Psyllid ID: psy1686
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 448 | 2.2.26 [Sep-21-2011] | |||||||
| Q9V3K3 | 481 | RuvB-like helicase 2 OS=D | yes | N/A | 0.558 | 0.519 | 0.691 | 1e-100 | |
| Q29DI0 | 480 | RuvB-like helicase 2 OS=D | yes | N/A | 0.558 | 0.520 | 0.687 | 1e-100 | |
| Q9DE27 | 462 | RuvB-like 2 OS=Xenopus la | N/A | N/A | 0.569 | 0.551 | 0.662 | 1e-100 | |
| Q9WTM5 | 463 | RuvB-like 2 OS=Mus muscul | yes | N/A | 0.522 | 0.505 | 0.688 | 5e-98 | |
| Q9Y230 | 463 | RuvB-like 2 OS=Homo sapie | yes | N/A | 0.522 | 0.505 | 0.688 | 7e-98 | |
| Q2TBU9 | 463 | RuvB-like 2 OS=Bos taurus | yes | N/A | 0.522 | 0.505 | 0.688 | 8e-98 | |
| Q16TA2 | 465 | RuvB-like helicase 2 OS=A | N/A | N/A | 0.558 | 0.537 | 0.691 | 3e-97 | |
| P83571 | 463 | RuvB-like 2 OS=Danio reri | yes | N/A | 0.531 | 0.514 | 0.677 | 5e-96 | |
| Q4P6N7 | 476 | RuvB-like helicase 2 OS=U | N/A | N/A | 0.533 | 0.502 | 0.646 | 3e-91 | |
| O94692 | 465 | RuvB-like helicase 2 OS=S | yes | N/A | 0.544 | 0.524 | 0.615 | 7e-87 |
| >sp|Q9V3K3|RUVB2_DROME RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/259 (69%), Positives = 213/259 (82%), Gaps = 9/259 (3%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
K KV K+ + R DYD A T+ ++CP+GELQKRK VVHTVTLHEIDVINSR
Sbjct: 193 KASGKVNKLGRSFTRAR--DYDATGAQ-TRFVQCPEGELQKRKEVVHTVTLHEIDVINSR 249
Query: 137 THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196
THGFLALF+GDTGEI EVR+QI+ KV EWREEGKAEI PGVLFIDEVHMLDIECFSFLN
Sbjct: 250 THGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLDIECFSFLN 309
Query: 197 RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256
RALES+M+PVV+ ATNRG+T+IRGT Y SPHGIPIDLLDRM+II T PY ++E++ ILKI
Sbjct: 310 RALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKI 369
Query: 257 R------LMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310
R +M D L +LT+IA DTSLRYAIQLITTA++VCRRRKATE+ ED++KVY+LF
Sbjct: 370 RCEEEDCIMHPDALTILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTEDVKKVYSLF 429
Query: 311 LDEGRSTQYLREHQNEYMF 329
LDE RS++ L+E+Q++YMF
Sbjct: 430 LDENRSSKILKEYQDDYMF 448
|
Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q29DI0|RUVB2_DROPS RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/259 (68%), Positives = 213/259 (82%), Gaps = 9/259 (3%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
K KV K+ + R DYD A T+ ++CP+GELQKRK VVHTVTLHEIDVINSR
Sbjct: 193 KASGKVNKLGRSFTRAR--DYDATGAQ-TRFVQCPEGELQKRKEVVHTVTLHEIDVINSR 249
Query: 137 THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196
THGFLALF+GDTGEI EVR+QI+ KV EWREEGKAEI PGVLFIDEVHMLDIECFS+LN
Sbjct: 250 THGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLDIECFSYLN 309
Query: 197 RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256
RALES+M+PVV+ ATNRG+T+IRGT Y SPHGIPIDLLDRM+II T PY ++E++ ILKI
Sbjct: 310 RALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKI 369
Query: 257 R------LMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310
R +M D L +LT+IA DTSLRYAIQLITTA++VCRRRKATE+ ED++KVY+LF
Sbjct: 370 RCEEEDCVMHPDALTILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTEDVKKVYSLF 429
Query: 311 LDEGRSTQYLREHQNEYMF 329
LDE RS++ L+E+Q++YMF
Sbjct: 430 LDENRSSKILKEYQDDYMF 448
|
Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q9DE27|RUVB2_XENLA RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/264 (66%), Positives = 212/264 (80%), Gaps = 9/264 (3%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
K K+ K+ A R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSR
Sbjct: 196 KATGKITKLGRAFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSR 252
Query: 137 THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196
T GFLALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIECFSFLN
Sbjct: 253 TQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIECFSFLN 312
Query: 197 RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256
RALES+M+PV+I ATNRG+T+IRGT Y SPHGIPIDLLDR++II T PY ++E + ILKI
Sbjct: 313 RALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKETKQILKI 372
Query: 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310
R M D VLT+I L+TSLRY++QLIT AS+VCR+RK TE+ ++DI++VY+LF
Sbjct: 373 RCEEEDVDMSEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDIKRVYSLF 432
Query: 311 LDEGRSTQYLREHQNEYMFDSTVT 334
LDE RSTQY++E+Q+ +MF+ T
Sbjct: 433 LDESRSTQYMKEYQDAFMFNEMKT 456
|
Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 166/241 (68%), Positives = 204/241 (84%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GFLALF+GDTGEI EV
Sbjct: 214 DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEV 272
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALES+M+PV+I ATNRG+
Sbjct: 273 REQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGI 332
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR M D VLT+
Sbjct: 333 TRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTR 392
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY++E+Q+ ++F
Sbjct: 393 IGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLF 452
Query: 330 D 330
+
Sbjct: 453 N 453
|
Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 166/241 (68%), Positives = 204/241 (84%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GFLALF+GDTGEI EV
Sbjct: 214 DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEV 272
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALES+M+PV+I ATNRG+
Sbjct: 273 REQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGI 332
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR M D VLT+
Sbjct: 333 TRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTR 392
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY++E+Q+ ++F
Sbjct: 393 IGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLF 452
Query: 330 D 330
+
Sbjct: 453 N 453
|
Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q2TBU9|RUVB2_BOVIN RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 166/241 (68%), Positives = 204/241 (84%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GFLALF+GDTGEI EV
Sbjct: 214 DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEV 272
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALES+M+PV+I ATNRG+
Sbjct: 273 REQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGI 332
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR M D VLT+
Sbjct: 333 TRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDKKQILRIRCEEEDVEMSEDAYTVLTR 392
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY++E+Q+ ++F
Sbjct: 393 IGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLF 452
Query: 330 D 330
+
Sbjct: 453 N 453
|
Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q16TA2|RUVB2_AEDAE RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 179/259 (69%), Positives = 208/259 (80%), Gaps = 9/259 (3%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
K KV K+ + R DYD A T+ ++CP+GELQKRK VVHTVTLHEIDVINSR
Sbjct: 193 KASGKVSKLGRSFTRAR--DYDATGAQ-TRFVQCPEGELQKRKEVVHTVTLHEIDVINSR 249
Query: 137 THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196
THGFLALFAGDTGEI EVR+QI++KV EWREEGKAEI PGVLFIDE HMLDIECFSFLN
Sbjct: 250 THGFLALFAGDTGEIKQEVRDQINSKVMEWREEGKAEINPGVLFIDEAHMLDIECFSFLN 309
Query: 197 RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256
RALES+M+PVVI ATNRG+TKIRGT Y SPHGIPIDLLDRM+II T PY +EI+ ILKI
Sbjct: 310 RALESDMAPVVIMATNRGITKIRGTNYRSPHGIPIDLLDRMIIIRTVPYSAKEIKEILKI 369
Query: 257 RLMQTD------GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310
R + D L VL +IA +TSLRYAIQ ITTAS+V +RRKA EI +EDIRKVY+LF
Sbjct: 370 RCEEEDCQINNEALMVLGRIATETSLRYAIQSITTASLVSKRRKAAEITVEDIRKVYSLF 429
Query: 311 LDEGRSTQYLREHQNEYMF 329
LDE RS++ ++E+Q+EY+F
Sbjct: 430 LDEKRSSKIMKEYQDEYLF 448
|
Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Aedes aegypti (taxid: 7159) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|P83571|RUVB2_DANRE RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/245 (67%), Positives = 206/245 (84%), Gaps = 7/245 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD A T+ ++CP+GELQKRK VVHTV+LHEIDVINSRT GFLALF+GDTGEI EV
Sbjct: 214 DYDAMGAQ-TQFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEV 272
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+AKV+EWREEGKAEI+PGVLFIDEVHMLDIECFSFLNRALES++SPV+I ATNRG+
Sbjct: 273 REQINAKVSEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDLSPVLIMATNRGI 332
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLR------VLTK 269
T+IRGT Y SPHGIPID+LDR++II T PY ++E + ILKIR + D VLT+
Sbjct: 333 TRIRGTNYQSPHGIPIDMLDRLLIIATTPYTEKETRQILKIRCEEEDVELSEEAHTVLTR 392
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
I +TSLRYAIQLI+TA +VCR+R+ TE+ +EDI++VY+LFLDE RS+QY++E+Q+ ++F
Sbjct: 393 IGQETSLRYAIQLISTAGLVCRKRRGTEVQVEDIKRVYSLFLDEARSSQYMKEYQDSFLF 452
Query: 330 DSTVT 334
+ T T
Sbjct: 453 NETQT 457
|
Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q4P6N7|RUVB2_USTMA RuvB-like helicase 2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RVB2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 159/246 (64%), Positives = 201/246 (81%), Gaps = 7/246 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD +D TK ++CP+GELQ+RK VVHTV+LHEIDVINSRT GFLALF+GDTGEI PE+
Sbjct: 209 DYDAMGSD-TKFVQCPEGELQRRKDVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKPEL 267
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
R+QI+ KV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE++P+VI A+NRG+
Sbjct: 268 RDQINIKVGEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESELAPLVIMASNRGI 327
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
+IRGT + SPHGIPIDLLDR++II T+PY+ +++ IL IR ++ + L VLT+
Sbjct: 328 CRIRGTRFRSPHGIPIDLLDRVLIISTKPYELADLKQILTIRAAEEEVSLKPEALEVLTR 387
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
+A +TSLRYAI LITTA++ +RRKA E+ + D+R+VY LF+DE RS QYL+EH ++M
Sbjct: 388 MASETSLRYAINLITTANLAAKRRKADEVEVADVRRVYNLFVDEKRSVQYLKEHAEQFMN 447
Query: 330 DSTVTG 335
+S G
Sbjct: 448 ESDEYG 453
|
DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|O94692|RUVB2_SCHPO RuvB-like helicase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rvb2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 155/252 (61%), Positives = 194/252 (76%), Gaps = 8/252 (3%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD AD T+ ++CP GE+QKRK VVHTV+LH+IDVINSRT GFLALF+GDTGEI PEV
Sbjct: 208 DYDAMGAD-TRFVQCPQGEIQKRKEVVHTVSLHDIDVINSRTQGFLALFSGDTGEIKPEV 266
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+ KV+EWREEGKAEIVPGVLF+DEVHMLDIECFSF NRALE +++P+VI A+NRG+
Sbjct: 267 REQINTKVSEWREEGKAEIVPGVLFVDEVHMLDIECFSFFNRALEDDLAPIVIMASNRGI 326
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTD------GLRVLTK 269
T+IRGT Y SPHGIP+DLLDRM+II T PY EE++ ILKIR + D L L+
Sbjct: 327 TRIRGTNYRSPHGIPVDLLDRMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYLST 386
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
I +TSLRYA+ LI++++ V +RK+ I DIR+VY LFLD+ RS +YL E+ Y+
Sbjct: 387 IGQETSLRYALLLISSSNQVALKRKSATIEESDIRRVYELFLDQKRSVEYLEEYGKNYIT 446
Query: 330 DSTVTG-GAGDT 340
++ + GA D
Sbjct: 447 ENEWSASGAQDN 458
|
DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 448 | ||||||
| 400261096 | 368 | Chain A, Crystal Structure Of The Tip48 | 0.756 | 0.921 | 0.571 | 1e-111 | |
| 349587568 | 378 | Chain D, The Dodecameric Human Ruvbl1:ru | 0.732 | 0.867 | 0.568 | 1e-105 | |
| 322789185 | 468 | hypothetical protein SINV_15852 [Solenop | 0.522 | 0.5 | 0.730 | 1e-102 | |
| 380014308 | 462 | PREDICTED: LOW QUALITY PROTEIN: ruvB-lik | 0.522 | 0.506 | 0.730 | 1e-101 | |
| 110763884 | 462 | PREDICTED: RuvB-like 2 [Apis mellifera] | 0.522 | 0.506 | 0.730 | 1e-101 | |
| 307191547 | 412 | RuvB-like 2 [Camponotus floridanus] | 0.522 | 0.567 | 0.734 | 1e-101 | |
| 340722677 | 462 | PREDICTED: ruvB-like 2-like [Bombus terr | 0.522 | 0.506 | 0.726 | 1e-101 | |
| 307213226 | 463 | RuvB-like 2 [Harpegnathos saltator] | 0.522 | 0.505 | 0.721 | 1e-101 | |
| 383849742 | 462 | PREDICTED: ruvB-like 2-like [Megachile r | 0.522 | 0.506 | 0.721 | 1e-100 | |
| 344269450 | 421 | PREDICTED: ruvB-like 2-like [Loxodonta a | 0.729 | 0.776 | 0.508 | 1e-100 |
| >gi|400261096|pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261097|pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261098|pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261099|pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261100|pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261101|pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261102|pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261103|pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261104|pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261105|pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261106|pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer gi|400261107|pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/359 (57%), Positives = 263/359 (73%), Gaps = 20/359 (5%)
Query: 3 AAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE 62
A KV E+R++TR+ER+GAHSHIRGLGLDD+LEPR+ SQGMVGQL ARRAAGVVL MI+E
Sbjct: 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIRE 65
Query: 63 EVVMVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWLAD------------VTKDLRC 110
+ ++ G+ + + A + + +T+ R
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 111 PDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEG 170
G ++ + VHTV+LHEIDVINSRT GFLALF+GDTGEI EVREQI+AKV EWREEG
Sbjct: 126 SIG-VRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEG 184
Query: 171 KAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIP 230
KAEI+PGVLFIDEVHMLDIE FSFLNRALES+M+PV+I ATNRG+T+IRGT+Y SPHGIP
Sbjct: 185 KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIP 244
Query: 231 IDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLIT 284
IDLLDR++I+ T PY +++ + IL+IR M D VLT+I L+TSLRYAIQLIT
Sbjct: 245 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT 304
Query: 285 TASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAGDTKME 343
AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY++E+Q+ ++F+ + G DT +E
Sbjct: 305 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNE-LKGETMDTSLE 362
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|349587568|pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii gi|349587569|pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii gi|349587570|pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/348 (56%), Positives = 249/348 (71%), Gaps = 20/348 (5%)
Query: 3 AAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE 62
A KV E+R++TR+ER+GAHSHIRGLGLDD+LEPR+ SQG VGQL ARRAAGVVL I+E
Sbjct: 21 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGXVGQLAARRAAGVVLEXIRE 80
Query: 63 EVVMVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWLAD------------VTKDLRC 110
+ ++ G+ + A + + +T+ R
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRR 140
Query: 111 PDGELQKRKT--VVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 168
G K VVHTV+LHEIDVINSRT GFLALF+GDTGEI EVREQI+AKV EWRE
Sbjct: 141 SIGVRIKEGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 200
Query: 169 EGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG 228
EGKAEI+PGVLFIDEVH LDIE FSFLNRALES+ +PV+I ATNRG+T+IRGT+Y SPHG
Sbjct: 201 EGKAEIIPGVLFIDEVHXLDIESFSFLNRALESDXAPVLIXATNRGITRIRGTSYQSPHG 260
Query: 229 IPIDLLDRMVIIPTQPYQDEEIQAILKIR------LMQTDGLRVLTKIALDTSLRYAIQL 282
IPIDLLDR++I+ T PY +++ + IL+IR D VLT+I L+TSLRYAIQL
Sbjct: 261 IPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEXSEDAYTVLTRIGLETSLRYAIQL 320
Query: 283 ITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFD 330
IT AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY +E+Q+ ++F+
Sbjct: 321 ITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYXKEYQDAFLFN 368
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|322789185|gb|EFZ14571.1| hypothetical protein SINV_15852 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/241 (73%), Positives = 210/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHE+DVINSRTHGFLALF+GDTGEI EV
Sbjct: 215 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEV 273
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
R+QI+AKV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 274 RDQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 333
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 334 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 393
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK TE+ +ED+++VY+LFLDE RSTQ+L+E+Q+++MF
Sbjct: 394 IALETSLRYAIQLITTASLVSRRRKTTEVSIEDVKRVYSLFLDENRSTQFLKEYQDDFMF 453
Query: 330 D 330
+
Sbjct: 454 N 454
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380014308|ref|XP_003691181.1| PREDICTED: LOW QUALITY PROTEIN: ruvB-like 2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/241 (73%), Positives = 211/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHE+DVINSRTHGFLALF+GDTGEI EV
Sbjct: 213 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEV 271
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+AKV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 272 REQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 331
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 332 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 391
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK+TE+ ++D+++VY+LFLDE RSTQ+L+E+Q+++MF
Sbjct: 392 IALETSLRYAIQLITTASLVSRRRKSTEVNIDDVKRVYSLFLDENRSTQFLKEYQDDFMF 451
Query: 330 D 330
+
Sbjct: 452 N 452
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110763884|ref|XP_001122537.1| PREDICTED: RuvB-like 2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/241 (73%), Positives = 211/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHE+DVINSRTHGFLALF+GDTGEI EV
Sbjct: 213 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEV 271
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
REQI+AKV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 272 REQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 331
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 332 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 391
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK+TE+ ++D+++VY+LFLDE RSTQ+L+E+Q+++MF
Sbjct: 392 IALETSLRYAIQLITTASLVSRRRKSTEVNIDDVKRVYSLFLDENRSTQFLKEYQDDFMF 451
Query: 330 D 330
+
Sbjct: 452 N 452
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307191547|gb|EFN75050.1| RuvB-like 2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/241 (73%), Positives = 210/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHEIDVINSRTHGFLALF+GDTGEI EV
Sbjct: 169 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHGFLALFSGDTGEIKSEV 227
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
R+QI+AKV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 228 RDQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 287
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 288 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 347
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK TE+ +ED+++VY+LFLDE RSTQ+L+E+Q+++MF
Sbjct: 348 IALETSLRYAIQLITTASLVSRRRKTTEVSIEDVKRVYSLFLDENRSTQFLKEYQDDFMF 407
Query: 330 D 330
+
Sbjct: 408 N 408
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722677|ref|XP_003399730.1| PREDICTED: ruvB-like 2-like [Bombus terrestris] gi|350424319|ref|XP_003493756.1| PREDICTED: ruvB-like 2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/241 (72%), Positives = 210/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHE+DVINSRTHGFLALF+GDTGEI EV
Sbjct: 213 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEV 271
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
R+QI+AKV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 272 RDQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 331
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 332 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 391
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK+TE+ ++D+++VY LFLDE RSTQ+L+E+Q+++MF
Sbjct: 392 IALETSLRYAIQLITTASLVSRRRKSTEVNIDDVKRVYQLFLDESRSTQFLKEYQDDFMF 451
Query: 330 D 330
+
Sbjct: 452 N 452
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307213226|gb|EFN88721.1| RuvB-like 2 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/241 (72%), Positives = 210/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHEIDVINSRTHGFLALF+GDTGEI EV
Sbjct: 214 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHGFLALFSGDTGEIKSEV 272
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
R+QI+ KV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 273 RDQINGKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 332
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 333 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 392
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK+TE+ ++D+++VY+LF+DE RSTQ+L+E+Q+++MF
Sbjct: 393 IALETSLRYAIQLITTASLVSRRRKSTEVSIDDVKRVYSLFIDENRSTQFLKEYQDDFMF 452
Query: 330 D 330
+
Sbjct: 453 N 453
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849742|ref|XP_003700496.1| PREDICTED: ruvB-like 2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/241 (72%), Positives = 211/241 (87%), Gaps = 7/241 (2%)
Query: 96 DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEV 155
DYD T+ ++CP+GELQKRK VVHTVTLHE+DVINSRTHGFLALF+GDTGEI EV
Sbjct: 213 DYDAT-GSQTRFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEV 271
Query: 156 REQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGV 215
R+QI+AKV EWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE+EM+PVVI ATNRG+
Sbjct: 272 RDQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPVVIMATNRGI 331
Query: 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTK 269
T+IRGT Y SPHGIPIDLLDRM+I+PT PYQ++E++ ILKIR M D L VLT+
Sbjct: 332 TRIRGTNYKSPHGIPIDLLDRMIIVPTSPYQEKELKEILKIRCEEEDCEMADDALTVLTR 391
Query: 270 IALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMF 329
IAL+TSLRYAIQLITTAS+V RRRK+TE+ ++D+++VY+LFLDE RSTQ+L+E+Q++++F
Sbjct: 392 IALETSLRYAIQLITTASLVSRRRKSTEVNIDDVKRVYSLFLDENRSTQFLKEYQDDFLF 451
Query: 330 D 330
+
Sbjct: 452 N 452
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|344269450|ref|XP_003406565.1| PREDICTED: ruvB-like 2-like [Loxodonta africana] | Back alignment and taxonomy information |
|---|
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/407 (50%), Positives = 261/407 (64%), Gaps = 80/407 (19%)
Query: 3 AAAKVQEVREITRVERVGAHSHIR---------------GLGLDDSLEPRKVSQGMVGQ- 46
A KV E+R++TR+ER+GAHSHIR G+G+ +L P + G
Sbjct: 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQVDRGMGMAQALGPDTPFTAIAGSE 65
Query: 47 ------------LQA-RRAAGVVLG----MIKEEVVMVW---PCVMCGR--GKNPQKVKK 84
QA RR+ GV + +I+ EVV + P G GK K +
Sbjct: 66 IFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTE 125
Query: 85 IST---------------------------ATGR--------EEEPDYDGWLADVTKDLR 109
+ T ATG+ DYD + TK ++
Sbjct: 126 METIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDA-MGSQTKFVQ 184
Query: 110 CPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREE 169
CPDGELQKRK VVHTV+LHEIDVINSRT GFLALF+GDTGEI EVREQI+AKV EWREE
Sbjct: 185 CPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 244
Query: 170 GKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGI 229
GKAEI+PGVLFIDEVHMLDIE FSFLNRALES+M+PV+I ATNRG+T+IRGT+Y SPHGI
Sbjct: 245 GKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGI 304
Query: 230 PIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLI 283
PIDLLDR++II T PY +++ + IL+IR M D VLT+I L+TSLRYAIQLI
Sbjct: 305 PIDLLDRLLIISTSPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 364
Query: 284 TTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFD 330
T AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY++E+Q+ ++F+
Sbjct: 365 TAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFN 411
|
Source: Loxodonta africana Species: Loxodonta africana Genus: Loxodonta Family: Elephantidae Order: Proboscidea Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 448 | ||||||
| UNIPROTKB|Q9DE27 | 462 | ruvbl2 "RuvB-like 2" [Xenopus | 0.560 | 0.543 | 0.669 | 3.4e-113 | |
| UNIPROTKB|F1MSD2 | 463 | RUVBL2 "Uncharacterized protei | 0.571 | 0.552 | 0.646 | 7.1e-111 | |
| UNIPROTKB|E2RTC3 | 463 | RUVBL2 "Uncharacterized protei | 0.571 | 0.552 | 0.646 | 7.1e-111 | |
| UNIPROTKB|F1PAP9 | 462 | RUVBL2 "Uncharacterized protei | 0.571 | 0.554 | 0.646 | 7.1e-111 | |
| UNIPROTKB|F1RIP4 | 463 | RUVBL2 "Uncharacterized protei | 0.571 | 0.552 | 0.646 | 7.1e-111 | |
| MGI|MGI:1342299 | 463 | Ruvbl2 "RuvB-like protein 2" [ | 0.571 | 0.552 | 0.646 | 7.1e-111 | |
| RGD|1306509 | 463 | Ruvbl2 "RuvB-like 2 (E. coli)" | 0.571 | 0.552 | 0.646 | 7.1e-111 | |
| UNIPROTKB|G3V8T5 | 463 | Ruvbl2 "RuvB-like 2 (E. coli)" | 0.571 | 0.552 | 0.646 | 7.1e-111 | |
| UNIPROTKB|Q9Y230 | 463 | RUVBL2 "RuvB-like 2" [Homo sap | 0.571 | 0.552 | 0.646 | 9e-111 | |
| UNIPROTKB|Q2TBU9 | 463 | RUVBL2 "RuvB-like 2" [Bos taur | 0.571 | 0.552 | 0.646 | 1.1e-110 |
| UNIPROTKB|Q9DE27 ruvbl2 "RuvB-like 2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 3.4e-113, Sum P(2) = 3.4e-113
Identities = 174/260 (66%), Positives = 211/260 (81%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ A R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 200 KITKLGRAFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 256
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIECFSFLNRALE
Sbjct: 257 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALE 316
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT Y SPHGIPIDLLDR++II T PY ++E + ILKIR
Sbjct: 317 SDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKETKQILKIRCEE 376
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRY++QLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 377 EDVDMSEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 436
Query: 315 RSTQYLREHQNEYMFDSTVT 334
RSTQY++E+Q+ +MF+ T
Sbjct: 437 RSTQYMKEYQDAFMFNEMKT 456
|
|
| UNIPROTKB|F1MSD2 RUVBL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| UNIPROTKB|E2RTC3 RUVBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| UNIPROTKB|F1PAP9 RUVBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| UNIPROTKB|F1RIP4 RUVBL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| MGI|MGI:1342299 Ruvbl2 "RuvB-like protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| RGD|1306509 Ruvbl2 "RuvB-like 2 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| UNIPROTKB|G3V8T5 Ruvbl2 "RuvB-like 2 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| UNIPROTKB|Q9Y230 RUVBL2 "RuvB-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
| UNIPROTKB|Q2TBU9 RUVBL2 "RuvB-like 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 172/266 (64%), Positives = 214/266 (80%)
Query: 81 KVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGF 140
K+ K+ + R DYD + TK ++CPDGELQKRK VVHTV+LHEIDVINSRT GF
Sbjct: 201 KISKLGRSFTRAR--DYDA-MGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGF 257
Query: 141 LALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200
LALF+GDTGEI EVREQI+AKV EWREEGKAEI+PGVLFIDEVHMLDIE FSFLNRALE
Sbjct: 258 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 317
Query: 201 SEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258
S+M+PV+I ATNRG+T+IRGT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR
Sbjct: 318 SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDKKQILRIRCEE 377
Query: 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEG 314
M D VLT+I L+TSLRYAIQLIT AS+VCR+RK TE+ ++DI++VY+LFLDE
Sbjct: 378 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 437
Query: 315 RSTQYLREHQNEYMFDSTVTGGAGDT 340
RSTQY++E+Q+ ++F+ + G DT
Sbjct: 438 RSTQYMKEYQDAFLFNE-LKGETMDT 462
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9WTM5 | RUVB2_MOUSE | 3, ., 6, ., 4, ., 1, 2 | 0.6887 | 0.5223 | 0.5053 | yes | N/A |
| Q54UW5 | RUVB2_DICDI | 3, ., 6, ., 4, ., 1, 2 | 0.6478 | 0.5 | 0.4776 | yes | N/A |
| P0CR28 | RUVB2_CRYNJ | 3, ., 6, ., 4, ., 1, 2 | 0.5703 | 0.5803 | 0.5615 | yes | N/A |
| Q6CT29 | RUVB2_KLULA | 3, ., 6, ., 4, ., 1, 2 | 0.5692 | 0.5602 | 0.5374 | yes | N/A |
| Q9Y230 | RUVB2_HUMAN | 3, ., 6, ., 4, ., 1, 2 | 0.6887 | 0.5223 | 0.5053 | yes | N/A |
| Q6FSF1 | RUVB2_CANGA | 3, ., 6, ., 4, ., 1, 2 | 0.5747 | 0.5625 | 0.5294 | yes | N/A |
| Q4WKH9 | RUVB2_ASPFU | 3, ., 6, ., 4, ., 1, 2 | 0.5538 | 0.5602 | 0.5351 | yes | N/A |
| Q5BGK3 | RUVB2_EMENI | 3, ., 6, ., 4, ., 1, 2 | 0.5270 | 0.5892 | 0.5641 | yes | N/A |
| Q29DI0 | RUVB2_DROPS | 3, ., 6, ., 4, ., 1, 2 | 0.6872 | 0.5580 | 0.5208 | yes | N/A |
| Q12464 | RUVB2_YEAST | 3, ., 6, ., 4, ., 1, 2 | 0.5807 | 0.5602 | 0.5329 | yes | N/A |
| Q6BSB8 | RUVB2_DEBHA | 3, ., 6, ., 4, ., 1, 2 | 0.5852 | 0.5580 | 0.5208 | yes | N/A |
| Q755G5 | RUVB2_ASHGO | 3, ., 6, ., 4, ., 1, 2 | 0.5531 | 0.5892 | 0.5628 | yes | N/A |
| Q6C3X6 | RUVB2_YARLI | 3, ., 6, ., 4, ., 1, 2 | 0.5951 | 0.5357 | 0.5150 | yes | N/A |
| Q9V3K3 | RUVB2_DROME | 3, ., 6, ., 4, ., 1, 2 | 0.6911 | 0.5580 | 0.5197 | yes | N/A |
| O94692 | RUVB2_SCHPO | 3, ., 6, ., 4, ., 1, 2 | 0.6150 | 0.5446 | 0.5247 | yes | N/A |
| P83571 | RUVB2_DANRE | 3, ., 6, ., 4, ., 1, 2 | 0.6775 | 0.5312 | 0.5140 | yes | N/A |
| Q4I948 | RUVB2_GIBZE | 3, ., 6, ., 4, ., 1, 2 | 0.5748 | 0.5468 | 0.5179 | yes | N/A |
| Q2TBU9 | RUVB2_BOVIN | 3, ., 6, ., 4, ., 1, 2 | 0.6887 | 0.5223 | 0.5053 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 448 | |||
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 1e-108 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 1e-104 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 2e-29 | |
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 5e-24 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 6e-17 | |
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 4e-16 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-108
Identities = 138/258 (53%), Positives = 188/258 (72%), Gaps = 10/258 (3%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
+VKK+ + R E D+D + T+ + P+GE+QKRK +V TVTLH++DV N+R
Sbjct: 197 AETGRVKKLGRSKARARE-DFDL---EDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANAR 252
Query: 137 THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196
G L+LF+G TGEIT EVRE+++ KV +W EEGKAE+VPGVLFIDEVHMLDIECFSFLN
Sbjct: 253 AQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLN 312
Query: 197 RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256
RALESE++P++I ATNRG+TKIRGT SPHGIP+DLLDR++II T+PY EEI+ I++I
Sbjct: 313 RALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372
Query: 257 R------LMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310
R + D L LT I +TSLRYA+QL+T AS++ +RR + + +ED+ + LF
Sbjct: 373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432
Query: 311 LDEGRSTQYLREHQNEYM 328
LD RS +Y+ +++ +
Sbjct: 433 LDVKRSVEYVEKYEGLLL 450
|
Length = 450 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = e-104
Identities = 130/219 (59%), Positives = 162/219 (73%), Gaps = 11/219 (5%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
KN KVKK+ + R D+D + T+ + CP GE+ KRK VV TVTLH+IDV N+R
Sbjct: 182 KNTGKVKKLGRSFARAT--DFD---LEATEFVPCPKGEVHKRKEVVQTVTLHDIDVANAR 236
Query: 137 THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196
G L+LF+ GEIT E+RE+I+ KV +W EEGKAEIVPGVLFIDEVHMLDIECFSFLN
Sbjct: 237 PQGILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLDIECFSFLN 296
Query: 197 RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256
RALESE++P+VI ATNRG+ IRGT SPHGIP+DLLDR++II T+PY EEI+ IL+I
Sbjct: 297 RALESELAPIVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYTREEIKQILEI 356
Query: 257 R------LMQTDGLRVLTKIALDTSLRYAIQLITTASVV 289
R + + L +L KI +TSLRYAIQL+T AS++
Sbjct: 357 RAQEEGVEISEEALDLLAKIGEETSLRYAIQLLTPASIL 395
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 343 EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAK 402
E +FV CP GE+ KRK VV TVTLH+IDV N+R G L+LF+ GEIT E+RE+I+ K
Sbjct: 203 EATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQGILSLFSPKKGEITSELREEINKK 262
Query: 403 VTEWREEGHSE 413
V +W EEG +E
Sbjct: 263 VNKWIEEGKAE 273
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-24
Identities = 41/71 (57%), Positives = 55/71 (77%)
Query: 343 EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAK 402
E +FV P+GE+QKRK +V TVTLH++DV N+R G L+LF+G TGEIT EVRE+++ K
Sbjct: 219 EDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEK 278
Query: 403 VTEWREEGHSE 413
V +W EEG +E
Sbjct: 279 VKKWIEEGKAE 289
|
Length = 450 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 7/59 (11%)
Query: 18 RVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRG 76
R+ AHSHIRGLGLD+ E R VS+G+VGQ +AR AAGV++ MIKE + GR
Sbjct: 1 RIAAHSHIRGLGLDEDGEARYVSEGLVGQEKAREAAGVIVEMIKEG-------KIAGRA 52
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 14 TRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE 62
ER+ AHSHI+GLGLD++ + + + G+VGQ +AR AAGV++ MIK+
Sbjct: 12 GERERIAAHSHIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQ 60
|
Length = 450 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 448 | |||
| KOG2680|consensus | 454 | 100.0 | ||
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 100.0 | |
| KOG1942|consensus | 456 | 100.0 | ||
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 100.0 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 100.0 | |
| KOG2028|consensus | 554 | 100.0 | ||
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 100.0 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.97 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.97 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.97 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.97 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.97 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.97 | |
| KOG1942|consensus | 456 | 99.97 | ||
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.96 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.96 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.96 | |
| KOG2680|consensus | 454 | 99.96 | ||
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.96 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.96 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.96 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.96 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.95 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.95 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.95 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.95 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.94 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.94 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.94 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.94 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.94 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.94 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.94 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.93 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.93 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.93 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.92 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.91 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.9 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.9 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.9 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.89 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.88 | |
| KOG0989|consensus | 346 | 99.87 | ||
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.86 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.83 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.82 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.79 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.77 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.77 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.77 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.76 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.75 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 99.74 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.73 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.72 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 99.72 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.72 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.72 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.7 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.7 | |
| KOG0991|consensus | 333 | 99.69 | ||
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 99.68 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.66 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.64 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.64 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.63 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.61 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 99.6 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 99.6 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.59 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.58 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.57 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.57 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.57 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.57 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.56 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.54 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.54 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.51 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.51 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.49 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 99.49 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 99.42 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.42 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.42 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 99.42 | |
| KOG0990|consensus | 360 | 99.34 | ||
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 99.32 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.31 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 99.3 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.3 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.27 | |
| KOG2035|consensus | 351 | 99.26 | ||
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.24 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.21 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.21 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.18 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.17 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.15 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.15 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.04 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.03 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.03 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.02 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.01 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.0 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 98.99 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 98.98 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 98.97 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 98.94 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 98.94 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 98.92 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 98.91 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 98.88 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 98.85 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 98.85 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 98.84 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 98.81 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 98.75 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 98.75 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 98.74 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 98.72 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 98.69 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 98.68 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 98.67 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 98.66 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 98.65 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 98.64 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 98.63 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 98.56 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 98.55 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 98.54 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 98.54 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.49 | |
| KOG1514|consensus | 767 | 98.33 | ||
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 98.31 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.29 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 98.23 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 98.22 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.21 | |
| KOG0734|consensus | 752 | 98.2 | ||
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.16 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 98.11 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 98.11 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.09 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 98.08 | |
| KOG2227|consensus | 529 | 98.03 | ||
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 98.02 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.02 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 98.0 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 97.99 | |
| KOG1969|consensus | 877 | 97.9 | ||
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 97.88 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 97.85 | |
| KOG0730|consensus | 693 | 97.84 | ||
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.83 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 97.8 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 97.8 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 97.66 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 97.64 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 97.63 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 97.58 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.55 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 97.52 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 97.52 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 97.48 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.46 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 97.4 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 97.39 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 97.36 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.34 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 97.34 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 97.34 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 97.31 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 97.28 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 97.25 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 97.21 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.2 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 97.15 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 97.13 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 97.12 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 97.1 | |
| KOG0731|consensus | 774 | 97.04 | ||
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 97.0 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 96.96 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 96.96 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 96.84 | |
| KOG1970|consensus | 634 | 96.84 | ||
| KOG2004|consensus | 906 | 96.76 | ||
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 96.74 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 96.69 | |
| KOG0733|consensus | 802 | 96.46 | ||
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 96.45 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 96.44 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 96.43 | |
| KOG0740|consensus | 428 | 96.39 | ||
| KOG0652|consensus | 424 | 96.37 | ||
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 96.35 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 96.32 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 96.26 | |
| KOG0742|consensus | 630 | 96.12 | ||
| PRK05629 | 318 | hypothetical protein; Validated | 96.12 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 96.1 | |
| KOG0736|consensus | 953 | 96.06 | ||
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 96.03 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 95.94 | |
| KOG0727|consensus | 408 | 95.89 | ||
| KOG0737|consensus | 386 | 95.87 | ||
| KOG0745|consensus | 564 | 95.8 | ||
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 95.77 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 95.76 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.51 | |
| KOG0482|consensus | 721 | 95.15 | ||
| KOG1051|consensus | 898 | 94.87 | ||
| PRK04132 | 846 | replication factor C small subunit; Provisional | 94.83 | |
| KOG0651|consensus | 388 | 94.64 | ||
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 94.56 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.48 | |
| PHA02244 | 383 | ATPase-like protein | 94.28 | |
| PF13173 | 128 | AAA_14: AAA domain | 94.23 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 94.18 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 93.82 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 93.77 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 93.75 | |
| KOG0726|consensus | 440 | 93.63 | ||
| KOG0738|consensus | 491 | 93.53 | ||
| PRK05907 | 311 | hypothetical protein; Provisional | 93.11 | |
| KOG0728|consensus | 404 | 93.06 | ||
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 92.99 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 92.92 | |
| KOG0733|consensus | 802 | 92.39 | ||
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 91.53 | |
| KOG0730|consensus | 693 | 91.28 | ||
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 91.17 | |
| KOG0735|consensus | 952 | 90.94 | ||
| KOG0480|consensus | 764 | 90.41 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 90.36 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 90.25 | |
| KOG0744|consensus | 423 | 89.18 | ||
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 88.6 | |
| KOG0739|consensus | 439 | 88.58 | ||
| cd07979 | 117 | TAF9 TATA Binding Protein (TBP) Associated Factor | 88.55 | |
| KOG0735|consensus | 952 | 88.55 | ||
| KOG1968|consensus | 871 | 88.43 | ||
| COG2842 | 297 | Uncharacterized ATPase, putative transposase [Gene | 87.51 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 87.2 | |
| KOG1808|consensus | 1856 | 87.19 | ||
| cd07981 | 72 | TAF12 TATA Binding Protein (TBP) Associated Factor | 86.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 86.28 | |
| KOG0741|consensus | 744 | 85.97 | ||
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 85.04 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 84.55 | |
| PRK06526 | 254 | transposase; Provisional | 83.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 83.14 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 81.51 | |
| KOG1051|consensus | 898 | 81.46 | ||
| PF05872 | 502 | DUF853: Bacterial protein of unknown function (DUF | 81.22 | |
| PRK08116 | 268 | hypothetical protein; Validated | 80.87 | |
| KOG0732|consensus | 1080 | 80.85 | ||
| PF00808 | 65 | CBFD_NFYB_HMF: Histone-like transcription factor ( | 80.47 | |
| KOG0729|consensus | 435 | 80.39 | ||
| KOG0478|consensus | 804 | 80.07 |
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-89 Score=674.02 Aligned_cols=329 Identities=64% Similarity=1.017 Sum_probs=315.7
Q ss_pred CcccccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC--------------
Q psy1686 2 IAAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV-------------- 67 (448)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g-------------- 67 (448)
||.....|+||+++++||++||||+||||++.++|++.++|||||.++|+|+|++++||++||++|
T Consensus 1 ~a~~~~~e~rDv~~veri~aHSHI~GlGldd~le~~~~s~GmVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKt 80 (454)
T KOG2680|consen 1 MATLDLIEIRDVTRVERIGAHSHIRGLGLDDVLEPRYVSEGMVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKT 80 (454)
T ss_pred CcccccccccchhhhhhccchhhccccCCCcccCcccccccchhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCce
Confidence 567788899999999999999999999999999999999999999999999999999999999986
Q ss_pred --------------CCcccccCCC--------------------------------------------C-----Cc----
Q psy1686 68 --------------WPCVMCGRGK--------------------------------------------N-----PQ---- 80 (448)
Q Consensus 68 --------------pf~~~~G~ei--------------------------------------------~-----GK---- 80 (448)
||+.++|||| | ||
T Consensus 81 AiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRksiGvrIKEetevIEGEVVeiqidRp~tg~g~k~GKlt~k 160 (454)
T KOG2680|consen 81 AIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKEETEVIEGEVVEIQIDRPATGMGSKVGKLTLK 160 (454)
T ss_pred eeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHHhhceEeeheeeeecceEEEEEeeccccCcCcccceeEEe
Confidence 9999999999 1 22
Q ss_pred ch-----------------------hh---hhhhccCcc--------ccccCCCccCCCCccccCCCcccceeeeeeccc
Q psy1686 81 KV-----------------------KK---ISTATGREE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHTVT 126 (448)
Q Consensus 81 tt-----------------------~~---I~~~~gk~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vt 126 (448)
|| |+ |++++||++ +++||+ +|.+++|||||+||++|+||++|+||
T Consensus 161 TtdMEt~ydlG~Kmi~~l~KeKV~aGDVI~idka~GkitKlGrSf~rsrdyDa-mG~~tkfVqCPeGElqkrkevvhtvs 239 (454)
T KOG2680|consen 161 TTDMETIYDLGMKMIESLTKEKVQAGDVITIDKASGKITKLGRSFTRSRDYDA-MGSQTKFVQCPEGELQKRKEVVHTVS 239 (454)
T ss_pred ecchhhHHHHHHHHHHHhhHhhccCCceEEEEcccceeehhhccccccccCCc-cCCccceecCCchhhhheeeeeEeee
Confidence 11 00 999999999 889999 78899999999999999999999999
Q ss_pred hhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCe
Q psy1686 127 LHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPV 206 (448)
Q Consensus 127 LheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi 206 (448)
|||||++|||+|||.|+|+|+++||++|+|++||..+.+|+++|+++++|+||||||||||+.+||+||||++|+.++|+
T Consensus 240 LHeIDViNSrtqG~lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLDIEcFsFlNrAlE~d~~Pi 319 (454)
T KOG2680|consen 240 LHEIDVINSRTQGFLALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPI 319 (454)
T ss_pred ecccccccccccceEEEEeCCcccccHHHHHHHHHHHHHHHhcCCeeeccceEEEeeehhhhhHHHHHHHHHhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHH
Q psy1686 207 VITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 207 ~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL 280 (448)
+++|||+|++.|+||++.+||+||.+||+|++||...||+.+|+++||++|| ++++|+++|.+++...++|||+
T Consensus 320 iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai 399 (454)
T KOG2680|consen 320 IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAI 399 (454)
T ss_pred EEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999899999999
Q ss_pred HHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhh
Q psy1686 281 QLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDS 331 (448)
Q Consensus 281 ~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~ 331 (448)
+|+..|...|.++++..+..+||+++|.+|+|.++|.+||.+++..|||++
T Consensus 400 ~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs~~yl~E~~~~y~~~~ 450 (454)
T KOG2680|consen 400 HLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRSMKYLTEYQSGYLFSE 450 (454)
T ss_pred HHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhhhHHHHHhhhcccccc
Confidence 999999999888888899999999999999999999999999999999975
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-82 Score=632.63 Aligned_cols=313 Identities=52% Similarity=0.854 Sum_probs=295.2
Q ss_pred cccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC-------------------------
Q psy1686 13 ITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV------------------------- 67 (448)
Q Consensus 13 ~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g------------------------- 67 (448)
....+||++||||+|||||+.++|+...+|||||.++|+|+|++++||++||++|
T Consensus 11 ~~~~~~i~aHSHI~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 11 VGERERIAAHSHIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred cchhcccchhccccccccCCCCCEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445789999999999999999999999999999999999999999999999997
Q ss_pred ---CCcccccCCCC------------------------------------------------Cc---------ch-----
Q psy1686 68 ---WPCVMCGRGKN------------------------------------------------PQ---------KV----- 82 (448)
Q Consensus 68 ---pf~~~~G~ei~------------------------------------------------GK---------tt----- 82 (448)
||+.++|||+. +| +|
T Consensus 91 ~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k 170 (450)
T COG1224 91 EDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEK 170 (450)
T ss_pred CCCCceeeccceeeeecccHHHHHHHHHHHhhceEeeeeeEEEEEEEEEEEEeeccCCCCCccccccceEEEEEecccce
Confidence 99999999990 11 01
Q ss_pred -------------------hh---hhhhccCcc--------cc-ccCCCccCCCCccccCCCcccceeeeeeccchhhhh
Q psy1686 83 -------------------KK---ISTATGREE--------EP-DYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEID 131 (448)
Q Consensus 83 -------------------~~---I~~~~gk~~--------a~-~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD 131 (448)
|+ |+++||+++ ++ +||. ++++|||||+|+++|+||++|+|||||||
T Consensus 171 ~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl---~~~~~V~~P~Gev~K~KEi~~~vTLHDlD 247 (450)
T COG1224 171 TLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSKARAREDFDL---EDTRFVPLPEGEVQKRKEIVQTVTLHDLD 247 (450)
T ss_pred EeecCHHHHHHHHHhCcccCCEEEEEccccEEEEeecccccccccccc---cceEEEECCCCceeeeEEEEEEEEehhhh
Confidence 11 999999999 33 6665 78899999999999999999999999999
Q ss_pred hhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe
Q psy1686 132 VINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT 211 (448)
Q Consensus 132 ~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT 211 (448)
++|||++|+.+++++..+||++++|+++|+.+++|+++|+|+++||||||||+||||.+||+||+|++|+.++|++||||
T Consensus 248 v~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~At 327 (450)
T COG1224 248 VANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILAT 327 (450)
T ss_pred hhhccccchHhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 212 NRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 212 ~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
|+|++.|+||++.+||+||.+||+|.+||+++||+.+||++||++|| ++++|+++|+.++...|+|||++||..
