 22  RSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKK 81

Query: 282 RKKKRKKKKNQHHRDVWQK 300
            + +++K+K +       +
Sbjct: 82  EEAEKEKEKEERFMKALAE 100

This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 13/47 (27%), Positives = 28/47 (59%)

Query: 255 RTSRGEEEEEKKKKKKKKKKKTTKKKKRKKKRKKKKNQHHRDVWQKK 301
           +T   +E + +  K+++K+K+  K++K+KKK K K+    R   ++ 
Sbjct: 91  KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            + K R KK  KKK   +KK+  +  +     R +   + EE    ++++K++     K 
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE--DDGKD 226

Query: 283 KKKRKKKKNQHHRD 296
           ++       +    
Sbjct: 227 RETTTSPMEEDESR 240

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 17/84 (20%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEE---------KKKKKKKKK 273
           K+++ R+K  K ++K++R  K             + GE++++         K KK++KKK
Sbjct: 54  KREELREKIAKAREKRERNSKLGG--------IKTLGEDDDDDDDTKAWLKKSKKRQKKK 105

Query: 274 KKTTKKKKRKKKRKKKKNQHHRDV 297
           +   KK     +++K++   +   
Sbjct: 106 EAERKKALLLDEKEKERAAEYTSE 129

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           KK K+  KK+ +++ K +   + +             +  E KKK + + K K   K K 
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKK------------KAAEAKKKAEAEAKAKAEAKAKA 189

Query: 283 KKKRKKKKN 291
           K +  K K 
Sbjct: 190 KAEEAKAKA 198

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEE----EEKKKKKKKKKKKTTK 278
            KKK    KKK ++KKK  + KK         +   +        +E KKK ++KKK    
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436

Query: 279  KKKRKKKRK----KKKNQHHR 295
            KKK ++ +K    KKK +  +
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAK 1457

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
            KK  + KK    KKK    KKK +  +     +    +++ E+ KK  + KKK  + KK 
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKK-----KADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Query: 283  KKKRKKKKNQHHRDVWQKK 301
            ++ +KK +     D  +KK
Sbjct: 1460 EEAKKKAEEAKKADEAKKK 1478

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 223  KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKK----KKKKKKKKKTTK 278
            KKK    KK ++KKK    KKK +  +    +   +  EE +KK    KKK ++ KK  +
Sbjct: 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346

Query: 279  KKKRKKKRKKKK 290
              K + +    +
Sbjct: 1347 AAKAEAEAAADE 1358

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 22/74 (29%), Positives = 36/74 (48%)

Query: 222  MKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKK 281
             KK  + KKK  + KK +  KK ++  +     +    ++ EEKKK  + KK +  KK +
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561

Query: 282  RKKKRKKKKNQHHR 295
             KKK ++ K     
Sbjct: 1562 EKKKAEEAKKAEED 1575

Length = 2084

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 15/69 (21%), Positives = 48/69 (69%)

Query: 223 KKKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKR 282
           KK+ K ++K+ ++++++ ++++ +  + +   R    +EEEE +++++KKK++  +K++ 
Sbjct: 6   KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65

Query: 283 KKKRKKKKN 291
           ++ RK+++ 
Sbjct: 66  EQARKEQEE 74

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 229 KKKKKKKKKKKRKKKKNQHHRDVWINRTSRGE---EEEEKKKKKKKKKKKTTKKKKRKKK 285
            +KKK KK +      N+ ++D  +  +       ++E K  +K +KK +  K K  KKK
Sbjct: 32  AQKKKGKKGELEITDLNEEYKD--LKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKK 89

Query: 286 RKKKKNQ 292
            KK++ +
Sbjct: 90  AKKEEPK 96

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 226 KKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEE---KKKKKKKKKKKT---TKK 279
           K RKK +  K+ +K KKK      D  I+   + ++ ++   K KKKKKK+KKT    KK
Sbjct: 117 KARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKTYVVAKK 176

Query: 280 KKRKKKRKKKK 290
             + K  + K 
Sbjct: 177 GNKGKAGRPKG 187

This presumed domain is found at the C-terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis. Length = 212

>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 232 KKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKK-KKRKKKRKKKK 290
           K  ++ KK K KK Q   D +   T +  ++   K K KKKKKK       + +  ++ K
Sbjct: 325 KYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAK 384

Query: 291 NQHHRDV 297
           +   + V
Sbjct: 385 SSGKKKV 391

Length = 393

>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit, N-terminal

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 217 IPGFVMKKKKKRKKKKKKKKKKKRKKKK-----------NQHHRDVWINRTSRGEEEEEK 265
           I     +   KRK++KK ++     +               H        + R ++  + 
Sbjct: 128 IERKPKEPGLKRKQRKKAQESATSPESSPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKL 187

Query: 266 KKKKKKKKKKTTKKKKRKKKRKKK 289
                   +K+ K K   KK  KK
Sbjct: 188 SSTASSGDEKSPKSKAAPKKAGKK 211

SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation. Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
KOG4220|consensus	503		99.97
KOG4219|consensus	423		99.97
PHA03234	338	DNA packaging protein UL33; Provisional	99.95
PHA03235	409	DNA packaging protein UL33; Provisional	99.95
PHA02834	323	chemokine receptor-like protein; Provisional	99.95
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.95
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.95
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.93
KOG2087|consensus	363		99.74
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.63
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.63
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.47
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	99.31
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	99.3
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.21
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	99.12
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.76
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	98.43
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	98.43
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	98.39
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	98.31
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	98.22
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	98.03
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	98.03
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	97.76
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	97.66
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	97.65
KOG4193|consensus	610		97.57
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	97.32
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	96.64
KOG4564|consensus	473		96.61
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	96.59
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	96.42
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	96.4
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	96.32
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	95.89
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	95.87
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	95.84
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	95.28
PF10669	121	Phage_Gp23: Protein gp23 (Bacteriophage A118); Int	91.77
PF15086	74	UPF0542: Uncharacterised protein family UPF0542	91.74
KOG2302|consensus	1956		89.26
PF10669	121	Phage_Gp23: Protein gp23 (Bacteriophage A118); Int	87.94
KOG4349|consensus	143		87.75
PRK00247	429	putative inner membrane protein translocase compon	81.02

>KOG4220|consensus

Probab=99.97  E-value=7.9e-33  Score=233.99  Aligned_cols=203  Identities=27%  Similarity=0.486  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~  120 (303)
                      -++++++...++++.++||++|++.+.-++++++..|+||++||+||++++++.+|.+..+.+-+.|++|..+|.++..+
T Consensus        30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLal  109 (503)
T KOG4220|consen   30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLAL  109 (503)
T ss_pred             EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEE-
Q psy16862        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-  199 (303)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-  199 (303)
                      .++...+|++.+++|++|||..|.+|+.|+...|.+++..+|++.|++++++..|. +..|....+..   ....+.|. 
T Consensus       110 DYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPa-Il~WqyivGkr---Tv~~~eC~i  185 (503)
T KOG4220|consen  110 DYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPA-ILFWQYIVGKR---TVPDGECYI  185 (503)
T ss_pred             HHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHH-HHhhHhheeee---ecCCCceEE
Confidence            99999999999999999999999999999999999999999999999999998666 45553333322   22345664 


Q ss_pred             -EEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy16862        200 -FVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQH  247 (303)
Q Consensus       200 -~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~~~~~  247 (303)
                       +.......+-..+..|.+|..+|+++|.+|++..+++.+.....+...
T Consensus       186 QFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~  234 (503)
T KOG4220|consen  186 QFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASL  234 (503)
T ss_pred             EeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence             334455556666788999999999999999999999999888776654

>KOG4219|consensus

Probab=99.97  E-value=1.3e-30  Score=220.94  Aligned_cols=200  Identities=25%  Similarity=0.459  Sum_probs=168.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhcccccccccc
Q psy16862         34 IHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFM  113 (303)
Q Consensus        34 ~~~~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~  113 (303)
                      .........+.+++++++.+++++||+++++++..+|++|+.+|++|+|||+||++++++..++...+.....|.+|..+
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~  107 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY  107 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence            34444558899999999999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccC
Q psy16862        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH  193 (303)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (303)
                      |++..|+..+...+|++++++||+|||.||.||++.+  .+++..+++++++|+++++++.|..+..........  ...
T Consensus       108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~--d~~  183 (423)
T KOG4219|consen  108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLY--DGE  183 (423)
T ss_pred             eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeecc--CCc
Confidence            9999999999999999999999999999999999855  688999999999999999999998765442222211  111


Q ss_pred             CCceEE---------EEeh----hhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        194 HPNVCI---------FVVN----VYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       194 ~~~~c~---------~~~~----~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                      ....|.         ....    ..|..+..++.+++|++++.+.|..|.+.++.++
T Consensus       184 ~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~  240 (423)
T KOG4219|consen  184 SRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRR  240 (423)
T ss_pred             ceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222231         1111    2277778888999999999999999999999876

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.95  E-value=2.5e-27  Score=207.22  Aligned_cols=194  Identities=12%  Similarity=0.070  Sum_probs=142.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccc
Q psy16862         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVI--KHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC  114 (303)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~--~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C  114 (303)
                      ......+..+++.+++++|++||+++++++.  +++++|+++|+|++|||++|++.++ .+|+.+... ...|.+|+..|
T Consensus        28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~lC  105 (338)
T PHA03234         28 LKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAFC  105 (338)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhHH
Confidence            4456888899999999999999999999554  5566689999999999999999976 566655443 45699999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCC-CcccccC
Q psy16862        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD-HKQYRKH  193 (303)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~  193 (303)
                      ++..++.....++|++++++||+|||+||++|.+++.  +.++....+++.|+++++.++|+++.......+ ....|..
T Consensus       106 k~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~  183 (338)
T PHA03234        106 QCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNI  183 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcc
Confidence            9999999999999999999999999999999987542  334444456667999999998886443322111 1122322


Q ss_pred             CCceEEEEehhhHHH---HHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy16862        194 HPNVCIFVVNVYYAL---ISSSISFWIPGFVMKKKKKRKKKKKKKK  236 (303)
Q Consensus       194 ~~~~c~~~~~~~~~~---~~~~~~~~ip~~i~~~~y~~I~~~l~~~  236 (303)
                      ....  ......+..   ....+.+++|+++|+++|..|.+.++++
T Consensus       184 ~~~~--~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~  227 (338)
T PHA03234        184 HISS--KKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL  227 (338)
T ss_pred             cCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2110  011111211   1223357899999999999999999764

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.95  E-value=2.1e-26  Score=205.73  Aligned_cols=199  Identities=15%  Similarity=0.114  Sum_probs=145.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccc-cccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccch
Q psy16862         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIK-HRK-LRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD  115 (303)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~-~~~-~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~  115 (303)
                      ...+.+..+++.+++++|++||+++++++.. ++. .++..++|++|||++|++. ++.+|+.+... ...|..+...|+
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck  106 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK  106 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence            4457889999999999999999999987553 332 2356679999999999987 55788765432 223344578999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCC
Q psy16862        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHP  195 (303)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (303)
                      +..++...+..+|++++++||+|||++|++|.++.. .+++++..+++++|+++++.++|+.++.+....+.........
T Consensus       107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~  185 (409)
T PHA03235        107 FASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGY  185 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCc
Confidence            999999999999999999999999999999986544 4678888899999999999998875443211111100001112


Q ss_pred             ceEEEEeh--------hhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16862        196 NVCIFVVN--------VYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKK  239 (303)
Q Consensus       196 ~~c~~~~~--------~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~  239 (303)
                      ..|.....        ..|.+...++.+++|+++|+++|.+|++.++++.++
T Consensus       186 ~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~  237 (409)
T PHA03235        186 ETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK  237 (409)
T ss_pred             ceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34532211        124445556778999999999999999999887653

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.95  E-value=6.9e-27  Score=204.11  Aligned_cols=192  Identities=19%  Similarity=0.319  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~  120 (303)
                      ..+..+++.+++++|++||+++++++.++++ +++.+++++|||++|++. ++.+|+.+.... ..|.+|+..|++..++
T Consensus        28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~  104 (323)
T PHA02834         28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGV  104 (323)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHH
Confidence            4567899999999999999999998887655 457899999999999986 557887765544 4699999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEE
Q psy16862        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF  200 (303)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  200 (303)
                      ......+|++++++||+|||++|++|++++. .+.+++...++++|+++++.++|+.+.......++...|.... .+..
T Consensus       105 ~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~-~~~~  182 (323)
T PHA02834        105 YFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFND-YHEN  182 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccC-Cccc
Confidence            8889999999999999999999999998654 3456777788899999999998875432111111111222111 1100


Q ss_pred             -EehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        201 -VVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       201 -~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                       .....+.....++.+++|+++++++|.+|++.+++++
T Consensus       183 ~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~  220 (323)
T PHA02834        183 FSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCK  220 (323)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             0111122334467899999999999999999998764

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.95  E-value=3.6e-26  Score=205.10  Aligned_cols=195  Identities=21%  Similarity=0.331  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchH
Q psy16862         40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS  119 (303)
Q Consensus        40 ~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~  119 (303)
                      ......+++.+++++|++||+++++++.+ +++|++++++++|||++|++.+ +.+|+.+... .+.|.+|+..|++..+
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~  173 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISA  173 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHH
Confidence            45677888999999999999999987764 7788999999999999999885 4788877655 3579999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCc--ccc-cCCCc
Q psy16862        120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK--QYR-KHHPN  196 (303)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~  196 (303)
                      +.....+++++.++++++|||+||++|.+++...+++.....++++|+++++.++|+++..........  ... .....
T Consensus       174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~  253 (417)
T PHA02638        174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNY  253 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCC
Confidence            999999999999999999999999999998777777888888999999999999998654321100000  000 00112


Q ss_pred             eEEEEe----------hhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        197 VCIFVV----------NVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       197 ~c~~~~----------~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                      .|....          ...+.+...++.+++|++++++||.+|++.+++.+
T Consensus       254 ~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~  304 (417)
T PHA02638        254 QCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK  304 (417)
T ss_pred             eeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            443211          01223334566789999999999999999997754

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.95  E-value=2e-26  Score=202.68  Aligned_cols=198  Identities=20%  Similarity=0.263  Sum_probs=155.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhch
Q psy16862         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN  118 (303)
Q Consensus        39 ~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~  118 (303)
                      ....+..+++.+++++|++||+++++++.++ ++|++.++++.+||++|++.++ ..|..+.......|..++..|++..
T Consensus        38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~  115 (335)
T PHA03087         38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVS  115 (335)
T ss_pred             chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHH
Confidence            3467788899999999999999999998887 8899999999999999998866 5666665566677888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceE
Q psy16862        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVC  198 (303)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  198 (303)
                      ++......+|++++++||+|||++|++|++|+...+.+++..+++++|+++++.++|+........+.....|.......
T Consensus       116 ~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~  195 (335)
T PHA03087        116 GLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNK  195 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCCc
Confidence            99999999999999999999999999999998888999999999999999999988875544332222222222111100


Q ss_pred             EEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy16862        199 IFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKK  238 (303)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~  238 (303)
                      ...+...+.+...++.+++|+++++++|.+|++.++++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~  235 (335)
T PHA03087        196 TMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK  235 (335)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            0111122223345667899999999999999998887653

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.93  E-value=1.4e-25  Score=188.71  Aligned_cols=180  Identities=29%  Similarity=0.572  Sum_probs=153.4

Q ss_pred             HHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHHHHHHHHHHHHHHHHHHH
Q psy16862         58 GNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISV  137 (303)
Q Consensus        58 ~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iai  137 (303)
                      ||+++++++.++++++++.++++++||++|++.++...|..+.....+.|..++..|++..++..++..++.++++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~   80 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI   80 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999888887777776788999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEEEeh----hhHHHHHhhh
Q psy16862        138 DRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVN----VYYALISSSI  213 (303)
Q Consensus       138 dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~~~~~  213 (303)
                      |||++|++|++|+...+++++...++++|+++++.++|+.+..........     ....|.....    ..+.....++
T Consensus        81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~  155 (257)
T PF00001_consen   81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDG-----SQSFCFIDFSSSSSQIYFIYFFIV  155 (257)
T ss_dssp             HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTC-----CCEEEEESCSSSHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999998654332222211     0445654332    3577778888


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        214 SFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       214 ~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                      .+++|+++++++|.+|++.+++++++...
T Consensus       156 ~~~~p~~~~~~~~~~i~~~~~~~~~~~~~  184 (257)
T PF00001_consen  156 FFILPLIIILICYIRILRKLRRQRKRIKS  184 (257)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHCTCC
T ss_pred             ccccceeeeeeeccccccccccccccccc
Confidence            99999999999999999999998876554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=99.74  E-value=6e-18  Score=142.71  Aligned_cols=202  Identities=18%  Similarity=0.242  Sum_probs=152.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhc-------ccccc
Q psy16862         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-------DEWYF  109 (303)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~-------~~~~~  109 (303)
                      +.....+.-+...++.+++++||++|+......+...++..+++.|||++|+++++.......+....       ..|..
T Consensus        20 dllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~   99 (363)
T KOG2087|consen   20 DLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ   99 (363)
T ss_pred             HhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            33446666677788899999999999998888877778999999999999999988665554443322       23455


Q ss_pred             ccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcc
Q psy16862        110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQ  189 (303)
Q Consensus       110 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~  189 (303)
                      +...|.+.+|+..++.-.|++.++.+++||++.|.+|++-.+....+....+++..|+.+++.++.|.+ +...+.....
T Consensus       100 tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~-g~s~Y~~~~v  178 (363)
T KOG2087|consen  100 TGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLF-GISSYGASSV  178 (363)
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcccc-CCCCCcccce
Confidence            678999999999999999999999999999999999999777766777899999999999999999954 3211111111


Q ss_pred             cccCCCceEEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        190 YRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       190 ~~~~~~~~c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                      +-..+.+.+   .+.-|.....+....+.++++.++|.+++..+++.......
T Consensus       179 ClPL~~~~~---~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~  228 (363)
T KOG2087|consen  179 CLPLHIEEP---LSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL  228 (363)
T ss_pred             eeecccCCc---cchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc
Confidence            111111111   11215556667778899999999999999999886554443

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.63  E-value=7e-16  Score=130.18  Aligned_cols=119  Identities=26%  Similarity=0.426  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHHHHHHHHHHHHHH
Q psy16862         53 ITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHL  132 (303)
Q Consensus        53 i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  132 (303)
                      ++|++||+.++..+.++|++|++.+++++.+|++|++.++..+|......  +........|....+...++.......+
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~   79 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM   79 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999888887766333  2334567799999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhh
Q psy16862        133 CCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIIS  173 (303)
Q Consensus       133 ~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~  173 (303)
                      ++|++||++||+.|.+|+...+.+..........+.+....
T Consensus        80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~  120 (257)
T PF10320_consen   80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFT  120 (257)
T ss_pred             HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHH
Confidence            99999999999999999999888865555555555555543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.63  E-value=8.8e-15  Score=124.99  Aligned_cols=186  Identities=20%  Similarity=0.277  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccc-hhchHHHHHHHHHH
Q psy16862         50 FIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC-DVWNSFDVYFSTAS  128 (303)
Q Consensus        50 ~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~~s  128 (303)
                      +++++|++.|.++++.+.+.+.++++.+++..+.|++|.+.++..+.........+.....+... .+.+.....+...+
T Consensus         2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~   81 (274)
T PF10328_consen    2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG   81 (274)
T ss_pred             eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999886666555555555333333333 34478888888999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccc-c--ccccCCCcccccCCCceEEEEehhh
Q psy16862        129 ILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIML-G--WYTTPDHKQYRKHHPNVCIFVVNVY  205 (303)
Q Consensus       129 ~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~c~~~~~~~  205 (303)
                      .++.++||++|+.||..|.+|+++.+.+.+..+++++|++++....+..+. +  .....+.-.+....++.|...    
T Consensus        82 ~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~----  157 (274)
T PF10328_consen   82 PLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNY----  157 (274)
T ss_pred             HHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchh----
Confidence            999999999999999999999999999999999999999999666555432 1  122222222222233355432    


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy16862        206 YALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKR  240 (303)
Q Consensus       206 ~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~  240 (303)
                       ..........+-.+++.+++..++.++++.+++.
T Consensus       158 -~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~  191 (274)
T PF10328_consen  158 -SWYFDFYKNFILVIISNILNIITFIKLRKFRKKI  191 (274)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence             1211122233444667778888888888777655

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.47  E-value=5.5e-13  Score=116.48  Aligned_cols=195  Identities=16%  Similarity=0.196  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccc-chhHHHHHHHHHhHHHHhhhhhHHHHHHhccc-----ccccc----ccchhchH
Q psy16862         50 FIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAIVSLTDE-----WYFGY----FMCDVWNS  119 (303)
Q Consensus        50 ~i~i~gl~~N~~vl~~i~~~~~~~~-~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~-----~~~~~----~~C~~~~~  119 (303)
                      +++++|+++|++.++++.| |.+|+ +.|.++..+|++|++..+..++..+.......     .....    ....+...
T Consensus         5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~   83 (318)
T PF10324_consen    5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES   83 (318)
T ss_pred             EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence            3578999999999998876 44565 88999999999999998887777665444321     01111    12233456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcccchhhhHHHHHHHHhhhhhhhhccccccccccCC----CcccccC
Q psy16862        120 FDVYFSTASILHLCCISVDRYYAIVKPLQY--PIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD----HKQYRKH  193 (303)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~aI~~P~~~--~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~----~~~~~~~  193 (303)
                      +...+..+|.|..++||+.|+++|.+|+..  +.+.+++.+...+.++++++.+.+.+..+.......+    ....|..
T Consensus        84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~  163 (318)
T PF10324_consen   84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG  163 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence            777888999999999999999999999864  3466778888888888888888887775432222111    1122321


Q ss_pred             CCc---eEEEE-----e----h----hhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy16862        194 HPN---VCIFV-----V----N----VYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKN  245 (303)
Q Consensus       194 ~~~---~c~~~-----~----~----~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~~~  245 (303)
                      .+.   ...+.     .    +    ..+.+...++.-++|.++..++.+.+++.+|+.++++++..+
T Consensus       164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~  231 (318)
T PF10324_consen  164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSS  231 (318)
T ss_pred             ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccc
Confidence            110   00000     0    1    123333445557899999999999999999999988876653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=99.31  E-value=3.1e-10  Score=97.95  Aligned_cols=204  Identities=12%  Similarity=0.112  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhc
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKH---RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~---~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~  117 (303)
                      ..+..++..+..++|++||++++.+...+   ++.-.|.+.++.+||+++++.............+.......+..++..
T Consensus         6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (303)
T PF05296_consen    6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII   85 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence            55668888899999999999999887753   333469999999999999998776555555555555555566788888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cccchhhhHHHHHHHHhhhh--hhhhccccccccccCCCcccc
Q psy16862        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYP----IIMNQNTVLLMLSNVWILPG--IISFTPIMLGWYTTPDHKQYR  191 (303)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~----~~~t~~~~~~~i~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~  191 (303)
                      .++..+....|.|..+++++--++-|+...+.-    ++.=.+.+..++.+.+++++  ...+|.. ............+
T Consensus        86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~-~~~~~~~~~~~~~  164 (303)
T PF05296_consen   86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLF-IDNHINNNNTNNS  164 (303)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-eeeeeccccccCC
Confidence            899999999999999999999999888654311    11112224455666777777  3333321 1111111111111


Q ss_pred             cCCCceEE-EEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy16862        192 KHHPNVCI-FVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKN  245 (303)
Q Consensus       192 ~~~~~~c~-~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~~~  245 (303)
                      ........ ......+......+..++|+++++++...++..++||.|+.++...
T Consensus       165 ~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~  219 (303)
T PF05296_consen  165 RNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNAT  219 (303)
T ss_pred             CcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            11111111 1122233333345788999999999999999999999999986654

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=99.30  E-value=2.6e-10  Score=92.11  Aligned_cols=161  Identities=16%  Similarity=0.080  Sum_probs=109.6

Q ss_pred             cccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16862         70 RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQY  149 (303)
Q Consensus        70 ~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~  149 (303)
                      ++++...+.+++||.++|++.++..+...+.....+.-..++..|...+++.+++..++.+..++||++-|+.|.+|-..
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~  109 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK  109 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            34456667799999999999998777656666666555667889999999999999999999999999999999999221


Q ss_pred             ----Cc-----ccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEEEe-hhhHHHHHhhhhhhhhh
Q psy16862        150 ----PI-----IMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVV-NVYYALISSSISFWIPG  219 (303)
Q Consensus       150 ----~~-----~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~ip~  219 (303)
                          +.     ...+..+..+..++|++...++...  .+....       ......|..+. ...+.....-+..++..
T Consensus       110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~--~~~~~Y-------~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~  180 (201)
T PF11710_consen  110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG--LGGPGY-------GPAGAWCWIPSRYEWYRLWLHYIWRFIII  180 (201)
T ss_pred             cccccccccceEEeeeeeehHHHHHHHHHHHHHHhc--cccCcc-------cccCcEEEECCCcHHHHHHHHHHHHHHHH
Confidence                10     0112223333445555544443222  011111       12344564332 33456666666677778