T Consensus 328 NRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~p 407 (450)
T COG1224 328 NRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTP 407 (450)
T ss_pred CCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy1686 286 ASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYM 328 (448)
Q Consensus 286 a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l 328 (448)
|..+|..+++..|..+||+++..+|+|.++|++|++.++..++
T Consensus 408 a~iiA~~rg~~~V~~~dVe~a~~lF~D~krSv~~v~~~~~~~~ 450 (450)
T COG1224 408 ASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEYVEKYEGLLL 450 (450)
T ss_pred HHHHHHHhCCCeeehhHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence 9999988889999999999999999999999999998887653
|
|
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-77 Score=585.78 Aligned_cols=321 Identities=45% Similarity=0.768 Sum_probs=304.2
Q ss_pred cccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC-----------------
Q psy1686 5 AKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV----------------- 67 (448)
Q Consensus 5 ~~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g----------------- 67 (448)
++++||++..+..||++|||||||||++...|.....|||||+++|+|+|++++||+++|++|
T Consensus 2 ~~ieeVkst~~~~ria~HsHvkgLGlde~g~~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlA 81 (456)
T KOG1942|consen 2 VKIEEVKSTGRTQRIAAHSHVKGLGLDETGNAVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALA 81 (456)
T ss_pred cchhhhcccccchhhhhhhhccccCcCCCCCeeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHH
Confidence 578899999999999999999999999999999999999999999999999999999999986
Q ss_pred -----------CCcccccCCC----------------------------------------------C--Ccch------
Q psy1686 68 -----------WPCVMCGRGK----------------------------------------------N--PQKV------ 82 (448)
Q Consensus 68 -----------pf~~~~G~ei----------------------------------------------~--GKtt------ 82 (448)
|||.+.|||+ | |||.
T Consensus 82 laisqELG~kvPFcpmvgSEvyS~EvKKTEvLmenfRRaIglRikEtKeVYEGEVtEl~p~e~enp~ggygKtIshv~i~ 161 (456)
T KOG1942|consen 82 LAISQELGPKVPFCPMVGSEVYSNEVKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPVEAENPLGGYGKTISHVVIG 161 (456)
T ss_pred HHHHHHhCCCCCcccccchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhcceeeEeccccccCCCCccCceeeeeEEE
Confidence 9999999999 1 4432
Q ss_pred ---hh---------------------------hhhhccCcc--------ccccCCCccCCCCccccCCCcccceeeeeec
Q psy1686 83 ---KK---------------------------ISTATGREE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHT 124 (448)
Q Consensus 83 ---~~---------------------------I~~~~gk~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~ 124 (448)
++ |+++||.++ |.+||+ ++.+|||+|+||++|+||++|+
T Consensus 162 LKtaKgtKqLkLdPsiyesi~kerv~~GDViYIEaNsGavKrvGRsda~ateFDL---EaeeyVPlPKGeVhKkKeivQd 238 (456)
T KOG1942|consen 162 LKTAKGTKQLKLDPSIYESIQKERVEVGDVIYIEANSGAVKRVGRSDAYATEFDL---EAEEYVPLPKGEVHKKKEIVQD 238 (456)
T ss_pred EeecCCcceeccChHHHHHHHHhhhccCcEEEEEeccchhhcccccccchhhccc---ccceeecCCccchhhhHHHhhh
Confidence 11 888899888 899998 7889999999999999999999
Q ss_pred cchhhhhhhcccccc-------chhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHH
Q psy1686 125 VTLHEIDVINSRTHG-------FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNR 197 (448)
Q Consensus 125 vtLheiD~~nsr~~g-------~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk 197 (448)
|||||+|+||+|||| +.++++..++|||+.+|.+||+.+++|+++|.+|++|+||||||||||+.+||.+|+|
T Consensus 239 VtLhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDiEcFTyL~k 318 (456)
T KOG1942|consen 239 VTLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHK 318 (456)
T ss_pred cchhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhhhHHHHHHHH
Confidence 999999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHH
Q psy1686 198 ALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKI 270 (448)
Q Consensus 198 ~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~ 270 (448)
++|++.+|++|+|||+|.+.|+||+ ..+||+||++||+|.+|+++.+|+++|+++||++|+ ++++|+++++++
T Consensus 319 alES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 319 ALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred HhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 9999999999999999999999975 678999999999999999999999999999999999 999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy1686 271 ALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYM 328 (448)
Q Consensus 271 a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l 328 (448)
+++.++|||+++|..|...|...|+..|..+||+++..+|+|.++|.+.|.+.++.|+
T Consensus 399 gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s~k~l~~~~~k~~ 456 (456)
T KOG1942|consen 399 GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRSAKILEESQNKYL 456 (456)
T ss_pred ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhhHHHHHhhhccCC
Confidence 9999999999999999999887888899999999999999999999999998777664
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-77 Score=602.65 Aligned_cols=268 Identities=62% Similarity=0.971 Sum_probs=209.8
Q ss_pred ccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC----------------------------CC
Q psy1686 18 RVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV----------------------------WP 69 (448)
Q Consensus 18 ~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g----------------------------pf 69 (448)
||++|||||||||++.++|++..+|||||.++|+|+|++++||++||++| ||
T Consensus 1 Ri~~HSHI~GLGld~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 1 RIGAHSHIKGLGLDENGEARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp HHGCCTT--S--B-TTS-B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred CcccccccccCCcCCCCCEeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 79999999999999999999999999999999999999999999999997 99
Q ss_pred cccccCCC----------------------------------------------C-Cc----------ch----------
Q psy1686 70 CVMCGRGK----------------------------------------------N-PQ----------KV---------- 82 (448)
Q Consensus 70 ~~~~G~ei----------------------------------------------~-GK----------tt---------- 82 (448)
+.++|||| + || |+
T Consensus 81 ~~isgSEiyS~e~kKTE~L~qa~RraIGvrIkE~~eV~EGeVvei~~~~~~~~~~~~~~~~~~~i~LkT~~~~~~l~l~~ 160 (398)
T PF06068_consen 81 VSISGSEIYSSEVKKTEALTQAFRRAIGVRIKEEKEVYEGEVVEIKIEEAENPLNYGKTIKHGKITLKTTDMEKTLKLGP 160 (398)
T ss_dssp EEEEGGGG-BTTC-HHHHHHHHHHCSEEEEEEEEECEEEEEEEEEEE---E-TTS-SSSS-EEEEEEEETTCEEEEEE-C
T ss_pred eEcccceeeecccCchHHHHHHHHHhheEEEEEEEEEEEEEEEEEEEeeccCccccCCcceEEEEEEEEcCCceEecCCH
Confidence 99999999 0 11 11
Q ss_pred -------------hh---hhhhccCcc--------ccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccc
Q psy1686 83 -------------KK---ISTATGREE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTH 138 (448)
Q Consensus 83 -------------~~---I~~~~gk~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~ 138 (448)
|+ |+++||+++ +++||+ ++.+|||||+||++|+||++|+|||||||++|||+|
T Consensus 161 ~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D~---~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q 237 (398)
T PF06068_consen 161 KIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYDL---EATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQ 237 (398)
T ss_dssp HHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTSE---CCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC---
T ss_pred HHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhcccc---ccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccc
Confidence 11 999999998 889997 678999999999999999999999999999999999
Q ss_pred cchhhh----cCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCc
Q psy1686 139 GFLALF----AGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRG 214 (448)
Q Consensus 139 g~~a~~----~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~ 214 (448)
|+.++| +++++||++++|++||+.+++|+++|+++++||||||||+||||.+||+||+|++|++++|++|||||++
T Consensus 238 ~~lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAelvpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg 317 (398)
T PF06068_consen 238 DFLSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRG 317 (398)
T ss_dssp ------------------HHHHHHHHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-S
T ss_pred cHHHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEEecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCce
Confidence 988888 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 215 VTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 215 i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
++.|++|+..+||+||.+||+||+|+++.||+.+|+++||+.|| ++++|+++|++++.+.++|||++||..|..
T Consensus 318 ~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~i 397 (398)
T PF06068_consen 318 ITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPASI 397 (398)
T ss_dssp EEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHHH
T ss_pred eeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhhc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999998854
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=360.02 Aligned_cols=210 Identities=19% Similarity=0.299 Sum_probs=186.6
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.||+++|||++ ++++|||+|+.++.++|++||++|++++ +++||||..|||| |++++.+. + ..
T Consensus 12 ~PLA~rmRP~~-lde~vGQ~HLlg~~~~lrr~v~~~~l~S--mIl~GPPG~GKTTlA~liA~~~-------~------~~ 75 (436)
T COG2256 12 MPLAERLRPKS-LDEVVGQEHLLGEGKPLRRAVEAGHLHS--MILWGPPGTGKTTLARLIAGTT-------N------AA 75 (436)
T ss_pred cChHHHhCCCC-HHHhcChHhhhCCCchHHHHHhcCCCce--eEEECCCCCCHHHHHHHHHHhh-------C------Cc
Confidence 49999999999 7999999999999999999999999999 9999999559987 88775543 3 37
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|.. +||+++|+ +|+|+.++++.+.. ..|+ ++|||||||||
T Consensus 76 f~~------------------------------~sAv~~gv-----kdlr~i~e~a~~~~-~~gr----~tiLflDEIHR 115 (436)
T COG2256 76 FEA------------------------------LSAVTSGV-----KDLREIIEEARKNR-LLGR----RTILFLDEIHR 115 (436)
T ss_pred eEE------------------------------eccccccH-----HHHHHHHHHHHHHH-hcCC----ceEEEEehhhh
Confidence 887 88999999 99999999985443 4464 59999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--------
Q psy1686 187 LDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-------- 258 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-------- 258 (448)
||+.+|++|++.+| ++.+++||||||||+|.++++|||||+||.|+|++.+||+++|+ ||
T Consensus 116 fnK~QQD~lLp~vE-----------~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~-ra~~~~~rgl 183 (436)
T COG2256 116 FNKAQQDALLPHVE-----------NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK-RALLDEERGL 183 (436)
T ss_pred cChhhhhhhhhhhc-----------CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHH-HHHhhhhcCC
Confidence 99999999999999 69999999999999999999999999999999999999999999 54
Q ss_pred ------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 ------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 ------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|||+||.+...++. +. .++.+.++++++
T Consensus 184 ~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~~~~~~~-~~-~~~~~~l~~~l~ 236 (436)
T COG2256 184 GGQIIVLDEEALDYLVRLS-NGDARRALNLLELAALSAEP-DE-VLILELLEEILQ 236 (436)
T ss_pred CcccccCCHHHHHHHHHhc-CchHHHHHHHHHHHHHhcCC-Cc-ccCHHHHHHHHh
Confidence 6799999999999 99999999999999887742 22 455899988886
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=325.79 Aligned_cols=224 Identities=18% Similarity=0.311 Sum_probs=188.6
Q ss_pred ccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 25 IRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 25 i~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
++++||+++|||++ ++++|||+|+.+..|+|+++|++|++++ +++||||..|||| |+++.+|.|..
T Consensus 123 ~qh~PLaermRPkt-L~dyvGQ~hlv~q~gllrs~ieq~~ipS--mIlWGppG~GKTtlArlia~tsk~~---------- 189 (554)
T KOG2028|consen 123 LQHKPLAERMRPKT-LDDYVGQSHLVGQDGLLRSLIEQNRIPS--MILWGPPGTGKTTLARLIASTSKKH---------- 189 (554)
T ss_pred hccCChhhhcCcch-HHHhcchhhhcCcchHHHHHHHcCCCCc--eEEecCCCCchHHHHHHHHhhcCCC----------
Confidence 47999999999999 7999999999999999999999999999 9999999659987 88777765432
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
...|+. ++|..++. .|+|+.+.++.+++...++ ++||||||
T Consensus 190 Syrfve------------------------------lSAt~a~t-----~dvR~ife~aq~~~~l~kr----kTilFiDE 230 (554)
T KOG2028|consen 190 SYRFVE------------------------------LSATNAKT-----NDVRDIFEQAQNEKSLTKR----KTILFIDE 230 (554)
T ss_pred ceEEEE------------------------------Eeccccch-----HHHHHHHHHHHHHHhhhcc----eeEEEeHH
Confidence 235776 66666666 9999999999877765553 69999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 184 VHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||| ||.+||.++|++ +++.|++||||||||+|.++.+|+|||.||.+++++.+++..||. |+
T Consensus 231 iHRF--------NksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~-raia~l~ 298 (554)
T KOG2028|consen 231 IHRF--------NKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM-RAIASLG 298 (554)
T ss_pred hhhh--------hhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH-HHHHhhc
Confidence 9998 555555555555 389999999999999999999999999999999999999999999 53
Q ss_pred ---------------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-hhhhC---CCcccHHHHHHHHH---Hhcch
Q psy1686 259 ---------------MQTDGLRVLTKIALDTSLRYAIQLITTASVV-CRRRK---ATEICMEDIRKVYA---LFLDE 313 (448)
Q Consensus 259 ---------------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~-a~~~~---~~~It~e~V~~~~~---lf~D~ 313 (448)
+++.++++|+.++ +||+|.|||.||++... +.+.+ ...++.+||++.++ .+||.
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~ls-dGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr 374 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLS-DGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDR 374 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecc
Confidence 8899999999999 99999999999998543 22222 23699999999986 34554
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=339.46 Aligned_cols=228 Identities=25% Similarity=0.320 Sum_probs=188.8
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
+|+...||+. |+++|||+|+.++ |.+++..||++|-+ .++||...|||| |||.+ +..+|..+ ..+
T Consensus 5 ~L~rKyRP~~-F~evvGQe~v~~~---L~nal~~~ri~hAY-lfsG~RGvGKTt~Ari~A-------kalNC~~~--~~~ 70 (515)
T COG2812 5 VLARKYRPKT-FDDVVGQEHVVKT---LSNALENGRIAHAY-LFSGPRGVGKTTIARILA-------KALNCENG--PTA 70 (515)
T ss_pred HHHHHhCccc-HHHhcccHHHHHH---HHHHHHhCcchhhh-hhcCCCCcCchhHHHHHH-------HHhcCCCC--CCC
Confidence 4677899999 8999999999755 99999999999833 356666359987 88884 44555221 334
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||+|..|+++.. .+++.|||+||++ |+ +++|+.++++ .+....| .++||+|||||
T Consensus 71 e--PC~~C~~Ck~I~~g~~~DviEiDaASn~--gV------------ddiR~i~e~v-~y~P~~~----ryKVyiIDEvH 129 (515)
T COG2812 71 E--PCGKCISCKEINEGSLIDVIEIDAASNT--GV------------DDIREIIEKV-NYAPSEG----RYKVYIIDEVH 129 (515)
T ss_pred C--cchhhhhhHhhhcCCcccchhhhhhhcc--Ch------------HHHHHHHHHh-ccCCccc----cceEEEEecHH
Confidence 4 5566656666665 5999999999997 44 9999877664 3333444 57999999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
||++.+||+|+|++||||.+ +|||||++ +++||++++|||+.|.|++++.++|...|+.-+
T Consensus 130 MLS~~afNALLKTLEEPP~hV~FIlATTe------------~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 130 MLSKQAFNALLKTLEEPPSHVKFILATTE------------PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred hhhHHHHHHHhcccccCccCeEEEEecCC------------cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999998 99999999 999999999999999999999999988888544
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++||.+|++.| +|++|+|+++|+++..++ .+.||.+.|+.+++
T Consensus 198 ~e~~aL~~ia~~a-~Gs~RDalslLDq~i~~~----~~~It~~~v~~~lG 242 (515)
T COG2812 198 IEEDALSLIARAA-EGSLRDALSLLDQAIAFG----EGEITLESVRDMLG 242 (515)
T ss_pred cCHHHHHHHHHHc-CCChhhHHHHHHHHHHcc----CCcccHHHHHHHhC
Confidence 9999999999999 999999999999996653 35799999998886
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=302.65 Aligned_cols=340 Identities=18% Similarity=0.156 Sum_probs=237.9
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+.+ .|.+++++++++| ..+|+||+..|||| |++. |+.++|. ..
T Consensus 6 ~~L~~KyRP~~-f~dvVGQe~iv~---~L~~~i~~~ri~h-a~Lf~GP~GtGKTTlAriL-------Ak~Lnce----~~ 69 (484)
T PRK14956 6 EVLSRKYRPQF-FRDVIHQDLAIG---ALQNALKSGKIGH-AYIFFGPRGVGKTTIARIL-------AKRLNCE----NP 69 (484)
T ss_pred chhHHHhCCCC-HHHHhChHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHH-------HHhcCcc----cc
Confidence 57899999999 899999999985 4999999999987 34789998558876 7766 3444441 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+++.. ..+++|||+++++ |+ +++|+.++.+. .....| .++|+|||||
T Consensus 70 ~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~--gV------------d~IReL~e~l~-~~p~~g----~~KV~IIDEa 130 (484)
T PRK14956 70 IGNEPCNECTSCLEITKGISSDVLEIDAASNR--GI------------ENIRELRDNVK-FAPMGG----KYKVYIIDEV 130 (484)
T ss_pred cCccccCCCcHHHHHHccCCccceeechhhcc--cH------------HHHHHHHHHHH-hhhhcC----CCEEEEEech
Confidence 12346677777777766 4567889887654 33 78887766543 222334 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+|+.+ +||++|+. +++||++++|||++|.|++++.+++.+.|+..+
T Consensus 131 h~Ls~~A~NALLKtLEEPp~~viFILaTte------------~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 131 HMLTDQSFNALLKTLEEPPAHIVFILATTE------------FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred hhcCHHHHHHHHHHhhcCCCceEEEeecCC------------hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 77888887 899999999999999999999999999998665
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++.+|++.| +||+|+|+++|+++..++ ...||.+.|.++++.. +.+....++ +.+..+|.
T Consensus 199 ~~e~eAL~~Ia~~S-~Gd~RdAL~lLeq~i~~~----~~~it~~~V~~~lg~~-~~~~~~~l~---------~si~~~d~ 263 (484)
T PRK14956 199 QYDQEGLFWIAKKG-DGSVRDMLSFMEQAIVFT----DSKLTGVKIRKMIGYH-GIEFLTSFI---------KSLIDPDN 263 (484)
T ss_pred CCCHHHHHHHHHHc-CChHHHHHHHHHHHHHhC----CCCcCHHHHHHHhCCC-CHHHHHHHH---------HHHHcCCc
Confidence 8999999999999 999999999999986543 2369999999888632 322222222 11111221
Q ss_pred CCccc-ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeec
Q psy1686 338 GDTKM-EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNR 416 (448)
Q Consensus 338 ~~~~l-E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~ 416 (448)
...++ ..++++ -.| .+..+++.++.-|-+|++..+..+.. ..-.+++++-.+++-+....+ +.++|.|
T Consensus 264 ~~~al~~l~~l~--~~G--~d~~~~~~~l~~~~r~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ 332 (484)
T PRK14956 264 HSKSLEILESLY--QEG--QDIYKFLWDSIEFTHTLNLIRDSLAD----RESVNFPKEDLQKMKSDFENV---DSSKLNF 332 (484)
T ss_pred HHHHHHHHHHHH--HcC--CCHHHHHHHHHHHHHHHHHHhhcccc----hhhccCCHHHHHHHHHHHHhc---CHHHHHH
Confidence 11111 111222 223 24667888999999999988765321 112466766666655555444 4566766
Q ss_pred h--hhhhhhhhh----hhccCceeEEeccc
Q psy1686 417 V--KLTMFLRGL----IEGTVTAKTLSSPN 440 (448)
Q Consensus 417 ~--~~~~~l~~~----~e~~~~~~~~~~~n 440 (448)
. +++.+...+ +..+.+|.++++.-
T Consensus 333 ~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~ 362 (484)
T PRK14956 333 LSGKLFEIYEKIKTIRLRNSFEIKVFTEIQ 362 (484)
T ss_pred HHHHHHHHHHHHHHhhhccCCCchHHHHHH
Confidence 6 445444444 34456677666544
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-32 Score=289.46 Aligned_cols=229 Identities=21% Similarity=0.250 Sum_probs=185.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|+++.||++ |+++|||+|+.++ |.+++++++++|.+ .|+||+..|||| |++. |+.++|. ..
T Consensus 4 ~~l~~kyRP~~-f~divGq~~v~~~---L~~~~~~~~l~ha~-Lf~Gp~G~GKTt~A~~l-------Ak~l~c~----~~ 67 (509)
T PRK14958 4 QVLARKWRPRC-FQEVIGQAPVVRA---LSNALDQQYLHHAY-LFTGTRGVGKTTISRIL-------AKCLNCE----KG 67 (509)
T ss_pred hhHHHHHCCCC-HHHhcCCHHHHHH---HHHHHHhCCCCeeE-EEECCCCCCHHHHHHHH-------HHHhcCC----CC
Confidence 45788999999 8999999999864 89999999999832 688998558875 7766 3444441 22
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
....|||+|..|+++. .+.+++|+|.++.+ |+ +++|+.++.. ......| .++|+||||+
T Consensus 68 ~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~--~v------------~~iR~l~~~~-~~~p~~~----~~kV~iIDE~ 128 (509)
T PRK14958 68 VSANPCNDCENCREIDEGRFPDLFEVDAASRT--KV------------EDTRELLDNI-PYAPTKG----RFKVYLIDEV 128 (509)
T ss_pred CCcccCCCCHHHHHHhcCCCceEEEEcccccC--CH------------HHHHHHHHHH-hhccccC----CcEEEEEECh
Confidence 3445777777777764 47899999988643 33 8899877654 2222334 4699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+|+.+ +||++|++ ++++|++++|||++|+|++++.+++.+.|+..+
T Consensus 129 ~~ls~~a~naLLk~LEepp~~~~fIlattd------------~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 129 HMLSGHSFNALLKTLEEPPSHVKFILATTD------------HHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred HhcCHHHHHHHHHHHhccCCCeEEEEEECC------------hHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 68888887 889999999999999999999999988776554
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+++..+ +.+.||.++|..+++
T Consensus 197 ~~~~~al~~ia~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 197 EFENAALDLLARAA-NGSVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred CCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 8999999999999 99999999999988543 345799999999875
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=292.64 Aligned_cols=230 Identities=22% Similarity=0.271 Sum_probs=185.6
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++|++++||++ |+++|||+|+.+ .|.+++++|+++|. .+|+||+..|||| +++. |+.++|. ..
T Consensus 4 ~~La~KyRP~~-f~divGQe~vv~---~L~~~l~~~rl~hA-yLf~Gp~GvGKTTlAr~l-------Ak~L~c~----~~ 67 (647)
T PRK07994 4 QVLARKWRPQT-FAEVVGQEHVLT---ALANALDLGRLHHA-YLFSGTRGVGKTTIARLL-------AKGLNCE----TG 67 (647)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHhhhhc----cC
Confidence 57889999999 899999999986 58999999999982 2689998558876 7766 3444441 22
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+..-|||.|..|+++. .+++++++|.++.. |+ +++|+.++... ....+| .++||||||+
T Consensus 68 ~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~--~V------------ddiR~li~~~~-~~p~~g----~~KV~IIDEa 128 (647)
T PRK07994 68 ITATPCGECDNCREIEQGRFVDLIEIDAASRT--KV------------EDTRELLDNVQ-YAPARG----RFKVYLIDEV 128 (647)
T ss_pred CCCCCCCCCHHHHHHHcCCCCCceeecccccC--CH------------HHHHHHHHHHH-hhhhcC----CCEEEEEech
Confidence 3445777777777776 47899999887422 23 88998776543 323345 3599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|||+.+ +||++|+. +++||++++|||+.|+|++++.++|.+.|+.++
T Consensus 129 h~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~------------~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred HhCCHHHHHHHHHHHHcCCCCeEEEEecCC------------ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988 78888887 789999999999999999999999999988644
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.| +||+|+|+++++++..+ +...|+.++|+.+++.
T Consensus 197 ~~e~~aL~~Ia~~s-~Gs~R~Al~lldqaia~----~~~~it~~~v~~~lg~ 243 (647)
T PRK07994 197 PFEPRALQLLARAA-DGSMRDALSLTDQAIAS----GNGQVTTDDVSAMLGT 243 (647)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 8999999999999 99999999999988543 3446999999887763
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=295.35 Aligned_cols=230 Identities=22% Similarity=0.258 Sum_probs=184.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+.|++++||++ |+++|||+|+++ .|++++++|+++|.+ +|+|++..|||| +++. ++.++|. ..
T Consensus 4 ~vLarKYRPqt-FdEVIGQe~Vv~---~L~~aL~~gRL~HAy-LFtGPpGvGKTTlAriL-------AKaLnCe----~~ 67 (830)
T PRK07003 4 QVLARKWRPKD-FASLVGQEHVVR---ALTHALDGGRLHHAY-LFTGTRGVGKTTLSRIF-------AKALNCE----TG 67 (830)
T ss_pred HhHHHHhCCCc-HHHHcCcHHHHH---HHHHHHhcCCCCeEE-EEECCCCCCHHHHHHHH-------HHHhcCc----cC
Confidence 35788999999 899999999986 589999999999832 588998558876 6665 3444441 12
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+++.. +.+++|||..+++ |+ +++|+.++... .....+ .++||||||+
T Consensus 68 ~~~~PCG~C~sCr~I~~G~h~DviEIDAas~r--gV------------DdIReLIe~a~-~~P~~g----r~KVIIIDEa 128 (830)
T PRK07003 68 VTSQPCGVCRACREIDEGRFVDYVEMDAASNR--GV------------DEMAALLERAV-YAPVDA----RFKVYMIDEV 128 (830)
T ss_pred CCCCCCcccHHHHHHhcCCCceEEEecccccc--cH------------HHHHHHHHHHH-hccccC----CceEEEEeCh
Confidence 23346677777777654 6789999987654 33 88998887553 222223 3599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+||+|+|++|+++.+ +||++||. +++||++|+|||+.|+|++++.++|.+.|+..+
T Consensus 129 h~LT~~A~NALLKtLEEPP~~v~FILaTtd------------~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI 196 (830)
T PRK07003 129 HMLTNHAFNAMLKTLEEPPPHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI 196 (830)
T ss_pred hhCCHHHHHHHHHHHHhcCCCeEEEEEECC------------hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 88999988 889999999999999999999999998888544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+||++|+++..+. ...|+.++|+.+++.