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q psy16862        220 FVMKKKKKRKKKKKKKKKKK  239 (303)
Q Consensus       220 ~i~~~~y~~I~~~l~~~~~~  239 (303)
                      +++++.|..|+..+|++.|+
T Consensus       181 ~~~i~iY~~if~~lrr~~~~  200 (201)
T PF11710_consen  181 FAIIIIYIAIFFYLRRRIRR  200 (201)
T ss_pred             HHHHHHHHHHHHHHhhhhcc
Confidence            89999999999999998764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.21  E-value=8.9e-11  Score=100.47  Aligned_cols=181  Identities=14%  Similarity=0.188  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHhhcccc----cccchhHHHHHHHHHhHHHHhhhhhHHHHHHhc---c-ccccccccchhchHHHHH
Q psy16862         52 IITAILGNLLVIISVIKHRK----LRIITNYFVVSLAFADLLVALCVMPFNAIVSLT---D-EWYFGYFMCDVWNSFDVY  123 (303)
Q Consensus        52 ~i~gl~~N~~vl~~i~~~~~----~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~---~-~~~~~~~~C~~~~~~~~~  123 (303)
                      +++.++..+.+++++.+.|+    ++++.+.++.+.+++|++..+............   + ....++...++.....+.
T Consensus         5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~   84 (283)
T PF10323_consen    5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY   84 (283)
T ss_pred             EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence            45667777888877776544    458999999999999999877654433332221   1 112333445566667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-CCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEEE-
Q psy16862        124 FSTASILHLCCISVDRYYAIVKPL-QYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFV-  201 (303)
Q Consensus       124 ~~~~s~~~l~~iaidRy~aI~~P~-~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~-  201 (303)
                      .........+++|++||.||++|. ++.+..++.+...++++-|+.+++.++|...-.....+...      ......+ 
T Consensus        85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~------~~~~~~d~  158 (283)
T PF10323_consen   85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEE------NMSLFVDP  158 (283)
T ss_pred             HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeeccc------ceeeecCH
Confidence            778889999999999999999999 77888888888899999999999998875332221111111      1111111 


Q ss_pred             ehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy16862        202 VNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKK  238 (303)
Q Consensus       202 ~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~  238 (303)
                      ...........+...+.++..+++|..++..+|++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k  195 (283)
T PF10323_consen  159 EFIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK  195 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1111222333444556677889999999999998774

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=99.12  E-value=1e-08  Score=87.80  Aligned_cols=129  Identities=22%  Similarity=0.322  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHHH
Q psy16862         42 IIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFD  121 (303)
Q Consensus        42 ~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~  121 (303)
                      -....+..+..+++++|-++++..+...+++|++.+.++..++++|++..+..+...    ..+....++..|.+++++.
T Consensus         7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafli   82 (303)
T PF05462_consen    7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLI   82 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHH
Confidence            345566677789999999999999999999999999999999999999876543221    1122344577999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhcccc
Q psy16862        122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIM  178 (303)
Q Consensus       122 ~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~  178 (303)
                      +++..++.+..++||++=|+.++++..    -..+.-....+++|.++++.++.++.
T Consensus        83 q~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~  135 (303)
T PF05462_consen   83 QFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLI  135 (303)
T ss_pred             HHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987533    13555677888999999998887754

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.76  E-value=2e-07  Score=80.36  Aligned_cols=193  Identities=13%  Similarity=0.115  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchh-
Q psy16862         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV-  116 (303)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~-  116 (303)
                      +..+.+.++...+.+++-.+..+..++++.+++..+.+.+-++.-||+.|++.........-....     .|...|.. 
T Consensus        29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i-----~G~vfC~~P  103 (313)
T PF10321_consen   29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI-----FGAVFCSYP  103 (313)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh-----cCccccCCc
Confidence            445778889999999999999999999999877777899999999999999986543222222222     24445554 


Q ss_pred             -----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHH--HhhhhhhhhccccccccccCCCcc
Q psy16862        117 -----WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNV--WILPGIISFTPIMLGWYTTPDHKQ  189 (303)
Q Consensus       117 -----~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~--w~~~~~~~~~~~~~~~~~~~~~~~  189 (303)
                           .+.+...+..++......++++|..-+..|.........++....+.+.  +.+-..+-.+|..+..    +...
T Consensus       104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns----~~~s  179 (313)
T PF10321_consen  104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNS----EYMS  179 (313)
T ss_pred             hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCC----Ccce
Confidence                 3445566667888899999999999999987665565655544333333  2222222234433321    0111


Q ss_pred             cccCCCceEEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy16862        190 YRKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKR  240 (303)
Q Consensus       190 ~~~~~~~~c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~  240 (303)
                      +. .++..-+......|.-....+..++-.+.+.++|..+...++++.+..
T Consensus       180 w~-fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~  229 (313)
T PF10321_consen  180 WF-FDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS  229 (313)
T ss_pred             Ee-cCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            10 001000001112233333344445556778889999998888876544

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.43  E-value=1.3e-06  Score=73.20  Aligned_cols=172  Identities=15%  Similarity=0.043  Sum_probs=108.1

Q ss_pred             ccchhHHHHHHHHHhHHHHhh-hhhHHHHHHhccccccccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---
Q psy16862         73 RIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQ---  148 (303)
Q Consensus        73 ~~~~~~ll~~Lai~Dl~~~l~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~---  148 (303)
                      .+|.+..+.+||++|++..+. ++|.... .+... .+++..|++..++..++-..|+.+.+++++..-+.|.-...   
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w~   85 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMA-FFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRWA   85 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchhh
Confidence            579999999999999988765 3443322 22222 36899999999999999999999999999966665553221   


Q ss_pred             CCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEEEehhhH----HHHHhhhhhhhhhhHHHH
Q psy16862        149 YPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYY----ALISSSISFWIPGFVMKK  224 (303)
Q Consensus       149 ~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~----~~~~~~~~~~ip~~i~~~  224 (303)
                      .-+...++.....+.+.|++.+++............+............|........    ......+.-++.+.+|..
T Consensus        86 ~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~  165 (265)
T PF03402_consen   86 ELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMIW  165 (265)
T ss_pred             hhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHHh
Confidence            1112244556777888999988876433221111111111111123356754322111    112223334566778888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcc
Q psy16862        225 KKKRKKKKKKKKKKKRKKKKNQ  246 (303)
Q Consensus       225 ~y~~I~~~l~~~~~~~~~~~~~  246 (303)
                      ..+.++..+.||+++.+..++.
T Consensus       166 aSgyMV~~L~RH~q~VqhIhs~  187 (265)
T PF03402_consen  166 ASGYMVFLLYRHHQQVQHIHSS  187 (265)
T ss_pred             hhhhheeeeeecccccccCcCC
Confidence            8888899999999888776553

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.43  E-value=5.3e-06  Score=71.57  Aligned_cols=125  Identities=17%  Similarity=0.219  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhcc-----------cccccccc
Q psy16862         46 MLMCFIIITAILGNLLVIISVIKHR-KLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD-----------EWYFGYFM  113 (303)
Q Consensus        46 ~~~~~i~i~gl~~N~~vl~~i~~~~-~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~-----------~~~~~~~~  113 (303)
                      ++..+.+++|++.|+++++.+.++. +.-+...+++.|-|+.|++.++...... ......           --..|+..
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~   81 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF   81 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence            3567889999999999998887653 3335778999999999999876543322 111111           12356778


Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhcc
Q psy16862        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTP  176 (303)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~  176 (303)
                      |.....+...+...+.+++.+--..||..+.++..     ++++....+.+.+..++...+..
T Consensus        82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~  139 (292)
T PF10317_consen   82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFF  139 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999998744     55666677777777777765544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.39  E-value=7.9e-06  Score=69.07  Aligned_cols=132  Identities=12%  Similarity=0.055  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhcc--cccc-ccccchhc
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTD--EWYF-GYFMCDVW  117 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~--~~~~-~~~~C~~~  117 (303)
                      ..+..++..+..++....|..+++.+...|+.+++.-.++....+.|.+.++...+.........  .... ....--+.
T Consensus         5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~   84 (273)
T PF10316_consen    5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence            45566777788889999999999988876664456566666789999999887766544443321  1111 22222233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhh
Q psy16862        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGII  172 (303)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~  172 (303)
                      +................||+||.+|+..|..|+....+-....+++++...++.-
T Consensus        85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~d  139 (273)
T PF10316_consen   85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLFD  139 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHHH
Confidence            4455555577889999999999999999988776544443333333333333333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.31  E-value=8.1e-05  Score=65.20  Aligned_cols=131  Identities=9%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHH---HHHhc--c--cccccccc
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNA---IVSLT--D--EWYFGYFM  113 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~---~~~~~--~--~~~~~~~~  113 (303)
                      ..+..++..+++++|++.++..+......+.+|.-..+++....++.++.++..+....   ..+..  +  +...+...
T Consensus        16 l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~   95 (324)
T PF10292_consen   16 LRLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYR   95 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhH
Confidence            34455667788889999999988888888888877788888888888888765433322   22222  1  23346678


Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhh
Q psy16862        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGII  172 (303)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~  172 (303)
                      |...-....++......+.+++++||++|.++.-+|.+. ...-...+..+.|++++..
T Consensus        96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~  153 (324)
T PF10292_consen   96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLI  153 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999888865 2333344444455554443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.22  E-value=5.1e-07  Score=75.69  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=3.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHHHHHHHH
Q psy16862         47 LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST  126 (303)
Q Consensus        47 ~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~  126 (303)
                      +..+.+.+++++-++.+..+...|++|+..+....||++++++..+..+.. ......+.....+..|...+.+.+++..
T Consensus         6 i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~l   84 (242)
T PF00002_consen    6 ISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFL   84 (242)
T ss_dssp             HHHHHHH-------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHH
Confidence            334444555555555555555557777777888899999999886654322 1111111111123359999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhcccccc
Q psy16862        127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLG  180 (303)
Q Consensus       127 ~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~  180 (303)
                      ++...+.+.+++-|..+..+...    .+++.....+..|.+++++........
T Consensus        85 a~f~Wm~~~~~~l~~~~~~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~  134 (242)
T PF00002_consen   85 ASFFWMLVEAFYLYRLLVKVFNS----SRRRFWWYYLIGWGIPALIVVISVAVN  134 (242)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhheeEEEeecc----cchhhheeeeeeecCcceeeeeeeeec
Confidence            99999999999999999887331    245556677788999888876664443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.03  E-value=5.3e-05  Score=64.72  Aligned_cols=121  Identities=13%  Similarity=0.212  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcccc--c-ccchhHHHHHHHHHhHHHHhhhhhH-HHHHHhc-------cccccccccchhch
Q psy16862         50 FIIITAILGNLLVIISVIKHRK--L-RIITNYFVVSLAFADLLVALCVMPF-NAIVSLT-------DEWYFGYFMCDVWN  118 (303)
Q Consensus        50 ~i~i~gl~~N~~vl~~i~~~~~--~-~~~~~~ll~~Lai~Dl~~~l~~~~~-~~~~~~~-------~~~~~~~~~C~~~~  118 (303)
                      +-++.+++.+..+++++.++++  . +++.+.+...-++.|++.-+...+. -+.....       ......+.......
T Consensus         6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~   85 (275)
T PF02118_consen    6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY   85 (275)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence            3466778888888888887776  3 6677777777777777765443332 1111100       00122344566667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhh
Q psy16862        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGI  171 (303)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~  171 (303)
                      ++...+..+.......|+++|+.+|..|.++.+.-++.. ..+++++.++++.
T Consensus        86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~  137 (275)
T PF02118_consen   86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFS  137 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHH
Confidence            788888899999999999999999999999877555333 2333334444433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.03  E-value=0.0014  Score=57.43  Aligned_cols=123  Identities=18%  Similarity=0.236  Sum_probs=83.6

Q ss_pred             CCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch-hHHHHHHHHHhHHHHhhhhhH--HHHHHhc
Q psy16862         28 FPTNSTIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIIT-NYFVVSLAFADLLVALCVMPF--NAIVSLT  104 (303)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~-~~ll~~Lai~Dl~~~l~~~~~--~~~~~~~  104 (303)
                      .+++...........+..++..++.++++++....+-.+.++.-..+.+ .+++.+|..+++=........  .+...+.
T Consensus         7 As~~~~~~~tS~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~   86 (328)
T PF02117_consen    7 ASEDQLEALTSWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFF   86 (328)
T ss_pred             CCHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333334444677778888888899999988888888776666544 555567777766443322111  1111111