T Consensus 197 ~id~eAL~lIA~~A-~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG~ 243 (830)
T PRK07003 197 AFEPQALRLLARAA-QGSMRDALSLTDQAIAYS----ANEVTETAVSGMLGA 243 (830)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCC
Confidence 8999999999999 999999999999986543 346899888887753
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=276.72 Aligned_cols=105 Identities=45% Similarity=0.720 Sum_probs=101.8
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeechh
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNRVK 418 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~~~ 418 (448)
++++++++|||||+|+|+|.||++|+|||||||++|||+||++++|++...||++|+|++||++|++|++||+|||||||
T Consensus 215 ~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGV 294 (450)
T COG1224 215 DFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGV 294 (450)
T ss_pred cccccceEEEECCCCceeeeEEEEEEEEehhhhhhhccccchHhhhcCCcccCCHHHHHHHHHHHHHHHhcCcEEeecce
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h------------hhhhhhhhhccCceeEEecccccc
Q psy1686 419 L------------TMFLRGLIEGTVTAKTLSSPNKLL 443 (448)
Q Consensus 419 ~------------~~~l~~~~e~~~~~~~~~~~n~~~ 443 (448)
| |||||+++|+.++|+||||||||.
T Consensus 295 LFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~ 331 (450)
T COG1224 295 LFIDEVHMLDIECFSFLNRALESELAPIIILATNRGM 331 (450)
T ss_pred EEEechhhhhHHHHHHHHHHhhcccCcEEEEEcCCce
Confidence 9 999999999999999999999986
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=283.89 Aligned_cols=229 Identities=23% Similarity=0.272 Sum_probs=184.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+.+ .|.++|++|+++| ..+|+||+..|||| |++. |+.++|. ..
T Consensus 3 ~~LarKyRPkt-FddVIGQe~vv~---~L~~aI~~grl~H-AyLF~GPpGvGKTTlAriL-------AK~LnC~----~~ 66 (702)
T PRK14960 3 QVLARKYRPRN-FNELVGQNHVSR---ALSSALERGRLHH-AYLFTGTRGVGKTTIARIL-------AKCLNCE----TG 66 (702)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHH-------HHHhCCC----cC
Confidence 46889999998 899999999965 5899999999987 23789999558876 7766 4444441 12
Q ss_pred ccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+ ..+++++++|+++.+ |+ +++|+.++... .....| .++|+||||+
T Consensus 67 ~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~--~V------------ddIReli~~~~-y~P~~g----k~KV~IIDEV 127 (702)
T PRK14960 67 VTSTPCEVCATCKAVNEGRFIDLIEIDAASRT--KV------------EDTRELLDNVP-YAPTQG----RFKVYLIDEV 127 (702)
T ss_pred CCCCCCccCHHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHHh-hhhhcC----CcEEEEEech
Confidence 233455666666655 458899999997543 23 78998777543 222334 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+|++|+|++|+++.+ +||++|+. ++++|.+++|||++|+|+|++.+++.+.|+..+
T Consensus 128 h~LS~~A~NALLKtLEEPP~~v~FILaTtd------------~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 128 HMLSTHSFNALLKTLEEPPEHVKFLFATTD------------PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred HhcCHHHHHHHHHHHhcCCCCcEEEEEECC------------hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998876 78888877 788999999999999999999999998887544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +.+.|+.++|..+++
T Consensus 196 ~id~eAL~~IA~~S-~GdLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 196 AADQDAIWQIAESA-QGSLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 9999999999999 99999999999988543 355799999998876
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=277.57 Aligned_cols=228 Identities=18% Similarity=0.222 Sum_probs=184.5
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|+.++||++ |+++|||+++.+ .|.+++.+|++++. .+|+||+..|||| |+|.+ +.++|..|+
T Consensus 2 ~la~KyRP~~-f~dliGQe~vv~---~L~~a~~~~ri~ha-~Lf~Gp~G~GKTT~ArilA-------k~LnC~~~~---- 65 (491)
T PRK14964 2 NLALKYRPSS-FKDLVGQDVLVR---ILRNAFTLNKIPQS-ILLVGASGVGKTTCARIIS-------LCLNCSNGP---- 65 (491)
T ss_pred ChhHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCce-EEEECCCCccHHHHHHHHH-------HHHcCcCCC----
Confidence 5788999998 899999999975 58999999999863 4689998558876 77763 344442222
Q ss_pred cccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
..-|||.|..|+++. .+.+++|||+++++ |+ +++|+.++.+. .....+ .++|+||||+|
T Consensus 66 ~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~--~v------------ddIR~Iie~~~-~~P~~~----~~KVvIIDEah 126 (491)
T PRK14964 66 TSDPCGTCHNCISIKNSNHPDVIEIDAASNT--SV------------DDIKVILENSC-YLPISS----KFKVYIIDEVH 126 (491)
T ss_pred CCCCccccHHHHHHhccCCCCEEEEecccCC--CH------------HHHHHHHHHHH-hccccC----CceEEEEeChH
Confidence 223556666666655 58999999998654 33 89998887652 222333 46999999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
||+.++||+|+|++|+|+.+ +||++|+. +.++|++++|||++|.|++++.+++.+.|...+
T Consensus 127 ~Ls~~A~NaLLK~LEePp~~v~fIlatte------------~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 127 MLSNSAFNALLKTLEEPAPHVKFILATTE------------VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999887 78888876 788999999999999999999999999988655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+++..++ ++.||.++|+++++
T Consensus 195 i~~eAL~lIa~~s-~GslR~alslLdqli~y~----~~~It~e~V~~llg 239 (491)
T PRK14964 195 HDEESLKLIAENS-SGSMRNALFLLEQAAIYS----NNKISEKSVRDLLG 239 (491)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 9999999999999 999999999999987664 24799999998764
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=278.86 Aligned_cols=106 Identities=47% Similarity=0.765 Sum_probs=77.8
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccc----cCCCCCCChHHHHHHHHHHHHHHHhcccee
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALF----AGDTGEITPEVREQISAKVTEWREEGHSEK 414 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~----~~~~~EI~~e~R~~i~~~v~~~i~~g~ael 414 (448)
++++++++||+||+|+|+|.||++|++||||||++|||+||++++| +|+++||++|+|+|||++|++|+++|+|||
T Consensus 198 ~~D~~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q~~lslf~~~~~~~~~EI~~elR~eInk~V~~wieegkAel 277 (398)
T PF06068_consen 198 DYDLEATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQDFLSLFGQLFKGDTGEITDELREEINKKVNKWIEEGKAEL 277 (398)
T ss_dssp TTSECCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC---------------------HHHHHHHHHHHHHHHHCTSEEE
T ss_pred ccccccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccccHHHHHHhhcCCCcccchHHHHHHHhHHHHHHHhcCceEE
Confidence 3477889999999999999999999999999999999999998877 888999999999999999999999999999
Q ss_pred echhh------------hhhhhhhhhccCceeEEeccccccc
Q psy1686 415 NRVKL------------TMFLRGLIEGTVTAKTLSSPNKLLK 444 (448)
Q Consensus 415 v~~~~------------~~~l~~~~e~~~~~~~~~~~n~~~~ 444 (448)
||||| |||||+++|+.++|+||+|||||..
T Consensus 278 vpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg~~ 319 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRGIT 319 (398)
T ss_dssp EE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-SEE
T ss_pred ecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCceee
Confidence 99999 9999999999999999999999864
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=277.22 Aligned_cols=229 Identities=14% Similarity=0.154 Sum_probs=183.5
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
|.+++||++ |+++|||+|+.+ .|.++|++|+++|. .+|+||+..|||| |++. |+.+.|.. ...
T Consensus 3 l~~kyRP~~-f~eivGq~~i~~---~L~~~i~~~r~~ha-~Lf~Gp~G~GKTt~A~~l-------Ak~l~c~~----~~~ 66 (584)
T PRK14952 3 LYRKYRPAT-FAEVVGQEHVTE---PLSSALDAGRINHA-YLFSGPRGCGKTSSARIL-------ARSLNCAQ----GPT 66 (584)
T ss_pred HHHHhCCCc-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHHhcccc----CCC
Confidence 567899999 899999999975 49999999999992 2688998558875 6666 34444411 122
Q ss_pred ccCCCcccceeeeee----ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 109 RCPDGELQKRKTVVH----TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 109 ~~p~ge~~k~kei~~----~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.-|||+|..|+++.. ++++.++|.++++ |+ +++|+.++... .....+ .++|+||||+
T Consensus 67 ~~pCg~C~~C~~i~~~~~~~~dvieidaas~~--gv------------d~iRel~~~~~-~~P~~~----~~KVvIIDEa 127 (584)
T PRK14952 67 ATPCGVCESCVALAPNGPGSIDVVELDAASHG--GV------------DDTRELRDRAF-YAPAQS----RYRIFIVDEA 127 (584)
T ss_pred CCcccccHHHHHhhcccCCCceEEEecccccc--CH------------HHHHHHHHHHH-hhhhcC----CceEEEEECC
Confidence 347788888887752 5788899887654 33 88888766542 223334 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+++.+ +||++|+. +++++++|+|||++|.|++++.+++.+.|...+
T Consensus 128 h~Lt~~A~NALLK~LEEpp~~~~fIL~tte------------~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 128 HMVTTAGFNALLKIVEEPPEHLIFIFATTE------------PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CcCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 88888877 789999999999999999999999988887544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+|+++|+++..++ ++..||.++|..+++.
T Consensus 196 ~i~~~al~~Ia~~s-~GdlR~aln~Ldql~~~~---~~~~It~~~v~~llg~ 243 (584)
T PRK14952 196 VVDDAVYPLVIRAG-GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLLGA 243 (584)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHHCC
Confidence 9999999999999 999999999999986543 2457999999988753
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=280.80 Aligned_cols=234 Identities=24% Similarity=0.281 Sum_probs=183.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC-CC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD-VT 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~-~~ 105 (448)
..|++++||++ |+++|||+|+.+ .|.+++++||++|. .+|+|++..|||| +++..+ .++|.... ..
T Consensus 4 ~vLarKYRPqt-FddVIGQe~vv~---~L~~al~~gRLpHA-~LFtGP~GvGKTTLAriLAk-------aLnC~~p~~~~ 71 (700)
T PRK12323 4 QVLARKWRPRD-FTTLVGQEHVVR---ALTHALEQQRLHHA-YLFTGTRGVGKTTLSRILAK-------SLNCTGADGEG 71 (700)
T ss_pred hhHHHHhCCCc-HHHHcCcHHHHH---HHHHHHHhCCCceE-EEEECCCCCCHHHHHHHHHH-------HhcCCCccccc
Confidence 35788999999 899999999985 59999999999982 2689998448875 776533 33330000 01
Q ss_pred CccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
....-|||.|..|+++. .+.+++|||.++++ |+ +++|+.++... .....| .++|+||||
T Consensus 72 g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~--gV------------DdIReLie~~~-~~P~~g----r~KViIIDE 132 (700)
T PRK12323 72 GITAQPCGQCRACTEIDAGRFVDYIEMDAASNR--GV------------DEMAQLLDKAV-YAPTAG----RFKVYMIDE 132 (700)
T ss_pred cCCCCCCcccHHHHHHHcCCCCcceEecccccC--CH------------HHHHHHHHHHH-hchhcC----CceEEEEEC
Confidence 12233566666666554 57899999988543 33 88998777543 222334 359999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
+|||+.++||+|+|++|+++.+ +||++||. +++|+++|+|||++|+|++++.+++.+.|+..+
T Consensus 133 ah~Ls~~AaNALLKTLEEPP~~v~FILaTte------------p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 133 VHMLTNHAFNAMLKTLEEPPEHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred hHhcCHHHHHHHHHhhccCCCCceEEEEeCC------------hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence 9999999999999999998876 89999998 889999999999999999999999998887543
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++++|++.+ +||+|+|+++++++..+ +...|+.++|.++++.
T Consensus 201 i~~d~eAL~~IA~~A-~Gs~RdALsLLdQaia~----~~~~It~~~V~~~LG~ 248 (700)
T PRK12323 201 IAHEVNALRLLAQAA-QGSMRDALSLTDQAIAY----SAGNVSEEAVRGMLGA 248 (700)
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----ccCCcCHHHHHHHhCC
Confidence 8999999999999 99999999999988653 2346999999888764
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=285.26 Aligned_cols=229 Identities=21% Similarity=0.290 Sum_probs=180.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+++. |+++|.+||++|. .+|+||+..|||| +++. |+.++| + ..
T Consensus 4 ~~LaeKyRP~t-FddIIGQe~Iv~~---LknaI~~~rl~HA-yLFtGPpGtGKTTLARiL-------Ak~Lnc---e-~~ 67 (944)
T PRK14949 4 QVLARKWRPAT-FEQMVGQSHVLHA---LTNALTQQRLHHA-YLFTGTRGVGKTSLARLF-------AKGLNC---E-QG 67 (944)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHHH---HHHHHHhCCCCeE-EEEECCCCCCHHHHHHHH-------HHhccC---c-cC
Confidence 57899999999 8999999999854 8999999999992 2689998548876 7765 334443 1 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+++.. +++++++|.++.+ |+ +++|+.+... ......| .++||||||+
T Consensus 68 ~~~~pCg~C~sC~~i~~g~~~DviEidAas~~--kV------------DdIReLie~v-~~~P~~g----k~KViIIDEA 128 (944)
T PRK14949 68 VTATPCGVCSSCVEIAQGRFVDLIEVDAASRT--KV------------DDTRELLDNV-QYRPSRG----RFKVYLIDEV 128 (944)
T ss_pred CCCCCCCCchHHHHHhcCCCceEEEecccccc--CH------------HHHHHHHHHH-HhhhhcC----CcEEEEEech
Confidence 22346677777776665 6778888876432 23 7898877654 3333344 3599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||++++||+|+|++|+|+.+ +||++|+. +++|+++|+|||++|+|+|++.+++.+.|+.++
T Consensus 129 h~LT~eAqNALLKtLEEPP~~vrFILaTTe------------~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 129 HMLSRSSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred HhcCHHHHHHHHHHHhccCCCeEEEEECCC------------chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 68887776 778999999999999999999999999988654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++++++..+ +...|+.+.|.++++
T Consensus 197 ~~edeAL~lIA~~S-~Gd~R~ALnLLdQala~----~~~~It~~~V~~llG 242 (944)
T PRK14949 197 PFEAEALTLLAKAA-NGSMRDALSLTDQAIAF----GGGQVMLTQVQTMLG 242 (944)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 8999999999999 99999999999988643 334688887776654
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=278.97 Aligned_cols=234 Identities=23% Similarity=0.297 Sum_probs=182.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC-C
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV-T 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~-~ 105 (448)
+.|++++||++ |+++|||+|+.+ .|.+++++|+++|. ..|+||+..|||| +++.++. ++|...+. .
T Consensus 4 ~vla~KyRP~~-f~dviGQe~vv~---~L~~~l~~~rl~ha-~Lf~Gp~GvGKTtlAr~lAk~-------LnC~~~~~~~ 71 (618)
T PRK14951 4 LVLARKYRPRS-FSEMVGQEHVVQ---ALTNALTQQRLHHA-YLFTGTRGVGKTTVSRILAKS-------LNCQGPDGQG 71 (618)
T ss_pred HHHHHHHCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHHHHH-------hcCCCccccc
Confidence 35778999998 899999999975 59999999999983 2689998558876 7766433 33310000 0
Q ss_pred CccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
.-..-|||.|..|+.+ ..+.+++|+|.+..+ |+ +++|+.++.+. .....| .++|+||||
T Consensus 72 ~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~--~V------------d~iReli~~~~-~~p~~g----~~KV~IIDE 132 (618)
T PRK14951 72 GITATPCGVCQACRDIDSGRFVDYTELDAASNR--GV------------DEVQQLLEQAV-YKPVQG----RFKVFMIDE 132 (618)
T ss_pred CCCCCCCCccHHHHHHHcCCCCceeecCccccc--CH------------HHHHHHHHHHH-hCcccC----CceEEEEEC
Confidence 0112355666555555 447899999987653 23 88998886542 222233 359999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
+|||+.++||+|+|++|+++.+ +||++|++ ++++|.+++|||++|+|++++.+++.+.|+..+
T Consensus 133 vh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd------------~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 133 VHMLTNTAFNAMLKTLEEPPEYLKFVLATTD------------PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred hhhCCHHHHHHHHHhcccCCCCeEEEEEECC------------chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999887 88899887 788999999999999999999999998887654
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +...||.++|+++++.
T Consensus 201 i~ie~~AL~~La~~s-~GslR~al~lLdq~ia~----~~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 201 VPAEPQALRLLARAA-RGSMRDALSLTDQAIAF----GSGQLQEAAVRQMLGS 248 (618)
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcC
Confidence 8999999999999 99999999999988654 3457999999988763
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=272.08 Aligned_cols=236 Identities=18% Similarity=0.192 Sum_probs=185.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+++++.||++ |+++|||+++.+ .|.+++.+|++++. .+++||+..|||| |++.+ +.++|..+....
T Consensus 9 ~~la~kyRP~~-f~dliGq~~vv~---~L~~ai~~~ri~~a-~Lf~Gp~G~GKTT~ArilA-------k~Lnc~~~~~~~ 76 (507)
T PRK06645 9 IPFARKYRPSN-FAELQGQEVLVK---VLSYTILNDRLAGG-YLLTGIRGVGKTTSARIIA-------KAVNCSALITEN 76 (507)
T ss_pred cchhhhhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCce-EEEECCCCCCHHHHHHHHH-------HHhcCccccccC
Confidence 68899999999 899999999975 58999999999863 5789999558875 77663 333331111112
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
....|||.|..|+.+. .+.+++|||+++.. |+ +++|+.++.+.. ....+ .++|+||||+
T Consensus 77 ~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~--~v------------d~Ir~iie~a~~-~P~~~----~~KVvIIDEa 137 (507)
T PRK06645 77 TTIKTCEQCTNCISFNNHNHPDIIEIDAASKT--SV------------DDIRRIIESAEY-KPLQG----KHKIFIIDEV 137 (507)
T ss_pred cCcCCCCCChHHHHHhcCCCCcEEEeeccCCC--CH------------HHHHHHHHHHHh-ccccC----CcEEEEEECh
Confidence 2234455555555554 47899999987643 33 899998877632 22333 3699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+|++|+|++|+++.+ +||++|+. +.++|++++|||++|.|++++.+|+.++|+.++
T Consensus 138 ~~Ls~~a~naLLk~LEepp~~~vfI~aTte------------~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 138 HMLSKGAFNALLKTLEEPPPHIIFIFATTE------------VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred hhcCHHHHHHHHHHHhhcCCCEEEEEEeCC------------hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998877 77788876 678999999999999999999999999998666
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++|+++|++.+ +||+|+|+++|+++..++.. .+..||.++|+++++
T Consensus 206 ~ie~eAL~~Ia~~s-~GslR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 206 KTDIEALRIIAYKS-EGSARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 8999999999999 99999999999999776531 234799999999875
|
|
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=261.64 Aligned_cols=105 Identities=29% Similarity=0.488 Sum_probs=101.4
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhcccccc-------ccccCCCCCCChHHHHHHHHHHHHHHHhcc
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFL-------ALFAGDTGEITPEVREQISAKVTEWREEGH 411 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~-------~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~ 411 (448)
.|++|+++|||+|+|+|+|.||++|+|||||||++||||||++ ++++++++|||+++|.+||++||+|||+|.
T Consensus 213 eFDLEaeeyVPlPKGeVhKkKeivQdVtLhDLD~ANARPqGgqdvlsmmgqlmkPkKTEITdkLR~eiNkvVn~Yid~Gv 292 (456)
T KOG1942|consen 213 EFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGV 292 (456)
T ss_pred hcccccceeecCCccchhhhHHHhhhcchhhcccccCCCCccchHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcch
Confidence 4689999999999999999999999999999999999999975 688999999999999999999999999999
Q ss_pred ceeechhh------------hhhhhhhhhccCceeEEecccccc
Q psy1686 412 SEKNRVKL------------TMFLRGLIEGTVTAKTLSSPNKLL 443 (448)
Q Consensus 412 aelv~~~~------------~~~l~~~~e~~~~~~~~~~~n~~~ 443 (448)
|||||||| |+|||++|||..+|+||.|||||.
T Consensus 293 AElvPGVLFIDEVhMLDiEcFTyL~kalES~iaPivifAsNrG~ 336 (456)
T KOG1942|consen 293 AELVPGVLFIDEVHMLDIECFTYLHKALESPIAPIVIFASNRGM 336 (456)
T ss_pred hhhcCcceEeeehhhhhhHHHHHHHHHhcCCCCceEEEecCCcc
Confidence 99999999 999999999999999999999985
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-30 Score=277.32 Aligned_cols=310 Identities=17% Similarity=0.214 Sum_probs=214.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+-|++++||++ |+++|||+|+.+ .|.++|++|+++|. .+|+|||..|||+ +++. |+.++|. ..
T Consensus 4 ~~l~~k~RP~~-f~~iiGq~~v~~---~L~~~i~~~~~~ha-yLf~Gp~G~GKtt~A~~l-------ak~l~c~----~~ 67 (576)
T PRK14965 4 LVLARKYRPQT-FSDLTGQEHVSR---TLQNAIDTGRVAHA-FLFTGARGVGKTSTARIL-------AKALNCE----QG 67 (576)
T ss_pred HHHHHHhCCCC-HHHccCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHhhcCC----CC
Confidence 34678999998 899999999974 58999999999882 2689999558875 6655 3334431 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||+|..|+++.. +++++++|.++++ |+ +++|+.++.+ ......+ .++|+||||+
T Consensus 68 ~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~--~v------------~~ir~l~~~~-~~~p~~~----~~KVvIIdev 128 (576)
T PRK14965 68 LTAEPCNVCPPCVEITEGRSVDVFEIDGASNT--GV------------DDIRELRENV-KYLPSRS----RYKIFIIDEV 128 (576)
T ss_pred CCCCCCCccHHHHHHhcCCCCCeeeeeccCcc--CH------------HHHHHHHHHH-HhccccC----CceEEEEECh
Confidence 22336677777766654 6778888876543 23 7888766554 2222233 3699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+.++||+|+|++|+|+.+ +||++|+. +++||++++|||++|.|++++.++|...|...+
T Consensus 129 ~~Lt~~a~naLLk~LEepp~~~~fIl~t~~------------~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi 196 (576)
T PRK14965 129 HMLSTNAFNALLKTLEEPPPHVKFIFATTE------------PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI 196 (576)
T ss_pred hhCCHHHHHHHHHHHHcCCCCeEEEEEeCC------------hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999887 88888887 799999999999999999999999988877543
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++.+|++.+ +||+|+|+++|+++..++ +..|+.++|..+++. .+.....+++. .+..++.
T Consensus 197 ~i~~~al~~la~~a-~G~lr~al~~Ldqliay~----g~~It~edV~~llG~-~~~~~l~~ll~---------al~~~d~ 261 (576)
T PRK14965 197 SISDAALALVARKG-DGSMRDSLSTLDQVLAFC----GDAVGDDDVAELLGV-VDRRLLLDISA---------AVFGRDT 261 (576)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHhCC-CCHHHHHHHHH---------HHHcCCH
Confidence 9999999999999 999999999999886654 236999999988653 23222222221 1111111
Q ss_pred CCccc-ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 338 GDTKM-EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 338 ~~~~l-E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.. .+ -.+++.. .| .....+++.++.|-+|++..+..+... ....++++-++.+.+..+.|=.
T Consensus 262 ~~-al~~l~~l~~--~G--~~~~~~l~~Ll~~~RdLl~~k~~~~~~----~~l~~~~~~~~~~~~~A~~~s~ 324 (576)
T PRK14965 262 RA-LLEIVERVDE--FG--YNMRQFCQELIDHLRNLVVLRAVGEPG----DLLDLSEAELAELRAQAAAADA 324 (576)
T ss_pred HH-HHHHHHHHHH--hC--CCHHHHHHHHHHHHHHHHHHHhcCchh----hhccCCHHHHHHHHHHHHcCCH
Confidence 10 00 0011111 11 224567788888888888777432111 0113555666666666666633
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=270.96 Aligned_cols=308 Identities=20% Similarity=0.243 Sum_probs=215.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|.+++||++ |+++|||+|+.+ .|.+.+++++++|.+ .|+||+..|||+ |++. |+.++|..+ .
T Consensus 4 ~al~~k~rP~~-f~~viGq~~v~~---~L~~~i~~~~~~hay-Lf~Gp~GtGKTt~Ak~l-------Akal~c~~~--~- 68 (559)
T PRK05563 4 QALYRKWRPQT-FEDVVGQEHITK---TLKNAIKQGKISHAY-LFSGPRGTGKTSAAKIF-------AKAVNCLNP--P- 68 (559)
T ss_pred HHHHHHhCCCc-HHhccCcHHHHH---HHHHHHHcCCCCeEE-EEECCCCCCHHHHHHHH-------HHHhcCCCC--C-
Confidence 34678899999 899999999975 589999999998833 579998558875 6655 344444111 1
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
..-|||.|..|+.+.. +.+++++|.+.++ |+ +++|+.++++. .....+ .++|+||||+
T Consensus 69 -~~~pC~~C~~C~~i~~g~~~dv~eidaas~~--~v------------d~ir~i~~~v~-~~p~~~----~~kViIIDE~ 128 (559)
T PRK05563 69 -DGEPCNECEICKAITNGSLMDVIEIDAASNN--GV------------DEIRDIRDKVK-YAPSEA----KYKVYIIDEV 128 (559)
T ss_pred -CCCCCCccHHHHHHhcCCCCCeEEeeccccC--CH------------HHHHHHHHHHh-hCcccC----CeEEEEEECc
Confidence 2236666667776654 6889999987543 23 78888776643 222233 4699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|||+..+||+|+|++|+|+.+ +||++|+. ++++|++++|||+.+.|.+++.+++.+.|+..+
T Consensus 129 ~~Lt~~a~naLLKtLEepp~~~ifIlatt~------------~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 129 HMLSTGAFNALLKTLEEPPAHVIFILATTE------------PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 88888876 789999999999999999999999999988655
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++.+|++.+ +||+|+|+++|+++..++ ...||.++|.++++.. +.....+++. .+..++.
T Consensus 197 ~i~~~al~~ia~~s-~G~~R~al~~Ldq~~~~~----~~~It~~~V~~vlg~~-~~~~i~~l~~---------al~~~d~ 261 (559)
T PRK05563 197 EYEDEALRLIARAA-EGGMRDALSILDQAISFG----DGKVTYEDALEVTGSV-SQEALDDLVD---------AIVEGDV 261 (559)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHhCCC-CHHHHHHHHH---------HHHccCH
Confidence 8999999999999 999999999999986553 3479999999887532 1111111111 1111111
Q ss_pred CCcccc-cccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHH
Q psy1686 338 GDTKME-VDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWR 407 (448)
Q Consensus 338 ~~~~lE-~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i 407 (448)
.. .+. .+++....+ ....++..+..|-+|++..+..+... ...++++..+.+.+..+.|=
T Consensus 262 ~~-al~~l~~l~~~g~----d~~~~l~~L~~~~Rdll~~k~~~~~~-----~~~~~~~~~~~~~~~a~~~s 322 (559)
T PRK05563 262 AK-ALKILEELLDEGK----DPNRFIEDLIYYLRDLLLVKTSPELE-----ILDESTENDELFKELSEKLD 322 (559)
T ss_pred HH-HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHhhcCccc-----ccccCHHHHHHHHHHHHhCC
Confidence 00 000 011111111 23467778888888888776442211 12456666666666666663
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=267.28 Aligned_cols=229 Identities=23% Similarity=0.305 Sum_probs=182.0
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++|++++||++ |+++|||+|+.+ .|.+++++|+++| ..+|+||+..|||| |++.+. .+.|. ..
T Consensus 4 ~~La~KyRP~~-f~diiGq~~~v~---~L~~~i~~~rl~h-a~Lf~Gp~GvGKTTlAr~lAk-------~L~c~----~~ 67 (546)
T PRK14957 4 QALARKYRPQS-FAEVAGQQHALN---SLVHALETQKVHH-AYLFTGTRGVGKTTLGRLLAK-------CLNCK----TG 67 (546)
T ss_pred hhHHHHHCcCc-HHHhcCcHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHH-------HhCCC----CC
Confidence 57899999998 899999999985 4899999999987 34689998558876 665533 23320 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+.+ +.+++++|.++.. |+ +++|+.++.. ......|+ ++|+||||+
T Consensus 68 ~~~~pCg~C~sC~~i~~~~~~dlieidaas~~--gv------------d~ir~ii~~~-~~~p~~g~----~kViIIDEa 128 (546)
T PRK14957 68 VTAEPCNKCENCVAINNNSFIDLIEIDAASRT--GV------------EETKEILDNI-QYMPSQGR----YKVYLIDEV 128 (546)
T ss_pred CCCCCCcccHHHHHHhcCCCCceEEeeccccc--CH------------HHHHHHHHHH-HhhhhcCC----cEEEEEech
Confidence 12235677777777665 6889999876542 33 7888877654 33334443 589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.++|++|+|++|+++.+ +||++|+. ++++|++++|||++|+|+|++.++|.+.|+..+
T Consensus 129 ~~ls~~a~naLLK~LEepp~~v~fIL~Ttd------------~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 129 HMLSKQSFNALLKTLEEPPEYVKFILATTD------------YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred hhccHHHHHHHHHHHhcCCCCceEEEEECC------------hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877 68888877 899999999999999999999999998888543
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+.+..++ ++.|+.++|+++++
T Consensus 197 ~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~----~~~It~~~V~~~l~ 242 (546)
T PRK14957 197 NSDEQSLEYIAYHA-KGSLRDALSLLDQAISFC----GGELKQAQIKQMLG 242 (546)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 9999999999999 999999999999987653 25799999998654
|
|
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-30 Score=255.43 Aligned_cols=101 Identities=59% Similarity=0.904 Sum_probs=99.0
Q ss_pred ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeechhh---
Q psy1686 343 EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNRVKL--- 419 (448)
Q Consensus 343 E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~~~~--- 419 (448)
...+||+||+|+++|+||.+|++||||+|+.|+|.||+++||+|+++||.+|+|+|||++|.+|.++||||+|||||
T Consensus 216 ~~tkfVqCPeGElqkrkevvhtvsLHeIDViNSrtqG~lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFID 295 (454)
T KOG2680|consen 216 SQTKFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFID 295 (454)
T ss_pred CccceecCCchhhhheeeeeEeeeecccccccccccceEEEEeCCcccccHHHHHHHHHHHHHHHhcCCeeeccceEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------hhhhhhhhhccCceeEEecccccc
Q psy1686 420 ---------TMFLRGLIEGTVTAKTLSSPNKLL 443 (448)
Q Consensus 420 ---------~~~l~~~~e~~~~~~~~~~~n~~~ 443 (448)
||||||++|...+|+++||||||.
T Consensus 296 EvHMLDIEcFsFlNrAlE~d~~PiiimaTNrgi 328 (454)
T KOG2680|consen 296 EVHMLDIECFSFLNRALENDMAPIIIMATNRGI 328 (454)
T ss_pred eehhhhhHHHHHHHHHhhhccCcEEEEEcCCce
Confidence 999999999999999999999986
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=243.67 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=139.3
Q ss_pred cCCCCCCCCCccccccccccchhhhhhhHHHHHHHhc--CCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE--EVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~--~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
..-+|++++||++ +++||||+|+.+..+++.++.+. +.+.| +++||||..|||| |+|+++ +++.
T Consensus 10 ~~~~l~~~lRP~~-L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h--~lf~GPPG~GKTTLA~IIA~-------e~~~--- 76 (233)
T PF05496_consen 10 EEAPLAERLRPKS-LDEFIGQEHLKGNLKILIRAAKKRGEALDH--MLFYGPPGLGKTTLARIIAN-------ELGV--- 76 (233)
T ss_dssp --S-HHHHTS-SS-CCCS-S-HHHHHHHHHHHHHHHCTTS---E--EEEESSTTSSHHHHHHHHHH-------HCT----
T ss_pred cchhhHHhcCCCC-HHHccCcHHHHhhhHHHHHHHHhcCCCcce--EEEECCCccchhHHHHHHHh-------ccCC---
Confidence 4567899999998 89999999999999999998865 34667 9999999549987 887643 3332
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
+|.. ++ |..-+=..|+...+.. +.. .+|||||
T Consensus 77 ---~~~~------------------------------~s----g~~i~k~~dl~~il~~-----l~~------~~ILFID 108 (233)
T PF05496_consen 77 ---NFKI------------------------------TS----GPAIEKAGDLAAILTN-----LKE------GDILFID 108 (233)
T ss_dssp ----EEE------------------------------EE----CCC--SCHHHHHHHHT-------T------T-EEEEC
T ss_pred ---CeEe------------------------------cc----chhhhhHHHHHHHHHh-----cCC------CcEEEEe
Confidence 3433 11 1101111455443322 122 4899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCCCeEEEEecC---------ceeEeeccccCCCCCCChhhhhhcccc-cCCCCCHHHHHH
Q psy1686 183 EVHMLDIECFSFLNRALESEMSPVVITATNR---------GVTKIRGTAYSSPHGIPIDLLDRMVII-PTQPYQDEEIQA 252 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~---------~i~lI~~Ttenp~~~Ip~~lLSR~~ii-~~~pys~~eI~~ 252 (448)
|||||++.+|++|+.++|+....++|.++.. ..++|||||.. ..++.+|++|+.++ ++..|+.+|+.+
T Consensus 109 EIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~--g~ls~pLrdRFgi~~~l~~Y~~~el~~ 186 (233)
T PF05496_consen 109 EIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA--GLLSSPLRDRFGIVLRLEFYSEEELAK 186 (233)
T ss_dssp TCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG--CCTSHCCCTTSSEEEE----THHHHHH
T ss_pred chhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc--cccchhHHhhcceecchhcCCHHHHHH
Confidence 9999999999999999999765555543322 25999999964 56899999999865 899999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
|+++.+ +++++...||+.| +|++|.|+++|+++.++|
T Consensus 187 Iv~r~a~~l~i~i~~~~~~~Ia~rs-rGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 187 IVKRSARILNIEIDEDAAEEIARRS-RGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp HHHHCCHCTT-EE-HHHHHHHHHCT-TTSHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Confidence 999655 9999999999999 999999999999987766
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=250.17 Aligned_cols=229 Identities=21% Similarity=0.217 Sum_probs=179.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+|+.+. |.++++.|+++|+ ..++||+..|||| |++. |+.+.| ...
T Consensus 4 ~~l~~kyrP~~-~~~iiGq~~~~~~---l~~~~~~~~~~h~-~L~~Gp~G~GKTtla~~l-------a~~l~c----~~~ 67 (363)
T PRK14961 4 QILARKWRPQY-FRDIIGQKHIVTA---ISNGLSLGRIHHA-WLLSGTRGVGKTTIARLL-------AKSLNC----QNG 67 (363)
T ss_pred HHHHHHhCCCc-hhhccChHHHHHH---HHHHHHcCCCCeE-EEEecCCCCCHHHHHHHH-------HHHhcC----CCC
Confidence 46889999998 8999999999864 8999999999983 2689998558876 6654 233333 123
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+.+-|||.|..|+++.+ +.+++++|.++.. ++ +++|+.++... .....+ .++|+||||+
T Consensus 68 ~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~--~v------------~~ir~i~~~~~-~~p~~~----~~kviIIDEa 128 (363)
T PRK14961 68 ITSNPCRKCIICKEIEKGLCLDLIEIDAASRT--KV------------EEMREILDNIY-YSPSKS----RFKVYLIDEV 128 (363)
T ss_pred CCCCCCCCCHHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHHh-cCcccC----CceEEEEECh
Confidence 44457777777777766 5788888865421 12 67776665432 111222 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+++.+++++|+|++|+++.+ .||++|+. +.+++++++|||++++|+|++.+++.++|+.++
T Consensus 129 ~~l~~~a~naLLk~lEe~~~~~~fIl~t~~------------~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 129 HMLSRHSFNALLKTLEEPPQHIKFILATTD------------VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred hhcCHHHHHHHHHHHhcCCCCeEEEEEcCC------------hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998877 57777765 567999999999999999999999999988655
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|+++|+.+..+ +...|+.++|.++++
T Consensus 197 ~i~~~al~~ia~~s-~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 197 DTDEYALKLIAYHA-HGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 9999999999999 99999999999988644 345799999998775
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=271.48 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=183.5
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+.|.+++||++ |+++|||+++.+ .|.+++++|+++|. .+|+||+..|||| ++|. |+.++|.. .
T Consensus 3 ~~l~~KyRP~~-f~eiiGqe~v~~---~L~~~i~~~ri~Ha-~Lf~Gp~G~GKTt~A~~l-------Ar~L~C~~----~ 66 (824)
T PRK07764 3 LALYRRYRPAT-FAEVIGQEHVTE---PLSTALDSGRINHA-YLFSGPRGCGKTSSARIL-------ARSLNCVE----G 66 (824)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHhCCCCce-EEEECCCCCCHHHHHHHH-------HHHhCccc----C
Confidence 45778999999 899999999975 49999999999982 3688998448865 7766 45555511 2
Q ss_pred ccccCCCcccceeeeee----ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 107 DLRCPDGELQKRKTVVH----TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~----~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
...-|||+|..|+.+.. ++++++||.++++ |+ +++|+.+..+.. ...++ .++|||||
T Consensus 67 ~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~--~V------------d~iR~l~~~~~~-~p~~~----~~KV~IID 127 (824)
T PRK07764 67 PTSTPCGECDSCVALAPGGPGSLDVTEIDAASHG--GV------------DDARELRERAFF-APAES----RYKIFIID 127 (824)
T ss_pred CCCCCCcccHHHHHHHcCCCCCCcEEEecccccC--CH------------HHHHHHHHHHHh-chhcC----CceEEEEe
Confidence 23347788888887763 4788888876653 23 888886654422 12223 46999999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc---
Q psy1686 183 EVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--- 258 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--- 258 (448)
|+|||+.++||+|+|++|+++.+ +|||+|+. +.+|+++|+|||++|+|++++.++|.+.|+..+
T Consensus 128 Ead~lt~~a~NaLLK~LEEpP~~~~fIl~tt~------------~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 128 EAHMVTPQGFNALLKIVEEPPEHLKFIFATTE------------PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred chhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999887 88888876 678999999999999999999999998888654
Q ss_pred ---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 ---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 ---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|.++++|+++..++ +...||.++|..+++.
T Consensus 196 Gv~id~eal~lLa~~s-gGdlR~Al~eLEKLia~~---~~~~IT~e~V~allg~ 245 (824)
T PRK07764 196 GVPVEPGVLPLVIRAG-GGSVRDSLSVLDQLLAGA---GPEGVTYERAVALLGV 245 (824)
T ss_pred CCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc---CCCCCCHHHHHHHhcC
Confidence 8999999999999 999999999999976443 3456999999988753
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=264.75 Aligned_cols=230 Identities=23% Similarity=0.307 Sum_probs=182.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|++++||++ |+++|||+++.+ .|++++++|++++. .+|+||+..|||| |++. |+.++|. ..
T Consensus 4 ~vLarKYRP~t-FddIIGQe~vv~---~L~~ai~~~rl~Ha-~Lf~GP~GvGKTTlAriL-------Ak~LnC~----~~ 67 (709)
T PRK08691 4 QVLARKWRPKT-FADLVGQEHVVK---ALQNALDEGRLHHA-YLLTGTRGVGKTTIARIL-------AKSLNCE----NA 67 (709)
T ss_pred hhHHHHhCCCC-HHHHcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCcHHHHHHHH-------HHHhccc----CC
Confidence 45788999999 899999999985 58999999999872 3689998448875 6655 3444441 12
Q ss_pred ccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||+|..|+.+ ..+++++|+|.++.+ |+ ++||+.++.+ ......|+ ++|+||||+
T Consensus 68 ~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~--gV------------d~IRelle~a-~~~P~~gk----~KVIIIDEa 128 (709)
T PRK08691 68 QHGEPCGVCQSCTQIDAGRYVDLLEIDAASNT--GI------------DNIREVLENA-QYAPTAGK----YKVYIIDEV 128 (709)
T ss_pred CCCCCCcccHHHHHHhccCccceEEEeccccC--CH------------HHHHHHHHHH-HhhhhhCC----cEEEEEECc
Confidence 233455555555554 447899999976543 22 7899887654 22223343 589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+..+|++|+|.+|+++.+ +||++|+. ++++|.+++|||+.|+|++++.++|.+.|+.++
T Consensus 129 d~Ls~~A~NALLKtLEEPp~~v~fILaTtd------------~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 129 HMLSKSAFNAMLKTLEEPPEHVKFILATTD------------PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred cccCHHHHHHHHHHHHhCCCCcEEEEEeCC------------ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998876 78888877 788999999999999999999999999888655
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +...|+.++|..+++.
T Consensus 197 ~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 197 AYEPPALQLLGRAA-AGSMRDALSLLDQAIAL----GSGKVAENDVRQMIGA 243 (709)
T ss_pred CcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 9999999999999 99999999999998654 3457999999998764
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=259.68 Aligned_cols=229 Identities=21% Similarity=0.254 Sum_probs=179.5
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|++++||++ |+++|||+|+.+ .|.+++.+++++|. .+|+||+..|||| |++.+ +.++|.. .
T Consensus 4 ~~l~~k~rP~~-f~divGq~~v~~---~L~~~i~~~~~~ha-~Lf~Gp~G~GKTt~A~~lA-------k~l~c~~----~ 67 (527)
T PRK14969 4 QVLARKWRPKS-FSELVGQEHVVR---ALTNALEQQRLHHA-YLFTGTRGVGKTTLARILA-------KSLNCET----G 67 (527)
T ss_pred HHHHHHhCCCc-HHHhcCcHHHHH---HHHHHHHcCCCCEE-EEEECCCCCCHHHHHHHHH-------HHhcCCC----C
Confidence 35788999998 899999999986 48999999999982 2689998558876 66553 3343311 1
Q ss_pred ccccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||+|..|+++. .+++++++|.+++. |+ +++|+.++.+. .....| .++|+||||+
T Consensus 68 ~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~--~v------------d~ir~l~~~~~-~~p~~~----~~kVvIIDEa 128 (527)
T PRK14969 68 VTATPCGVCSACLEIDSGRFVDLIEVDAASNT--QV------------DAMRELLDNAQ-YAPTRG----RFKVYIIDEV 128 (527)
T ss_pred CCCCCCCCCHHHHHHhcCCCCceeEeeccccC--CH------------HHHHHHHHHHh-hCcccC----CceEEEEcCc
Confidence 1123556665555544 47889999876532 23 88998776542 222233 4689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++|+|+|++|+++.+ +||++|+. +.++|++++|||++|+|++++.+++.+.|...+
T Consensus 129 d~ls~~a~naLLK~LEepp~~~~fIL~t~d------------~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 129 HMLSKSAFNAMLKTLEEPPEHVKFILATTD------------PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred ccCCHHHHHHHHHHHhCCCCCEEEEEEeCC------------hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998877 68888876 778999999999999999999999988777543
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+++..+ +...|+.++|+++.+
T Consensus 197 ~~~~~al~~la~~s-~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 197 PFDATALQLLARAA-AGSMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 8999999999999 99999999999998654 345799999998875
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=258.68 Aligned_cols=311 Identities=17% Similarity=0.220 Sum_probs=214.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+|++++||++ |+++|||+++. ..|.+++++|++++ -.+|+|||..|||+ |++.+ +.+.|.. .
T Consensus 4 ~~la~KyRP~s-f~dIiGQe~v~---~~L~~ai~~~ri~h-a~Lf~GPpG~GKTtiArilA-------k~L~C~~----~ 67 (624)
T PRK14959 4 ASLTARYRPQT-FAEVAGQETVK---AILSRAAQENRVAP-AYLFSGTRGVGKTTIARIFA-------KALNCET----A 67 (624)
T ss_pred chHHHHhCCCC-HHHhcCCHHHH---HHHHHHHHcCCCCc-eEEEECCCCCCHHHHHHHHH-------HhccccC----C
Confidence 58899999999 89999999995 67999999999876 35689999558875 77653 3344311 1
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+.+ +.++++||.+.++ |+ +++|+.+ +.+.....++ .++|+||||+
T Consensus 68 ~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~--~I------------d~iR~L~-~~~~~~p~~g----~~kVIIIDEa 128 (624)
T PRK14959 68 PTGEPCNTCEQCRKVTQGMHVDVVEIDGASNR--GI------------DDAKRLK-EAIGYAPMEG----RYKVFIIDEA 128 (624)
T ss_pred CCCCCCcccHHHHHHhcCCCCceEEEeccccc--CH------------HHHHHHH-HHHHhhhhcC----CceEEEEECh
Confidence 12224555555555544 6788899765332 22 7787643 3333333344 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++|+|+|++|+++.. +||++|+. +++++.+|+|||++|+|++|+.+++.++|+..+
T Consensus 129 d~Lt~~a~naLLk~LEEP~~~~ifILaTt~------------~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 129 HMLTREAFNALLKTLEEPPARVTFVLATTE------------PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred HhCCHHHHHHHHHHhhccCCCEEEEEecCC------------hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 67787776 778999999999999999999999999888533
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCC
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGA 337 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~ 337 (448)
++++++++|++.+ +||+|+|+++|+.+. + .+...|+.++|++++... +.....++++.. . .++.
T Consensus 197 ~id~eal~lIA~~s-~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~lg~~-~~e~vfeLl~AL----~-----~~D~ 261 (624)
T PRK14959 197 DYDPAAVRLIARRA-AGSVRDSMSLLGQVL--A--LGESRLTIDGARGVLGLA-GQELFLRLMEAL----A-----AQDC 261 (624)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhCCC-CHHHHHHHHHHH----h-----cCCH
Confidence 9999999999999 999999999999774 2 244579999999888642 333232333210 0 0110
Q ss_pred CCccc-ccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 338 GDTKM-EVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 338 ~~~~l-E~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.. .+ -...+.+ .|+ ....++..+..+.+|++..+..+...+ ....++++.++++....++|=.
T Consensus 262 ~a-al~~l~~Ll~--~g~--d~~~iL~~Ll~~~RdLLl~k~~~~~~~---~~l~i~~~~~~~~~~~A~~~s~ 325 (624)
T PRK14959 262 LG-VANVVRELLD--RGV--DMGFFLRELVATWRNLFMLRQAGEAAL---ASLDLPEDEARQWLGWAKRFEP 325 (624)
T ss_pred HH-HHHHHHHHHH--cCC--CHHHHHHHHHHHHHHHHHhhhccccch---hhcccCHHHHHHHHHHHHhCCH
Confidence 00 00 0011111 121 245667888889999988764432211 1235677877777777777643
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=253.93 Aligned_cols=228 Identities=21% Similarity=0.275 Sum_probs=177.0
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ |+++|||+++. ..|.+++++|+++|. ..++|||..|||+ +++.+. .+.|. ....+
T Consensus 3 ~l~~KyRP~~-fdeiiGqe~v~---~~L~~~I~~grl~ha-yLf~Gp~G~GKTt~Ar~LAk-------~L~c~--~~~~~ 68 (535)
T PRK08451 3 ALALKYRPKH-FDELIGQESVS---KTLSLALDNNRLAHA-YLFSGLRGSGKTSSARIFAR-------ALVCE--QGPSS 68 (535)
T ss_pred cHHHHHCCCC-HHHccCcHHHH---HHHHHHHHcCCCCee-EEEECCCCCcHHHHHHHHHH-------HhcCC--CCCCC
Confidence 5788999998 89999999996 458999999999882 2689999558875 554422 22220 11123
Q ss_pred cccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||.|..|+.+ ..+.+++++|.++.+ |+ ++||+.+.... .....+ .++|++|||+|
T Consensus 69 ~--pC~~C~~C~~~~~~~h~dv~eldaas~~--gI------------d~IRelie~~~-~~P~~~----~~KVvIIDEad 127 (535)
T PRK08451 69 T--PCDTCIQCQSALENRHIDIIEMDAASNR--GI------------DDIRELIEQTK-YKPSMA----RFKIFIIDEVH 127 (535)
T ss_pred C--CCcccHHHHHHhhcCCCeEEEecccccc--CH------------HHHHHHHHHHh-hCcccC----CeEEEEEECcc
Confidence 3 45555555544 447788888876554 33 88998886531 111223 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.++|++|+|++|+|+.+ +||++|+. ++++|++++|||++|+|+|++.+++.+.|..++
T Consensus 128 ~Lt~~A~NALLK~LEEpp~~t~FIL~ttd------------~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 128 MLTKEAFNALLKTLEEPPSYVKFILATTD------------PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred cCCHHHHHHHHHHHhhcCCceEEEEEECC------------hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999876 78888876 789999999999999999999999988887555
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+++..++ ...||.++|.++++
T Consensus 196 i~~~Al~~Ia~~s-~GdlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 196 YEPEALEILARSG-NGSLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred CCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 8999999999999 999999999999987664 34688888887754
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=254.32 Aligned_cols=233 Identities=20% Similarity=0.220 Sum_probs=181.0
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC-
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT- 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~- 105 (448)
.+|++..||++ |+++|||+++++. |.+++++|++++. .+|+||+..|||| |++.++. +.|......
T Consensus 12 ~~la~KyRP~~-f~dliGq~~~v~~---L~~~~~~gri~ha-~L~~Gp~GvGKTt~Ar~lAk~-------L~c~~~~~~~ 79 (598)
T PRK09111 12 RVLARKYRPQT-FDDLIGQEAMVRT---LTNAFETGRIAQA-FMLTGVRGVGKTTTARILARA-------LNYEGPDGDG 79 (598)
T ss_pred hhHHhhhCCCC-HHHhcCcHHHHHH---HHHHHHcCCCCce-EEEECCCCCCHHHHHHHHHHh-------hCcCCccccC
Confidence 46889999998 8999999999854 9999999999973 4689998558875 7766433 333100000
Q ss_pred CccccCCCcccceee--eeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKT--VVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~ke--i~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
.....|||.|..|+. ...+++++++|.++.. |+ ++||+.++.+ ......+ .++|+||||
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~--gv------------d~IReIie~~-~~~P~~a----~~KVvIIDE 140 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHT--GV------------DDIREIIESV-RYRPVSA----RYKVYIIDE 140 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHH-HhchhcC----CcEEEEEEC
Confidence 111234555555544 4558999999987542 33 8999877654 3332333 358999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
+|+|+.+++|+|+|++|+|+.+ +||++|+. +.+++++++|||++|.|++++.+++.+.|+..+
T Consensus 141 ad~Ls~~a~naLLKtLEePp~~~~fIl~tte------------~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 141 VHMLSTAAFNALLKTLEEPPPHVKFIFATTE------------IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred hHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC------------hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999887 78888876 667999999999999999999999999888654
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+++..+ +.+.||.++|+.+++
T Consensus 209 i~i~~eAl~lIa~~a-~Gdlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 209 VEVEDEALALIARAA-EGSVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 9999999999999 99999999999987654 234799999998875
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=251.04 Aligned_cols=228 Identities=22% Similarity=0.301 Sum_probs=174.4
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ ++++|||+|+. ..|++++.+|++++. ++++|||..|||| |++.++ .++|. ....+
T Consensus 3 ~l~~kyRP~~-~~divGq~~i~---~~L~~~i~~~~l~~~-~Lf~GPpGtGKTTlA~~lA~-------~l~~~--~~~~~ 68 (472)
T PRK14962 3 ALYRKYRPKT-FSEVVGQDHVK---KLIINALKKNSISHA-YIFAGPRGTGKTTVARILAK-------SLNCE--NRKGV 68 (472)
T ss_pred hhHHHHCCCC-HHHccCcHHHH---HHHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHHHH-------Hhccc--cCCCC
Confidence 3678999999 89999999995 569999999999762 4789999558876 776533 33330 11224
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||.|..|+.+.. ..+++++|++.++ |+ +++|+..+.+ ......+ .++|+||||+|
T Consensus 69 ~--pc~~c~~c~~i~~g~~~dv~el~aa~~~--gi------------d~iR~i~~~~-~~~p~~~----~~kVvIIDE~h 127 (472)
T PRK14962 69 E--PCNECRACRSIDEGTFMDVIELDAASNR--GI------------DEIRKIRDAV-GYRPMEG----KYKVYIIDEVH 127 (472)
T ss_pred C--CCcccHHHHHHhcCCCCccEEEeCcccC--CH------------HHHHHHHHHH-hhChhcC----CeEEEEEEChH
Confidence 4 4555555555544 5677888776443 22 7888655443 2222233 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.++|++|++++|+++.. +||++|+. +.+++++++|||.++.|+|++.+++..+|+.++
T Consensus 128 ~Lt~~a~~~LLk~LE~p~~~vv~Ilattn------------~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 128 MLTKEAFNALLKTLEEPPSHVVFVLATTN------------LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred HhHHHHHHHHHHHHHhCCCcEEEEEEeCC------------hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998765 55566654 568999999999999999999999999998655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++|+++|++.+ +||+|+|+|.|+.+..++ ...||.++|+++++
T Consensus 196 i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~----~~~It~e~V~~~l~ 240 (472)
T PRK14962 196 IDREALSFIAKRA-SGGLRDALTMLEQVWKFS----EGKITLETVHEALG 240 (472)
T ss_pred CCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 9999999999999 999999999999876543 22499999998875
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=257.59 Aligned_cols=228 Identities=23% Similarity=0.359 Sum_probs=177.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++|+++.||+. |+++|||+++.+ .|+++|++|+++|. ..++|||+.|||+ |++.+. .+.| +...
T Consensus 6 ~~l~~KyRP~~-f~dIiGQe~~v~---~L~~aI~~~rl~HA-YLF~GP~GtGKTt~AriLAk-------~LnC---~~~~ 70 (725)
T PRK07133 6 KALYRKYRPKT-FDDIVGQDHIVQ---TLKNIIKSNKISHA-YLFSGPRGTGKTSVAKIFAN-------ALNC---SHKT 70 (725)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCcHHHHHHHHHH-------Hhcc---cccC
Confidence 56788999999 899999999975 59999999999983 2689999558875 776633 3333 1111
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
...-|||.|..| ...+++++++|.+++. |+ +++|+.+..+ ......| .++|++|||+|+
T Consensus 71 ~~~~pC~~C~~~--~~~~~Dvieidaasn~--~v------------d~IReLie~~-~~~P~~g----~~KV~IIDEa~~ 129 (725)
T PRK07133 71 DLLEPCQECIEN--VNNSLDIIEMDAASNN--GV------------DEIRELIENV-KNLPTQS----KYKIYIIDEVHM 129 (725)
T ss_pred CCCCchhHHHHh--hcCCCcEEEEeccccC--CH------------HHHHHHHHHH-HhchhcC----CCEEEEEEChhh
Confidence 122255666554 3456777888775432 22 7788877654 3333344 368999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
|+.+++++|+|++|+|+.+ +||++|+. ++++|++++|||++++|+|++.+++.+.|..++ +
T Consensus 130 LT~~A~NALLKtLEEPP~~tifILaTte------------~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i 197 (725)
T PRK07133 130 LSKSAFNALLKTLEEPPKHVIFILATTE------------VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY 197 (725)
T ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCC------------hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999877 77888876 789999999999999999999999999887544 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++.+|++.+ +||+|.|+++|+.+..++ ...|+.++|+++++
T Consensus 198 d~eAl~~LA~lS-~GslR~AlslLekl~~y~----~~~It~e~V~ellg 241 (725)
T PRK07133 198 EKNALKLIAKLS-SGSLRDALSIAEQVSIFG----NNKITLKNVEELFG 241 (725)
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 999999999999 999999999999886553 23599999988654
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=249.79 Aligned_cols=229 Identities=21% Similarity=0.269 Sum_probs=177.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..+++++||++ |+++|||+++++ .|.+++++|+++|. .+++||++.|||| |++.+ +.+.|.. .
T Consensus 4 ~~~~~KyRP~~-F~dIIGQe~iv~---~L~~aI~~~rl~hA-~Lf~GP~GvGKTTlA~~lA-------k~L~C~~----~ 67 (605)
T PRK05896 4 ITFYRKYRPHN-FKQIIGQELIKK---ILVNAILNNKLTHA-YIFSGPRGIGKTSIAKIFA-------KAINCLN----P 67 (605)
T ss_pred hhHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCce-EEEECCCCCCHHHHHHHHH-------HHhcCCC----C
Confidence 36788999999 899999999974 58999999999862 4589999558876 66552 3333311 1
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
...-|||.|..|+.+.. +.+++++|.++.. |+ +++|+.++... .....+ .++|++|||+
T Consensus 68 ~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~i--gV------------d~IReIi~~~~-~~P~~~----~~KVIIIDEa 128 (605)
T PRK05896 68 KDGDCCNSCSVCESINTNQSVDIVELDAASNN--GV------------DEIRNIIDNIN-YLPTTF----KYKVYIIDEA 128 (605)
T ss_pred CCCCCCcccHHHHHHHcCCCCceEEecccccc--CH------------HHHHHHHHHHH-hchhhC----CcEEEEEech
Confidence 11235566655555544 6888899876432 23 78988776543 222233 3589999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++++|++++|+|+.+ +||++|+. +++++++++|||++++|.|++.+++...|+.++
T Consensus 129 d~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~------------~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi 196 (605)
T PRK05896 129 HMLSTSAWNALLKTLEEPPKHVVFIFATTE------------FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI 196 (605)
T ss_pred HhCCHHHHHHHHHHHHhCCCcEEEEEECCC------------hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999865 77788876 789999999999999999999999998888644
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+++|+.+..++ + ..|+.++|..+.+
T Consensus 197 ~Is~eal~~La~lS-~GdlR~AlnlLekL~~y~---~-~~It~e~V~ellg 242 (605)
T PRK05896 197 KIEDNAIDKIADLA-DGSLRDGLSILDQLSTFK---N-SEIDIEDINKTFG 242 (605)
T ss_pred CCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhc
Confidence 9999999999999 999999999999976553 2 3499999988754
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-27 Score=251.82 Aligned_cols=229 Identities=21% Similarity=0.212 Sum_probs=179.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
..|+.++||+. |+++|||+|+.+. |.++|++|+++| ..+|+|||..|||+ |++. |+.+.|. ..
T Consensus 4 ~~l~~kyRP~~-f~diiGqe~iv~~---L~~~i~~~~i~h-ayLf~Gp~G~GKTt~Ar~l-------Ak~L~c~----~~ 67 (563)
T PRK06647 4 RGTATKRRPRD-FNSLEGQDFVVET---LKHSIESNKIAN-AYIFSGPRGVGKTSSARAF-------ARCLNCV----NG 67 (563)
T ss_pred HHHHHHhCCCC-HHHccCcHHHHHH---HHHHHHcCCCCe-EEEEECCCCCCHHHHHHHH-------HHhhccc----cC
Confidence 45788999999 8999999999864 999999999987 34689999558875 6655 3334431 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
....|||+|..|+++.. +.+++++|.+.+. |+ +++|+.+..+ ......+ .++|+||||+
T Consensus 68 ~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~--~v------------ddIr~l~e~~-~~~p~~~----~~KVvIIDEa 128 (563)
T PRK06647 68 PTPMPCGECSSCKSIDNDNSLDVIEIDGASNT--SV------------QDVRQIKEEI-MFPPASS----RYRVYIIDEV 128 (563)
T ss_pred CCCCCCccchHHHHHHcCCCCCeEEecCcccC--CH------------HHHHHHHHHH-HhchhcC----CCEEEEEECh
Confidence 22347788888877665 4666777654321 22 7888766544 2233334 3689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.+++|+|+|++|+|+.+ +||++|+. +.+++++|+|||+++.|++++.+++.+.|+..+
T Consensus 129 ~~Ls~~a~naLLK~LEepp~~~vfI~~tte------------~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 129 HMLSNSAFNALLKTIEEPPPYIVFIFATTE------------VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred hhcCHHHHHHHHHhhccCCCCEEEEEecCC------------hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998876 77777776 688999999999999999999999999988654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|.|+++|+++..++ ...||.++|+++++
T Consensus 197 ~id~eAl~lLa~~s-~GdlR~alslLdklis~~----~~~It~e~V~~llg 242 (563)
T PRK06647 197 KYEDEALKWIAYKS-TGSVRDAYTLFDQVVSFS----DSDITLEQIRSKMG 242 (563)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 8999999999999 999999999999886553 34699999998764
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=245.16 Aligned_cols=229 Identities=21% Similarity=0.258 Sum_probs=179.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+++..||++ |+++|||+++.+ .|.++|++|+++|.+ .|+|||..|||| |++.+.. .+|..+ ..
T Consensus 4 ~~~~~kyRP~~-f~diiGq~~i~~---~L~~~i~~~~i~hay-Lf~Gp~G~GKTtlAr~lAk~-------L~c~~~--~~ 69 (486)
T PRK14953 4 IPFARKYRPKF-FKEVIGQEIVVR---ILKNAVKLQRVSHAY-IFAGPRGTGKTTIARILAKV-------LNCLNP--QE 69 (486)
T ss_pred hHHHHhhCCCc-HHHccChHHHHH---HHHHHHHcCCCCeEE-EEECCCCCCHHHHHHHHHHH-------hcCcCC--CC
Confidence 47888999998 899999999975 589999999999832 579999558875 6655332 332111 11
Q ss_pred ccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.. |||.|..|..+.. +++++++|.++++ |+ +++|+.++.+ ......| .++|+||||+
T Consensus 70 ~~--pc~~c~nc~~i~~g~~~d~~eidaas~~--gv------------d~ir~I~~~~-~~~P~~~----~~KVvIIDEa 128 (486)
T PRK14953 70 GE--PCGKCENCVEIDKGSFPDLIEIDAASNR--GI------------DDIRALRDAV-SYTPIKG----KYKVYIIDEA 128 (486)
T ss_pred CC--CCCccHHHHHHhcCCCCcEEEEeCccCC--CH------------HHHHHHHHHH-HhCcccC----CeeEEEEECh
Confidence 12 5566655555544 7889999887654 33 7788755443 3333344 3699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.++|++|++++|+|+.. +||++|+. +++++++++|||+++.|+|++.+++...|..++
T Consensus 129 d~Lt~~a~naLLk~LEepp~~~v~Il~tt~------------~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 129 HMLTKEAFNALLKTLEEPPPRTIFILCTTE------------YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred hhcCHHHHHHHHHHHhcCCCCeEEEEEECC------------HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 88888876 778999999999999999999999999988765
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|+++|+.+..++ ...||.++|+++.+
T Consensus 197 ~id~~al~~La~~s-~G~lr~al~~Ldkl~~~~----~~~It~~~V~~~lg 242 (486)
T PRK14953 197 EYEEKALDLLAQAS-EGGMRDAASLLDQASTYG----EGKVTIKVVEEFLG 242 (486)
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----CCCcCHHHHHHHhC
Confidence 8999999999999 999999999999987543 44799999998653
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=248.84 Aligned_cols=311 Identities=17% Similarity=0.200 Sum_probs=208.2
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.++++||.+ |+++|||+++.+ .|.++|++|++++. .+|+|||..|||+ |++.+ +.+.|.. ......
T Consensus 7 ~~~kyRP~~-f~~viGq~~~~~---~L~~~i~~~~l~ha-yLf~Gp~G~GKtt~A~~lA-------k~l~c~~-~~~~~~ 73 (614)
T PRK14971 7 SARKYRPST-FESVVGQEALTT---TLKNAIATNKLAHA-YLFCGPRGVGKTTCARIFA-------KTINCQN-LTADGE 73 (614)
T ss_pred HHHHHCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCee-EEEECCCCCCHHHHHHHHH-------HHhCCCC-CCCCCC
Confidence 467899998 899999999975 48999999999883 3589999558875 55542 3333311 011233
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
+|..|+.|+.-....+..+|++|..... ++ +++|+.+..+. .....+ .++|++|||+|+|+
T Consensus 74 ~Cg~C~sC~~~~~~~~~n~~~ld~~~~~--~v------------d~Ir~li~~~~-~~P~~~----~~KVvIIdea~~Ls 134 (614)
T PRK14971 74 ACNECESCVAFNEQRSYNIHELDAASNN--SV------------DDIRNLIEQVR-IPPQIG----KYKIYIIDEVHMLS 134 (614)
T ss_pred CCCcchHHHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHHh-hCcccC----CcEEEEEECcccCC
Confidence 4444444444344446888899875332 12 78998886652 222334 35899999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCH
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQT 261 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~d 261 (448)
.+++++|+|++|+|+.+ +||++|+. .++|.++|+|||++++|++++.+++...|...+ +++
T Consensus 135 ~~a~naLLK~LEepp~~tifIL~tt~------------~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~ 202 (614)
T PRK14971 135 QAAFNAFLKTLEEPPSYAIFILATTE------------KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEP 202 (614)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCC------------chhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999998876 77888876 688999999999999999999999998888544 899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCCCCcc
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAGDTK 341 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~~~~~ 341 (448)
+++++|++.+ +||+|+|+++|+.+..++ +. .|+.++|.+.+.. .+.....++++ .+..++...+-
T Consensus 203 ~al~~La~~s-~gdlr~al~~Lekl~~y~---~~-~It~~~V~~~l~~-~~~~~iF~L~d---------ai~~~~~~~al 267 (614)
T PRK14971 203 EALNVIAQKA-DGGMRDALSIFDQVVSFT---GG-NITYKSVIENLNI-LDYDYYFRLTD---------ALLAGKVSDSL 267 (614)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHhc---cC-CccHHHHHHHhCC-CCHHHHHHHHH---------HHHcCCHHHHH
Confidence 9999999999 999999999999987664 22 3998888776642 12222222111 01011100000
Q ss_pred cccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 342 MEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 342 lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.-...+...-. .-..++..++.|-+|++-.+.... ....++++.+++.+.+.+++|=.
T Consensus 268 ~ll~~Ll~~g~----~~~~iL~~L~~~fRdlL~~K~~~~-----~~ll~v~~~~~~~~~~qa~~~s~ 325 (614)
T PRK14971 268 LLFDEILNKGF----DGSHFITGLASHFRDLLVCKDAAT-----LQLLEVGESIRQRYLEQAQKCPM 325 (614)
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHHHHHHhhcccc-----cccccCCHHHHHHHHHHHHhCCH
Confidence 00011111011 112357778888888888764311 12246677777777666666644
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=245.91 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=179.2
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC-C-
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV-T- 105 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~-~- 105 (448)
.|++++||.+ |+++|||+++.+ .|++++++|+++| ..+|+||+..|||| |++.+ +.+.|..+.. .
T Consensus 5 ~l~~kyRP~~-f~eivGQe~i~~---~L~~~i~~~ri~h-a~Lf~Gp~GvGKttlA~~lA-------k~L~c~~~~~~~~ 72 (620)
T PRK14954 5 VIARKYRPSK-FADITAQEHITH---TIQNSLRMDRVGH-GYIFSGLRGVGKTTAARVFA-------KAVNCQRMIDDPV 72 (620)
T ss_pred HHHHHHCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCe-eEEEECCCCCCHHHHHHHHH-------HHhCCCCcCCccc
Confidence 4678999999 899999999985 4999999999987 24588999558876 66553 3333311000 0
Q ss_pred --CccccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 106 --KDLRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 106 --~fv~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
+-+..|||.|..|+.+ ..+.+++++|..++. |+ ++||+.+..... ....| .++|+||
T Consensus 73 ~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~--~v------------d~Ir~l~e~~~~-~P~~~----~~KVvII 133 (620)
T PRK14954 73 YLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN--SV------------DDIRQLRENVRY-GPQKG----RYRVYII 133 (620)
T ss_pred cccccCCCCccCHHHHHHhccCCCCeEEecccccC--CH------------HHHHHHHHHHHh-hhhcC----CCEEEEE
Confidence 0012466666666655 457777888765432 22 889887655432 22334 3589999
Q ss_pred eccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--
Q psy1686 182 DEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258 (448)
Q Consensus 182 DEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-- 258 (448)
||+|+|+.+++++|+|++|+|+.+ +||++|+. ++++++++.|||++|.|++++.+++...|...+
T Consensus 134 dEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~------------~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 134 DEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE------------LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred eChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC------------hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876 77888776 689999999999999999999999988887543
Q ss_pred ----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh-hhCCCcccHHHHHHHHH
Q psy1686 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR-RRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 ----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~-~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|++.|+.+..++. ...+..|+.++|.+++.
T Consensus 202 egi~I~~eal~~La~~s-~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 202 EGIQIDADALQLIARKA-QGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred cCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 9999999999999 9999999999998877651 12245799999988764
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=231.67 Aligned_cols=316 Identities=17% Similarity=0.201 Sum_probs=209.4
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc-CCC-
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA-DVT- 105 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~-~~~- 105 (448)
.|++++||+. ++++|||+++.+ .|++++++|+++| ..+|+|||..|||| |++.+.. +.|..+ ++.
T Consensus 5 ~l~~k~RP~~-~~eiiGq~~~~~---~L~~~~~~~~~~h-a~lf~Gp~G~GKtt~A~~~a~~-------l~c~~~~~~~~ 72 (397)
T PRK14955 5 VIARKYRPKK-FADITAQEHITR---TIQNSLRMGRVGH-GYIFSGLRGVGKTTAARVFAKA-------VNCQRMIDDAD 72 (397)
T ss_pred HHHHhcCCCc-HhhccChHHHHH---HHHHHHHhCCcce-eEEEECCCCCCHHHHHHHHHHH-------hcCCCCcCccc
Confidence 4788999999 899999999975 6999999999987 24589999558876 6655332 222000 000
Q ss_pred --CccccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 106 --KDLRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 106 --~fv~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
+.+..|||+|..|+.+.+ +.+++++|..... | . ++||+.+.... .....+ .++|+||
T Consensus 73 ~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~--~-------i-----d~Ir~l~~~~~-~~p~~~----~~kvvII 133 (397)
T PRK14955 73 YLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN--S-------V-----DDIRLLRENVR-YGPQKG----RYRVYII 133 (397)
T ss_pred ccccCCCCCCCCHHHHHHhcCCCCCeEeecccccC--C-------H-----HHHHHHHHHHh-hchhcC----CeEEEEE
Confidence 122357788877776665 4444555432211 1 1 78887655442 222333 3589999
Q ss_pred eccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--
Q psy1686 182 DEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-- 258 (448)
Q Consensus 182 DEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-- 258 (448)
||+|+|+.++++.|++.+|+++.. +||++|++ +.++++++.|||.+++|+|++.+++.+.+..++
T Consensus 134 dea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~------------~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 134 DEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE------------LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred eChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC------------hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998766 77777765 678999999999999999999999998888654
Q ss_pred ----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhh-hCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcc
Q psy1686 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRR-RKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTV 333 (448)
Q Consensus 259 ----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~-~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~ 333 (448)
++++++++|++.+ +||+|.|++.|+.+..++.. ..+..|+.++|.+++... +.....+.++. +.
T Consensus 202 ~g~~i~~~al~~l~~~s-~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~-~~~~vf~l~~a---------i~ 270 (397)
T PRK14955 202 EGISVDADALQLIGRKA-QGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLNYI-DDEHFFAVTDA---------VA 270 (397)
T ss_pred cCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHCCC-CHHHHHHHHHH---------HH
Confidence 9999999999999 99999999999988777531 234589999998877432 11222211110 00
Q ss_pred cCCCCCcccc-cccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 334 TGGAGDTKME-VDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 334 ~~~~~~~~lE-~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
.++..+ ++. ...+....+.. .+++.-++.|-+|+...+......+ ...++.+.+.+.+.+++|=.
T Consensus 271 ~~~~~~-al~~~~~l~~~~~~~----~~iL~ll~~~~R~ll~~k~~~~~~~-----~~~~~~~~~~~~~~a~~~s~ 336 (397)
T PRK14955 271 DGDAVA-MLDVAQFVIRNGYDE----QDFLEKLIEHLRNFLVVHNLRSTRL-----VERPDAVRERYERDAAKFSP 336 (397)
T ss_pred cCCHHH-HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhCCH
Confidence 000000 000 01111111111 2467778888888887765321111 13355566677777777754
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=247.95 Aligned_cols=218 Identities=19% Similarity=0.233 Sum_probs=170.8
Q ss_pred CccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 24 HIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 24 Hi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
+-+-.||++++||++ ++++|||+|+.+..+.|+++++++++++ +.++|||..|||| +++.... .+
T Consensus 12 ~~~~~PLaek~RP~t-ldd~vGQe~ii~~~~~L~~~i~~~~~~s--lLL~GPpGtGKTTLA~aIA~~-------~~---- 77 (725)
T PRK13341 12 SQSEAPLADRLRPRT-LEEFVGQDHILGEGRLLRRAIKADRVGS--LILYGPPGVGKTTLARIIANH-------TR---- 77 (725)
T ss_pred ccccCChHHhcCCCc-HHHhcCcHHHhhhhHHHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHH-------hc----
Confidence 335679999999999 7999999999998899999999999988 8899999558876 6644221 11
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
..|+. +++...+. +++|+.+..+.......+ .+++||||
T Consensus 78 --~~f~~------------------------------lna~~~~i-----~dir~~i~~a~~~l~~~~----~~~IL~ID 116 (725)
T PRK13341 78 --AHFSS------------------------------LNAVLAGV-----KDLRAEVDRAKERLERHG----KRTILFID 116 (725)
T ss_pred --Cccee------------------------------ehhhhhhh-----HHHHHHHHHHHHHhhhcC----CceEEEEe
Confidence 13332 22333343 577777766533222223 25899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 183 EVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
|||+|++.+|++|++.+|+ +.+++|++||+||++.++++++|||.+|+|+|++.+++..+++..+
T Consensus 117 EIh~Ln~~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~ 185 (725)
T PRK13341 117 EVHRFNKAQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKE 185 (725)
T ss_pred ChhhCCHHHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 6678999999999999999999999999999999999999887421
Q ss_pred ---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhC--CCcccHHHHHHHHH
Q psy1686 259 ---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRK--ATEICMEDIRKVYA 308 (448)
Q Consensus 259 ---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~--~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ .||+|.++++|+.+...+...+ ...||.+.+++++.