Q ss_pred             ---c--ccccccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16862        105 ---D--EWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYP  150 (303)
Q Consensus       105 ---~--~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~  150 (303)
                         +  ...+.+..|.....+..++....++..+++++||.+|-..|-.+.
T Consensus        87 ~~~dpC~i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~  137 (328)
T PF02117_consen   87 YSDDPCSILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS  137 (328)
T ss_pred             cCCCCeeeEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence               1  344677799999999999999999999999999999999886543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=97.76  E-value=0.0012  Score=54.66  Aligned_cols=176  Identities=13%  Similarity=0.141  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhh----hhHHHHHHhccccccccccchhchHHHHHHHHHHHHHH
Q psy16862         57 LGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV----MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHL  132 (303)
Q Consensus        57 ~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  132 (303)
                      .|-.+++.++....-.+-+...++..|.++-++...+.    .|..+......+.. .+..-.+..++..++.++-.++-
T Consensus        30 t~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~idf~h~siLfsN  108 (305)
T PF04789_consen   30 TGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLIDFCHYSILFSN  108 (305)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHHHHHHHHHHHH
Confidence            33344444444444334577889999988887765443    34444333333222 22334455677888889999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccc-cccCC--Cc--ccccCCCceEEEEehhhHH
Q psy16862        133 CCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW-YTTPD--HK--QYRKHHPNVCIFVVNVYYA  207 (303)
Q Consensus       133 ~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~c~~~~~~~~~  207 (303)
                      .+||++|....-.-..-.+.....-..+-+..+|++++........-+- +..+.  .+  ..|+.....-.........
T Consensus       109 lviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~Iq  188 (305)
T PF04789_consen  109 LVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQ  188 (305)
T ss_pred             HHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchh
Confidence            9999999876654333334455677778888899999887544432211 11111  11  1233332222334445556


Q ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHH
Q psy16862        208 LISSSISFWIPGFVMKKKKKRKKKKKK  234 (303)
Q Consensus       208 ~~~~~~~~~ip~~i~~~~y~~I~~~l~  234 (303)
                      .+..++.+.+|+.+. +.|+.+..++.
T Consensus       189 iiE~ilQ~~IPi~Il-~iYiAIIiKI~  214 (305)
T PF04789_consen  189 IIEIILQFGIPIFIL-VIYIAIIIKII  214 (305)
T ss_pred             HHHHHHHHhHHHHHH-HHHHHHHHHHH
Confidence            677888899997554 45555554443

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.66  E-value=0.00076  Score=58.43  Aligned_cols=196  Identities=16%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-cccccchhHHHH---HHHHHhHHHHhhhhhHHHHHHhccccccccccchh---
Q psy16862         44 KGMLMCFIIITAILGNLLVIISVIKH-RKLRIITNYFVV---SLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV---  116 (303)
Q Consensus        44 ~~~~~~~i~i~gl~~N~~vl~~i~~~-~~~~~~~~~ll~---~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~---  116 (303)
                      ....+=++++++++.|.+.++.+..+ +++.+-.++++.   ...++|+-.+++.-|..+.....+ +..| ..|..   
T Consensus        11 li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G-~l~~~f~i   88 (303)
T PF10327_consen   11 LINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVG-FLARYFGI   88 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEe-ehhhcCCC
Confidence            34566677899999999999877654 444443333332   356789988888888766655543 1222 23333   


Q ss_pred             ----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCccccc
Q psy16862        117 ----WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRK  192 (303)
Q Consensus       117 ----~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (303)
                          ...+..+......-.++.--+-|+.+|.+..+.+. .++..-.....+..+..++..... .......++...+-.
T Consensus        89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~-~~~~~s~eeq~~yI~  166 (303)
T PF10327_consen   89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICF-YFSGMSREEQMEYIR  166 (303)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHH-HhcCCCHHHHHHHHH
Confidence                33344444555556666667789999999876443 233333333333333333332222 111111111111111


Q ss_pred             CC-----------CceEEEEeh--hhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy16862        193 HH-----------PNVCIFVVN--VYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKK  243 (303)
Q Consensus       193 ~~-----------~~~c~~~~~--~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~  243 (303)
                      ..           +..-.++.+  .....+...++.++..++..+++..+++.+++.+++..+.
T Consensus       167 ~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~  230 (303)
T PF10327_consen  167 ENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQ  230 (303)
T ss_pred             hhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            11           111112222  2233444455566677788888899999888877665543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.65  E-value=4.6e-05  Score=66.28  Aligned_cols=102  Identities=11%  Similarity=0.185  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccc-cchhHHHHHHHHHhHHHHhhhhhHHHHHHhc----------cccccccccchhc
Q psy16862         49 CFIIITAILGNLLVIISVIKHRKLR-IITNYFVVSLAFADLLVALCVMPFNAIVSLT----------DEWYFGYFMCDVW  117 (303)
Q Consensus        49 ~~i~i~gl~~N~~vl~~i~~~~~~~-~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~----------~~~~~~~~~C~~~  117 (303)
                      -+.++++++.|++.++.+.++.+.. ....+++...|+.|++.+++-....-.....          +.+..+.......
T Consensus         6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (307)
T PF10326_consen    6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence            3567889999999999887653333 3456677788999998876543322111111          1122334445555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16862        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYP  150 (303)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~  150 (303)
                      ..+...+...+...++.--+.||.++++|.+.+
T Consensus        86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~  118 (307)
T PF10326_consen   86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR  118 (307)
T ss_pred             hhhhhhhHHHHHHHHHhHhhhheeeeccchhhc
Confidence            666677777788888888889999999998643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>KOG4193|consensus

Probab=97.57  E-value=0.0024  Score=60.07  Aligned_cols=167  Identities=16%  Similarity=0.124  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccc-cc-cchhchHHHHHHHHH
Q psy16862         50 FIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG-YF-MCDVWNSFDVYFSTA  127 (303)
Q Consensus        50 ~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~-~~-~C~~~~~~~~~~~~~  127 (303)
                      +-+++++++=.+.+++..--+++++..+....+|+++=++.-+        .++.+.|..+ .. .|...+++..++..+
T Consensus       328 VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l--------~fL~~~~~~~~~~~~C~~~a~llhff~La  399 (610)
T KOG4193|consen  328 VGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL--------LFLLGIDRTSTSVVLCIAAAILLHFFFLA  399 (610)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--------HHhcccccccCcccccHHHHHHHHHHHHH
Confidence            3334444444444444444455554447777788877222211        1111222222 22 799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEEEehhhHH
Q psy16862        128 SILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYA  207 (303)
Q Consensus       128 s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  207 (303)
                      ..+.+.+++++-|+.++.-+.   ....++...+....|...+++.............     ....+..|.......+.
T Consensus       400 aF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-----~~~~~~~CWl~~~~~~~  471 (610)
T KOG4193|consen  400 AFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-----QYGTPRVCWLDTQNGFI  471 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-----ccccCCceEEecCCceE
Confidence            999999999999997765443   2234455555468999998887766544332211     11223337655444433


Q ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        208 LISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       208 ~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                      +.     |+-|+.+++.+++.++...-.+-
T Consensus       472 ~~-----F~GPv~~ii~~Ni~~Fv~t~~~l  496 (610)
T KOG4193|consen  472 WS-----FLGPVTLIILVNIVMFVVTLKKL  496 (610)
T ss_pred             EE-----EehHHHHHHHHHHHHHHHHHHHH
Confidence            32     67788888877765555544433

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=97.32  E-value=0.013  Score=51.02  Aligned_cols=128  Identities=20%  Similarity=0.255  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccc--chhHHHHHHHHHhHHHHhhhhhHHHHHHhccccc--------
Q psy16862         43 IKGMLMCFIIITAILGNLLVIISVIKHRK----LRI--ITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWY--------  108 (303)
Q Consensus        43 ~~~~~~~~i~i~gl~~N~~vl~~i~~~~~----~~~--~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~--------  108 (303)
                      .+..+.+.-..+|+.|-++-+.--.+...    ..+  ...-.+..||++|++.++..+....+++......        
T Consensus        28 ~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~  107 (405)
T PF02101_consen   28 AFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNG  107 (405)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCC
Confidence            34444555556666665544442211100    011  2356889999999999887666555544332111        


Q ss_pred             ---cccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhcc
Q psy16862        109 ---FGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTP  176 (303)
Q Consensus       109 ---~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~  176 (303)
                         .....|.....-.++++.++.|.+.+-|+|-|+.+.+--.      .......-...|..+.++..-.
T Consensus       108 ~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag------~~~~~lYH~~aWgl~~lL~~~G  172 (405)
T PF02101_consen  108 TDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAG------RSTIWLYHMMAWGLPALLCAEG  172 (405)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCC------CcchhHHHHHHHHHHHHHHHhc
Confidence               1235888877777788899999999999999998865321      1223455667788888876544

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.64  E-value=0.26  Score=42.68  Aligned_cols=132  Identities=9%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccc--cccch---hHHHHHHHHHhHHHHhhhhhHHHHHHhc----cccccccccc
Q psy16862         44 KGMLMCFIIITAILGNLLVIISVIKHRK--LRIIT---NYFVVSLAFADLLVALCVMPFNAIVSLT----DEWYFGYFMC  114 (303)
Q Consensus        44 ~~~~~~~i~i~gl~~N~~vl~~i~~~~~--~~~~~---~~ll~~Lai~Dl~~~l~~~~~~~~~~~~----~~~~~~~~~C  114 (303)
                      .....=.+.++++..|++..+.+.++..  +++.-   -.+-....+.|+..+++..|........    |-...-..-.
T Consensus         6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~   85 (302)
T PF10318_consen    6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence            3455566778899999999998886532  22211   2222234568888888877754433222    2111112345


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccc
Q psy16862        115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPI  177 (303)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~  177 (303)
                      .+..++..........+++.+--+||.++..+.+...  .++.-....++.++++.....|..
T Consensus        86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~--~~~~r~~~~~~~y~~~~~~~~~~~  146 (302)
T PF10318_consen   86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSL--WKKIRIIFIIFNYIIAFLFFIPIY  146 (302)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccccc--chhhHHHHHHHHHHHHHHHHHHHh
Confidence            5566666777777778888888999999996643111  122233344444555555554543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>KOG4564|consensus

Probab=96.61  E-value=0.15  Score=46.39  Aligned_cols=179  Identities=14%  Similarity=0.059  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccc------------ccccccc
Q psy16862         46 MLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE------------WYFGYFM  113 (303)
Q Consensus        46 ~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~------------~~~~~~~  113 (303)
                      +++.+-..++++.=++.+.++..-|++|=..|++=.||.++=++-++..+...........            -..+...
T Consensus       149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (473)
T KOG4564|consen  149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG  228 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence            5666666666766667777777788888778899899999888887766555443332211            1256779


Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccC
Q psy16862        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH  193 (303)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (303)
                      |+...++...+..+.-+.+.+=.+.-|..+.--...    .++.....+.+.|.+.+++..+=.+ .....++.  .|..
T Consensus       229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai-~r~~~~d~--~CW~  301 (473)
T KOG4564|consen  229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAI-VRLYLEDT--GCWD  301 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHh-Hheeeccc--cccc
Confidence            999988888888888888888888777766654331    2466677888889999888655433 33323332  2222


Q ss_pred             CCceEEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy16862        194 HPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKK  238 (303)
Q Consensus       194 ~~~~c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~  238 (303)
                      ..       .........-...++++++-.++.+.|++.+-++-|
T Consensus       302 ~~-------~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr  339 (473)
T KOG4564|consen  302 SN-------DTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLR  339 (473)
T ss_pred             cC-------CCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22       111111222233445666677777778777766554

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.59  E-value=0.0016  Score=49.60  Aligned_cols=63  Identities=14%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhcccc
Q psy16862        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIM  178 (303)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~  178 (303)
                      ....+..++.....+..++|+++|-..|.+|+....+.+.++.++.+.++.++.+..-+.|.+
T Consensus        46 ~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~  108 (153)
T PF03383_consen   46 EVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF  108 (153)
T ss_pred             EEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence            345567778888999999999999999999999777899999999998888888777767754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=96.42  E-value=0.38  Score=42.04  Aligned_cols=139  Identities=12%  Similarity=0.153  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHH-H-hc-c----------cc
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIV-S-LT-D----------EW  107 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~-~-~~-~----------~~  107 (303)
                      .-..-..+.+...+..+.+++.+.++.-+.+.-.-...-+..++++-++.++..+...+.. . .. +          ..
T Consensus         8 ~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~   87 (328)
T PF01534_consen    8 KEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD   87 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence            3444556666667777777777777776655334445666677777666655444433331 0 00 0          11


Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccc
Q psy16862        108 YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW  181 (303)
Q Consensus       108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~  181 (303)
                      ..++..|.+...+.+++..++...-+.+++.=|++....-.+..+  .++....-++.|.++++..+.....+.
T Consensus        88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i--~~~s~yfH~~aW~iP~~~ti~vL~~~~  159 (328)
T PF01534_consen   88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAI--EKKSSYFHLVAWGIPAVLTIAVLALRK  159 (328)
T ss_pred             CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchh--hhhcchhhhHHhhhhHHHHHHHHHhcc
Confidence            234679999999999998888888888899999988765442322  355666788899999998877655444

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.40  E-value=0.089  Score=45.12  Aligned_cols=119  Identities=13%  Similarity=0.073  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccc-cchhHHHHHHHHHhHHHHhhhhhH--HHHHHh-------ccccccccc-c
Q psy16862         45 GMLMCFIIITAILGNLLVIISVIKHRKLR-IITNYFVVSLAFADLLVALCVMPF--NAIVSL-------TDEWYFGYF-M  113 (303)
Q Consensus        45 ~~~~~~i~i~gl~~N~~vl~~i~~~~~~~-~~~~~ll~~Lai~Dl~~~l~~~~~--~~~~~~-------~~~~~~~~~-~  113 (303)
                      -.+--+.++++.+.|-+.++.+..+++.+ ....++++.-|+-|++..+.-+..  .+...-       .++|-.... .
T Consensus         8 ~~~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l   87 (310)
T PF10319_consen    8 HYIPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSEL   87 (310)
T ss_pred             HHHHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchH
Confidence            34445678889999999999888877765 366788899999999987764332  222211       112211111 1


Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHH
Q psy16862        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLS  163 (303)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~  163 (303)
                      -.......-.+..+|-..+..=-+.||+++.+|....+...+......+.
T Consensus        88 ~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~  137 (310)
T PF10319_consen   88 GQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSIL  137 (310)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHH
Confidence            11111222223334445566667889999999966444444444333333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=96.32  E-value=0.11  Score=41.49  Aligned_cols=41  Identities=15%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16862        108 YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQ  148 (303)
Q Consensus       108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~  148 (303)
                      ...-.+|.+.--.......+.....+++|++||+.|.+-.+
T Consensus       111 ~ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r  151 (226)
T PF06681_consen  111 QYTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR  151 (226)
T ss_pred             eEEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence            34667898876666666666666777899999999998655

The function of this family is unknown.

>PF03125 Sre: C

Probab=95.89  E-value=0.66  Score=41.43  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHh---HHHHhhhhhHHHHHHhcc---------ccc
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFAD---LLVALCVMPFNAIVSLTD---------EWY  108 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~D---l~~~l~~~~~~~~~~~~~---------~~~  108 (303)
                      ..+..++-.++.+++..-....+.++.+-+..|.-.+++.......-   ++.-+...|........+         .|.
T Consensus        26 ~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~t  105 (365)
T PF03125_consen   26 YIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWWT  105 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhhc
Confidence            44555555566666666666666777777777765555555444333   333333444433222111         111


Q ss_pred             ccc-----------ccc-hhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy16862        109 FGY-----------FMC-DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPII  152 (303)
Q Consensus       109 ~~~-----------~~C-~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~  152 (303)
                      .+.           ... .+.+++.........+.+.++++||..|-..--.|.+.
T Consensus       106 ~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~  161 (365)
T PF03125_consen  106 DDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK  161 (365)
T ss_pred             cCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            111           111 12234555555666899999999999999998888764

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.87  E-value=0.81  Score=37.56  Aligned_cols=48  Identities=10%  Similarity=0.145  Sum_probs=40.2

Q ss_pred             cccccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q psy16862        107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMN  154 (303)
Q Consensus       107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t  154 (303)
                      ...+...++.......+..+.++..-..+++||++|....-+|....+
T Consensus        78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~  125 (236)
T PF02175_consen   78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRT  125 (236)
T ss_pred             EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCce
Confidence            345666788888899999999999999999999999999888876433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.84  E-value=0.96  Score=39.20  Aligned_cols=123  Identities=13%  Similarity=-0.015  Sum_probs=70.2

Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccC
Q psy16862        114 CDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH  193 (303)
Q Consensus       114 C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (303)
                      =++..++...+.+.+...-++.++-|.+.+..|..+.+. ..+-.....-++.+++++.+.|.+....+...-+..+..+
T Consensus       103 Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fG  181 (307)
T PF10322_consen  103 LKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFG  181 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCC
Confidence            345567888889999999999999999999999876544 3344455666666666666655532211111111101000


Q ss_pred             CCce-EEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        194 HPNV-CIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       194 ~~~~-c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                      .... -...+..........+...+-++.+++++...++++|+.+
T Consensus       182 AI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k  226 (307)
T PF10322_consen  182 AIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK  226 (307)
T ss_pred             EEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0000 0111111112222333344556677888888888888876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.28  E-value=0.57  Score=40.12  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhcc-cccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHHHHHHHHHHHHHHH
Q psy16862         55 AILGNLLVIISVIKH-RKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLC  133 (303)
Q Consensus        55 gl~~N~~vl~~i~~~-~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~  133 (303)
                      +++|.++.+.-+.-+ |....++-.++..+.++++...+-.    ++..-.. ...-+..|.+..-+.......-....+
T Consensus         4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INa----iIW~~n~-~~~~~~wCDI~~kl~~~~~~g~~~a~l   78 (283)
T PF02076_consen    4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINA----IIWRDND-INWWPVWCDISTKLIIGSSVGIPAASL   78 (283)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhh----hhcCCCC-CccCceeeeehHHHHHHHHHHHHHHHH
Confidence            344444444333322 2223577888899999998876532    1211111 111227999988887777777666666


Q ss_pred             HHHHHHHHHHhcCCCCC--cccchhhhHHHHHHHHhhhhhhhhccc
Q psy16862        134 CISVDRYYAIVKPLQYP--IIMNQNTVLLMLSNVWILPGIISFTPI  177 (303)
Q Consensus       134 ~iaidRy~aI~~P~~~~--~~~t~~~~~~~i~~~w~~~~~~~~~~~  177 (303)
                      +|+-.-| .|..+-...  ..-.+|+..+=+.+++.+.++.....+
T Consensus        79 cI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~y  123 (283)
T PF02076_consen   79 CIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHY  123 (283)
T ss_pred             HHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665544 344433211  111256666666667777766655443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli

Probab=91.77  E-value=1.2  Score=30.66  Aligned_cols=25  Identities=8%  Similarity=0.044  Sum_probs=12.6

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHH
Q psy16862        212 SISFWIPGFVMKKKKKRKKKKKKKK  236 (303)
Q Consensus       212 ~~~~~ip~~i~~~~y~~I~~~l~~~  236 (303)
                      .+.++..++|+++.-.+|+..-+.-
T Consensus        20 A~L~i~~FiILLIi~~~IW~~~r~~   44 (121)
T PF10669_consen   20 AFLFIVVFIILLIITKSIWHDSRQV   44 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3334444555555566666544433

The function is currently unknown.

>PF15086 UPF0542: Uncharacterised protein family UPF0542

Probab=91.74  E-value=1.2  Score=28.93  Aligned_cols=20  Identities=15%  Similarity=0.458  Sum_probs=13.2

Q ss_pred             hHHHHHhhhhhhhhhhHHHH
Q psy16862        205 YYALISSSISFWIPGFVMKK  224 (303)
Q Consensus       205 ~~~~~~~~~~~~ip~~i~~~  224 (303)
                      .|.++..++..+.|++++..
T Consensus        19 P~~Fl~~vll~LtPlfiisa   38 (74)
T PF15086_consen   19 PYEFLTTVLLILTPLFIISA   38 (74)
T ss_pred             hHHHHHHHHHHHhHHHHHHH
Confidence            46666667777788766544

>KOG2302|consensus

Probab=89.26  E-value=16  Score=36.59  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=16.6

Q ss_pred             ccchhHHHHHHHHHhHHHHhh
Q psy16862         73 RIITNYFVVSLAFADLLVALC   93 (303)
Q Consensus        73 ~~~~~~ll~~Lai~Dl~~~l~   93 (303)
                      .+..+.+++..++.|++....
T Consensus      1194 WN~LDgflv~vsviDilvs~a 1214 (1956)
T KOG2302|consen 1194 WNVLDGFLVAVSVIDILVSQA 1214 (1956)
T ss_pred             HHhhhHHHHHHHHHHHHHHHh
Confidence            466788999999999987543

>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli

Probab=87.94  E-value=2.3  Score=29.36  Aligned_cols=8  Identities=0%  Similarity=-0.001  Sum_probs=3.2

Q ss_pred             HHHHHHHH
Q psy16862        232 KKKKKKKK  239 (303)
Q Consensus       232 ~l~~~~~~  239 (303)
                      .++-.++.
T Consensus        36 ~IW~~~r~   43 (121)
T PF10669_consen   36 SIWHDSRQ   43 (121)
T ss_pred             HHhhhHHH
Confidence            34444433

The function is currently unknown.

>KOG4349|consensus

Probab=87.75  E-value=8.1  Score=28.07  Aligned_cols=85  Identities=7%  Similarity=0.098  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-chhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRI-ITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS  119 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~-~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~  119 (303)
                      +-++........++-+.+-++.++.+.++|.-|- +.-+++. --+.-+..++..-..............+.+.|.+.+.
T Consensus        47 y~vFLWal~Ss~fih~~A~ilalFTLRkHkygrF~si~iliM-gfi~P~~~Gi~tS~viA~~~~As~~~ms~~y~~i~G~  125 (143)
T KOG4349|consen   47 YSVFLWALLSSMFIHLGATILALFTLRKHKYGRFISIPILIM-GFIIPFVFGIPTSMVLALAMYASKNAVSTWYCAIMGI  125 (143)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhhcCccceeeehHHHHH-HHHHHHHhcchHHHHHHHHHHHccCCccHHHHHHHHH
Confidence            3444444445556677778888888877666553 2222222 2223333333222122222223345667778888776


Q ss_pred             HHHHHHH
Q psy16862        120 FDVYFST  126 (303)
Q Consensus       120 ~~~~~~~  126 (303)
                      .+.++..
T Consensus       126 ~QT~~i~  132 (143)
T KOG4349|consen  126 IQTLLIF  132 (143)
T ss_pred             HHHHHHH
Confidence            6655443

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=81.02  E-value=3.6  Score=37.33  Aligned_cols=29  Identities=21%  Similarity=0.380  Sum_probs=12.8

Q ss_pred             hhhhhhHHHHHHHHHhHhhhhhccccccc
Q psy16862        271 KKKKKTTKKKKRKKKRKKKKNQHHRDVWQ  299 (303)
Q Consensus       271 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (303)
                      .++.....+|+++|..+++||+..||+.+
T Consensus       335 ~~~~~~~~~k~~~k~~~~~~~~~~~~~~~  363 (429)
T PRK00247        335 TRTAEKNEAKARKKEIAQKRRAAEREINR  363 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-36
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		1e-35
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		2e-35
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-35
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-35
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		8e-35
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		9e-35
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		9e-35
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		9e-35
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		1e-34
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		1e-34
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		4e-26
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		2e-18
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		1e-17
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		1e-16
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		5e-15
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		3e-14
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		4e-14
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		5e-14
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		7e-14
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		9e-14
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		9e-13
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		1e-12
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		3e-12
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		1e-11
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-08
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-08
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		1e-07
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		1e-07
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		1e-07
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		6e-07
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		6e-07
2x72_A	349	Crystal Structure Of The Constitutively Active E113		7e-07
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		7e-07
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		8e-07
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		8e-07

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score =  147 bits (371), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   LT
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 364

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   LT
Sbjct: 9   GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 68
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 69  KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 128
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 129 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 187

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 13  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM 72
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 73  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 132
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 133 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 191

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score =  144 bits (363), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
            +LM  +++  + GN+LVI ++   ++L+ +TN F+ SLA ADL+V L V+PF A + + 
Sbjct: 15  SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W +G F+C++W S DV   TASI  LC I++DRY AI  P +Y  +M +    +++  
Sbjct: 75  GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVM 222
           VW +  ++SF PIM+ W+   D +  + +  P  C FV N  YA+ SS ISF+IP  +M
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
            +LM  +++  + GN+LVI ++   ++L+ +TN F+ SLA ADL+V L V+PF A + + 
Sbjct: 15  SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W +G F+C++W S DV   TASI  LC I++DRY AI  P +Y  +M +    +++  
Sbjct: 75  GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHH-PNVCIFVVNVYYALISSSISFWIPGFVM 222
           VW +  ++SF PIM+ W+   D +  + +  P  C FV N  YA+ SS ISF+IP  +M
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 44  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 164 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 222

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 45  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 223

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 14  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 73
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 74  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 133
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY    H++    + N   C F  N  YA+ SS +SF++P  +M
Sbjct: 134 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIM 192

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score =  143 bits (361), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 38  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 97
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 98  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 157
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 158 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 216

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 37  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 96
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 97  KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 156
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPN--VCIFVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY    H++    + N   C F  N  YA+ SS +SF++P  +M
Sbjct: 157 VWIVSGLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIM 215

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Query: 45  GMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT 104
           G++M  I++  + GN+LVI ++ K  +L+ +TNYF+ SLA ADL++ L V+PF A   L 
Sbjct: 45  GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 105 DEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSN 164
             W FG F C+ W S DV   TASI  LC I+VDRY+AI  P +Y  ++ +N   +++  
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-FVVNVYYALISSSISFWIPGFVM 222
           VWI+ G+ SF PI + WY     +    +    C  F  N  YA+ SS +SF++P  +M
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 223