T Consensus 186 ~~~g~~~v~I~deaL~~La~~s-~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 186 RGYGDRKVDLEPEAEKHLVDVA-NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred hhcCCcccCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 8999999999999 9999999999999875432111 22388888887664
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=232.05 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=168.0
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
||++++||++ ++++|||+|+.+..+.|++++++++.++ +.++||+..|||| +++.... .. ..|
T Consensus 1 pla~~~RP~~-l~d~vGq~~~v~~~~~L~~~i~~~~~~~--ilL~GppGtGKTtLA~~ia~~-------~~------~~~ 64 (413)
T PRK13342 1 PLAERMRPKT-LDEVVGQEHLLGPGKPLRRMIEAGRLSS--MILWGPPGTGKTTLARIIAGA-------TD------APF 64 (413)
T ss_pred ChhhhhCCCC-HHHhcCcHHHhCcchHHHHHHHcCCCce--EEEECCCCCCHHHHHHHHHHH-------hC------CCE
Confidence 7899999998 7999999999999999999999999887 8899999558876 6544221 11 134
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+. +++...+. +++|+.++.+.... ..| .++|+||||||+|
T Consensus 65 ~~------------------------------l~a~~~~~-----~~ir~ii~~~~~~~-~~g----~~~vL~IDEi~~l 104 (413)
T PRK13342 65 EA------------------------------LSAVTSGV-----KDLREVIEEARQRR-SAG----RRTILFIDEIHRF 104 (413)
T ss_pred EE------------------------------EecccccH-----HHHHHHHHHHHHhh-hcC----CceEEEEechhhh
Confidence 33 22222233 67888777654322 233 2589999999999
Q ss_pred CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHh---------c
Q psy1686 188 DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR---------L 258 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~R---------a 258 (448)
+..++++|++.+|+ +.+++|++||+||.+.++++++|||.++.|+|++.+++..+|+.. .
T Consensus 105 ~~~~q~~LL~~le~-----------~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 105 NKAQQDALLPHVED-----------GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred CHHHHHHHHHHhhc-----------CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999994 567889999999999999999999999999999999999988752 2
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+++++++.|++.+ +||+|.++++|+.+... ...|+.++++++++.
T Consensus 174 i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 174 LDDEALDALARLA-NGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred CCHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 8899999999999 99999999999988643 346999999888763
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=229.80 Aligned_cols=226 Identities=20% Similarity=0.274 Sum_probs=174.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ |+++|||+|+. ..|.+++++++++|. ..|+||+..|||| +++. |+.+.| .++
T Consensus 3 ~l~~KyRP~~-~~dvvGq~~v~---~~L~~~i~~~~l~ha-~Lf~GppGtGKTTlA~~l-------A~~l~c-~~~---- 65 (504)
T PRK14963 3 ALYQRARPIT-FDEVVGQEHVK---EVLLAALRQGRLGHA-YLFSGPRGVGKTTTARLI-------AMAVNC-SGE---- 65 (504)
T ss_pred hHHHhhCCCC-HHHhcChHHHH---HHHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHH-------HHHHhc-cCC----
Confidence 4678999999 89999999995 568999999999982 2789999558876 6654 333443 111
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.+.|||+|..|+.+.. +.+++++|...++ |+ +++|+.+..+ ......+ .++|+||||+|
T Consensus 66 ~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~--~v------------d~iR~l~~~~-~~~p~~~----~~kVVIIDEad 126 (504)
T PRK14963 66 DPKPCGECESCLAVRRGAHPDVLEIDAASNN--SV------------EDVRDLREKV-LLAPLRG----GRKVYILDEAH 126 (504)
T ss_pred CCCCCCcChhhHHHhcCCCCceEEecccccC--CH------------HHHHHHHHHH-hhccccC----CCeEEEEECcc
Confidence 1347777777777653 6677788765322 22 7788754433 2222223 36899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+++.+++++|++.+|+++.+ +||++|+. +.+++++++|||.+|+|+|++.+++.+.|+.++
T Consensus 127 ~ls~~a~naLLk~LEep~~~t~~Il~t~~------------~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 127 MMSKSAFNALLKTLEEPPEHVIFILATTE------------PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEEcCC------------hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998765 77777766 678999999999999999999999999988655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|+|+|+|+.+..+ +..||.++|.++++
T Consensus 195 i~~~Al~~ia~~s-~GdlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 195 AEPEALQLVARLA-DGAMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 8999999999999 99999999999987432 23699999988753
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=230.52 Aligned_cols=230 Identities=20% Similarity=0.232 Sum_probs=174.7
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
|.+++||++ |+++|||+++.+. |.+++.+|+++| ..+|+||+..|||+ +++. |+.+.|.. ......
T Consensus 6 l~~kyRP~~-~~eiiGq~~~~~~---L~~~i~~~~i~~-a~Lf~Gp~G~GKTtlA~~l-------A~~l~c~~-~~~~~~ 72 (585)
T PRK14950 6 LYRKWRSQT-FAELVGQEHVVQT---LRNAIAEGRVAH-AYLFTGPRGVGKTSTARIL-------AKAVNCTT-NDPKGR 72 (585)
T ss_pred HHHHhCCCC-HHHhcCCHHHHHH---HHHHHHhCCCce-EEEEECCCCCCHHHHHHHH-------HHHhcCCC-CCCCCC
Confidence 567899999 8999999999754 899999999987 22689998558875 6644 33333311 112345
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
+|..|+.|+.-...++.+++++|..... +. +++|+.++.. ......+ .++|+||||+|+|+
T Consensus 73 ~c~~c~~c~~i~~~~~~d~~~i~~~~~~---------~v-----d~ir~ii~~~-~~~p~~~----~~kVvIIDEa~~L~ 133 (585)
T PRK14950 73 PCGTCEMCRAIAEGSAVDVIEMDAASHT---------SV-----DDAREIIERV-QFRPALA----RYKVYIIDEVHMLS 133 (585)
T ss_pred CCccCHHHHHHhcCCCCeEEEEeccccC---------CH-----HHHHHHHHHH-hhCcccC----CeEEEEEeChHhCC
Confidence 5655555555555556778888754221 22 7888766543 2222223 36999999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCH
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQT 261 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~d 261 (448)
.++++.|+|++|+++.. +||++++. .+++++++.|||+++.|++++..++..+|..++ +++
T Consensus 134 ~~a~naLLk~LEepp~~tv~Il~t~~------------~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~ 201 (585)
T PRK14950 134 TAAFNALLKTLEEPPPHAIFILATTE------------VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP 201 (585)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeCC------------hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999998765 77777765 677889999999999999999999998888654 999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++.+|++.+ +||+|.|++.|+....+ ++..|+.++|++++.
T Consensus 202 eal~~La~~s-~Gdlr~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 202 GALEAIARAA-TGSMRDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 9999999999 99999999999987554 234799999998765
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=220.00 Aligned_cols=229 Identities=20% Similarity=0.206 Sum_probs=169.3
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.|++++||++ |+++|||+++.+ .|.++++.|++++ ..+++|||..|||+ |++.+. .+.|.. .....
T Consensus 6 ~~~~kyRP~~-~~diiGq~~~v~---~L~~~i~~~~i~h-a~Lf~Gp~G~GKtt~A~~lAk-------~l~c~~-~~~~~ 72 (451)
T PRK06305 6 VSSRKYRPQT-FSEILGQDAVVA---VLKNALRFNRAAH-AYLFSGIRGTGKTTLARIFAK-------ALNCQN-PTEDQ 72 (451)
T ss_pred HHHHHhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCce-EEEEEcCCCCCHHHHHHHHHH-------HhcCCC-cccCC
Confidence 5678999998 899999999975 5999999999986 24689999558875 554422 222200 00112
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |||.|..|+++.. +.+++++|....+ |+ +++|+... .+......+ .++|+||||+|
T Consensus 73 ~--~c~~c~~C~~i~~~~~~d~~~i~g~~~~--gi------------d~ir~i~~-~l~~~~~~~----~~kvvIIdead 131 (451)
T PRK06305 73 E--PCNQCASCKEISSGTSLDVLEIDGASHR--GI------------EDIRQINE-TVLFTPSKS----RYKIYIIDEVH 131 (451)
T ss_pred C--CCcccHHHHHHhcCCCCceEEeeccccC--CH------------HHHHHHHH-HHHhhhhcC----CCEEEEEecHH
Confidence 2 4555555555543 4556666543221 22 78886443 322222223 36899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.++++.|+|.+|+++.. +||++|+. +.++.+++.|||.+++|++++.+++.+.|...+
T Consensus 132 ~lt~~~~n~LLk~lEep~~~~~~Il~t~~------------~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 132 MLTKEAFNSLLKTLEEPPQHVKFFLATTE------------IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred hhCHHHHHHHHHHhhcCCCCceEEEEeCC------------hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998766 67777766 678999999999999999999999998887543
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.|+++|+.+..+. + ..|+.++|.++++
T Consensus 200 i~~~al~~L~~~s-~gdlr~a~~~Lekl~~~~---~-~~It~~~V~~l~~ 244 (451)
T PRK06305 200 TSREALLPIARAA-QGSLRDAESLYDYVVGLF---P-KSLDPDSVAKALG 244 (451)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---c-CCcCHHHHHHHHC
Confidence 9999999999999 999999999999876542 2 3599999988764
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=204.47 Aligned_cols=217 Identities=20% Similarity=0.228 Sum_probs=166.1
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCC--CCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEV--VMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~k--i~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+..+||++ +++||||+++++-..+..++-+... +-| +.++|||.-|||| |.|.++. ++. +.+
T Consensus 16 ~e~~lRP~~-l~efiGQ~~vk~~L~ifI~AAk~r~e~lDH--vLl~GPPGlGKTTLA~IIA~E-------mgv----n~k 81 (332)
T COG2255 16 IERSLRPKT-LDEFIGQEKVKEQLQIFIKAAKKRGEALDH--VLLFGPPGLGKTTLAHIIANE-------LGV----NLK 81 (332)
T ss_pred hhcccCccc-HHHhcChHHHHHHHHHHHHHHHhcCCCcCe--EEeeCCCCCcHHHHHHHHHHH-------hcC----CeE
Confidence 456799999 8999999999998888877765444 347 8899999339988 8877442 221 112
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
..+ |.+. .++.++-+++++ +++| +|||||||||
T Consensus 82 ~ts---Gp~l------------------eK~gDlaaiLt~--------------------Le~~------DVLFIDEIHr 114 (332)
T COG2255 82 ITS---GPAL------------------EKPGDLAAILTN--------------------LEEG------DVLFIDEIHR 114 (332)
T ss_pred ecc---cccc------------------cChhhHHHHHhc--------------------CCcC------CeEEEehhhh
Confidence 222 1110 011112222222 3444 8999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCeEEEEecC---------ceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHHH
Q psy1686 187 LDIECFSFLNRALESEMSPVVITATNR---------GVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi~IlaT~~---------~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~ 256 (448)
|++.....|+.++||+...++|..-.. -+++|||||- .-.++.+|.+|+. +.+++-|+.+||.+|+++
T Consensus 115 l~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr--~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r 192 (332)
T COG2255 115 LSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR--AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKR 192 (332)
T ss_pred cChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc--cccccchhHHhcCCeeeeecCCHHHHHHHHHH
Confidence 999999999999999987777632211 1388999985 4568899999996 889999999999999995
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
-+ +++++...||+.| +|.+|.|..||.+..++|.-.+...|+.+.+.+++.++
T Consensus 193 ~a~~l~i~i~~~~a~eIA~rS-RGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 193 SAKILGIEIDEEAALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHhCCCCChHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 44 9999999999999 99999999999999999987788899999999999864
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=226.39 Aligned_cols=229 Identities=19% Similarity=0.226 Sum_probs=172.1
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
|+.+..||++ |++++||+++. ..|.++++++++++ -.+|+||+..|||+ |++.+ +.+.|.. ...+
T Consensus 5 pl~~kyRP~~-f~~liGq~~i~---~~L~~~l~~~rl~~-a~Lf~Gp~G~GKttlA~~lA-------k~L~c~~--~~~~ 70 (620)
T PRK14948 5 PLHHKYRPQR-FDELVGQEAIA---TTLKNALISNRIAP-AYLFTGPRGTGKTSSARILA-------KSLNCLN--SDKP 70 (620)
T ss_pred hHHHHhCCCc-HhhccChHHHH---HHHHHHHHcCCCCc-eEEEECCCCCChHHHHHHHH-------HHhcCCC--cCCC
Confidence 6778899998 89999999996 45899999999864 36789998558875 66553 3333311 1122
Q ss_pred cccCCCcccceeee--eeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTV--VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei--~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
..-|||.|.-|+.+ ..+.+++++|.... .|+ +++|+.+..+. .....+ .++|+||||+|
T Consensus 71 ~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~--~~v------------d~IReii~~a~-~~p~~~----~~KViIIDEad 131 (620)
T PRK14948 71 TPEPCGKCELCRAIAAGNALDVIEIDAASN--TGV------------DNIRELIERAQ-FAPVQA----RWKVYVIDECH 131 (620)
T ss_pred CCCCCcccHHHHHHhcCCCccEEEEecccc--CCH------------HHHHHHHHHHh-hChhcC----CceEEEEECcc
Confidence 22345554444444 45667788865421 122 88998886652 222233 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+|+.+++++|+|++|+++.. +||++|+. +.++.++|+|||+++.|++++.+++...|...+
T Consensus 132 ~Lt~~a~naLLK~LEePp~~tvfIL~t~~------------~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 132 MLSTAAFNALLKTLEEPPPRVVFVLATTD------------PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred ccCHHHHHHHHHHHhcCCcCeEEEEEeCC------------hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998877 67888876 667889999999999999999999988777533
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|+|+++|+....+. ..||.++|.++.+
T Consensus 200 is~~al~~La~~s-~G~lr~A~~lLeklsL~~-----~~It~e~V~~lvg 243 (620)
T PRK14948 200 IEPEALTLVAQRS-QGGLRDAESLLDQLSLLP-----GPITPEAVWDLLG 243 (620)
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc-----CCCCHHHHHHHhc
Confidence 8899999999999 999999999999875542 2588888887654
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=204.89 Aligned_cols=213 Identities=17% Similarity=0.160 Sum_probs=155.3
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+|+.++.||++ ++++|||+++.+ .|+++++++++++ +.++|||..|||+ +++.+. +..+ + .
T Consensus 1 ~~w~~kyrP~~-l~~~~g~~~~~~---~L~~~~~~~~~~~--lll~Gp~G~GKTtla~~la~-------~l~~---~--~ 62 (319)
T PLN03025 1 LPWVEKYRPTK-LDDIVGNEDAVS---RLQVIARDGNMPN--LILSGPPGTGKTTSILALAH-------ELLG---P--N 62 (319)
T ss_pred CChhhhcCCCC-HHHhcCcHHHHH---HHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHH-------HHhc---c--c
Confidence 57889999999 799999999875 4888999998877 8899999558875 553322 1111 1 1
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|. ....|++....+ |. +.+|+.|........... .-.++|+||||+|+
T Consensus 63 ~~----------------~~~~eln~sd~~---------~~-----~~vr~~i~~~~~~~~~~~--~~~~kviiiDE~d~ 110 (319)
T PLN03025 63 YK----------------EAVLELNASDDR---------GI-----DVVRNKIKMFAQKKVTLP--PGRHKIVILDEADS 110 (319)
T ss_pred Cc----------------cceeeecccccc---------cH-----HHHHHHHHHHHhccccCC--CCCeEEEEEechhh
Confidence 10 011223222221 22 567766654322111000 01358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++..+|++|++.+|+++.. .||+++|. +.+++++|+|||.+++|+|++.+++.+.|+..| +
T Consensus 111 lt~~aq~aL~~~lE~~~~~t~~il~~n~------------~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i 178 (319)
T PLN03025 111 MTSGAQQALRRTMEIYSNTTRFALACNT------------SSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY 178 (319)
T ss_pred cCHHHHHHHHHHHhcccCCceEEEEeCC------------ccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999987654 57777775 667889999999999999999999999998666 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++|++.+ +||+|.|+|.|+.+. . +...||.++|.++.+
T Consensus 179 ~~~~l~~i~~~~-~gDlR~aln~Lq~~~--~---~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 179 VPEGLEAIIFTA-DGDMRQALNNLQATH--S---GFGFVNQENVFKVCD 221 (319)
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHH--h---cCCCCCHHHHHHHcC
Confidence 999999999999 999999999999543 1 234699988887653
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=197.54 Aligned_cols=308 Identities=20% Similarity=0.248 Sum_probs=202.5
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
|++++.||++ ++++|||+++.+ .|.+++++|++++. ..++|||..|||+ ++..+ +.+.|. ....+
T Consensus 3 ~~~~~~rp~~-~~~iig~~~~~~---~l~~~~~~~~~~~~-~Ll~G~~G~GKt~~a~~la-------~~l~~~--~~~~~ 68 (355)
T TIGR02397 3 VLARKYRPQT-FEDVIGQEHIVQ---TLKNAIKNGRIAHA-YLFSGPRGTGKTSIARIFA-------KALNCQ--NGPDG 68 (355)
T ss_pred cHHHHhCCCc-HhhccCcHHHHH---HHHHHHHcCCCCeE-EEEECCCCCCHHHHHHHHH-------HHhcCC--CCCCC
Confidence 6788999998 899999999975 48899999999873 3689999558875 54332 222220 11123
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
. |+|+|..|+.+.. +..++++|..... + .+++|+.++.+. .....+ .++|++|||+|
T Consensus 69 ~--~c~~c~~c~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~l~~~~~-~~p~~~----~~~vviidea~ 127 (355)
T TIGR02397 69 E--PCNECESCKEINSGSSLDVIEIDAASNN---------G-----VDDIREILDNVK-YAPSSG----KYKVYIIDEVH 127 (355)
T ss_pred C--CCCCCHHHHHHhcCCCCCEEEeeccccC---------C-----HHHHHHHHHHHh-cCcccC----CceEEEEeChh
Confidence 3 5676666655443 3455555443110 1 156777776542 222223 35899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+++..+++.|++.+|+++.+ +||++|+. +.++++++.|||.++.|+|++.+++.++|..++
T Consensus 128 ~l~~~~~~~Ll~~le~~~~~~~lIl~~~~------------~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 128 MLSKSAFNALLKTLEEPPEHVVFILATTE------------PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred hcCHHHHHHHHHHHhCCccceeEEEEeCC------------HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998776 56666665 667889999999999999999999999998655
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCCC
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAG 338 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~~ 338 (448)
++++++++|++.+ +||+|.|++.|+.+..++ .+.||.++|+++.....+ ....++++ .+..++..
T Consensus 196 i~~~a~~~l~~~~-~g~~~~a~~~lekl~~~~----~~~it~~~v~~~~~~~~~-~~i~~l~~---------ai~~~~~~ 260 (355)
T TIGR02397 196 IEDEALELIARAA-DGSLRDALSLLDQLISFG----NGNITYEDVNELLGLVDD-EKLIELLE---------AILNKDTA 260 (355)
T ss_pred CCHHHHHHHHHHc-CCChHHHHHHHHHHHhhc----CCCCCHHHHHHHhCCCCH-HHHHHHHH---------HHHcCCHH
Confidence 9999999999999 999999999999887654 235999999988753211 11111111 11111110
Q ss_pred CcccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHH
Q psy1686 339 DTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE 408 (448)
Q Consensus 339 ~~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~ 408 (448)
++.--...+.+-.. ....++..+..+-+|+.-.+..|. ...-|++..++.+-+.+.+|=.
T Consensus 261 ~a~~~~~~l~~~~~----~~~~il~~l~~~~r~l~~~k~~~~------~~~~i~~~~~~~l~~~a~~~s~ 320 (355)
T TIGR02397 261 EALKILDEILESGV----DPEKFLEDLIEILRDLLLIKKTPS------NLLAVLESEQEFLKELALKLSL 320 (355)
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHhhcCc------cccccCHHHHHHHHHHHHhCCH
Confidence 00000011111111 133466777777777766653320 1112677777777777777744
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=191.93 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=149.7
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.-+..||++ +++++||+++.. +|.+.+..+-.++ +.|+|||.+|||+ +++. |++..+ . .
T Consensus 26 wteKYrPkt-~de~~gQe~vV~---~L~~a~~~~~lp~--~LFyGPpGTGKTStalaf-------ar~L~~-----~--~ 85 (346)
T KOG0989|consen 26 WTEKYRPKT-FDELAGQEHVVQ---VLKNALLRRILPH--YLFYGPPGTGKTSTALAF-------ARALNC-----E--Q 85 (346)
T ss_pred hHHHhCCCc-HHhhcchHHHHH---HHHHHHhhcCCce--EEeeCCCCCcHhHHHHHH-------HHHhcC-----c--c
Confidence 568899999 799999999974 5899988844445 8999999657763 4444 444442 1 2
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHH-----hCcccccCeEEEEec
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE-----EGKAEIVPGVLFIDE 183 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~-----~g~~~i~~~VLfIDE 183 (448)
..|+|-|.- |+ ++...| .=+|+.+...- +... .|..--.++|+++||
T Consensus 86 ~~~~rvl~l----------------na----------SderGi-svvr~Kik~fa-kl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 86 LFPCRVLEL----------------NA----------SDERGI-SVVREKIKNFA-KLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ccccchhhh----------------cc----------cccccc-cchhhhhcCHH-HHhhccccccCCCCCcceEEEEec
Confidence 344444332 11 111111 23444443321 1111 111111239999999
Q ss_pred cCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 184 VHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 184 VH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
.|.++.+||++|.|++|+++-. .||+-+|. .-.||.++.|||.=|+|+|+..+++.+.|+.-|
T Consensus 138 cdsmtsdaq~aLrr~mE~~s~~trFiLIcny------------lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~ 205 (346)
T KOG0989|consen 138 CDSMTSDAQAALRRTMEDFSRTTRFILICNY------------LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG 205 (346)
T ss_pred hhhhhHHHHHHHHHHHhccccceEEEEEcCC------------hhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 9999999999999999997765 89999998 777999999999999999999999999998777
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCccc
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEIC 299 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It 299 (448)
||++|+++|+++| +||+|+|+.+|+.++. .+++||
T Consensus 206 v~~d~~al~~I~~~S-~GdLR~Ait~Lqsls~-----~gk~It 242 (346)
T KOG0989|consen 206 VDIDDDALKLIAKIS-DGDLRRAITTLQSLSL-----LGKRIT 242 (346)
T ss_pred CCCCHHHHHHHHHHc-CCcHHHHHHHHHHhhc-----cCcccc
Confidence 9999999999999 9999999999998865 344566
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=192.15 Aligned_cols=306 Identities=17% Similarity=0.234 Sum_probs=197.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.++++++||++ ++++|||+.+.+ .+.+.+++|++++ ...++|||..|||+ ++..+.. ..+ .
T Consensus 5 ~~~~~k~rP~~-~~~iig~~~~~~---~l~~~i~~~~~~~-~~L~~G~~G~GKt~~a~~la~~-------l~~------~ 66 (367)
T PRK14970 5 VVSARKYRPQT-FDDVVGQSHITN---TLLNAIENNHLAQ-ALLFCGPRGVGKTTCARILARK-------INQ------P 66 (367)
T ss_pred HHHHHHHCCCc-HHhcCCcHHHHH---HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHHH-------hcC------C
Confidence 45788999999 899999999975 5899999999875 35689999558875 4433221 111 0
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
..+-+ ++ ...+++.|+|..+++ ++ +++|+.+..+. .....+ .+.|+||||+|.
T Consensus 67 ~~~~~-~~-------~~~~~~~~l~~~~~~--~~------------~~i~~l~~~~~-~~p~~~----~~kiviIDE~~~ 119 (367)
T PRK14970 67 GYDDP-NE-------DFSFNIFELDAASNN--SV------------DDIRNLIDQVR-IPPQTG----KYKIYIIDEVHM 119 (367)
T ss_pred CCCCC-CC-------CCCcceEEeccccCC--CH------------HHHHHHHHHHh-hccccC----CcEEEEEeChhh
Confidence 00000 00 012333344443322 11 67777666542 111223 358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++..+++.|++.+|+++.+ +||++++. +.++.+++.|||.++.|+|++.+++..+|...+ +
T Consensus 120 l~~~~~~~ll~~le~~~~~~~~Il~~~~------------~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i 187 (367)
T PRK14970 120 LSSAAFNAFLKTLEEPPAHAIFILATTE------------KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF 187 (367)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEEeCC------------cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999997765 66777665 678899999999999999999999998888644 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhcccCCCCC
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAGD 339 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~~~~~~~~ 339 (448)
+++++++|++.+ +||+|.|++.|+....++. . .||.++|+.+.... ......++++ .+..++...
T Consensus 188 ~~~al~~l~~~~-~gdlr~~~~~lekl~~y~~---~-~it~~~v~~~~~~~-~~~~if~l~~---------ai~~~~~~~ 252 (367)
T PRK14970 188 EDDALHIIAQKA-DGALRDALSIFDRVVTFCG---K-NITRQAVTENLNIL-DYDTYINVTD---------LILENKIPE 252 (367)
T ss_pred CHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC---C-CCCHHHHHHHhCCC-CHHHHHHHHH---------HHHcCCHHH
Confidence 999999999999 9999999999999877652 2 39999999887532 1111111111 000011000
Q ss_pred cccccccccccCchhhHHHHHHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhcccee
Q psy1686 340 TKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEK 414 (448)
Q Consensus 340 ~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~ael 414 (448)
.--....+...-+ ..-+++..+..|-+|++..+..+..+ .-.+++..++.+.+.+++|=.+....+
T Consensus 253 a~~~~~~l~~~~~----~~~~il~~l~~~fr~ll~~k~~~~~~-----~l~~~~~~~~~~~~~a~~~s~~~L~~~ 318 (367)
T PRK14970 253 LLLAFNEILRKGF----DGHHFIAGLASHFRDLMVSKTPATIA-----LLEVGEQAKKRYEVQSQKVSQSFLLSG 318 (367)
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHhhccCccc-----cccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000011111111 11236777888888888886532211 123557778888888888876443333
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=193.38 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=147.4
Q ss_pred cccccccchhhhhhhHHHHHHHhcCC---------CCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEV---------VMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~k---------i~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.|++++||+++.+. |+++|++++ ++| -..|+||+..|||+ |+.. |+.+.| +....
T Consensus 3 ~f~~IiGq~~~~~~---L~~~i~~~~~~~~~~~~~l~h-a~Lf~Gp~G~GKt~lA~~l-------A~~l~c---~~~~~- 67 (394)
T PRK07940 3 VWDDLVGQEAVVAE---LRAAARAARADVAAAGSGMTH-AWLFTGPPGSGRSVAARAF-------AAALQC---TDPDE- 67 (394)
T ss_pred hhhhccChHHHHHH---HHHHHHhccccccccCCCCCe-EEEEECCCCCcHHHHHHHH-------HHHhCC---CCCCC-
Confidence 37899999999755 999999987 654 35689998447765 5533 333333 11122
Q ss_pred ccCCCcccceeeee--eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 109 RCPDGELQKRKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 109 ~~p~ge~~k~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
-|||+|..|+.+. .+.++|.++.-. .. -+. ++||+.+..+. ....+| .++|+||||+|+
T Consensus 68 -~~Cg~C~~C~~~~~~~hpD~~~i~~~~-~~-------i~i-----~~iR~l~~~~~-~~p~~~----~~kViiIDead~ 128 (394)
T PRK07940 68 -PGCGECRACRTVLAGTHPDVRVVAPEG-LS-------IGV-----DEVRELVTIAA-RRPSTG----RWRIVVIEDADR 128 (394)
T ss_pred -CCCCCCHHHHHHhcCCCCCEEEecccc-cc-------CCH-----HHHHHHHHHHH-hCcccC----CcEEEEEechhh
Confidence 3566666555554 466777664321 11 122 78887766543 222233 468999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHH
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGL 264 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal 264 (448)
++.+++|+|+|++|+|+.+ +||++|+. +..++++++|||++++|+|++.+++.+.|..+. ++++++
T Consensus 129 m~~~aanaLLk~LEep~~~~~fIL~a~~------------~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~a 196 (394)
T PRK07940 129 LTERAANALLKAVEEPPPRTVWLLCAPS------------PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPETA 196 (394)
T ss_pred cCHHHHHHHHHHhhcCCCCCeEEEEECC------------hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999998876 67777776 788999999999999999999999999997443 999999
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q psy1686 265 RVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 265 ~~La~~a~~Gd~R~AL~lLe 284 (448)
..+++.| +|+++.|+.+++
T Consensus 197 ~~la~~s-~G~~~~A~~l~~ 215 (394)
T PRK07940 197 RRAARAS-QGHIGRARRLAT 215 (394)
T ss_pred HHHHHHc-CCCHHHHHHHhc
Confidence 9999999 999999998865
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=185.22 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=147.3
Q ss_pred CCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCcc-ccccCCCccCCCCcccc
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREE-EPDYDGWLADVTKDLRC 110 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~-a~~~d~~~~~~~~fv~~ 110 (448)
...|+. ++.++||+++... |..++++|+++| ...++||+..||++ ++..+..--+. ..... ......
T Consensus 16 ~~~P~~-~~~l~Gh~~a~~~---L~~a~~~grl~h-a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~------~~~~~~ 84 (351)
T PRK09112 16 VPSPSE-NTRLFGHEEAEAF---LAQAYREGKLHH-ALLFEGPEGIGKATLAFHLANHILSHPDPAEA------PETLAD 84 (351)
T ss_pred CCCCCc-hhhccCcHHHHHH---HHHHHHcCCCCe-eEeeECCCCCCHHHHHHHHHHHHcCCCccccC------ccccCC
Confidence 367998 7999999999754 899999999987 45678988448876 44221111000 00000 011122
Q ss_pred CCCcccceeee--eeccchhhhhhh-ccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 111 PDGELQKRKTV--VHTVTLHEIDVI-NSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 111 p~ge~~k~kei--~~~vtLheiD~~-nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+|.|.-|+.+ ..+.+++.+..- +.+ .|- .+.+|+ +++|+.++ .......+| .+.|++|||+|+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~-~~~------~~~~I~vd~iR~l~~-~l~~~~~~g----~~rVviIDeAd~ 152 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEK-TGK------FKTAITVDEIRRVGH-FLSQTSGDG----NWRIVIIDPADD 152 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccc-ccc------ccccCCHHHHHHHHH-HhhhccccC----CceEEEEEchhh
Confidence 44554444443 334555544311 111 000 012222 66775433 222222234 358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----CCH
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----MQT 261 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----i~d 261 (448)
|+.+++|+|+|++|+|+.. +||+.|+. +..++++++|||+.++|.|++.+++.++|+..+ +++
T Consensus 153 l~~~aanaLLk~LEEpp~~~~fiLit~~------------~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~ 220 (351)
T PRK09112 153 MNRNAANAILKTLEEPPARALFILISHS------------SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDG 220 (351)
T ss_pred cCHHHHHHHHHHHhcCCCCceEEEEECC------------hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCH
Confidence 9999999999999998764 77777765 677899999999999999999999999999644 668
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
+++..+++.| +|++|.|+++++..
T Consensus 221 ~~~~~i~~~s-~G~pr~Al~ll~~~ 244 (351)
T PRK09112 221 EITEALLQRS-KGSVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHhcC
Confidence 9999999999 99999999998754
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-19 Score=180.17 Aligned_cols=223 Identities=18% Similarity=0.138 Sum_probs=153.5
Q ss_pred CCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccc-cccCCCccCCCCccccC
Q psy1686 34 LEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEE-PDYDGWLADVTKDLRCP 111 (448)
Q Consensus 34 ~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a-~~~d~~~~~~~~fv~~p 111 (448)
.+|++ ++++|||+++.+ .|.+++.+|+++|- ..|+||+..||++ |...+..=-|.. ..-++-..+......|+
T Consensus 13 ~~P~~-~~~iiGq~~~~~---~L~~~~~~~rl~HA-~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~ 87 (365)
T PRK07471 13 PHPRE-TTALFGHAAAEA---ALLDAYRSGRLHHA-WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDP 87 (365)
T ss_pred CCCCc-hhhccChHHHHH---HHHHHHHcCCCCce-EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCC
Confidence 68998 799999999975 48999999999983 3578988448865 432111100000 00000000112233466
Q ss_pred CCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHH
Q psy1686 112 DGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIE 190 (448)
Q Consensus 112 ~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~ 190 (448)
.|..|++-+-..+.++|.+.-......+ ..+.+|+ ++||+.+... .....+-.+.|++|||+|+++.+
T Consensus 88 ~c~~c~~i~~~~HPDl~~i~~~~~~~~~------~~~~~I~VdqiR~l~~~~-----~~~~~~~~~kVviIDead~m~~~ 156 (365)
T PRK07471 88 DHPVARRIAAGAHGGLLTLERSWNEKGK------RLRTVITVDEVRELISFF-----GLTAAEGGWRVVIVDTADEMNAN 156 (365)
T ss_pred CChHHHHHHccCCCCeEEEecccccccc------cccccccHHHHHHHHHHh-----CcCcccCCCEEEEEechHhcCHH
Confidence 6666666666678888877532111000 0012332 7788755433 12222224689999999999999
Q ss_pred HHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--CCHHHHHHH
Q psy1686 191 CFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVL 267 (448)
Q Consensus 191 ~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--i~deal~~L 267 (448)
++|+|+|++|+|+. .+||+.|+. +..++++++|||+.++|.|++.+++.+.|..+. .+++++..+
T Consensus 157 aanaLLK~LEepp~~~~~IL~t~~------------~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l 224 (365)
T PRK07471 157 AANALLKVLEEPPARSLFLLVSHA------------PARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAAL 224 (365)
T ss_pred HHHHHHHHHhcCCCCeEEEEEECC------------chhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHHHHHHH
Confidence 99999999999876 478887777 667899999999999999999999999998655 566667888
Q ss_pred HHHcCCCCHHHHHHHHHH
Q psy1686 268 TKIALDTSLRYAIQLITT 285 (448)
Q Consensus 268 a~~a~~Gd~R~AL~lLe~ 285 (448)
++.| +|++|.|+++++.
T Consensus 225 ~~~s-~Gsp~~Al~ll~~ 241 (365)
T PRK07471 225 AALA-EGSVGRALRLAGG 241 (365)
T ss_pred HHHc-CCCHHHHHHHhcc
Confidence 9999 9999999999863
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-18 Score=170.11 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=150.5
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLR 109 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~ 109 (448)
...+||+. +++||||++..+....+....+...-+.+.+.++|||..|||+ ++..++ +++. ...+..
T Consensus 16 ~~~~rP~~-~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~-------~l~~----~~~~~~ 83 (328)
T PRK00080 16 ERSLRPKS-LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN-------EMGV----NIRITS 83 (328)
T ss_pred hhhcCcCC-HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH-------HhCC----CeEEEe
Confidence 46899998 8999999999988665555544332233458899999558876 553322 1111 001111
Q ss_pred cCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH
Q psy1686 110 CPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI 189 (448)
Q Consensus 110 ~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~ 189 (448)
|... .. ..++...+. .+ + .++|+||||||+++.