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 14/174 (8%)
Query: 49  CFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE-W 107
           C +I+  + GN LV ++V+K R L+  TNY VVSLA ADLLVA  VMP+   + +T   W
Sbjct: 46  CALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW 105
Query: 108 YFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNT---VLLMLSN 164
            F    CDV+ + DV   TASI +LC IS+DRY A+V P+ Y     Q++   V LM++ 
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITA 165
Query: 165 VWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFWIP 218
           VW+L   +S  P++ G+ TT D        P VC  + N  + + SS +SF++P
Sbjct: 166 VWVLAFAVS-CPLLFGFNTTGD--------PTVC-SISNPDFVIYSSVVSFYLP 209

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 53  ITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYF 112
           +  I+GN+LV++S+  +R L+ + NYF+ SLA ADL++ +  M    + ++   W  G  
Sbjct: 35  LVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 113 MCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWIL---- 168
           +CD+W + D   S AS+++L  IS DRY+ + KPL YP+        +M++  W+L    
Sbjct: 95  VCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFIL 154
Query: 169 --PGIISFTPIMLGWYTTPDHKQYRKHHPNVCI 199
             P I+ F   ++G  T  D + Y +   N  +
Sbjct: 155 WAPAIL-FWQFIVGVRTVEDGECYIQFFSNAAV 186

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 47  LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE 106
           L  F+ +  I+GN+LVI++   +++L+ + NYF++SLA ADL++ +  M       + + 
Sbjct: 18  LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR 77
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVW 166
           W  G   CD+W S D   S AS+++L  IS DRY++I +PL Y          +M+   W
Sbjct: 78  WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 167 ILPGIISFTPIMLGW 181
           ++  ++ + P +L W
Sbjct: 138 VISFVL-WAPAILFW 151

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 5/186 (2%)
Query: 37  HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMP 96
            + P ++    +C + +     NLLV+ +V   RKL  + N ++VSL+ ADL+V   VMP
Sbjct: 7   QLMPLVVVLSTICLVTVGL---NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
Query: 97  FNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQN 156
            N +  L  +W  G  +C  W S D   STASI  +  + +DRY ++ +PL+Y     + 
Sbjct: 64  MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKT 123
Query: 157 TVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIFVVNVYYALISSSISFW 216
                +   W L   +   PI LGW         R+       F    ++ ++++ I+F+
Sbjct: 124 RASATILGAWFL-SFLWVIPI-LGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFY 181
Query: 217 IPGFVM 222
           +P  +M
Sbjct: 182 LPTLLM 187

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+LV +  +PF   ++++  +   
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA--ITISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 74  CHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKNH 155

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+ V +  +PF   ++++  +   
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA--ITISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 74  CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ ++H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKQH 155

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVS A AD+LV +  +PF   ++++  +   
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA--IAISTGFCAA 73
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 74  CHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 134 AIGLTP-MLGWNNCGQPKEGKAH 155

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 20/142 (14%)
Query: 66  VIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT----DEWYFGYFMCDVWNSFD 121
           ++ H+++R +TNYF+V+LAFA+  +A     FN +V+ T    +EWY+G F C   N F 
Sbjct: 57  ILAHKRMRTVTNYFLVNLAFAEASMA----AFNTVVNFTYAVHNEWYYGLFYCKFHNFFP 112
Query: 122 VYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
           +    ASI  +  ++ DRY AI+ PLQ  +      V++ +  +W+L  +++F     G+
Sbjct: 113 IAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICV--IWVLALLLAFPQ---GY 167
Query: 182 YTTPDHKQYR-------KHHPN 196
           Y+T +    R         HPN
Sbjct: 168 YSTTETMPSRVVCMIEWPEHPN 189

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+ V +  +PF   ++++  +   
Sbjct: 31  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAA 88
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 89  CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 148
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 149 AIGLTP-MLGWNNCGQPKEGKNH 170

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I + AILGN+LV  +V  +  L+ +TNYFVVSLA AD+ V +  +PF   ++++  +   
Sbjct: 41  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAA 98
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
              C     F +  + +SI  L  I++DRY AI  PL+Y  ++       +++  W+L  
Sbjct: 99  CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 158
Query: 171 IISFTPIMLGWYTTPDHKQYRKH 193
            I  TP MLGW      K+ + H
Sbjct: 159 AIGLTP-MLGWNNCGQPKEGKNH 180

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 37  HIFPFI--IKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV 94
           HI P I  I   +   + +  ++GN LV+  +I++ K++  TN ++ +LA AD LV    
Sbjct: 16  HISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TT 74
Query: 95  MPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMN 154
           MPF + V L + W FG  +C +  S D Y    SI  L  +SVDRY A+  P++      
Sbjct: 75  MPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT 134
Query: 155 QNTVLLMLSNVWILPGIISFTPIMLG 180
                ++   +W+L   +  + I+LG
Sbjct: 135 PLKAKIINICIWLLSSSVGISAIVLG 160

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 55  AILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMC 114
            +LGN+LV+  ++++ KL+  TN ++ +LA AD L A   +PF +   L + W FG  +C
Sbjct: 28  GLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLC 86
Query: 115 DVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISF 174
               S D Y    SI  L  +SVDRY A+  P++           L+   +W+L   +  
Sbjct: 87  KAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVG- 145
Query: 175 TPIMLGWYTTP 185
            PIM+   T P
Sbjct: 146 VPIMVMAVTQP 156

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 47  LMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDE 106
           L   + +  + GN LV+  ++++ K++  TN ++ +LA AD L A   +PF ++  L   
Sbjct: 23  LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGT 81
Query: 107 WYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQY-PIIMNQNTVLLMLSNV 165
           W FG  +C +  S D Y    SI  LC +SVDRY A+  P++       +N  ++ + N 
Sbjct: 82  WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN- 140
Query: 166 WILPGIISFTPIMLGWYTTPDHKQ 189
           WIL   I   P+M  +  T  ++Q
Sbjct: 141 WILSSAIGL-PVM--FMATTKYRQ 161

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           + +  +LGN LV+  +++H K++  TN ++ +LA AD LV L  +PF     L   W FG
Sbjct: 135 VCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFG 193
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPG 170
             +C    + D Y    S   L  +SVDRY AI  P++   +   +    +   +W L  
Sbjct: 194 NALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALAS 253
Query: 171 IISFTPIMLGWYTTPDHK 188
           ++     ++G     D +
Sbjct: 254 VVGVPVAIMGSAQVEDEE 271

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 68  KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
           K + L+   N F+++LAF+D   +L    P   I     +W FG+  C V+      F  
Sbjct: 60  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 119
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
            SI+ +  IS+DRY  I +P+     M+     +M+  VW+   + +  PI  GW
Sbjct: 120 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI-FGW 173

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 68  KHRKLRIITNYFVVSLAFADLLVALC-VMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFST 126
           K + L+   N F+++LAF+D   +L    P   I     +W FG+  C V+      F  
Sbjct: 61  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120
Query: 127 ASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGW 181
            SI+ +  IS+DRY  I +P+     M+     +M+  VW+   + +  PI  GW
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI-FGW 174

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I +T I+GN LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A+ ++ + WYFG
Sbjct: 58  IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
            F+C   +        +S+  L  IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I +T I+GN LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A+ ++ + WYFG
Sbjct: 58  IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
            F+C   +        +S+  L  IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 51  IIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFG 110
           I +T I+GN LVI+ +   +KLR +T+ + + L+ ADLL  +  +PF A+ ++ + WYFG
Sbjct: 58  IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVAN-WYFG 115
Query: 111 YFMCDVWNSFDVYFSTASILHLCCISVDRYYAIV 144
            F+C   +        +S+  L  IS+DRY AIV
Sbjct: 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 39  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 99  LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 157
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 158 AFTWVM-ALACAAPPLVGW 175

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 40  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 158
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 159 AFTWVM-ALACAAPPLVGW 176

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 46  MLMCFIIITAILG---NLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVS 102
           ML  ++ +  +LG   N L +   ++H+KLR   NY +++LA ADL +           S
Sbjct: 39  MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 98
Query: 103 LTDEWYFGYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLML 162
           L   + FG   C++   F       ++  L  ++++RY  + KP+       +N  ++ +
Sbjct: 99  LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGV 157
Query: 163 SNVWILPGIISFTPIMLGW 181
           +  W++  +    P ++GW
Sbjct: 158 AFTWVM-ALACAAPPLVGW 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.98
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.98
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.97
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.97
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.97
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.97
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.97
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.97
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.97
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.97
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.97
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.97
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.97
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.97
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.97
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.96
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.95
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.53
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	95.72
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	87.33
2rdd_B	37	UPF0092 membrane protein YAJC; drug resistance, mu	81.34

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-34  Score=267.38  Aligned_cols=205  Identities=18%  Similarity=0.308  Sum_probs=165.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cchhHHHHHHHHHhHHHHhhhhhHHHHHHhc--ccccc
Q psy16862         35 HIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLR---IITNYFVVSLAFADLLVALCVMPFNAIVSLT--DEWYF  109 (303)
Q Consensus        35 ~~~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~---~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~--~~~~~  109 (303)
                      .......++..+++++++++|++||+++++++.+++++|   +++|+|++|||++|++.+++.+|+.+.....  +.|.+
T Consensus        26 ~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~  105 (510)
T 4grv_A           26 NTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF  105 (510)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSS
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEh
Confidence            344556788889999999999999999999999876544   7889999999999999999999988876654  56999


Q ss_pred             ccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcc
Q psy16862        110 GYFMCDVWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQ  189 (303)
Q Consensus       110 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~  189 (303)
                      |+.+|++..++..++..+|++++++||+|||+||++|++|+...+++++..+++++|++++++++|+++.... ......
T Consensus       106 g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~-~~~~~~  184 (510)
T 4grv_A          106 GDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGL-QNRSAD  184 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEE-EECSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcc-cccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988543221 111111


Q ss_pred             cccCCCceEEEE----ehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy16862        190 YRKHHPNVCIFV----VNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKR  240 (303)
Q Consensus       190 ~~~~~~~~c~~~----~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~  240 (303)
                      ........|...    ....|..+..++.+++|+++|+++|.+|++.++++.+..
T Consensus       185 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~  239 (510)
T 4grv_A          185 GTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIF  239 (510)
T ss_dssp             SCCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHH
T ss_pred             CCCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            111222345432    234566677778899999999999999999998765543

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.98  E-value=3.5e-32  Score=250.42  Aligned_cols=201  Identities=37%  Similarity=0.696  Sum_probs=171.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhch
Q psy16862         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN  118 (303)
Q Consensus        39 ~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~  118 (303)
                      ...++..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|+.+...+.+.|.+|...|++..
T Consensus        38 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~  117 (500)
T 2rh1_A           38 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT  117 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHH
Confidence            33677788999999999999999999999999999999999999999999999999999888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCC-CcccccCCCce
Q psy16862        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD-HKQYRKHHPNV  197 (303)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  197 (303)
                      ++..++..+|++++++||+|||+||++|++|+...+++++..+++++|+++++++++|.++++..... ....|......
T Consensus       118 ~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c~~~~~~  197 (500)
T 2rh1_A          118 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETC  197 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecccccCcceecccccc
Confidence            99999999999999999999999999999999999999999999999999999987675555533222 11223222222


Q ss_pred             EEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16862        198 CIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKK  239 (303)
Q Consensus       198 c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~  239 (303)
                      |.......|.++..++.+++|+++++++|.+|++.++++.++
T Consensus       198 ~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~  239 (500)
T 2rh1_A          198 CDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI  239 (500)
T ss_dssp             CCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233445677788888889999999999999999999998766

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.98  E-value=3.1e-31  Score=241.45  Aligned_cols=198  Identities=24%  Similarity=0.451  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchH
Q psy16862         40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS  119 (303)
Q Consensus        40 ~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~  119 (303)
                      ..++..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|..+.....+.|.++...|++..+
T Consensus        22 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  101 (467)
T 3uon_A           22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLA  101 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHH
Confidence            36778899999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccc---cCCCcccccCCCc
Q psy16862        120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYT---TPDHKQYRKHHPN  196 (303)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  196 (303)
                      +..++..+|++++++||+|||+||++|++|+...+.+++..+++++|++++++++|+++.....   .......|.... 
T Consensus       102 ~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~-  180 (467)
T 3uon_A          102 LDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQF-  180 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCCCCGG-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcceeec-
Confidence            9999999999999999999999999999999999999999999999999999998885432211   111222232221 


Q ss_pred             eEEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        197 VCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       197 ~c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                          .....|.++..++.+++|+++++++|+.|++.++++.++.+.
T Consensus       181 ----~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~  222 (467)
T 3uon_A          181 ----FSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEM  222 (467)
T ss_dssp             ----GGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             ----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                134567777888889999999999999999999998765544

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.97  E-value=7.1e-32  Score=247.99  Aligned_cols=197  Identities=24%  Similarity=0.366  Sum_probs=167.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchh
Q psy16862         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (303)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~  116 (303)
                      .....++..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+ +.+|..+..... .|.++...|++
T Consensus        44 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C~~  121 (502)
T 3odu_A           44 ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLCKA  121 (502)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhhhh
Confidence            3455788899999999999999999999999999999999999999999999995 578887776655 68999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCc
Q psy16862        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (303)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (303)
                      ..++..++..+|++++++||+|||+||++|++|+...+.+++..+++++|++++++++|+++.........       ..
T Consensus       122 ~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~-------~~  194 (502)
T 3odu_A          122 VHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD-------RY  194 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECSS-------SE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccCC-------ce
Confidence            99999999999999999999999999999999999999999999999999999999999866544333222       23


Q ss_pred             eEEEE-----ehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        197 VCIFV-----VNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       197 ~c~~~-----~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                      .|...     ....|.+...++.+++|+++++++|+.|++.++++.++.+.
T Consensus       195 ~C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~  245 (502)
T 3odu_A          195 ICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFE  245 (502)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHH
T ss_pred             EEeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence            34322     23446666778889999999999999999999997665443

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.97  E-value=9.4e-32  Score=244.58  Aligned_cols=203  Identities=21%  Similarity=0.334  Sum_probs=170.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhch
Q psy16862         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN  118 (303)
Q Consensus        39 ~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~  118 (303)
                      ...++..+++.+++++|++||+++++++.++++++++.++|++|||++|++.++. +|..+.....+.|.++...|++..
T Consensus        15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~   93 (464)
T 4dkl_A           15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVI   93 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHH
Confidence            4478888999999999999999999999999999999999999999999999875 888888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceE
Q psy16862        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVC  198 (303)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  198 (303)
                      ++..++..+|++++++||+|||+||++|++|+...+.+++..+++++|++++++++|+++........+...|.......
T Consensus        94 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~c~~~~~~~  173 (464)
T 4dkl_A           94 SIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHP  173 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETTEEECCBCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccCCCceEEeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999887654433333333332222111


Q ss_pred             EEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        199 IFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                      .......|.++..++.+++|+++++++|..|++.++++++..+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~  217 (464)
T 4dkl_A          174 TWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEM  217 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            11123456777778889999999999999999999887664443

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.97  E-value=1.1e-30  Score=238.88  Aligned_cols=200  Identities=28%  Similarity=0.396  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~  120 (303)
                      ..+..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|..+....  .|..+...|++..++
T Consensus        21 ~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~C~~~~~~   98 (488)
T 3eml_A           21 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACF   98 (488)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHH
Confidence            567788899999999999999999999999999999999999999999999989998776443  577888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccC------CCcccccCC
Q psy16862        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTP------DHKQYRKHH  194 (303)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  194 (303)
                      ..++..+|++++++||+|||++|++|++|+...+++++..+++++|++++++++|+++ ++....      .....|...
T Consensus        99 ~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  177 (488)
T 3eml_A           99 VLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEG  177 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGG-TCCSSCC-------CCSSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHh-ccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999988854 332211      122344444


Q ss_pred             CceEEE---EehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy16862        195 PNVCIF---VVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKK  243 (303)
Q Consensus       195 ~~~c~~---~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~  243 (303)
                      ...|..   .....+.++..++.+++|+++++++|..|++.++++.++.+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~  229 (488)
T 3eml_A          178 QVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEML  229 (488)
T ss_dssp             CEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             cceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence            444421   2224455556778899999999999999999999887665543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.97  E-value=2.2e-30  Score=234.60  Aligned_cols=203  Identities=28%  Similarity=0.404  Sum_probs=166.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchh
Q psy16862         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (303)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~  116 (303)
                      ......+..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|..+....  .|..+...|++
T Consensus        27 ~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~--~~~~~~~~C~~  104 (447)
T 4eiy_A           27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLF  104 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCEEEHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccCccHHHH
Confidence            3445678888999999999999999999999999999999999999999999999989998776443  56778899999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCC------Cccc
Q psy16862        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD------HKQY  190 (303)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~------~~~~  190 (303)
                      ..++..++..+|++++++||+|||++|++|++|+...+.+++..+++++|++++++++|+++ ++.....      ....
T Consensus       105 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~-~~~~~~~~~~~~~~~~~  183 (447)
T 4eiy_A          105 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQG  183 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGG-TCSSTTSCCHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhh-eeccccccCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999998854 3322211      1123


Q ss_pred             ccCCCceEEE---EehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        191 RKHHPNVCIF---VVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       191 ~~~~~~~c~~---~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                      |......|..   .....+.++..++.+++|+++++++|..|++.++++.++...
T Consensus       184 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~  238 (447)
T 4eiy_A          184 CGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLED  238 (447)
T ss_dssp             CCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4443334422   122344445566778999999999999999999998776554

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=237.37  Aligned_cols=203  Identities=17%  Similarity=0.182  Sum_probs=158.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhc-cccccccccchh
Q psy16862         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-DEWYFGYFMCDV  116 (303)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~-~~~~~~~~~C~~  116 (303)
                      ....++..+++++++++|++||+++++++.+++++++++++|++|||++|++.++. +|..+..... +.|.++...|++
T Consensus        17 ~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~~~~~~C~~   95 (484)
T 3vw7_A           17 SWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFGSELCRF   95 (484)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCCSCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhHHhH
Confidence            34477888999999999999999999999999999999999999999999999764 5555554444 589999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhcccccccccc--CCCcccccCC
Q psy16862        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTT--PDHKQYRKHH  194 (303)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  194 (303)
                      ..++..++..+|++++++||+|||+||++|++|+...+.+++..+++++|++++++++|+++......  ......|...
T Consensus        96 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~C~~~  175 (484)
T 3vw7_A           96 VTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGITTCHDV  175 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTTEEEESSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCceeecc
Confidence            99999999999999999999999999999999999999999999999999999999988855433211  1111222221


Q ss_pred             CceE-EEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy16862        195 PNVC-IFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRK  241 (303)
Q Consensus       195 ~~~c-~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~  241 (303)
                      ...- .......|.++..++.+++|+++++++|+.|++.++++.++.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~  223 (484)
T 3vw7_A          176 LSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFE  223 (484)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             CCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence            1100 0111223666667888999999999999999999998875443

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.97  E-value=2.2e-31  Score=245.86  Aligned_cols=206  Identities=37%  Similarity=0.706  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchH
Q psy16862         40 PFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNS  119 (303)
Q Consensus        40 ~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~  119 (303)
                      ..++..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|..+.....+.|.++...|++..+
T Consensus       181 ~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  260 (514)
T 3sn6_R          181 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTS  260 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHH
Confidence            46678889999999999999999999999999999999999999999999999999998888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCc-ccccCCCceE
Q psy16862        120 FDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHK-QYRKHHPNVC  198 (303)
Q Consensus       120 ~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c  198 (303)
                      +..++..+|++++++||+|||++|++|++|+...+++++..+++++|+++++++++|.++++....... ..|......+
T Consensus       261 l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~~~~~~  340 (514)
T 3sn6_R          261 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCC  340 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceeeccccc
Confidence            999999999999999999999999999999998999999999999999999999888766654333322 2232222223


Q ss_pred             EEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy16862        199 IFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKN  245 (303)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~~~  245 (303)
                      .......|.+...++.+++|+++++++|.+|++.++++.++.+....
T Consensus       341 ~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~  387 (514)
T 3sn6_R          341 DFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEG  387 (514)
T ss_dssp             CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            34455678888888999999999999999999999998877765544

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.97  E-value=6.2e-30  Score=225.76  Aligned_cols=194  Identities=23%  Similarity=0.417  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~  120 (303)
                      ..+..+++.+++++|++||+++++++.+++++|++.+++++|||++|++.+++.+|..+.....+.|..++..|++..++
T Consensus        32 ~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~  111 (364)
T 2ks9_A           32 IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFF  111 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHH
Confidence            45567888999999999999999999999999999999999999999999988899888877778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEE-
Q psy16862        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-  199 (303)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-  199 (303)
                      ..++..+|++++++||+|||+||++|++|+  .+.+++..+++++|+++++.++|+.+........+...|........ 
T Consensus       112 ~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~  189 (364)
T 2ks9_A          112 PIAAVFASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPN  189 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCCBCTTCSSBCCCCSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhheecCCCCEEeecCCCcch
Confidence            999999999999999999999999999976  57888889999999999999988765444333333333332221110 


Q ss_pred             EEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy16862        200 FVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKK  236 (303)
Q Consensus       200 ~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~  236 (303)
                      ......|.....++.+++|+++++++|..|++.++++
T Consensus       190 ~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~  226 (364)
T 2ks9_A          190 KIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWAS  226 (364)
T ss_dssp             TTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0122456677778889999999999999999888653

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.97  E-value=5.2e-31  Score=227.55  Aligned_cols=203  Identities=36%  Similarity=0.677  Sum_probs=172.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhch
Q psy16862         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWN  118 (303)
Q Consensus        39 ~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~  118 (303)
                      .......+++.+++++|++||+++++++.++++++++.+++++|||++|++.++..+|..+.....+.|..++..|++..
T Consensus         9 ~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~   88 (315)
T 4amj_A            9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWT   88 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999889999888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCC-CcccccCCCce
Q psy16862        119 SFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPD-HKQYRKHHPNV  197 (303)
Q Consensus       119 ~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  197 (303)
                      ++..++..+|++++++||+|||+||++|++|+...+++++..+++++|+++++.+.+|.+..+....+ +...|......
T Consensus        89 ~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  168 (315)
T 4amj_A           89 SLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGC  168 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCcccccccccc
Confidence            99999999999999999999999999999999889999999999999999999998886654432222 22233334444


Q ss_pred             EEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy16862        198 CIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRK  241 (303)
Q Consensus       198 c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~  241 (303)
                      |+......|.....++.+++|+++++++|..|++.++++.++.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~  212 (315)
T 4amj_A          169 CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKID  212 (315)
T ss_dssp             CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             chhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            44456677888888899999999999999999999987765443

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.97  E-value=2.7e-29  Score=232.22  Aligned_cols=188  Identities=18%  Similarity=0.252  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~  120 (303)
                      ..+..+++.+++++|++||+++++++.+++++|+++++|++|||++|++.++..+|..+.. ....|..+...|.+..++
T Consensus        63 ~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~  141 (520)
T 3v2y_A           63 IKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGS  141 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHH
Confidence            4788899999999999999999999999999999999999999999999999888876665 556788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEEE
Q psy16862        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCIF  200 (303)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  200 (303)
                      ..++..+|++++++||+|||+||+ |++|+...+++++..+++++|++++++++||+ +++... .+...|.....    
T Consensus       142 ~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~-~~~~~~-~~~~~C~~~~~----  214 (520)
T 3v2y_A          142 MFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPI-MGWNCI-SALSSCSTVLP----  214 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTT-TTCBCT-TCGGGBCSSST----
T ss_pred             HHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHH-Heeccc-cCCCcccccCC----
Confidence            999999999999999999999999 99999999999999999999999999999884 445333 22222322211    


Q ss_pred             EehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        201 VVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       201 ~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                      .....|.+ ..++.+++|+++++++|.+|++.+++++
T Consensus       215 ~~~~~~~~-~~~~~~~lPl~ii~~~Y~~I~~~l~~~~  250 (520)
T 3v2y_A          215 LYHKHYIL-FCTTVFTLLLLSIVILYCRIYSLVRTRN  250 (520)
T ss_dssp             TBBHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            12233443 3455699999999999999999999987

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=237.26  Aligned_cols=192  Identities=38%  Similarity=0.610  Sum_probs=160.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhc-cccccccccchhc
Q psy16862         39 FPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLT-DEWYFGYFMCDVW  117 (303)
Q Consensus        39 ~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~-~~~~~~~~~C~~~  117 (303)
                      ....+..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|..+...+. +.|.++...|++.
T Consensus        36 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           36 RPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF  115 (481)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhH
Confidence            446677788999999999999999999999999999999999999999999999899988876666 5789999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCC
Q psy16862        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQY---PIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHH  194 (303)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~---~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (303)
                      .++..++..+|++++++||+|||+||++|++|   ....+.+++..+++++|++++++++|+++ ++... ....     
T Consensus       116 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~-~~~~~-~~~~-----  188 (481)
T 3pbl_A          116 VTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF-GFNTT-GDPT-----  188 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT-TTCCC-SSTT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-eeccc-CCCC-----
Confidence            99999999999999999999999999999998   56778899999999999999999988854 33221 2222     