T Consensus 84 ---~~~~----------------------------~~-----~~~l~~~l~----~l---~----~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 84 ---GPAL----------------------------EK-----PGDLAAILT----NL---E----EGDVLFIDEIHRLSP 116 (328)
T ss_pred ---cccc----------------------------cC-----hHHHHHHHH----hc---c----cCCEEEEecHhhcch
Confidence 1000 00 022322221 11 1 248999999999999
Q ss_pred HHHHHHHHhhhhcCCCeEEEE---------ecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHHHHHHHHhc-
Q psy1686 190 ECFSFLNRALESEMSPVVITA---------TNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRL- 258 (448)
Q Consensus 190 ~~f~~Llk~lEe~~~pi~Ila---------T~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~Ra- 258 (448)
..++.|+.++|+....+++-. .-..+++|++|+. +..++++|.||| .+++|.+|+.+++.+||+..+
T Consensus 117 ~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~--~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 117 VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR--AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC--cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 999999999997643222200 0012466777664 356889999998 579999999999999999665
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++++++++|++.+ +|++|.|.++|+++..+|...+...|+.+++++++..+
T Consensus 195 ~~~~~~~~~~~~~ia~~~-~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 195 ILGVEIDEEGALEIARRS-RGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HcCCCcCHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999999 99999999999998877754455689999999999754
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=170.30 Aligned_cols=208 Identities=18% Similarity=0.152 Sum_probs=140.9
Q ss_pred ccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccce
Q psy1686 40 SQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKR 118 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~ 118 (448)
|++++||+++.+ .|.+++++|++++ -..++||+..||++ |... |+..-| + . |+|.|..|
T Consensus 3 f~~iiGq~~~~~---~L~~~i~~~rl~h-a~Lf~G~~G~Gk~~~A~~~-------a~~llc---~--~----~c~~c~~~ 62 (314)
T PRK07399 3 FANLIGQPLAIE---LLTAAIKQNRIAP-AYLFAGPEGVGRKLAALCF-------IEGLLS---Q--G----SPSKNIRR 62 (314)
T ss_pred HHHhCCHHHHHH---HHHHHHHhCCCCc-eEEEECCCCCCHHHHHHHH-------HHHHcC---C--C----CCCCcHhc
Confidence 789999999974 5999999999976 35688998447754 4322 222222 1 1 34444444
Q ss_pred e-eeeeccchhhhhhhcccccc--chhhhc-------CCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 119 K-TVVHTVTLHEIDVINSRTHG--FLALFA-------GDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 119 k-ei~~~vtLheiD~~nsr~~g--~~a~~~-------~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+ .-..+.+||.++-.... +| ++.-+. .....|+ +++|+.+... .....+| .++|++||++|++
T Consensus 63 ~~~~~~hPDl~~i~p~~~~-~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~~~p~~~----~~kVvII~~ae~m 136 (314)
T PRK07399 63 RLEEGNHPDLLWVEPTYQH-QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL-SRPPLEA----PRKVVVIEDAETM 136 (314)
T ss_pred ccccCCCCCEEEEeccccc-cccccchhhhhhccccccccccCcHHHHHHHHHHH-ccCcccC----CceEEEEEchhhc
Confidence 4 12235666655432110 11 111000 1112332 5677644432 2222233 4699999999999
Q ss_pred CHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcC-C--HHHH
Q psy1686 188 DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLM-Q--TDGL 264 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai-~--deal 264 (448)
+..+.|+|+|++|||+..+||+.|+. +..++++++|||++++|.|++.+++.++|+..+. + +..+
T Consensus 137 ~~~aaNaLLK~LEEPp~~~fILi~~~------------~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~ 204 (314)
T PRK07399 137 NEAAANALLKTLEEPGNGTLILIAPS------------PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINF 204 (314)
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEECC------------hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchhHH
Confidence 99999999999999995588888876 6789999999999999999999999999996552 1 2225
Q ss_pred HHHHHHcCCCCHHHHHHHHHHH
Q psy1686 265 RVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 265 ~~La~~a~~Gd~R~AL~lLe~a 286 (448)
..++..| +||+|.|+++++..
T Consensus 205 ~~l~~~a-~Gs~~~al~~l~~~ 225 (314)
T PRK07399 205 PELLALA-QGSPGAAIANIEQL 225 (314)
T ss_pred HHHHHHc-CCCHHHHHHHHHHH
Confidence 6788899 99999999998754
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=183.07 Aligned_cols=248 Identities=21% Similarity=0.247 Sum_probs=155.7
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADVT 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~~ 105 (448)
-||.++.||++ |++++||+++.++ ++.++..... +.+.++||+.+|||+ |+.... +.+.....+. ++.
T Consensus 53 ~~~~~~~rp~~-f~~iiGqs~~i~~---l~~al~~~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~----~~~ 122 (531)
T TIGR02902 53 EPLSEKTRPKS-FDEIIGQEEGIKA---LKAALCGPNP--QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK----EGA 122 (531)
T ss_pred chHHHhhCcCC-HHHeeCcHHHHHH---HHHHHhCCCC--ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC----CCC
Confidence 48899999998 8999999999766 4555544433 347899999558876 663321 1111000110 112
Q ss_pred CccccCCCcc-cceeeeeecc--chhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 106 KDLRCPDGEL-QKRKTVVHTV--TLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 106 ~fv~~p~ge~-~k~kei~~~v--tLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
.|+.+.+... ...+.+.... +.|+-....+.. .|..+ +...-...+. ++ ..++||||
T Consensus 123 ~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~-------~g~~g-~~~~~~G~l~----------~a--~gG~L~Id 182 (531)
T TIGR02902 123 AFVEIDATTARFDERGIADPLIGSVHDPIYQGAGP-------LGIAG-IPQPKPGAVT----------RA--HGGVLFID 182 (531)
T ss_pred CEEEEccccccCCccccchhhcCCcccchhccccc-------cccCC-cccccCchhh----------cc--CCcEEEEe
Confidence 4554332110 0000000000 001100000000 00000 0000000011 11 24899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcCC--------------C---eEEEE--ecCceeEeeccccCCCCCCChhhhhhcccccCC
Q psy1686 183 EVHMLDIECFSFLNRALESEMS--------------P---VVITA--TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQ 243 (448)
Q Consensus 183 EVH~L~~~~f~~Llk~lEe~~~--------------p---i~Ila--T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~ 243 (448)
|||+|+..+|+.|++.+|+... | ..|+. -.-...+|++||.+ +..+|++++|||..+.|+
T Consensus 183 EI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-p~~L~paLrsR~~~I~f~ 261 (531)
T TIGR02902 183 EIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN-PEEIPPALRSRCVEIFFR 261 (531)
T ss_pred chhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCC-cccCChHHhhhhheeeCC
Confidence 9999999999999999997420 1 01110 11234677887776 568999999999999999
Q ss_pred CCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 244 pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
||+.+|+.+|++..+ ++++++++|++++ . +.|.+.|+++.|+.+|..++...|+.+||++++.
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~-~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA-S-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-h-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999999999765 9999999999987 4 8999999999998887656667899999999986
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-18 Score=175.04 Aligned_cols=198 Identities=15% Similarity=0.102 Sum_probs=141.7
Q ss_pred cccccc-chhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccc
Q psy1686 40 SQGMVG-QLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQK 117 (448)
Q Consensus 40 ~~~~VG-Q~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k 117 (448)
++.++| |+++.+ .|.+++++|+++|.+ .++|||..||++ |+..++ .+.| + ...-.-|||+|.-
T Consensus 4 ~~~i~~~q~~~~~---~L~~~~~~~~l~ha~-Lf~G~~G~gk~~~a~~la~-------~l~c---~-~~~~~~~cg~C~~ 68 (329)
T PRK08058 4 WEQLTALQPVVVK---MLQNSIAKNRLSHAY-LFEGAKGTGKKATALWLAK-------SLFC---L-ERNGVEPCGTCTN 68 (329)
T ss_pred HHHHHhhHHHHHH---HHHHHHHcCCCCceE-EEECCCCCCHHHHHHHHHH-------HHCC---C-CCCCCCCCCcCHH
Confidence 577888 998875 589999999999822 689999448764 553322 2222 0 0111124555555
Q ss_pred eeeee--eccchhhhhhhccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHH
Q psy1686 118 RKTVV--HTVTLHEIDVINSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSF 194 (448)
Q Consensus 118 ~kei~--~~vtLheiD~~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~ 194 (448)
|+.+. .+.++|.+.... . .|+ ++||+.++..-.. ..+| .++|++|||+|+++.+++|+
T Consensus 69 c~~~~~~~hpD~~~i~~~~------------~--~i~id~ir~l~~~~~~~-~~~~----~~kvviI~~a~~~~~~a~Na 129 (329)
T PRK08058 69 CKRIDSGNHPDVHLVAPDG------------Q--SIKKDQIRYLKEEFSKS-GVES----NKKVYIIEHADKMTASAANS 129 (329)
T ss_pred HHHHhcCCCCCEEEecccc------------c--cCCHHHHHHHHHHHhhC-Cccc----CceEEEeehHhhhCHHHHHH
Confidence 55444 355665553321 1 122 7888877654221 1233 35899999999999999999
Q ss_pred HHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy1686 195 LNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALD 273 (448)
Q Consensus 195 Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~ 273 (448)
|+|++||||.+ +||+.|+. +.+++++++|||++++|+|++.+++.+.|+.+.++++...+++..+
T Consensus 130 LLK~LEEPp~~~~~Il~t~~------------~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~gi~~~~~~~l~~~~-- 195 (329)
T PRK08058 130 LLKFLEEPSGGTTAILLTEN------------KHQILPTILSRCQVVEFRPLPPESLIQRLQEEGISESLATLLAGLT-- 195 (329)
T ss_pred HHHHhcCCCCCceEEEEeCC------------hHhCcHHHHhhceeeeCCCCCHHHHHHHHHHcCCChHHHHHHHHHc--
Confidence 99999999887 67777775 7789999999999999999999999999985558888777777764
Q ss_pred CCHHHHHHHHHH
Q psy1686 274 TSLRYAIQLITT 285 (448)
Q Consensus 274 Gd~R~AL~lLe~ 285 (448)
|+++.|+.+++.
T Consensus 196 g~~~~A~~l~~~ 207 (329)
T PRK08058 196 NSVEEALALSED 207 (329)
T ss_pred CCHHHHHHHhcC
Confidence 689999988763
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=163.50 Aligned_cols=212 Identities=19% Similarity=0.220 Sum_probs=150.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+..+..||++ +++++||+++.+. |+++++.++.++ +.++|+|..|||+ ++...+. ... .+....
T Consensus 5 ~~w~~kyrP~~-~~~~~g~~~~~~~---l~~~i~~~~~~~--~ll~G~~G~GKt~~~~~l~~~-------l~~-~~~~~~ 70 (319)
T PRK00440 5 EIWVEKYRPRT-LDEIVGQEEIVER---LKSYVKEKNMPH--LLFAGPPGTGKTTAALALARE-------LYG-EDWREN 70 (319)
T ss_pred CccchhhCCCc-HHHhcCcHHHHHH---HHHHHhCCCCCe--EEEECCCCCCHHHHHHHHHHH-------HcC-Cccccc
Confidence 46678999998 7999999998754 889998887766 8999999558875 4422111 000 000001
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+ +++....+ +. +-+++.+........ .+.. .++++||||+|.
T Consensus 71 ~i--------------------~~~~~~~~---------~~-----~~~~~~i~~~~~~~~-~~~~--~~~vviiDe~~~ 113 (319)
T PRK00440 71 FL--------------------ELNASDER---------GI-----DVIRNKIKEFARTAP-VGGA--PFKIIFLDEADN 113 (319)
T ss_pred eE--------------------Eecccccc---------ch-----HHHHHHHHHHHhcCC-CCCC--CceEEEEeCccc
Confidence 11 11111111 11 234444443322211 1111 258999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
|+.+.++.|.+.+|+++.. .+|++++. +.++.+++.|||.++.|+|++.+++..++..++ +
T Consensus 114 l~~~~~~~L~~~le~~~~~~~lIl~~~~------------~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 114 LTSDAQQALRRTMEMYSQNTRFILSCNY------------SSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEEeCC------------ccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999986654 66666554 456778999999999999999999999998766 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++|++.+ +||+|.|++.|+.+... +..||.++|+.+..
T Consensus 182 ~~~al~~l~~~~-~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 182 TDDALEAIYYVS-EGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 999999999999 99999999999976543 34799999998875
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-18 Score=170.25 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=84.9
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-------------CCHHHHHHHHHHcCCCCHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-------------MQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-------------i~deal~~La~~a~~Gd~R 277 (448)
++|.+++||+|||||+|.++++|||||+||.|+|++.++|.++|+ || ++++++++|++.| +||+|
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~-ral~~~~~~~~~~~~i~~~al~~ia~~a-~GDaR 82 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIE-KALSQDEVLAKHKFKIDDGLYNAMHNYN-EGDCR 82 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHH-HHHHhhhccCCcCCCcCHHHHHHHHHhc-CCHHH
Confidence 479999999999999999999999999999999999999999998 44 8899999999999 99999
Q ss_pred HHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 278 YAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 278 ~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.|||+||.|...+...+...||.++|+++++
T Consensus 83 ~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~ 113 (300)
T PRK14700 83 KILNLLERMFLISTRGDEIYLNKELFDQAVG 113 (300)
T ss_pred HHHHHHHHHHhhccccCCCccCHHHHHHHHh
Confidence 9999999987543222223599999999885
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=167.75 Aligned_cols=188 Identities=14% Similarity=0.052 Sum_probs=134.7
Q ss_pred HHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeee--eccchhhhh
Q psy1686 55 VVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV--HTVTLHEID 131 (448)
Q Consensus 55 ~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~--~~vtLheiD 131 (448)
...+++++||++|. ..++||+..||++ |+.. |+.+.|.. + .... |||+|..|+.+. .+.++|.+.
T Consensus 11 ~~~~~~~~~r~~ha-~Lf~G~~G~GK~~~A~~~-------A~~llC~~-~-~~~~--~Cg~C~sC~~~~~g~HPD~~~i~ 78 (328)
T PRK05707 11 LWQQLAGRGRHPHA-YLLHGPAGIGKRALAERL-------AAALLCEA-P-QGGG--ACGSCKGCQLLRAGSHPDNFVLE 78 (328)
T ss_pred HHHHHHHCCCccee-eeeECCCCCCHHHHHHHH-------HHHHcCCC-C-CCCC--CCCCCHHHHHHhcCCCCCEEEEe
Confidence 46778889999883 3578988447764 5433 33344310 0 1122 556665555554 466777774
Q ss_pred hhccc-cccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEE
Q psy1686 132 VINSR-THGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVIT 209 (448)
Q Consensus 132 ~~nsr-~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Il 209 (448)
-..+. .-++ ++||+.+.... ....+| .++|++|||+|+++.+++|+|+|++|||+.. +||+
T Consensus 79 ~~~~~~~i~i------------d~iR~l~~~~~-~~~~~~----~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL 141 (328)
T PRK05707 79 PEEADKTIKV------------DQVRELVSFVV-QTAQLG----GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLL 141 (328)
T ss_pred ccCCCCCCCH------------HHHHHHHHHHh-hccccC----CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 43221 1122 88998665543 222334 3589999999999999999999999999876 7777
Q ss_pred EecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
.|+. +..++++++|||++++|.|++.+++.+.|..+. .+++....++.++ +|++..|+.+++
T Consensus 142 ~t~~------------~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la-~Gsp~~A~~l~~ 205 (328)
T PRK05707 142 ISHQ------------PSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESDERERIELLTLA-GGSPLRALQLHE 205 (328)
T ss_pred EECC------------hhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCChHHHHHHHHHc-CCCHHHHHHHHC
Confidence 7777 777999999999999999999999999998653 6666667788899 999999998865
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=158.52 Aligned_cols=131 Identities=22% Similarity=0.216 Sum_probs=107.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---------cCceeEeeccccCCCCCCChhhhhhcc-cccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---------NRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---------~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~py 245 (448)
+.+|||||+|+++.++++.|..++++.-..+++.+. -...++|++|+.+ ..++++++|||. ++.|.||
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~--~~l~~~l~sR~~~~~~l~~l 159 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA--GMLTSPLRDRFGIILRLEFY 159 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc--cccCHHHHhhcceEEEeCCC
Confidence 479999999999999999999999876654433211 0125677777654 468899999994 6899999
Q ss_pred CHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 246 s~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+.+|+.++++.++ ++++++++|++.+ +|++|.++++++.+..+|...+...|+.+++++++..
T Consensus 160 ~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 160 TVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9999999999766 9999999999999 9999999999999877765445567999999999876
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-17 Score=164.97 Aligned_cols=192 Identities=10% Similarity=0.073 Sum_probs=135.3
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|.+++++||++|- ..|.||+..||++ |+..+ +...|. ....-.+|..|..|+.-.-..+.++|.++-
T Consensus 12 ~~l~~~~~~~rl~HA-~Lf~G~~G~GK~~lA~~~A-------~~llC~--~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 12 QQITQAFQQGLGHHA-LLFKADSGLGTEQLIRALA-------QWLMCQ--TPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHcCCccee-EEeECCCCCCHHHHHHHHH-------HHHcCC--CCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 458899999999982 3478887337754 44332 222220 001122444444444444455888888753
Q ss_pred hccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEe
Q psy1686 133 INSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITAT 211 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT 211 (448)
...+.- ++ ++||+.++.. .....+|+ ++|++||++|+++.+++|+|+|++||||.. +||+.|
T Consensus 82 ~~~~~I-------~i-----d~iR~l~~~~-~~~~~~g~----~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 82 IDNKDI-------GV-----DQVREINEKV-SQHAQQGG----NKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred ccCCCC-------CH-----HHHHHHHHHH-hhccccCC----ceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 222212 22 8999765543 33334453 599999999999999999999999999987 777777
Q ss_pred cCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 212 NRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 212 ~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
+. +..++++++|||++++|.|++.+++.+.|..++ .+++....+++++ +|++-.|+.+++.
T Consensus 145 ~~------------~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~-~g~p~~A~~~~~~ 206 (325)
T PRK06871 145 DL------------SAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRIN-YGRPLLALTFLEQ 206 (325)
T ss_pred CC------------hHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHc-CCCHHHHHHHhhC
Confidence 76 788999999999999999999999999998654 5554566777888 8999999888754
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=163.42 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=133.8
Q ss_pred ccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccce
Q psy1686 40 SQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKR 118 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~ 118 (448)
|+++|||+++.+. |.+++++|+++|.+ .++||+..||++ |+..+ +.+-| . . |.|
T Consensus 3 ~~~i~g~~~~~~~---l~~~~~~~~~~ha~-Lf~G~~G~Gk~~la~~~a-------~~l~c---~-~-----~~~----- 57 (313)
T PRK05564 3 FHTIIGHENIKNR---IKNSIIKNRFSHAH-IIVGEDGIGKSLLAKEIA-------LKILG---K-S-----QQR----- 57 (313)
T ss_pred hhhccCcHHHHHH---HHHHHHcCCCCceE-EeECCCCCCHHHHHHHHH-------HHHcC---C-C-----CCC-----
Confidence 7899999999755 89999999999832 688998448765 44221 11111 0 0 001
Q ss_pred eeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHh
Q psy1686 119 KTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRA 198 (448)
Q Consensus 119 kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~ 198 (448)
.+.++++++..+ |....+ ++||+.+... .....+| .++|++||++|+++.+++|+|+|+
T Consensus 58 ----~h~D~~~~~~~~-----------~~~i~v-~~ir~~~~~~-~~~p~~~----~~kv~iI~~ad~m~~~a~naLLK~ 116 (313)
T PRK05564 58 ----EYVDIIEFKPIN-----------KKSIGV-DDIRNIIEEV-NKKPYEG----DKKVIIIYNSEKMTEQAQNAFLKT 116 (313)
T ss_pred ----CCCCeEEecccc-----------CCCCCH-HHHHHHHHHH-hcCcccC----CceEEEEechhhcCHHHHHHHHHH
Confidence 122222222211 111111 7888877644 2222333 369999999999999999999999
Q ss_pred hhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--CCHHHHHHHHHHcCCCC
Q psy1686 199 LESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIALDTS 275 (448)
Q Consensus 199 lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra--i~deal~~La~~a~~Gd 275 (448)
+|+||.. +||+.|+. +..++++++|||++++|.+++.+++.+.|..+. +++++++.++.++ +|+
T Consensus 117 LEepp~~t~~il~~~~------------~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~g~ 183 (313)
T PRK05564 117 IEEPPKGVFIILLCEN------------LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFS-DGI 183 (313)
T ss_pred hcCCCCCeEEEEEeCC------------hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHc-CCC
Confidence 9999876 66666655 678999999999999999999999999998663 8899999999999 899
Q ss_pred HHHHHHHHHH
Q psy1686 276 LRYAIQLITT 285 (448)
Q Consensus 276 ~R~AL~lLe~ 285 (448)
...|+..+..
T Consensus 184 ~~~a~~~~~~ 193 (313)
T PRK05564 184 PGKVEKFIED 193 (313)
T ss_pred HHHHHHHhcc
Confidence 9988776543
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=152.81 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=127.3
Q ss_pred HHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeee--ccchhhhh
Q psy1686 55 VVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVH--TVTLHEID 131 (448)
Q Consensus 55 ~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~--~vtLheiD 131 (448)
.|+++|++|++++ ...++|||..|||+ ++..+. .+.+ ....... |+|.|..|+.+.+ +.+++.++
T Consensus 3 ~l~~~i~~~~~~~-~~L~~G~~G~gkt~~a~~~~~-------~l~~--~~~~~~~--~c~~~~~c~~~~~~~~~d~~~~~ 70 (188)
T TIGR00678 3 QLKRALEKGRLAH-AYLFAGPEGVGKELLALALAK-------ALLC--EQPGGGE--PCGECPSCRLIEAGNHPDLHRLE 70 (188)
T ss_pred HHHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHH-------HHcC--CCCCCCC--CCCCCHHHHHHHcCCCCcEEEec
Confidence 4789999999976 35689999558875 442211 1111 0011223 3455555555432 33444443
Q ss_pred hhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 132 VINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 132 ~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
..+.. .+. +++|+.++.+. .....+ .+.|+||||+|+|+.++++.|++.+|+++.. .||+.
T Consensus 71 ~~~~~--------~~~-----~~i~~i~~~~~-~~~~~~----~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 71 PEGQS--------IKV-----DQVRELVEFLS-RTPQES----GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cccCc--------CCH-----HHHHHHHHHHc-cCcccC----CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 32211 111 78887665542 222233 3589999999999999999999999997654 66666
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYA 279 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~A 279 (448)
|+. +.++++++.|||.++.|.|++.+++.++|+.+.++++++++|++.+ +||+|.|
T Consensus 133 ~~~------------~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~i~~~~-~g~~r~~ 188 (188)
T TIGR00678 133 TPS------------PEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQGISEEAAELLLALA-GGSPGAA 188 (188)
T ss_pred ECC------------hHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcCCCHHHHHHHHHHc-CCCcccC
Confidence 665 4679999999999999999999999999986669999999999999 9999976
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=156.38 Aligned_cols=232 Identities=16% Similarity=0.144 Sum_probs=147.4
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLR 109 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~ 109 (448)
.+..||++ +++++||++++.. |.+++++++.++ +.++||+..|||+ ++.... .+.+ .+....++.
T Consensus 6 ~~ky~P~~-~~~~~g~~~~~~~---L~~~~~~~~~~~--lll~Gp~GtGKT~la~~~~~-------~l~~-~~~~~~~~~ 71 (337)
T PRK12402 6 TEKYRPAL-LEDILGQDEVVER---LSRAVDSPNLPH--LLVQGPPGSGKTAAVRALAR-------ELYG-DPWENNFTE 71 (337)
T ss_pred HHhhCCCc-HHHhcCCHHHHHH---HHHHHhCCCCce--EEEECCCCCCHHHHHHHHHH-------HhcC-cccccceEE
Confidence 46789999 7999999998755 788888888766 7899999558875 442211 1110 000012233
Q ss_pred cCCCcccce-eeeeeccchhhhhhhccccccchhhhcCCCCC-CchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 110 CPDGELQKR-KTVVHTVTLHEIDVINSRTHGFLALFAGDTGE-ITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 110 ~p~ge~~k~-kei~~~vtLheiD~~nsr~~g~~a~~~~~~~e-I~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
++..+.+.. +.... -| -+... +.... +..+. ..+.+|+.+.... ......-.++++||||+|.|
T Consensus 72 i~~~~~~~~~~~~~~---~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vlilDe~~~l 137 (337)
T PRK12402 72 FNVADFFDQGKKYLV---ED-PRFAH-----FLGTD-KRIRSSKIDNFKHVLKEYA----SYRPLSADYKTILLDNAEAL 137 (337)
T ss_pred echhhhhhcchhhhh---cC-cchhh-----hhhhh-hhhccchHHHHHHHHHHHH----hcCCCCCCCcEEEEeCcccC
Confidence 222222100 00000 00 00000 00000 00000 0133444333221 11111113579999999999
Q ss_pred CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CC
Q psy1686 188 DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQ 260 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~ 260 (448)
+.+.++.|.+.+|+++.. .||++++. +..++++|.|||..+.|.|++.+++.++|+..+ ++
T Consensus 138 ~~~~~~~L~~~le~~~~~~~~Il~~~~------------~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (337)
T PRK12402 138 REDAQQALRRIMEQYSRTCRFIIATRQ------------PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD 205 (337)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeCC------------hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999987653 56666554 345778999999999999999999999998654 89
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 261 TDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 261 deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++|++.+ .||+|.+++.|+.++. +...||.++|++++.
T Consensus 206 ~~al~~l~~~~-~gdlr~l~~~l~~~~~-----~~~~It~~~v~~~~~ 247 (337)
T PRK12402 206 DDGLELIAYYA-GGDLRKAILTLQTAAL-----AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHhC
Confidence 99999999999 9999999999986541 223799999998764
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=178.80 Aligned_cols=135 Identities=24% Similarity=0.316 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
++||+.|..........+. .++|+||||+|+|+.++|++|+|++|+|+.. .||++||. ++++++
T Consensus 611 d~IR~iIk~~a~~~~~~~~---~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~------------~~kIi~ 675 (846)
T PRK04132 611 NVIREKVKEFARTKPIGGA---SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIE 675 (846)
T ss_pred HHHHHHHHHHHhcCCcCCC---CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCC------------hhhCch
Confidence 7899888765432211111 2589999999999999999999999998765 78888887 899999
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 232 DLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 232 ~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
+|+|||++|+|+|++.+++.++|+..| ++++++..|++.| +||+|.|+|+|+.++.. ...||.++|..
T Consensus 676 tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s-~GDlR~AIn~Lq~~~~~-----~~~It~~~V~~ 749 (846)
T PRK04132 676 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA-EGDMRRAINILQAAAAL-----DDKITDENVFL 749 (846)
T ss_pred HHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 999999999999999999999888544 7899999999999 99999999999987532 23688888877
Q ss_pred HHH
Q psy1686 306 VYA 308 (448)
Q Consensus 306 ~~~ 308 (448)
+.+
T Consensus 750 ~~~ 752 (846)
T PRK04132 750 VAS 752 (846)
T ss_pred HhC
Confidence 664
|
|
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=153.80 Aligned_cols=228 Identities=18% Similarity=0.172 Sum_probs=164.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
-+|.-+..||.. ++++||-+.... -|.-+.++|.+++ ++++|||..|||| ..+. |+++ +|+
T Consensus 14 ~l~wVeKYrP~~-l~dIVGNe~tv~---rl~via~~gnmP~--liisGpPG~GKTTsi~~L-------Ar~L---LG~-- 75 (333)
T KOG0991|consen 14 QLPWVEKYRPSV-LQDIVGNEDTVE---RLSVIAKEGNMPN--LIISGPPGTGKTTSILCL-------AREL---LGD-- 75 (333)
T ss_pred cchHHHhhCchH-HHHhhCCHHHHH---HHHHHHHcCCCCc--eEeeCCCCCchhhHHHHH-------HHHH---hCh--
Confidence 345678899998 799999999864 4677788999999 9999999558876 1111 2221 221
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.|-. |++.+.+++...| |-+|..|..-.++.+---+. ..+|+++||++
T Consensus 76 ~~ke-----------------------------~vLELNASdeRGI-DvVRn~IK~FAQ~kv~lp~g--rhKIiILDEAD 123 (333)
T KOG0991|consen 76 SYKE-----------------------------AVLELNASDERGI-DVVRNKIKMFAQKKVTLPPG--RHKIIILDEAD 123 (333)
T ss_pred hhhh-----------------------------HhhhccCcccccc-HHHHHHHHHHHHhhccCCCC--ceeEEEeeccc
Confidence 2211 2444444444455 88998887544333222111 24899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
..+..+|.+|.|++|=+... .|++|.|. +-+|..++.|||.+++|..+++.++-+.|...+
T Consensus 124 SMT~gAQQAlRRtMEiyS~ttRFalaCN~------------s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~ 191 (333)
T KOG0991|consen 124 SMTAGAQQALRRTMEIYSNTTRFALACNQ------------SEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVN 191 (333)
T ss_pred hhhhHHHHHHHHHHHHHcccchhhhhhcc------------hhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999987764 78888887 788999999999999999999999877666443
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH------------HHHHHHhc--chhHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI------------RKVYALFL--DEGRSTQYLRE 322 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V------------~~~~~lf~--D~~~s~~~L~~ 322 (448)
|++++|+.|...| +||+|.|||-|..... +-..|+.|.| ++++.-.. +...+++.|.+
T Consensus 192 yt~dgLeaiifta-~GDMRQalNnLQst~~-----g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~ 263 (333)
T KOG0991|consen 192 YTDDGLEAIIFTA-QGDMRQALNNLQSTVN-----GFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAE 263 (333)
T ss_pred CCcchHHHhhhhc-cchHHHHHHHHHHHhc-----cccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999 9999999999985532 2234444444 44444322 45677777753
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=162.08 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=137.3
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|.+++++||++| -..|.||+..||++ |.-. |+..-|. .+ ..-.+|..|..|+.-+-..+.|+|.+.-
T Consensus 12 ~~l~~~~~~~rl~H-A~Lf~G~~G~Gk~~lA~~~-------A~~LlC~-~~-~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 12 EQLVGSYQAGRGHH-ALLIQALPGMGDDALIYAL-------SRWLMCQ-QP-QGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHcCCcce-EEeeECCCCCCHHHHHHHH-------HHHHcCC-CC-CCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 34789999999998 23478888447754 4322 2222220 00 1112444444444444556888887743
Q ss_pred hccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEe
Q psy1686 133 INSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITAT 211 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT 211 (448)
-...+ .+ ++ ++||+.+... .....+| .++|++||++++++.++.|+|+|++||||.. +||+.|
T Consensus 82 ~~~~~-~I-----~i-----dqiR~l~~~~-~~~~~~g----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 82 EKGKS-SL-----GV-----DAVREVTEKL-YEHARLG----GAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred ccccc-cC-----CH-----HHHHHHHHHH-hhccccC----CceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 21110 01 12 7888866554 3333444 3599999999999999999999999999887 888888
Q ss_pred cCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 212 NRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 212 ~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
+. +..+++|++|||+.+.|.|.+.+++.+.|..+. ++++....+++++ +|++..|+.+++.
T Consensus 146 ~~------------~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la-~G~~~~Al~l~~~ 207 (334)
T PRK07993 146 RE------------PARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMSQDALLAALRLS-AGAPGAALALLQP 207 (334)
T ss_pred CC------------hhhChHHHHhccccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHc-CCCHHHHHHHhcC
Confidence 87 888999999999999999999999999997553 8888788889999 9999999988763
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=150.15 Aligned_cols=205 Identities=15% Similarity=0.107 Sum_probs=141.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
-++..+..||++ ++++|||++++.. +...+++|+++++ ..++||+..|||+ ++.... ..+ .
T Consensus 8 ~~~w~~kyrP~~-~~~~~~~~~~~~~---l~~~~~~~~~~~~-lll~G~~G~GKT~la~~l~~-------~~~----~-- 69 (316)
T PHA02544 8 EFMWEQKYRPST-IDECILPAADKET---FKSIVKKGRIPNM-LLHSPSPGTGKTTVAKALCN-------EVG----A-- 69 (316)
T ss_pred CCcceeccCCCc-HHHhcCcHHHHHH---HHHHHhcCCCCeE-EEeeCcCCCCHHHHHHHHHH-------HhC----c--
Confidence 356788999998 8999999999764 8888999998872 2348998558875 442211 111 0
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.+ +++++.. +. .+.+|+.+..........+ .++|+||||+|
T Consensus 70 ~~--------------------~~i~~~~--------------~~-~~~i~~~l~~~~~~~~~~~----~~~vliiDe~d 110 (316)
T PHA02544 70 EV--------------------LFVNGSD--------------CR-IDFVRNRLTRFASTVSLTG----GGKVIIIDEFD 110 (316)
T ss_pred cc--------------------eEeccCc--------------cc-HHHHHHHHHHHHHhhcccC----CCeEEEEECcc
Confidence 11 1121111 01 1455655544322221112 25899999999
Q ss_pred CC-CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHH-------
Q psy1686 186 ML-DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI------- 256 (448)
Q Consensus 186 ~L-~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~------- 256 (448)
++ +.++++.|.+.+|+++.. .||++++. +.+++++++|||.++.|.+++.++..++++.
T Consensus 111 ~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~------------~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~ 178 (316)
T PHA02544 111 RLGLADAQRHLRSFMEAYSKNCSFIITANN------------KNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKG 178 (316)
T ss_pred cccCHHHHHHHHHHHHhcCCCceEEEEcCC------------hhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99 778889998889987665 56666654 5679999999999999989888876544331
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.+ ++++++..+++.+ .||.|.+++.|+... . ...|+.+++....
T Consensus 179 ~~~~~~~~i~~~al~~l~~~~-~~d~r~~l~~l~~~~--~----~~~i~~~~l~~~~ 228 (316)
T PHA02544 179 ILEAEGVEVDMKVLAALVKKN-FPDFRRTINELQRYA--S----TGKIDAGILSEVT 228 (316)
T ss_pred HHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHH--c----cCCCCHHHHHHhh
Confidence 11 8999999999998 899999999999553 1 2368877766543
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-15 Score=144.76 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=138.1
Q ss_pred CCCCCCCCCccccccccc-cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMV-GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~V-GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
=|+|+-.+.|...|++|+ | .+ ..+...++++.... .+|++.++||+..|||. +...... ... .|..
T Consensus 8 Ql~l~~~~~~~~~fd~f~~~-~n-~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~-------~~~-~~~~ 75 (235)
T PRK08084 8 QLSLPLYLPDDETFASFYPG-DN-DSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAE-------LSQ-RGRA 75 (235)
T ss_pred ceecCCCCCCcCCccccccC-cc-HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH-------HHh-CCCe
Confidence 478887788888899999 5 22 33556677776544 23568899998448875 3311110 000 0111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
..|++ +.+. . ... .++++.+. . ..+||||||
T Consensus 76 v~y~~-----------------~~~~---~----------~~~-----~~~~~~~~----------~----~dlliiDdi 106 (235)
T PRK08084 76 VGYVP-----------------LDKR---A----------WFV-----PEVLEGME----------Q----LSLVCIDNI 106 (235)
T ss_pred EEEEE-----------------HHHH---h----------hhh-----HHHHHHhh----------h----CCEEEEeCh
Confidence 23444 1110 0 000 23332221 1 268999999
Q ss_pred CCCCHH------HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC---CChhhhhhc---ccccCCCCCHHHHHH
Q psy1686 185 HMLDIE------CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQA 252 (448)
Q Consensus 185 H~L~~~------~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~---~ii~~~pys~~eI~~ 252 (448)
|++... .|+.+++.+|. +...+|.+++ +||.. +.++|.||| .++.++|++.+++.+
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~-----------g~~~li~ts~-~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILES-----------GRTRLLITGD-RPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHc-----------CCCeEEEeCC-CChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 999643 27888898883 3223333333 56666 578999999 899999999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+|+.++ ++++++++|++.+ +||+|.++++|+.....+. ..++.||.+.+++++.
T Consensus 175 ~l~~~a~~~~~~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~l-~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 175 ALQLRARLRGFELPEDVGRFLLKRL-DREMRTLFMTLDQLDRASI-TAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHc
Confidence 998656 9999999999999 9999999999998643332 2345699999998874
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=163.36 Aligned_cols=247 Identities=17% Similarity=0.212 Sum_probs=153.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCcc-ccccCCCccCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREE-EPDYDGWLADVT 105 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~-a~~~d~~~~~~~ 105 (448)
=++++.+||++ |++++||.++.++ +++++..+...+ +.++||+..|||| +++.....+.. ...+. .+.