Q ss_pred             CceEEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy16862        195 PNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKR  240 (303)
Q Consensus       195 ~~~c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~  240 (303)
                        .|... ...|..+..++.+++|+++++++|+.|++.++++.+++
T Consensus       189 --~C~~~-~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~  231 (481)
T 3pbl_A          189 --VCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKN  231 (481)
T ss_dssp             --CCSCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             --ccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence              23222 23467777788899999999999999999999876543

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=235.73  Aligned_cols=198  Identities=24%  Similarity=0.424  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhchHH
Q psy16862         41 FIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSF  120 (303)
Q Consensus        41 ~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~  120 (303)
                      .++..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|..+.....+.|.++...|++..++
T Consensus         8 ~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~   87 (452)
T 3rze_A            8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSM   87 (452)
T ss_dssp             -CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCceEE-
Q psy16862        121 DVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPNVCI-  199 (303)
Q Consensus       121 ~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-  199 (303)
                      ..++..+|++++++||+|||++|++|++|+...+.+++..+++++|++++++++|.+....+.....    ......|. 
T Consensus        88 ~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~----~~~~~~C~~  163 (452)
T 3rze_A           88 DYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTS----VRREDKCET  163 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-----------CCSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cCCCCeecC
Confidence            9999999999999999999999999999999999999999999999999999887543322221110    01112231 


Q ss_pred             -EEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16862        200 -FVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKK  242 (303)
Q Consensus       200 -~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~  242 (303)
                       ......|.++..++.+++|+++++++|+.|++.++++.+++..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~  207 (452)
T 3rze_A          164 DFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEM  207 (452)
T ss_dssp             SCTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence             2234557777788889999999999999999999887655443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.97  E-value=1.7e-29  Score=229.21  Aligned_cols=201  Identities=23%  Similarity=0.369  Sum_probs=168.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhh-hhHHHHHHhccccccccccchh
Q psy16862         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCV-MPFNAIVSLTDEWYFGYFMCDV  116 (303)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~-~~~~~~~~~~~~~~~~~~~C~~  116 (303)
                      .....+..+++.+++++|++||+++++++.+++++|++.+++++|||++|++.+++. +|..+.....+.|.++...|++
T Consensus        31 ~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~  110 (448)
T 2z73_A           31 DAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKV  110 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHH
Confidence            344677888999999999999999999999999999999999999999999998764 8888887778889999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCc
Q psy16862        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (303)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (303)
                      ..++..++..+|++++++||+|||++|++|++|+...+++++..+++++|++++++++++++ ++.....+     ....
T Consensus       111 ~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~-~~~~~~~~-----~~~~  184 (448)
T 2z73_A          111 YGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLE-----GVLC  184 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGG-TSSCEEEC-----TTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHh-ceeeeeec-----CCce
Confidence            99999999999999999999999999999999999999999999999999999999988754 33111111     1122


Q ss_pred             eEEEE------ehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy16862        197 VCIFV------VNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKK  244 (303)
Q Consensus       197 ~c~~~------~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~~~~~~~~  244 (303)
                      .|...      ....|.....++.+++|+++++++|..|++.++++.++.+...
T Consensus       185 ~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~  238 (448)
T 2z73_A          185 NCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA  238 (448)
T ss_dssp             SEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             eEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34322      2245566667778999999999999999999999887766543

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.97  E-value=5.9e-30  Score=224.31  Aligned_cols=194  Identities=20%  Similarity=0.329  Sum_probs=162.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchh
Q psy16862         37 HIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDV  116 (303)
Q Consensus        37 ~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~  116 (303)
                      ......+..+++.+++++|++||+++++++.+++++|++.+++++|||++|++.++..+|..+.....+.|..++..|++
T Consensus        34 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  113 (349)
T 1u19_A           34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL  113 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHH
Confidence            34457788889999999999999999999999999999999999999999999999889988887777889999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccCCCc
Q psy16862        117 WNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKHHPN  196 (303)
Q Consensus       117 ~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (303)
                      ..++..++..+|++++++||+|||+||++|++|+. .+.+++...++++|+++++.++|+++ ++.....+     ....
T Consensus       114 ~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~-~~~~~~~~-----~~~~  186 (349)
T 1u19_A          114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLV-GWSRYIPE-----GMQC  186 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGT-TSSCCEEE-----TTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHHH-heeeeecc-----CCce
Confidence            99999999999999999999999999999999877 68899999999999999999988854 33111111     1112


Q ss_pred             eEEEE--------ehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16862        197 VCIFV--------VNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKK  237 (303)
Q Consensus       197 ~c~~~--------~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~~  237 (303)
                      .|...        ....|.....++.+++|+++++++|.+|++.++++.
T Consensus       187 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~  235 (349)
T 1u19_A          187 SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAA  235 (349)
T ss_dssp             EEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCC
T ss_pred             eecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34321        235566777778899999999999999998886553

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.95  E-value=2.9e-28  Score=209.20  Aligned_cols=195  Identities=25%  Similarity=0.345  Sum_probs=152.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccchhc
Q psy16862         38 IFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVW  117 (303)
Q Consensus        38 ~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~~~  117 (303)
                      .....+..+++.+++++|++||+++++++.+++++|+++|++++|||++|++.++ .+|..+.... ..|..|+..|+..
T Consensus         8 ~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~-~~~~~~~~~c~~~   85 (296)
T 2lnl_A            8 TLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASKV-NGWIFGTFLCKVV   85 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH-SSSCCSSHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhcc-CCCccchhHHHHH
Confidence            3446778888999999999999999999999999999999999999999999876 5676665554 4699999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccccCCCcccccC-CCc
Q psy16862        118 NSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYTTPDHKQYRKH-HPN  196 (303)
Q Consensus       118 ~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  196 (303)
                      .++...+..+|++++++||+|||+||++|++|+... +++...+++++|+++++.++|+.........+....+.. ...
T Consensus        86 ~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~-~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~  164 (296)
T 2lnl_A           86 SLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK-RHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLG  164 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCS
T ss_pred             hhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhh-hhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeecc
Confidence            999999999999999999999999999999987754 456677888899999999988865443222222211111 111


Q ss_pred             eEEEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy16862        197 VCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKK  235 (303)
Q Consensus       197 ~c~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~  235 (303)
                      .........+......+.+++|+.++..+|..+.+.+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~  203 (296)
T 2lnl_A          165 NDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK  203 (296)
T ss_dssp             CCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111223345667777888999999999999988765543

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.53  E-value=2.2e-08  Score=54.79  Aligned_cols=30  Identities=40%  Similarity=0.869  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcccchh
Q psy16862        127 ASILHLCCISVDRYYAIVKPLQYPIIMNQN  156 (303)
Q Consensus       127 ~s~~~l~~iaidRy~aI~~P~~~~~~~t~~  156 (303)
                      +|++++++||+|||+||++|++|....+.+
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            688999999999999999999988776654

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=95.72  E-value=0.00057  Score=42.96  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy16862         43 IKGMLMCFIIITAILGNLLVIISVIKHRK   71 (303)
Q Consensus        43 ~~~~~~~~i~i~gl~~N~~vl~~i~~~~~   71 (303)
                      +..+++.+++++|++||+++++++.+++.
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~   58 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKG   58 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecc
Confidence            66788999999999999999999987664

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=87.33  E-value=2.8  Score=37.26  Aligned_cols=37  Identities=14%  Similarity=-0.081  Sum_probs=20.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy16862         35 HIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRK   71 (303)
Q Consensus        35 ~~~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~   71 (303)
                      ........+...+..+++++|=+.-++++..-.+.+.
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~   81 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRS   81 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            4444444555555556666666666666655544333

>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}

Probab=81.34  E-value=2.2  Score=23.22  Aligned_cols=28  Identities=18%  Similarity=0.013  Sum_probs=17.3

Q ss_pred             hhhhhHH-HHHHHHHHHHHHHHHHHhhhh
Q psy16862        216 WIPGFVM-KKKKKRKKKKKKKKKKKRKKK  243 (303)
Q Consensus       216 ~ip~~i~-~~~y~~I~~~l~~~~~~~~~~  243 (303)
                      ++|++++ ++.|..+++-.+|+++++++.
T Consensus         6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m   34 (37)
T 2rdd_B            6 ILMLVVFGLIFYFMILRPQQKRTKEHKKL   34 (37)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTTG
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3444433 667788877777776666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	5e-22
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	1e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	6e-04

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.3 bits (228), Expect = 5e-22
 Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 3/246 (1%)

Query: 14  NINYTSTNFSNTSLFPTNSTIHIHIFP--FIIKGMLMCFIIITAILGNLLVIISVIKHRK 71
           N     +N +     P  +  +    P  F +    M  +I+     N L +   ++H+K
Sbjct: 8   NFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKK 67

Query: 72  LRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCDVWNSFDVYFSTASILH 131
           LR   NY +++LA ADL +           SL   + FG   C++   F       ++  
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 132 LCCISVDRYYAIVKPLQYPIIMNQNTV-LLMLSNVWILPGIISFTPIMLGWYTTPDHKQY 190
           L  ++++RY  + KP+        + +  +  + V  L            +         
Sbjct: 128 LVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSC 187

Query: 191 RKHHPNVCIFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKKKKKRKKKKNQHHRD 250
              +        N  + +    + F IP  V+     +     K+   ++++       +
Sbjct: 188 GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAE 247

Query: 251 VWINRT 256
             + R 
Sbjct: 248 KEVTRM 253

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 32/69 (46%)

Query: 224 KKKKRKKKKKKKKKKKRKKKKNQHHRDVWINRTSRGEEEEEKKKKKKKKKKKTTKKKKRK 283
           +++    ++ +KK +  ++++     ++  +   + E E E  +K  ++     K  K K
Sbjct: 38  RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97

Query: 284 KKRKKKKNQ 292
             +K + N+
Sbjct: 98  LAQKMESNK 106

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 221 VMKKKKKRKKKKKKKKKKKRKKKKNQHHRDVWI-------NRTSRGEEEEEKKKKK---K 270
           V +      +++    ++ +KK +    R  +            R  E E  +K      
Sbjct: 29  VPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENN 88

Query: 271 KKKKKTTKKKKRKKKRKKKKNQHHRDVWQKK 301
              K   +K  +K +  K+  + H     ++
Sbjct: 89  NFIKMAKEKLAQKMESNKENREAHLAAMLER 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	83.83

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1e-25  Score=195.34  Aligned_cols=200  Identities=18%  Similarity=0.231  Sum_probs=158.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHHhhhhhHHHHHHhccccccccccch
Q psy16862         36 IHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVALCVMPFNAIVSLTDEWYFGYFMCD  115 (303)
Q Consensus        36 ~~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~l~~~~~~~~~~~~~~~~~~~~~C~  115 (303)
                      .+.....+.+.++.+++++|++||+++++++.+++++|++.+++++|||++|++.++..+|..+.....+.|..+...|.
T Consensus        32 ~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~  111 (348)
T d1u19a_          32 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCN  111 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhh
Confidence            33444678888999999999999999999999999999999999999999999999988998888888888889999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhHHHHHHHHhhhhhhhhccccccccc-cCCCcccccCC
Q psy16862        116 VWNSFDVYFSTASILHLCCISVDRYYAIVKPLQYPIIMNQNTVLLMLSNVWILPGIISFTPIMLGWYT-TPDHKQYRKHH  194 (303)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  194 (303)
                      ...++...+..++.++++++++|||++|++|++|... .+++....++++|.+++++..++.+..... .......|...
T Consensus       112 ~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (348)
T d1u19a_         112 LEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID  190 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECC
T ss_pred             hhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCcccccccc
Confidence            9999999999999999999999999999999998765 666777788888888888888775432211 11111111111


Q ss_pred             CceE-EEEehhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy16862        195 PNVC-IFVVNVYYALISSSISFWIPGFVMKKKKKRKKKKKKKK  236 (303)
Q Consensus       195 ~~~c-~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~I~~~l~~~  236 (303)
                      .... .......+.+....+.+++|+++++++|.+|.+.++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~  233 (348)
T d1u19a_         191 YYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA  233 (348)
T ss_dssp             CSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSC
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            1110 11233556667777788999999999999998766543

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.83  E-value=8.2  Score=30.10  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=40.6

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHhHHHH
Q psy16862         32 STIHIHIFPFIIKGMLMCFIIITAILGNLLVIISVIKHRKLRIITNYFVVSLAFADLLVA   91 (303)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~i~i~gl~~N~~vl~~i~~~~~~~~~~~~ll~~Lai~Dl~~~   91 (303)
                      +.++....+.+...++..++.+++++|=+..+.++.---+.+.-..  ..+.-+.++..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~--~~~~~l~nLaia   82 (348)
T d1u19a_          25 EAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT--PLNYILLNLAVA   82 (348)
T ss_dssp             TSCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHH
T ss_pred             CCCccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCC--HhHHHHHHHHHH
Confidence            3446677778889889989999999998888888876655444443  345555555554