T Consensus 142 ~~~~~~~rp~~-~~~iiGqs~~~~~---l~~~ia~~~~~~--vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~----~~~ 211 (615)
T TIGR02903 142 KSAQSLLRPRA-FSEIVGQERAIKA---LLAKVASPFPQH--IILYGPPGVGKTTAARLALEEAKKLKHTPFA----EDA 211 (615)
T ss_pred hHHhhhcCcCc-HHhceeCcHHHHH---HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHhhhhccCCccc----CCC
Confidence 45788899998 7999999999875 566676665544 8899998559987 66542221110 00000 112
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHH----HHhCc-ccccCeEEE
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEW----REEGK-AEIVPGVLF 180 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~----~~~g~-~~i~~~VLf 180 (448)
.|+...+..+. .+..++ .| .++.. ..+...+...+..... ...|. .....++||
T Consensus 212 ~fv~i~~~~l~--------~d~~~i--~~-------~llg~----~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~ 270 (615)
T TIGR02903 212 PFVEVDGTTLR--------WDPREV--TN-------PLLGS----VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLF 270 (615)
T ss_pred CeEEEechhcc--------CCHHHH--hH-------HhcCC----ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEE
Confidence 45543222110 000110 00 01111 1111111111000000 00000 012358999
Q ss_pred EeccCCCCHHHHHHHHHhhhhcCC--------------C-----eEEEEecCceeEeeccccCCCCCCChhhhhhccccc
Q psy1686 181 IDEVHMLDIECFSFLNRALESEMS--------------P-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIP 241 (448)
Q Consensus 181 IDEVH~L~~~~f~~Llk~lEe~~~--------------p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~ 241 (448)
|||+|+|+..+|+.|++.+|+..- | .+--.....+++|++||.+|. .++++|+|||..+.
T Consensus 271 LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l~~aLrSR~~~i~ 349 (615)
T TIGR02903 271 IDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EINPALRSRCAEVF 349 (615)
T ss_pred EeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-ccCHHHHhceeEEE
Confidence 999999999999999999997320 0 000011223688888888754 68999999999999
Q ss_pred CCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh--------hhCCCcccHHHHHHHH
Q psy1686 242 TQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR--------RRKATEICMEDIRKVY 307 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~--------~~~~~~It~e~V~~~~ 307 (448)
|.||+.+|+.+|++..+ ++++++++|++++ . +.|+|++.|+.+..++. ..+...|+.++|++++
T Consensus 350 ~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys-~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 350 FEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT-I-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVI 427 (615)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC-C-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHh
Confidence 99999999999999654 8999999999987 3 77999999988865531 1122369999999998
Q ss_pred H
Q psy1686 308 A 308 (448)
Q Consensus 308 ~ 308 (448)
+
T Consensus 428 ~ 428 (615)
T TIGR02903 428 Q 428 (615)
T ss_pred C
Confidence 7
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-15 Score=157.18 Aligned_cols=205 Identities=14% Similarity=0.206 Sum_probs=141.0
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
...+..||++ ++++|||+++... |+++++ .|+. .+.+.++|||..|||+ ++.. |++++.
T Consensus 3 ~W~eKyrP~~-l~dlvg~~~~~~~---l~~~l~~~~~g~~-~~~lLL~GppG~GKTtla~al-------a~el~~----- 65 (482)
T PRK04195 3 PWVEKYRPKT-LSDVVGNEKAKEQ---LREWIESWLKGKP-KKALLLYGPPGVGKTSLAHAL-------ANDYGW----- 65 (482)
T ss_pred CchhhcCCCC-HHHhcCCHHHHHH---HHHHHHHHhcCCC-CCeEEEECCCCCCHHHHHHHH-------HHHcCC-----
Confidence 3457899999 7999999999865 555555 4443 3457899999558875 4433 222221
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+++. +++...+ + .+.++..+..+.......|. .+.|++|||+
T Consensus 66 -~~ie--------------------lnasd~r---------~-----~~~i~~~i~~~~~~~sl~~~---~~kvIiIDEa 107 (482)
T PRK04195 66 -EVIE--------------------LNASDQR---------T-----ADVIERVAGEAATSGSLFGA---RRKLILLDEV 107 (482)
T ss_pred -CEEE--------------------Ecccccc---------c-----HHHHHHHHHHhhccCcccCC---CCeEEEEecC
Confidence 2222 1111111 0 03455444433221111110 3589999999
Q ss_pred CCCCH----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCCh-hhhhhcccccCCCCCHHHHHHHHHHhc-
Q psy1686 185 HMLDI----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPI-DLLDRMVIIPTQPYQDEEIQAILKIRL- 258 (448)
Q Consensus 185 H~L~~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~-~lLSR~~ii~~~pys~~eI~~IL~~Ra- 258 (448)
|.|+. ..++.|++.+++...|+++ .+|. ++.++. ++.+||..+.|.+++.+++..+|+..+
T Consensus 108 D~L~~~~d~~~~~aL~~~l~~~~~~iIl-i~n~------------~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 108 DGIHGNEDRGGARAILELIKKAKQPIIL-TAND------------PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred cccccccchhHHHHHHHHHHcCCCCEEE-eccC------------ccccchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence 99976 6789999999976666544 4454 455655 899999999999999999999988655
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+++++++.|++.+ +||+|.|++.|+.+ + .+...|+.++++.+.
T Consensus 175 ~egi~i~~eaL~~Ia~~s-~GDlR~ain~Lq~~---a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 175 KEGIECDDEALKEIAERS-GGDLRSAINDLQAI---A--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH---h--cCCCCCcHHHHHHhh
Confidence 9999999999999 99999999999862 3 244579999987665
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=152.78 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=136.6
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|..++++||++| -..+.||+..||++ |.-. |+..-| ....+|++|.+|+.-+-..+.|+|.++.
T Consensus 14 ~~l~~~~~~~rl~H-A~Lf~Gp~G~GK~~lA~~l-------A~~LlC-----~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 14 DQTVAALDAGRLGH-GLLICGPEGLGKRAVALAL-------AEHVLA-----SGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred HHHHHHHHcCCcce-eEeeECCCCCCHHHHHHHH-------HHHHhC-----CCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 45789999999998 23478887337754 3322 223332 1223566666666656666788887752
Q ss_pred hccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 133 INSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
.-.. .|- +.+.+|+ ++||+.++.. .....+| .++|++||++|+++.++.|+|+|++|||+.. +||+.
T Consensus 81 ~p~~-~~~-----k~~~~I~idqIR~l~~~~-~~~p~~g----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~ 149 (319)
T PRK08769 81 IPNR-TGD-----KLRTEIVIEQVREISQKL-ALTPQYG----IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLI 149 (319)
T ss_pred CCCc-ccc-----cccccccHHHHHHHHHHH-hhCcccC----CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEE
Confidence 2111 010 0011221 6777655543 2222334 3599999999999999999999999999987 68888
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
++. +..++++++|||++++|.+.+.+++.+.|....++++....++.++ +|++-.|+.+++
T Consensus 150 ~~~------------~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~-~G~p~~A~~~~~ 210 (319)
T PRK08769 150 SAQ------------PARLPATIRSRCQRLEFKLPPAHEALAWLLAQGVSERAAQEALDAA-RGHPGLAAQWLR 210 (319)
T ss_pred ECC------------hhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHc-CCCHHHHHHHhc
Confidence 887 7889999999999999999999999999985447776666678888 999999988774
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=152.02 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDV 132 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~ 132 (448)
.-|.+++++||++|- ..|.||+..||++ |+.. |+..-| ......+|..|..|+.-+-..+.|+|.++-
T Consensus 13 ~~l~~~~~~~rl~hA-~L~~G~~G~Gk~~lA~~~-------a~~llC---~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 13 QNWKAGLDAGRIPGA-LLLQSDEGLGVESLVELF-------SRALLC---QNYQSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHcCCccee-EeeECCCCCCHHHHHHHH-------HHHHcC---CCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 347889999999982 3467877347754 4433 222333 111123444444444444555788887754
Q ss_pred hccccccchhhhcCCCCCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 133 INSRTHGFLALFAGDTGEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 133 ~nsr~~g~~a~~~~~~~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
.... ..|+ ++||+.+... ......| .++|++||++|+++.++.|+|+|++||||.. +||+.
T Consensus 82 ~~~~------------~~I~vdqiR~l~~~~-~~~~~~~----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (319)
T PRK06090 82 EKEG------------KSITVEQIRQCNRLA-QESSQLN----GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLV 144 (319)
T ss_pred CcCC------------CcCCHHHHHHHHHHH-hhCcccC----CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 3211 1121 7888754332 2222333 3589999999999999999999999999986 78888
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
|+. +..+++|++|||+.+.|.|.+.+++.+.|....++. ...+++++ +|++..|+++++
T Consensus 145 t~~------------~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~~--~~~~l~l~-~G~p~~A~~~~~ 203 (319)
T PRK06090 145 THN------------QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGITV--PAYALKLN-MGSPLKTLAMMK 203 (319)
T ss_pred ECC------------hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCch--HHHHHHHc-CCCHHHHHHHhC
Confidence 887 788999999999999999999999999998554553 24567888 999999988865
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-15 Score=148.08 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=132.7
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcc-hhhhhhhccCccccccCCCccCCCCccccCCCcccceeeeee
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQK-VKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVH 123 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKt-t~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~ 123 (448)
+|..+ ...|.+++++||++|-+ .|+|+. ||+ +|+.. |+..-| .......+|..|..|++-+-..
T Consensus 6 ~q~~~---~~~L~~~~~~~rl~hAy-Lf~G~~--G~~~~A~~~-------A~~llC--~~~~~~~~Cg~C~~C~~i~~~~ 70 (290)
T PRK07276 6 KQPKV---FQRFQTILEQDRLNHAY-LFSGDF--ASFEMALFL-------AQSLFC--EQKEGVLPCGHCRSCRLIEQGE 70 (290)
T ss_pred HHHHH---HHHHHHHHHcCCcceee-eeeCCc--cHHHHHHHH-------HHHHcC--CCCCCCCCCCCCHHHHHHhcCC
Confidence 34444 46699999999999833 467853 553 34433 222222 1111223444444444444556
Q ss_pred ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcC
Q psy1686 124 TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEM 203 (448)
Q Consensus 124 ~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~ 203 (448)
+.|+|.++-.+.. + +. ++||+.+...- ....+| .++|++||++|+++.++.|+|+|++|||+
T Consensus 71 HPD~~~i~p~~~~---I-----~i-----dqIR~l~~~~~-~~p~~~----~~kV~II~~ad~m~~~AaNaLLKtLEEPp 132 (290)
T PRK07276 71 FSDVTVIEPQGQV---I-----KT-----DTIRELVKNFS-QSGYEG----KQQVFIIKDADKMHVNAANSLLKVIEEPQ 132 (290)
T ss_pred CCCeeeecCCCCc---C-----CH-----HHHHHHHHHHh-hCcccC----CcEEEEeehhhhcCHHHHHHHHHHhcCCC
Confidence 8888887543210 1 22 88987665542 223334 45999999999999999999999999999
Q ss_pred CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHH
Q psy1686 204 SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQL 282 (448)
Q Consensus 204 ~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~l 282 (448)
.. +||+.|+. +..++++++|||++++|.+ +.+++.++|....++++...+++..+ |++..|+.+
T Consensus 133 ~~t~~iL~t~~------------~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~g~~~~~a~~la~~~--~s~~~A~~l 197 (290)
T PRK07276 133 SEIYIFLLTND------------ENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQKGLLKTQAELLAKLA--QSTSEAEKL 197 (290)
T ss_pred CCeEEEEEECC------------hhhCchHHHHcceeeeCCC-cHHHHHHHHHHcCCChHHHHHHHHHC--CCHHHHHHH
Confidence 86 78888877 7889999999999999988 88999999984447777667777776 478888888
Q ss_pred HH
Q psy1686 283 IT 284 (448)
Q Consensus 283 Le 284 (448)
++
T Consensus 198 ~~ 199 (290)
T PRK07276 198 AQ 199 (290)
T ss_pred hC
Confidence 63
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-15 Score=139.85 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=97.2
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeee-
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV- 122 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~- 122 (448)
||+.+. ..|.+++++|+++| ..+++||+..||++ |+.. |+..-+ +..... |+|+|..|+.+.
T Consensus 1 gq~~~~---~~L~~~~~~~~l~h-a~L~~G~~g~gk~~~a~~~-------a~~ll~---~~~~~~--~c~~c~~c~~~~~ 64 (162)
T PF13177_consen 1 GQEEII---ELLKNLIKSGRLPH-ALLFHGPSGSGKKTLALAF-------ARALLC---SNPNED--PCGECRSCRRIEE 64 (162)
T ss_dssp S-HHHH---HHHHHHHHCTC--S-EEEEECSTTSSHHHHHHHH-------HHHHC----TT-CTT----SSSHHHHHHHT
T ss_pred CcHHHH---HHHHHHHHcCCcce-eEEEECCCCCCHHHHHHHH-------HHHHcC---CCCCCC--CCCCCHHHHHHHh
Confidence 888885 55999999999998 23788998447754 3322 111111 111112 455555554443
Q ss_pred -eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhh
Q psy1686 123 -HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALES 201 (448)
Q Consensus 123 -~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe 201 (448)
.+.+++.++-.+.+.+ + +. +++|+.++.. .....+-.++|++|||+|.++.+++|+|+|++||
T Consensus 65 ~~~~d~~~~~~~~~~~~-i-----~i-----~~ir~i~~~~-----~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe 128 (162)
T PF13177_consen 65 GNHPDFIIIKPDKKKKS-I-----KI-----DQIREIIEFL-----SLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE 128 (162)
T ss_dssp T-CTTEEEEETTTSSSS-B-----SH-----HHHHHHHHHC-----TSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS
T ss_pred ccCcceEEEecccccch-h-----hH-----HHHHHHHHHH-----HHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC
Confidence 4677777754443211 1 11 7888555432 2222222469999999999999999999999999
Q ss_pred cCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCC
Q psy1686 202 EMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQ 246 (448)
Q Consensus 202 ~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys 246 (448)
|+.. +|||.|+. +..|+++++|||++++|+|++
T Consensus 129 pp~~~~fiL~t~~------------~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 129 PPENTYFILITNN------------PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp TTTTEEEEEEES-------------GGGS-HHHHTTSEEEEE----
T ss_pred CCCCEEEEEEECC------------hHHChHHHHhhceEEecCCCC
Confidence 9987 78888887 788999999999999999875
|
... |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=142.25 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=84.2
Q ss_pred CeEEEEeccCCCC--------HHHHHHHHHhhhhcCCC-eEEEEecCceeEeecccc-CCCCCCChhhhhhc-ccccCCC
Q psy1686 176 PGVLFIDEVHMLD--------IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAY-SSPHGIPIDLLDRM-VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~--------~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Tte-np~~~Ip~~lLSR~-~ii~~~p 244 (448)
.+||||||+|+|. .++++.|++.+|+...+ ++|+++. +++ ++.+.+++++.||| ..+.|++
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~--------~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY--------SDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC--------cchhHHHHhcChHHHhccceEEEECC
Confidence 3799999999975 57899999999986554 3333322 233 46677899999999 5799999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKIA---------LDTSLRYAIQLITTASVV 289 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~a---------~~Gd~R~AL~lLe~a~~~ 289 (448)
|+.+|+.+|++..+ ++++++++|++.. ..||+|.+.|+++.|...
T Consensus 178 ~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 178 YTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999998654 9999999986541 258999999999998654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=156.67 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=111.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhcc--cccCCCCCHHHHHHH
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMV--IIPTQPYQDEEIQAI 253 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~--ii~~~pys~~eI~~I 253 (448)
.||+|||||+|....+++|+...+-+.. ....+++|+.++ ..-+..+.+.+.|||. .+.|+||+.+||.+|
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~------s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dI 944 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTK------INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKI 944 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhc------cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHH
Confidence 6899999999987666777766663321 123345555553 2223345568889986 489999999999999
Q ss_pred HHHhc------CCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-ch-hHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIA--LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-DE-GRSTQYLREH 323 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a--~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D~-~~s~~~L~~~ 323 (448)
|+.|+ ++++|++++|+.+ ..||+|.||++|+.|+..+ ++..|+.++|+++..... +. .++++.|..|
T Consensus 945 Lk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~srI~e~IktLPlH 1021 (1164)
T PTZ00112 945 IKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDSPLTNAINYLPWP 1021 (1164)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhhhHHHHHHcCCHH
Confidence 99887 8999999999943 2799999999999998753 345899999999987433 33 6788999999
Q ss_pred Hhhhhhhhc
Q psy1686 324 QNEYMFDST 332 (448)
Q Consensus 324 ~~~~l~~~~ 332 (448)
++++|+.-+
T Consensus 1022 qKLVLlALI 1030 (1164)
T PTZ00112 1022 FKMFLTCLI 1030 (1164)
T ss_pred HHHHHHHHH
Confidence 999988543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-15 Score=162.72 Aligned_cols=225 Identities=20% Similarity=0.240 Sum_probs=156.6
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh---ccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA---TGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~---~gk~~a~~~d~~~~ 102 (448)
|.+|.+.+||.. ++.+|||++..+. +.+++..++..+ ++++|||..|||+ ++..+. .+.+...-.+
T Consensus 169 ~~~l~~~~r~~~-l~~~igr~~ei~~---~~~~L~~~~~~n--~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~---- 238 (731)
T TIGR02639 169 TVDLTEKAKNGK-IDPLIGREDELER---TIQVLCRRKKNN--PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN---- 238 (731)
T ss_pred hhhHHHHHhcCC-CCcccCcHHHHHH---HHHHHhcCCCCc--eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC----
Confidence 668888899998 7999999999763 446666777778 6799999558876 331111 1111000000
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
.++. .+| +.++.+|. .+|....+++.++++.. . .+.|||
T Consensus 239 --~~~~--------------------~~~--------~~~l~a~~~~~g~~e~~l~~i~~~~~~----~-----~~~ILf 279 (731)
T TIGR02639 239 --AKIY--------------------SLD--------MGSLLAGTKYRGDFEERLKAVVSEIEK----E-----PNAILF 279 (731)
T ss_pred --CeEE--------------------Eec--------HHHHhhhccccchHHHHHHHHHHHHhc----c-----CCeEEE
Confidence 0111 122 22333332 24455566666655421 1 258999
Q ss_pred EeccCCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHH
Q psy1686 181 IDEVHMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDE 248 (448)
Q Consensus 181 IDEVH~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~ 248 (448)
|||+|+|. .++.+.|.+.++ ++.+.+|++||+ ||++.+.++|.+||..|.+++++.+
T Consensus 280 iDEih~l~~~g~~~~~~~~~~~~L~~~l~-----------~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~ 348 (731)
T TIGR02639 280 IDEIHTIVGAGATSGGSMDASNLLKPALS-----------SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIE 348 (731)
T ss_pred EecHHHHhccCCCCCccHHHHHHHHHHHh-----------CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHH
Confidence 99999994 457888888887 578899999996 8999999999999999999999999
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhhhh----CCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL----------MQTDGLRVLTKIALD-----TSLRYAIQLITTASVVCRRR----KATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra----------i~deal~~La~~a~~-----Gd~R~AL~lLe~a~~~a~~~----~~~~It~e~V~~~~~l 309 (448)
+..+||+... |+++++..++++|.. .=++.|+.+|+.|.....-. ....|+.++|..+++.
T Consensus 349 ~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 349 ETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred HHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 9999998311 899999999999722 23889999999876532211 1345999999999875
Q ss_pred hc
Q psy1686 310 FL 311 (448)
Q Consensus 310 f~ 311 (448)
+.
T Consensus 429 ~t 430 (731)
T TIGR02639 429 MA 430 (731)
T ss_pred Hh
Confidence 43
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=132.59 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred eEEEEeccCCCC-HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc---cccCCCCCHHHHHH
Q psy1686 177 GVLFIDEVHMLD-IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV---IIPTQPYQDEEIQA 252 (448)
Q Consensus 177 ~VLfIDEVH~L~-~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~---ii~~~pys~~eI~~ 252 (448)
.+|+|||||.+. ...|..+|...| ++..++|.+++++|.+.+ ++|+||+. ++.++|++.+++..
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e-----------~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~ 154 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE-----------KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh-----------cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHH
Confidence 789999999985 467777788888 477788999999999988 89999998 99999999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+++.++ ++++++++|++.+ +||+|.++++|+.....+.. .++.||.+.+++++
T Consensus 155 ~l~k~~~~~~l~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 155 LIFKHFSISSVTISRQIIDFLLVNL-PREYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 988554 9999999999999 99999999999987544433 33569999999875
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-14 Score=134.93 Aligned_cols=209 Identities=12% Similarity=0.129 Sum_probs=132.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
|+|+-..+|...|++||||.+...+....+.+. . ..+|++.++||+..|||. +....+ ++-. -+....
T Consensus 3 l~l~~~~~~~~~fd~f~~~~~~~~~~~~~~~~~-~--~~~~~l~l~G~~G~GKThL~~ai~~-------~~~~-~~~~~~ 71 (229)
T PRK06893 3 LPLPIHQIDDETLDNFYADNNLLLLDSLRKNFI-D--LQQPFFYIWGGKSSGKSHLLKAVSN-------HYLL-NQRTAI 71 (229)
T ss_pred cccCCCCCCcccccccccCChHHHHHHHHHHhh-c--cCCCeEEEECCCCCCHHHHHHHHHH-------HHHH-cCCCeE
Confidence 677777787777999999998876655555442 2 345878899998548874 331111 0000 001123
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|++ +.+.+. + ..++ + ..+ . ...+|||||+|.
T Consensus 72 y~~-----------------~~~~~~-------~-----------~~~~---~----~~~---~----~~dlLilDDi~~ 102 (229)
T PRK06893 72 YIP-----------------LSKSQY-------F-----------SPAV---L----ENL---E----QQDLVCLDDLQA 102 (229)
T ss_pred Eee-----------------HHHhhh-------h-----------hHHH---H----hhc---c----cCCEEEEeChhh
Confidence 444 111000 0 0111 1 111 1 237999999999
Q ss_pred CCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC-CChhhhhhcc---cccCCCCCHHHHHHHHHH
Q psy1686 187 LDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG-IPIDLLDRMV---IIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 187 L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~-Ip~~lLSR~~---ii~~~pys~~eI~~IL~~ 256 (448)
+.. ..|+.+++..+. -.++++++++ +..+... ..+++.||+. ++++++++.++..+||+.
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~-~~~illits~---------~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQ-GKTLLLISAD---------CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHc-CCcEEEEeCC---------CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 842 345666666653 1222222222 2111111 2379999996 999999999999999996
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++ ++++++++|++.+ +||+|.++++|+.....+. ..++.||.+.|++++.
T Consensus 173 ~a~~~~l~l~~~v~~~L~~~~-~~d~r~l~~~l~~l~~~~~-~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 173 NAYQRGIELSDEVANFLLKRL-DRDMHTLFDALDLLDKASL-QAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHhc
Confidence 66 9999999999999 9999999999998743332 2234799999998764
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-14 Score=142.72 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=111.8
Q ss_pred CeEEEEeccCCCC----HHHHHHHHHhhhhcCC-C-eEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLD----IECFSFLNRALESEMS-P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~----~~~f~~Llk~lEe~~~-p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys~ 247 (448)
+.|++|||+|.|. .+.++.|.+.+++... + .+|+.++. .+....+.+.+.||+ ..+.|.||+.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~---------~~~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD---------LTFLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC---------cchhhhcCHHHHhcCCcceeecCCCCH
Confidence 5789999999996 5678888888776543 3 24444443 111223556677776 4789999999
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcc--hhH
Q psy1686 248 EEIQAILKIRL--------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLD--EGR 315 (448)
Q Consensus 248 ~eI~~IL~~Ra--------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D--~~~ 315 (448)
+++.+||+.|+ +++++++++++.+. .||+|+|+++|..|...|..++...|+.++|+++...... ...
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~ 289 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSE 289 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999775 89999999998852 5899999999999988887677778999999999975422 256
Q ss_pred HHHHHHHHHhhhhhh
Q psy1686 316 STQYLREHQNEYMFD 330 (448)
Q Consensus 316 s~~~L~~~~~~~l~~ 330 (448)
.++.|..+++.+|.-
T Consensus 290 ~~~~L~~~~k~~L~a 304 (394)
T PRK00411 290 VLRTLPLHEKLLLRA 304 (394)
T ss_pred HHhcCCHHHHHHHHH
Confidence 678888888888764
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=137.98 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=106.1
Q ss_pred CeEEEEeccCCCC---HHHHHHHHHhh--hhcC-CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCC
Q psy1686 176 PGVLFIDEVHMLD---IECFSFLNRAL--ESEM-SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~---~~~f~~Llk~l--Ee~~-~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys 246 (448)
+.|++|||+|.|. .+.++.|.+.. ++.+ .+ .+|+++|.- ...-.+.+.+.||+. .+.|+||+
T Consensus 130 ~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~---------~~~~~l~~~~~s~~~~~~i~f~p~~ 200 (365)
T TIGR02928 130 SLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL---------KFRENLDPRVKSSLCEEEIIFPPYD 200 (365)
T ss_pred eEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc---------chHhhcCHHHhccCCcceeeeCCCC
Confidence 5789999999994 34466677763 3322 22 444445430 001136677888884 78999999
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-c-hh
Q psy1686 247 DEEIQAILKIRL--------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-D-EG 314 (448)
Q Consensus 247 ~~eI~~IL~~Ra--------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D-~~ 314 (448)
.+|+.+||+.|+ +++++++++++++. .||+|.|+++++.|...|..++...|+.++|+++..... + ..
T Consensus 201 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~ 280 (365)
T TIGR02928 201 AEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLL 280 (365)
T ss_pred HHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999775 78999998887652 699999999999999888766777899999999887532 2 24
Q ss_pred HHHHHHHHHHhhhhhh
Q psy1686 315 RSTQYLREHQNEYMFD 330 (448)
Q Consensus 315 ~s~~~L~~~~~~~l~~ 330 (448)
.+++.|..|++.+|.-
T Consensus 281 ~~i~~l~~~~~~~l~a 296 (365)
T TIGR02928 281 ELIRGLPTHSKLVLLA 296 (365)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 5677777777766553
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=153.55 Aligned_cols=247 Identities=12% Similarity=0.084 Sum_probs=137.7
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC---CCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV---WPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g---pf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
.++.+++||+. +++++||++..+. ++.+++...+.+ -+++++||+..|||| +++.++. ++. +
T Consensus 72 ~pW~eKyrP~~-ldel~~~~~ki~~---l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~-------l~~---~ 137 (637)
T TIGR00602 72 EPWVEKYKPET-QHELAVHKKKIEE---VETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE-------LGI---Q 137 (637)
T ss_pred CchHHHhCCCC-HHHhcCcHHHHHH---HHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH-------hhh---H
Confidence 46889999999 7999999999875 677777655443 457899998558876 5544221 110 0
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCc-ccccCeEEEEe
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGK-AEIVPGVLFID 182 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~-~~i~~~VLfID 182 (448)
..++.. |-+... .-+.| .+..+....+....++. ++.++.+..+-......|. ..-.+.|+|||
T Consensus 138 ~~Ew~n-pv~~~~-------~~~~~--~~~~s~~~~~~~~~s~~-----~~F~~fl~~a~~~~~~~g~~~~~~~~IILID 202 (637)
T TIGR00602 138 VQEWSN-PTLPDF-------QKNDH--KVTLSLESCFSNFQSQI-----EVFSEFLLRATNKLQMLGDDLMTDKKIILVE 202 (637)
T ss_pred HHHHhh-hhhhcc-------ccccc--ccchhhhhccccccchH-----HHHHHHHHHHHhhhcccccccCCceeEEEee
Confidence 001100 000000 00000 00011111133333333 5666666554321101110 01135899999
Q ss_pred cc----CCCCHHHHHHHH-HhhhhcCCCeEEEEecCceeEeecccc-CCCCC----CChhhhh--hcccccCCCCCHHHH
Q psy1686 183 EV----HMLDIECFSFLN-RALESEMSPVVITATNRGVTKIRGTAY-SSPHG----IPIDLLD--RMVIIPTQPYQDEEI 250 (448)
Q Consensus 183 EV----H~L~~~~f~~Ll-k~lEe~~~pi~IlaT~~~i~lI~~Tte-np~~~----Ip~~lLS--R~~ii~~~pys~~eI 250 (448)
|+ |+.+...++.|. ...+....| +|+++++. .-+..+. .-.|. +++++++ ||.+|.|+||+..+|
T Consensus 203 EiPn~~~r~~~~lq~lLr~~~~e~~~~p-LI~I~TE~--~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l 279 (637)
T TIGR00602 203 DLPNQFYRDTRALHEILRWKYVSIGRCP-LVFIITES--LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIM 279 (637)
T ss_pred cchhhchhhHHHHHHHHHHHhhcCCCce-EEEEecCC--ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHH
Confidence 99 876554444444 355544334 33333321 0000000 00144 5689999 556799999999996
Q ss_pred HHHHH----Hhc--------C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHH----HhhhhCCCcccHHHHHHHH
Q psy1686 251 QAILK----IRL--------M-QTDGLRVLTKIALDTSLRYAIQLITTASV----VCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 251 ~~IL~----~Ra--------i-~deal~~La~~a~~Gd~R~AL~lLe~a~~----~a~~~~~~~It~e~V~~~~ 307 (448)
.+.|+ .++ + ++++++.|+..+ +||+|.||+.|+.++. .+...+...++..++++..
T Consensus 280 ~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s-~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 280 KKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGC-SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred HHHHHHHHHhhhhccccccccCCHHHHHHHHHhC-CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 55555 332 1 468999999988 9999999999998743 2322344568878877664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-14 Score=144.25 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=124.3
Q ss_pred cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhcc-cccc
Q psy1686 62 EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINS-RTHG 139 (448)
Q Consensus 62 ~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~ns-r~~g 139 (448)
.||++| -..|.||+..||++ |+.. |+.+.|. ++.....||..|..|++-+-..+.++|.+.-... ...|
T Consensus 17 ~~rl~h-a~Lf~Gp~G~GK~~lA~~~-------A~~LlC~-~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 17 RARLPH-ALLLHGQAGIGKLDFAQHL-------AQGLLCE-TPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred cCCcce-EEEEECCCCCCHHHHHHHH-------HHHHcCC-CCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 578887 23478987337754 4433 2333331 0011123444444444444455788887732110 0000
Q ss_pred chh------h--hcCCC-----CCCc-hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC
Q psy1686 140 FLA------L--FAGDT-----GEIT-PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP 205 (448)
Q Consensus 140 ~~a------~--~~~~~-----~eI~-~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p 205 (448)
.++ . ..|.+ ..|+ ++||+.+... .....+| .++|++||++|+++.++.|+|+|++|||+..
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~-~~~~~~~----~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 162 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFC-GVGTHRG----GARVVVLYPAEALNVAAANALLKTLEEPPPG 162 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHh-ccCCccC----CceEEEEechhhcCHHHHHHHHHHhcCCCcC
Confidence 000 0 01110 1221 7888755433 2222233 4689999999999999999999999999987
Q ss_pred -eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 206 -VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 206 -i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
+||+.|+. +..++++++|||+.++|.|.+.+++.+.|..+.+++. +.++..+ +|++..|+.+++
T Consensus 163 t~fiL~t~~------------~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~~~~--~~~l~~~-~Gsp~~Al~~~~ 227 (342)
T PRK06964 163 TVFLLVSAR------------IDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGVADA--DALLAEA-GGAPLAALALAS 227 (342)
T ss_pred cEEEEEECC------------hhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCCChH--HHHHHHc-CCCHHHHHHHHC
Confidence 78888887 8889999999999999999999999999985555543 2346777 899999988764
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=157.48 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=148.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|.+|.+.+||.. ++.+|||++. |+++|+ .++..+ .+++|+|..|||+ ++..+. .+..
T Consensus 174 ~~~L~~~~r~~~-ld~~iGr~~e------i~~~i~~l~r~~~~n--~lLvG~pGvGKTal~~~La~-------~i~~--- 234 (852)
T TIGR03345 174 TTDLTAQAREGK-IDPVLGRDDE------IRQMIDILLRRRQNN--PILTGEAGVGKTAVVEGLAL-------RIAA--- 234 (852)
T ss_pred hhhHHHHhcCCC-CCcccCCHHH------HHHHHHHHhcCCcCc--eeEECCCCCCHHHHHHHHHH-------HHhh---
Confidence 467888899998 7999999997 566664 667778 5699999548876 332111 0000
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcC--CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG--DTGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~--~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
..+| ...+...+..+|+. ++.+| ..+|....+|+.++++. ..+ .+.|||
T Consensus 235 ---~~v~----------~~l~~~~i~~l~l~--------~l~ag~~~~ge~e~~lk~ii~e~~----~~~----~~~ILf 285 (852)
T TIGR03345 235 ---GDVP----------PALRNVRLLSLDLG--------LLQAGASVKGEFENRLKSVIDEVK----ASP----QPIILF 285 (852)
T ss_pred ---CCCC----------ccccCCeEEEeehh--------hhhcccccchHHHHHHHHHHHHHH----hcC----CCeEEE
Confidence 0111 00111222223332 22222 34555567777776552 122 358999
Q ss_pred EeccCCCCH-----HHH---HHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHHH
Q psy1686 181 IDEVHMLDI-----ECF---SFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDEE 249 (448)
Q Consensus 181 IDEVH~L~~-----~~f---~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~e 249 (448)
|||+|+|.. .++ ++|.++++ ++.+.+|++||+ +|++.+.++|++||++|.+++.+.++
T Consensus 286 IDEih~l~~~g~~~~~~d~~n~Lkp~l~-----------~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~ 354 (852)
T TIGR03345 286 IDEAHTLIGAGGQAGQGDAANLLKPALA-----------RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEET 354 (852)
T ss_pred EeChHHhccCCCccccccHHHHhhHHhh-----------CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHH
Confidence 999999963 333 46777777 588999999996 79999999999999999999999999
Q ss_pred HHHHHHH---hc-------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhh-hhCCCcccHHHHHHH
Q psy1686 250 IQAILKI---RL-------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVVCR-RRKATEICMEDIRKV 306 (448)
Q Consensus 250 I~~IL~~---Ra-------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~a~-~~~~~~It~e~V~~~ 306 (448)
..+||+. +. |+|+|+..++++|. ..=+-+|+.+|+.|+.... ......++.+++++-
T Consensus 355 ~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 355 AIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred HHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 9999642 11 89999999999982 2246789999999865432 223344555555443
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-14 Score=138.92 Aligned_cols=202 Identities=19% Similarity=0.162 Sum_probs=135.3
Q ss_pred cccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC-CccccCCCcccce
Q psy1686 41 QGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT-KDLRCPDGELQKR 118 (448)
Q Consensus 41 ~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~-~fv~~p~ge~~k~ 118 (448)
++++|++++... .+......+++++ ...++|||..|||+ |.-. |+++-| +.. ...+|.++..|+.
T Consensus 1 ~~~~~~~~~~~~--l~~~~~~~~~~~h-alL~~Gp~G~Gktt~a~~l-------A~~l~~---~~~~~~~~~~~~~~~~~ 67 (325)
T COG0470 1 DELVPWQEAVKR--LLVQALESGRLPH-ALLFYGPPGVGKTTAALAL-------AKELLC---ENPTGLLPCGHCRSCKL 67 (325)
T ss_pred CCcccchhHHHH--HHHHHHhcCCCCc-eeeeeCCCCCCHHHHHHHH-------HHHHhC---CCcccCCcccchhhhhH
Confidence 357888888754 2334444777766 35689998558865 3322 222222 111 1122222234444
Q ss_pred eeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHh
Q psy1686 119 KTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRA 198 (448)
Q Consensus 119 kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~ 198 (448)
-....+-++||+.....+..+ -+.+.||+..... . ....+-.++|++|||++.++.+++|+|+|+
T Consensus 68 ~~~~~~~d~lel~~s~~~~~~----------i~~~~vr~~~~~~----~-~~~~~~~~kviiidead~mt~~A~nallk~ 132 (325)
T COG0470 68 IPAGNHPDFLELNPSDLRKID----------IIVEQVRELAEFL----S-ESPLEGGYKVVIIDEADKLTEDAANALLKT 132 (325)
T ss_pred HhhcCCCceEEecccccCCCc----------chHHHHHHHHHHh----c-cCCCCCCceEEEeCcHHHHhHHHHHHHHHH
Confidence 444456788888877776322 1114455433322 1 111122469999999999999999999999
Q ss_pred hhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHH
Q psy1686 199 LESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 199 lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R 277 (448)
+|+|+.. .||+.||. +.+|.+++.|||++++|+| ...+..|.. .+++++..++..+ .||+|
T Consensus 133 lEep~~~~~~il~~n~------------~~~il~tI~SRc~~i~f~~--~~~~~~i~~---~e~~~l~~i~~~~-~gd~r 194 (325)
T COG0470 133 LEEPPKNTRFILITND------------PSKILPTIRSRCQRIRFKP--PSRLEAIAW---LEDQGLEEIAAVA-EGDAR 194 (325)
T ss_pred hccCCCCeEEEEEcCC------------hhhccchhhhcceeeecCC--chHHHHHHH---hhccchhHHHHHH-HHHHH
Confidence 9999876 77788886 7889999999999999999 445555555 5578899999999 99999
Q ss_pred HHHHHHHHHHH
Q psy1686 278 YAIQLITTASV 288 (448)
Q Consensus 278 ~AL~lLe~a~~ 288 (448)
.|+|.|+.+..
T Consensus 195 ~~i~~lq~~~~ 205 (325)
T COG0470 195 KAINPLQALAA 205 (325)
T ss_pred cCCCHHHHHHH
Confidence 99999997754
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-14 Score=132.05 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
+++|+.++.+-.. .. .+.++||++|+|+.+++|+|+|++||||.+ +||++|+. +..+++
T Consensus 40 d~iReii~~~~~~---~~-----~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~------------~~~llp 99 (206)
T PRK08485 40 EDAKEVIAEAYIA---ES-----EEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKS------------KNLLLP 99 (206)
T ss_pred HHHHHHHHHHhhC---CC-----CcEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCC------------hHhCch
Confidence 8899988765321 11 133568999999999999999999999987 88888887 888999
Q ss_pred hhhhhccc-------------ccCCCCCHHHHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy1686 232 DLLDRMVI-------------IPTQPYQDEEIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 232 ~lLSR~~i-------------i~~~pys~~eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~ 289 (448)
+++|||++ +.|++++.++|.+.|+... .+++++++|++++ .|++|+|+++.+++..+
T Consensus 100 TI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~~ke~~~~~~ea~~lIa~la-~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 100 TIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKELEKENKLSKEELKELIESLL-KECVKYKIPLNEEELEY 174 (206)
T ss_pred HHHhhheeccccccccccccccccCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH-HHHHHHHcCccHHHHHH
Confidence 99999987 7799999999999996421 7888999999999 99999999999988654
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-13 Score=133.14 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCC-Ccccceeeeeeccchhhhh
Q psy1686 54 GVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPD-GELQKRKTVVHTVTLHEID 131 (448)
Q Consensus 54 ~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~-ge~~k~kei~~~vtLheiD 131 (448)
.-|.+++++||++|- ..|.||+..||++ |.-. |+. .-|+. ...|++-.-..+.|+|.+.
T Consensus 7 ~~L~~~i~~~rl~HA-yLf~G~~G~Gk~~lA~~~-------A~~-----------llC~~~~~~c~~~~~~~HPD~~~i~ 67 (290)
T PRK05917 7 EALIQRVRDQKVPSA-IILHGQDLSNLSARAYEL-------ASL-----------ILKETSPEAAYKISQKIHPDIHEFS 67 (290)
T ss_pred HHHHHHHHcCCcCee-EeeECCCCCcHHHHHHHH-------HHH-----------HhCCCCccHHHHHhcCCCCCEEEEe
Confidence 458899999999982 2477887446643 3211 111 22211 1122222333466666653
Q ss_pred hhcc-ccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEE
Q psy1686 132 VINS-RTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVIT 209 (448)
Q Consensus 132 ~~ns-r~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Il 209 (448)
-... +. + +. +++|+.+.+. .....+| .++|++||++|+++.+++|+|+|++||||.. +||+
T Consensus 68 p~~~~~~--I-----~i-----dqiR~l~~~~-~~~p~e~----~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL 130 (290)
T PRK05917 68 PQGKGRL--H-----SI-----ETPRAIKKQI-WIHPYES----PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIIL 130 (290)
T ss_pred cCCCCCc--C-----cH-----HHHHHHHHHH-hhCccCC----CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEE
Confidence 2211 00 0 12 7788655443 2323334 4699999999999999999999999999987 7788
Q ss_pred EecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R 277 (448)
.|+. +..++++++|||++++|.|+... .++++....++..+ +|++.
T Consensus 131 ~~~~------------~~~ll~TI~SRcq~~~~~~~~~~---------~i~~~~~~~l~~~~-~g~~~ 176 (290)
T PRK05917 131 TSAK------------PQRLPPTIRSRSLSIHIPMEEKT---------LVSKEDIAYLIGYA-QGKES 176 (290)
T ss_pred EeCC------------hhhCcHHHHhcceEEEccchhcc---------CCCHHHHHHHHHHh-CCChh
Confidence 8887 88899999999999999997221 27888888899998 89885
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=120.12 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=89.0
Q ss_pred eEEEEeccCCCC--H----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCC---CCChhhhhh---cccccCCC
Q psy1686 177 GVLFIDEVHMLD--I----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPH---GIPIDLLDR---MVIIPTQP 244 (448)
Q Consensus 177 ~VLfIDEVH~L~--~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~---~Ip~~lLSR---~~ii~~~p 244 (448)
.+|+|||+|++. . ..|+.++...+. ...+|++++. ||- .+.++|.|| |+++.|+|
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~--~~~vI~ts~~-----------~p~~l~~~~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAA--GITLLYTARQ-----------MPDGLALVLPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHc--CCeEEEECCC-----------ChhhhhhhhHHHHHHHhcCceEEecC
Confidence 789999999995 2 234444444442 1234444443 233 346999999 88999999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++.+++.+||+.+| ++++++++|++.+ +||+|.++++|+.+...+... ++.||.+.+++++.
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~-~rd~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHG-ERELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 99999999999766 9999999999999 999999999999876444323 34799999998875
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=122.23 Aligned_cols=119 Identities=12% Similarity=0.203 Sum_probs=95.3
Q ss_pred eEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCC-Chhhhhhc---ccccCCCCC
Q psy1686 177 GVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGI-PIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 177 ~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~I-p~~lLSR~---~ii~~~pys 246 (448)
.+|+||++|.+.. +-|+.++...| ++..+++.+++.+|.+.. .++|.||+ +++.++|++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~-----------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~ 167 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRD-----------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLS 167 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHh-----------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCC
Confidence 6899999999842 24566666665 355667777776666665 69999999 899999999
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 247 ~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++...+++.++ ++++++++|++.+ ++|+|.++++|+.....+. ..++.||..-+++++.
T Consensus 168 ~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~-~~d~r~l~~~l~~l~~~~l-~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 168 DEDKLRALQLRASRRGLHLTDEVGHFILTRG-TRSMSALFDLLERLDQASL-QAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH-HcCCcCCHHHHHHHhc
Confidence 999999999666 9999999999999 9999999999998864443 2345799999998764
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=129.30 Aligned_cols=141 Identities=15% Similarity=0.010 Sum_probs=103.0
Q ss_pred CCCccccee--eeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 111 PDGELQKRK--TVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 111 p~ge~~k~k--ei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
|||.|..|+ .-..+.|+|.+.-... + + +. +++|+.+...-..-.+.| .++|++||++++++
T Consensus 39 ~Cg~C~sC~~i~~~~HPDl~~i~p~~~-~--I-----~i-----d~ir~l~~~l~~~s~e~~----~~KV~II~~ae~m~ 101 (261)
T PRK05818 39 FCKTCESCLKILNGKYNDFYLIFDQKN-P--I-----KK-----EDALSIINKLNRPSVESN----GKKIYIIYGIEKLN 101 (261)
T ss_pred CCCCCHHHHHHhcCCCCCEEEecCCcc-c--C-----CH-----HHHHHHHHHHccCchhcC----CCEEEEeccHhhhC
Confidence 455555444 4455888887632221 1 1 22 788876654321111222 25999999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCC----------CHHHHHHHHHHh
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY----------QDEEIQAILKIR 257 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py----------s~~eI~~IL~~R 257 (448)
.++.|+|+|++||||.. +||+.|+. +..++++++|||+++.|.++ ++.++.+.|..+
T Consensus 102 ~~AaNaLLK~LEEPp~~t~fiLit~~------------~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~L~~~ 169 (261)
T PRK05818 102 KQSANSLLKLIEEPPKNTYGIFTTRN------------ENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLSF 169 (261)
T ss_pred HHHHHHHHHhhcCCCCCeEEEEEECC------------hHhCchHhhhheeeeecCChhhhcccccccChHHHHHHHHHc
Confidence 99999999999999987 77788877 78899999999999999998 777777777644
Q ss_pred c-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 258 L-MQTDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 258 a-i~deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
. +++ .++..+ +|+...|+.+++.
T Consensus 170 ~~~d~----~i~~~a-~g~~~~a~~l~~~ 193 (261)
T PRK05818 170 YSVDE----QLQAYN-NGSFSKLKNIIET 193 (261)
T ss_pred cCccH----HHHHHc-CCCHHHHHHHHHH
Confidence 3 544 566778 9999999999994
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=123.19 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=155.2
Q ss_pred ccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhhhhhhccCccccccCCCc
Q psy1686 22 HSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWL 101 (448)
Q Consensus 22 hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~I~~~~gk~~a~~~d~~~ 101 (448)
-|-..-+|.-+..||.. +.++|||+... ..+.+.+..++++| +.++|||..|||++ .+.+ |+++
T Consensus 23 ~~~~~~~pwvekyrP~~-l~dv~~~~ei~---st~~~~~~~~~lPh--~L~YgPPGtGktst-----i~a~-a~~l---- 86 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPF-LGIVIKQEPIW---STENRYSGMPGLPH--LLFYGPPGTGKTST-----ILAN-ARDF---- 86 (360)
T ss_pred CCcccCCCCccCCCCch-hhhHhcCCchh---hHHHHhccCCCCCc--ccccCCCCCCCCCc-----hhhh-hhhh----
Confidence 34456788889999998 79999999996 55788888888888 67999985466521 1111 2222
Q ss_pred cCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHH-HHhCcccccCeEEE
Q psy1686 102 ADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEW-REEGKAEIVPGVLF 180 (448)
Q Consensus 102 ~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~-~~~g~~~i~~~VLf 180 (448)
.||.+- |++ +..+.+++...| +=+|++|..-..-+ +.-.....-++.++
T Consensus 87 -------y~~~~~-------------------~~m---~lelnaSd~rgi-d~vr~qi~~fast~~~~~fst~~~fKlvI 136 (360)
T KOG0990|consen 87 -------YSPHPT-------------------TSM---LLELNASDDRGI-DPVRQQIHLFASTQQPTTYSTHAAFKLVI 136 (360)
T ss_pred -------cCCCCc-------------------hhH---HHHhhccCccCC-cchHHHHHHHHhhccceeccccCceeEEE
Confidence 222110 111 333444444444 66777776432111 00001112368999
Q ss_pred EeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-
Q psy1686 181 IDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL- 258 (448)
Q Consensus 181 IDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra- 258 (448)
+||.+..+.++||+|-|..|.+-.. .|+ +--|++.++-++++|||.-|+|.|++..++..++...+
T Consensus 137 LDEADaMT~~AQnALRRviek~t~n~rF~------------ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 137 LDEADAMTRDAQNALRRVIEKYTANTRFA------------TISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred ecchhHhhHHHHHHHHHHHHHhccceEEE------------EeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHh
Confidence 9999999999999999999976433 222 33477999999999999999999999999888887655
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++...+++.+ .||+|.|+|.|......-.......+..+.|....+
T Consensus 205 ~e~~~~~~~~~~a~~r~s-~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g 258 (360)
T KOG0990|consen 205 SEQKETNPEGYSALGRLS-VGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKG 258 (360)
T ss_pred cchhhcCHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcC
Confidence 8999999999999 999999999999775432111122345555555443
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-12 Score=128.58 Aligned_cols=180 Identities=15% Similarity=0.080 Sum_probs=115.1
Q ss_pred cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeee--eeccchhhhhhhccc-c
Q psy1686 62 EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTV--VHTVTLHEIDVINSR-T 137 (448)
Q Consensus 62 ~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei--~~~vtLheiD~~nsr-~ 137 (448)
.+|++| -..|+||+..||++ |+..++. ..|. .+..... |||+|..|+.+ ..+.++|+++..... .
T Consensus 17 ~~r~~h-A~Lf~G~~G~GK~~la~~~a~~-------llC~-~~~~~~~--~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 17 WERRPN-AWLFAGKKGIGKTAFARFAAQA-------LLCE-TPAPGHK--PCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred cCCcce-EEEeECCCCCCHHHHHHHHHHH-------HcCC-CCCCCCC--CCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 578887 34588988448865 5544332 2220 0111122 45555555544 457888888764321 1
Q ss_pred ccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCcee
Q psy1686 138 HGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVT 216 (448)
Q Consensus 138 ~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~ 216 (448)
.|-..-.-++ ++||+.++.+. .....| .++|++||++|+|+.++++.|+|++|+++.. +||+.|..
T Consensus 86 ~g~~~~~I~i-----d~iR~l~~~~~-~~p~~~----~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~--- 152 (325)
T PRK08699 86 NGRKLLQIKI-----DAVREIIDNVY-LTSVRG----GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA--- 152 (325)
T ss_pred ccccCCCcCH-----HHHHHHHHHHh-hCcccC----CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC---
Confidence 1100000012 88998665442 222334 3599999999999999999999999998754 67777776
Q ss_pred EeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHH
Q psy1686 217 KIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 217 lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R 277 (448)
+..+++++.|||++++|.|++.+++.+.|..+.++++. ..+ ..+ +|+..
T Consensus 153 ---------~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~-~~l-~~~-~g~p~ 201 (325)
T PRK08699 153 ---------ADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGVAEPE-ERL-AFH-SGAPL 201 (325)
T ss_pred ---------hHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCCCcHH-HHH-HHh-CCChh
Confidence 66899999999999999999999999998755444432 223 334 56653
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=116.16 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=99.7
Q ss_pred eEEEEeccCCCC---HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCC-Chhhhhhc---ccccCCCCCHHH
Q psy1686 177 GVLFIDEVHMLD---IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGI-PIDLLDRM---VIIPTQPYQDEE 249 (448)
Q Consensus 177 ~VLfIDEVH~L~---~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~I-p~~lLSR~---~ii~~~pys~~e 249 (448)
++++|||+|.+. .+.|..++...| ++..++|.+++.+|.+.. .++|.||| .++.++|++.++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~-----------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ-----------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh-----------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 579999999984 345777777777 356677777778877776 79999999 899999999999
Q ss_pred HHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 250 IQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 250 I~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+..+|+.++ ++++++++|++.+ .||+|.++.+|.+....+.. .++.||...+++++..+
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~-~r~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRM-ERSLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 999999666 9999999999999 89999999988877655532 34579999999998754
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=123.33 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
+++|+.+...-..-.+.| .++|++||++|+++.+++|+|+|++|+||.. +||+.|+. +.++.+
T Consensus 72 d~Ir~l~~~~~~~~~~~~----~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~------------~~kll~ 135 (299)
T PRK07132 72 SEFLSAINKLYFSSFVQS----QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKN------------INKVLP 135 (299)
T ss_pred HHHHHHHHHhccCCcccC----CceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCC------------hHhChH
Confidence 788876655421111112 3699999999999999999999999999987 66666665 678999
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHhcCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 232 DLLDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 232 ~lLSR~~ii~~~pys~~eI~~IL~~Rai~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
+++|||++++|.|++.+++.+.|..+.++++....++.++ + ++..|+.++.
T Consensus 136 TI~SRc~~~~f~~l~~~~l~~~l~~~~~~~~~a~~~a~~~-~-~~~~a~~~~~ 186 (299)
T PRK07132 136 TIVSRCQVFNVKEPDQQKILAKLLSKNKEKEYNWFYAYIF-S-NFEQAEKYIN 186 (299)
T ss_pred HHHhCeEEEECCCCCHHHHHHHHHHcCCChhHHHHHHHHc-C-CHHHHHHHHh
Confidence 9999999999999999999999885568888788888887 5 5988888754
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=121.34 Aligned_cols=107 Identities=26% Similarity=0.292 Sum_probs=80.8
Q ss_pred CeEEEEeccCCC---------CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCC
Q psy1686 176 PGVLFIDEVHML---------DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L---------~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~p 244 (448)
++||||||+|+| +.++++.|++.+|+.... ++|+|++.. .....+..+++|+|||. +|.|.|
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~-------~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKD-------RMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-------HHHHHHhcCHHHHHhCCceEEcCC
Confidence 489999999997 578999999999986543 444443321 01224556799999997 899999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHH----c---CCCCHHHHHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKI----A---LDTSLRYAIQLITTASVV 289 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~----a---~~Gd~R~AL~lLe~a~~~ 289 (448)
|+.+|+.+|++.-+ +++++...+..+ + .-|++|..-++++.+...
T Consensus 196 ~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 196 YTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred cCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999988543 888877666664 1 237899999999988754
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.5e-11 Score=121.27 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=105.6
Q ss_pred CeEEEEeccCCCCHH---HHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHHH
Q psy1686 176 PGVLFIDEVHMLDIE---CFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDEE 249 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~---~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~e 249 (448)
.-|+++||++.|... ..+.|.++.++.-.. .+|+.+|. ..+. -.+-+-+.||.. .|.|+||+.+|
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~-~~~~--------~~ld~rv~s~l~~~~I~F~pY~a~e 194 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND-DKFL--------DYLDPRVKSSLGPSEIVFPPYTAEE 194 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc-HHHH--------HHhhhhhhhccCcceeeeCCCCHHH
Confidence 478999999999654 677777777765211 23333332 1000 112344555553 57799999999
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc--chhHHH
Q psy1686 250 IQAILKIRL--------MQTDGLRVLTKIA--LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL--DEGRST 317 (448)
Q Consensus 250 I~~IL~~Ra--------i~deal~~La~~a--~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~--D~~~s~ 317 (448)
|++||+.|+ +++++++++|..+ ..||+|+|+.+|+.|+..|+.++...|+.++|+++....- -..+.+
T Consensus 195 l~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~ 274 (366)
T COG1474 195 LYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVL 274 (366)
T ss_pred HHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHH
Confidence 999999988 9999999999763 4679999999999999999988999999999999954311 124557
Q ss_pred HHHHHHHhhhhhh
Q psy1686 318 QYLREHQNEYMFD 330 (448)
Q Consensus 318 ~~L~~~~~~~l~~ 330 (448)
+.|..|++.++..
T Consensus 275 ~~L~~~~ki~L~~ 287 (366)
T COG1474 275 KTLPLHQKIVLLA 287 (366)
T ss_pred HcCCHhHHHHHHH
Confidence 7777777777554
|
|
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-11 Score=116.59 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=138.8
Q ss_pred CCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhh------hhhhccCccccccCCCccCCC
Q psy1686 32 DSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKK------ISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 32 ~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~------I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+..||++ ++++.+-+.. ++-|......+-++| ..++||-..||+|.- +. +.|.- .... +..
T Consensus 5 dkyrpks-l~~l~~~~e~---~~~Lksl~~~~d~PH--ll~yGPSGaGKKTrimclL~elY-G~gve---klki---~~~ 71 (351)
T KOG2035|consen 5 DKYRPKS-LDELIYHEEL---ANLLKSLSSTGDFPH--LLVYGPSGAGKKTRIMCLLRELY-GVGVE---KLKI---ETR 71 (351)
T ss_pred hhcCcch-hhhcccHHHH---HHHHHHhcccCCCCe--EEEECCCCCCchhhHHHHHHHHh-CCCch---heee---eeE
Confidence 5689998 7999988776 455666666788888 888998744887611 11 11100 0000 111
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCC-CCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTG-EITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~-eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.|.. |.+ |+-|+.---+.+-+.+.=| ..|... -+=+|+-+++... ..++.. ..-..+|++|-|+
T Consensus 72 t~~t-pS~---kklEistvsS~yHlEitPS--------DaG~~DRvViQellKevAQt--~qie~~-~qr~fKvvvi~ea 136 (351)
T KOG2035|consen 72 TFTT-PSK---KKLEISTVSSNYHLEITPS--------DAGNYDRVVIQELLKEVAQT--QQIETQ-GQRPFKVVVINEA 136 (351)
T ss_pred EEec-CCC---ceEEEEEecccceEEeChh--------hcCcccHHHHHHHHHHHHhh--cchhhc-cccceEEEEEech
Confidence 2322 222 1222222112222222211 112100 0112222222221 112111 1124699999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
+-|++++|-+|-|++|-+... .+|+..|. ...|.+++.|||+.++....+++||..+|..-+
T Consensus 137 d~LT~dAQ~aLRRTMEkYs~~~RlIl~cns------------~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 137 DELTRDAQHALRRTMEKYSSNCRLILVCNS------------TSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred HhhhHHHHHHHHHHHHHHhcCceEEEEecC------------cccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999876 66666676 556889999999999999999999998888544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~ 289 (448)
+.++.+..|++-+ +|++|.||-+||.+...
T Consensus 205 ~lp~~~l~rIa~kS-~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 205 QLPKELLKRIAEKS-NRNLRRALLMLEAVRVN 235 (351)
T ss_pred cCcHHHHHHHHHHh-cccHHHHHHHHHHHHhc
Confidence 8899999999999 99999999999988654
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=109.36 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC---CCeEEEEecCceeEeeccccCC-CCCCChhhhhhc---ccccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM---SPVVITATNRGVTKIRGTAYSS-PHGIPIDLLDRM---VIIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~---~ii~~~pys~~ 248 (448)
.+++||||+|.++...+..|...++... .++++++++. .| ...+-.++.||+ ..+++.|++.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~----------~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPA----------APLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCC----------CHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 3789999999999888888888776422 1234333332 22 223458899996 79999999999
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+...+|+..+ ++++++++|++.. .||+|.+.++|+....+|. ..++.||...++++++
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~-~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSL-EQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHh
Confidence 8888887422 9999999999987 9999999999998765553 3346899999999875
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=117.20 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=82.3
Q ss_pred CeEEEEeccCCC---------CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCC
Q psy1686 176 PGVLFIDEVHML---------DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L---------~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~p 244 (448)
++||||||+|+| +.+.++.|++.+|+.... ++|++++.. .....+.++++|+|||. .|.|.|
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-------~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-------RMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-------HHHHHHhhCHHHHhhCCcEEEeCC
Confidence 489999999988 467889999999976433 333333221 01235567899999995 899999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKI-------ALDTSLRYAIQLITTASVV 289 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~-------a~~Gd~R~AL~lLe~a~~~ 289 (448)
|+.+|+.+|++.-+ +++++++.+.++ ..-|++|.+-|+++.+...
T Consensus 195 l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 195 YSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred cCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999988533 899999988887 3358999999999998754
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=118.22 Aligned_cols=133 Identities=23% Similarity=0.228 Sum_probs=90.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCe----EEEEecCceeEeeccccCCCC-CCChhhhhhcc-cccCCCCCH-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPV----VITATNRGVTKIRGTAYSSPH-GIPIDLLDRMV-IIPTQPYQD-E 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi----~IlaT~~~i~lI~~Ttenp~~-~Ip~~lLSR~~-ii~~~pys~-~ 248 (448)
.++||||||++|+...|+.|+.++++....+ .-...... ++-.+|.||.. .+|+++++|+. .+.+...+. +
T Consensus 145 ~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~r--fiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 145 RGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPAR--FVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCC--EEEEeccCcccCCCCHHHHHHhCceeecCCCCChH
Confidence 4899999999999999999999998621000 00000111 22222444433 48999999986 445554442 2
Q ss_pred HHHHHHH-----------------------------Hhc------CCHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILK-----------------------------IRL------MQTDGLRVLTKIAL--D-TSLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~-----------------------------~Ra------i~deal~~La~~a~--~-Gd~R~AL~lLe~a~~~a 290 (448)
+-.+||+ .|. ++++.+++|++++. + -+.|-.+.++..|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 2223332 121 89999999999852 2 38999999999998877
Q ss_pred hhhCCCcccHHHHHHHHHHh
Q psy1686 291 RRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~lf 310 (448)
--+|+..|+.+||+.+..+.
T Consensus 303 al~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 66888999999999998754
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-11 Score=135.34 Aligned_cols=205 Identities=19% Similarity=0.178 Sum_probs=133.0
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|.+|.+..||.. ++.+|||++. ++++|+ .++..+ .+++|||..|||+ ++-.. ...-
T Consensus 160 ~~~l~~~~~~~~-~~~~igr~~e------i~~~~~~l~r~~~~n--~lL~G~pGvGKT~l~~~la-------~~i~---- 219 (852)
T TIGR03346 160 ARDLTERAREGK-LDPVIGRDEE------IRRTIQVLSRRTKNN--PVLIGEPGVGKTAIVEGLA-------QRIV---- 219 (852)
T ss_pred hhhHHHHhhCCC-CCcCCCcHHH------HHHHHHHHhcCCCCc--eEEEcCCCCCHHHHHHHHH-------HHHh----
Confidence 357888899998 7999999996 455554 444455 5689998448875 33110 0000
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
..++| .. .+...+..+|+ .++.+|. .++.-..+++.++... ..+ .+.|||
T Consensus 220 --~~~~p--~~--------l~~~~~~~l~~--------~~l~a~~~~~g~~e~~l~~~l~~~~----~~~----~~~ILf 271 (852)
T TIGR03346 220 --NGDVP--ES--------LKNKRLLALDM--------GALIAGAKYRGEFEERLKAVLNEVT----KSE----GQIILF 271 (852)
T ss_pred --ccCCc--hh--------hcCCeEEEeeH--------HHHhhcchhhhhHHHHHHHHHHHHH----hcC----CCeEEE
Confidence 01111 00 00111111222 2222222 2333344555554331 222 258999
Q ss_pred EeccCCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHH
Q psy1686 181 IDEVHMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEE 249 (448)
Q Consensus 181 IDEVH~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~e 249 (448)
|||+|+|. .++.+.|..+++ ++.+.+|++||.+++ +...+++.+||..|.+.+.+.++
T Consensus 272 IDEih~l~~~g~~~~~~d~~~~Lk~~l~-----------~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~ 340 (852)
T TIGR03346 272 IDELHTLVGAGKAEGAMDAGNMLKPALA-----------RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVED 340 (852)
T ss_pred eccHHHhhcCCCCcchhHHHHHhchhhh-----------cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHH
Confidence 99999995 245677766655 578999999998877 77899999999988999999999
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHcC--CCC---HHHHHHHHHHHHHHh
Q psy1686 250 IQAILKIRL----------MQTDGLRVLTKIAL--DTS---LRYAIQLITTASVVC 290 (448)
Q Consensus 250 I~~IL~~Ra----------i~deal~~La~~a~--~Gd---~R~AL~lLe~a~~~a 290 (448)
...||+... ++++++..++.+|. -+| +..|+.+|+.|+...
T Consensus 341 ~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 341 TISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 999987422 89999999998872 124 889999999987543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-10 Score=104.85 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=86.9
Q ss_pred eEEEEeccCCCCH--HHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCCCC-hhhhhhc---ccccCCCCCHH
Q psy1686 177 GVLFIDEVHMLDI--ECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHGIP-IDLLDRM---VIIPTQPYQDE 248 (448)
Q Consensus 177 ~VLfIDEVH~L~~--~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip-~~lLSR~---~ii~~~pys~~ 248 (448)
++|+|||+|+++. +.+..|...++... ...+|++++. ..+...+. +++.+|+ ..+++.|++.+
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~---------~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA---------APAQLPLRLPDLRTRLAWGLVFQLPPLSDE 162 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC---------ChHHCCcccHHHHHHHhcCeeEecCCCCHH
Confidence 6899999999975 33666666554321 1133333332 11111133 7888897 48999999999
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|+..+++..+ ++++++++|++.. .|++|.+.++|+.+..++.. +++.||.+.|++++
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 9999988543 9999999999987 99999999999998766544 44579999998875
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=130.20 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=129.2
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHh---cCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIK---EEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~---~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|-+|.+..||.. ++.+|||++. ++++|+ ..+-.+ .+++|||..|||+ ++..+.. .-
T Consensus 165 ~~~l~~~~r~~~-l~~vigr~~e------i~~~i~iL~r~~~~n--~lL~G~pGvGKT~l~~~la~~-------i~---- 224 (857)
T PRK10865 165 TIDLTERAEQGK-LDPVIGRDEE------IRRTIQVLQRRTKNN--PVLIGEPGVGKTAIVEGLAQR-------II---- 224 (857)
T ss_pred hhhHHHHHhcCC-CCcCCCCHHH------HHHHHHHHhcCCcCc--eEEECCCCCCHHHHHHHHHHH-------hh----
Confidence 467888899998 7999999996 566664 444445 6699998448876 3311110 00
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
...+| .. .+...+..+| +.++.+|. .++....+++.+++.. ..+ .+.|||
T Consensus 225 --~~~vp--~~--------l~~~~~~~l~--------l~~l~ag~~~~g~~e~~lk~~~~~~~----~~~----~~~ILf 276 (857)
T PRK10865 225 --NGEVP--EG--------LKGRRVLALD--------MGALVAGAKYRGEFEERLKGVLNDLA----KQE----GNVILF 276 (857)
T ss_pred --cCCCc--hh--------hCCCEEEEEe--------hhhhhhccchhhhhHHHHHHHHHHHH----HcC----CCeEEE
Confidence 01111 00 0001111122 22223222 3444456666665432 122 258999
Q ss_pred EeccCCCCH--------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHH
Q psy1686 181 IDEVHMLDI--------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEE 249 (448)
Q Consensus 181 IDEVH~L~~--------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~e 249 (448)
|||+|+|.. ++.+.|.++++ ++.+.+|++||.+++ +.+.+++.+||..+.+..-+.++
T Consensus 277 IDEih~l~~~~~~~~~~d~~~~lkp~l~-----------~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~ 345 (857)
T PRK10865 277 IDELHTMVGAGKADGAMDAGNMLKPALA-----------RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVED 345 (857)
T ss_pred EecHHHhccCCCCccchhHHHHhcchhh-----------cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHH
Confidence 999999953 46888887776 688999999999886 77899999999755555558888
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHH
Q psy1686 250 IQAILKIRL----------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVV 289 (448)
Q Consensus 250 I~~IL~~Ra----------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~ 289 (448)
...||+... ++++++...+.++. ..=...|+.+++.++..
T Consensus 346 ~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 346 TIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 888886311 78998887767651 22456788888877543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-10 Score=118.48 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=91.8
Q ss_pred CeEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC---CChhhhhhc---ccccCC
Q psy1686 176 PGVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRM---VIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~---~ii~~~ 243 (448)
..+|+|||||.+.. +.|+.|+..++.. .+++ ++++. ||.. +.+.+.||+ +++.++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~ii-its~~-----------~p~~l~~l~~~l~SRl~~gl~v~i~ 278 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIV-LTSDR-----------PPKELPGLEERLRSRFEWGLTVDIE 278 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEE-EECCC-----------CHHHHHHHHHHHHhHhcCCeeEEec
Confidence 47999999999943 3455555666632 2232 23332 2333 557899999 589999
Q ss_pred CCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 244 PYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 244 pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
|++.++..+||+.++ ++++++++|++.+ .||+|...++|.....++... +..||.+.+++++..+
T Consensus 279 ~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~R~l~~~l~~l~~~~~~~-~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 279 PPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNI-TSNVRELEGALNRLIAYASLT-GKPITLELAKEALKDL 349 (450)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-CCCHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHh
Confidence 999999999999776 9999999999999 999999999999887666433 4569999999999854
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-09 Score=112.50 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=133.0
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcC--------CC-CCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEE--------VV-MVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki-~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
.|...+++++|++++++...-+...++.. +. .| +.++|||.+|||+ ++.. |++.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~g--iLL~GppGtGKT~la~al-------A~~~~------ 113 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKG--VLLVGPPGTGKTLLAKAV-------AGEAG------ 113 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCc--EEEECCCCCCHHHHHHHH-------HHHcC------
Confidence 56777999999999987754444444421 11 13 7789999558875 5532 12222
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.+|+.++..++. ..+.|. =.+.+|+.+..+.. . .|.||||||+
T Consensus 114 ~~~~~i~~~~~~-------------------------~~~~g~---~~~~l~~~f~~a~~------~---~p~Il~iDEi 156 (495)
T TIGR01241 114 VPFFSISGSDFV-------------------------EMFVGV---GASRVRDLFEQAKK------N---APCIIFIDEI 156 (495)
T ss_pred CCeeeccHHHHH-------------------------HHHhcc---cHHHHHHHHHHHHh------c---CCCEEEEech
Confidence 245543222211 111121 11567766665421 1 3689999999
Q ss_pred CCCCHH--------------HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCCH
Q psy1686 185 HMLDIE--------------CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQD 247 (448)
Q Consensus 185 H~L~~~--------------~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys~ 247 (448)
|.+... ..+.|+..++... .+.++.+|++| |.+..+.+++++ |+- .+.+.+.+.
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-------~~~~v~vI~aT--n~~~~ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------TNTGVIVIAAT--NRPDVLDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhcccc-------CCCCeEEEEec--CChhhcCHHHhcCCcceEEEEcCCCCH
Confidence 998432 2334444444321 12233344433 337789999987 553 788999999
Q ss_pred HHHHHHHHHhc----C-CHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL----M-QTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra----i-~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++-.+|++... + ++..+..+++.+ .| +.++.-+++..|...|..++...|+.+++++++...
T Consensus 228 ~~R~~il~~~l~~~~~~~~~~l~~la~~t-~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 228 KGREEILKVHAKNKKLAPDVDLKAVARRT-PGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 88889888543 3 344577888887 55 778888888888766655566789999999999753
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-09 Score=108.41 Aligned_cols=133 Identities=25% Similarity=0.280 Sum_probs=90.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE----EEecCceeEeeccccCCC-CCCChhhhhhcc-cccCCCCCH-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI----TATNRGVTKIRGTAYSSP-HGIPIDLLDRMV-IIPTQPYQD-E 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I----laT~~~i~lI~~Ttenp~-~~Ip~~lLSR~~-ii~~~pys~-~ 248 (448)
.++|||||+|+|+...|+.|+.++++....+-. ..-+..+++|. |.||. ..+|+++++|+. .+.+.+... +
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~ivia--t~np~eg~l~~~LldRf~l~i~l~~p~~~e 209 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVG--SGNPEEGELRPQLLDRFGLHAEIRTVRDVE 209 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEe--ccccccCCCCHHHHhhcceEEECCCCCCHH
Confidence 389999999999999999999999874200000 00011112222 23332 358999999996 444544443 4
Q ss_pred HHHHHHHHh-----------------------------c------CCHHHHHHHHHHc--CCC-CHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILKIR-----------------------------L------MQTDGLRVLTKIA--LDT-SLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~~R-----------------------------a------i~deal~~La~~a--~~G-d~R~AL~lLe~a~~~a 290 (448)
+-.+|++.+ . ++++++++|++++ .+. +.|-++.++..|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 434444321 0 8899999998874 123 6899999999998887
Q ss_pred hhhCCCcccHHHHHHHHHHh
Q psy1686 291 RRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~lf 310 (448)
.-+|+..|+.+||+.+..+.
T Consensus 290 al~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 77888899999999998754
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=119.97 Aligned_cols=225 Identities=16% Similarity=0.182 Sum_probs=126.8
Q ss_pred ccccc-cccchhhhhhhH-HHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCCCCccccCCC
Q psy1686 38 KVSQG-MVGQLQARRAAG-VVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADVTKDLRCPDG 113 (448)
Q Consensus 38 ~~~~~-~VGQ~~~r~a~~-~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~~~fv~~p~g 113 (448)
..++. ..|++.+++..- .+..+...++..||++.+.|||..|||+ +++..+ .| .+|..+--|
T Consensus 318 ~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--------------~~~~~i~~~ 383 (784)
T PRK10787 318 EILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--------------RKYVRMALG 383 (784)
T ss_pred HHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEEcC
Confidence 33454 999999987632 1222333455678999999999558876 554322 22 133332112
Q ss_pred cccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHH--
Q psy1686 114 ELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIEC-- 191 (448)
Q Consensus 114 e~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~-- 191 (448)
.+. +...+. |....+.|. -...+.+.+.. .+. ...|+||||+|.+++..
T Consensus 384 ~~~------------d~~~i~----g~~~~~~g~---~~G~~~~~l~~-------~~~---~~~villDEidk~~~~~~g 434 (784)
T PRK10787 384 GVR------------DEAEIR----GHRRTYIGS---MPGKLIQKMAK-------VGV---KNPLFLLDEIDKMSSDMRG 434 (784)
T ss_pred CCC------------CHHHhc----cchhccCCC---CCcHHHHHHHh-------cCC---CCCEEEEEChhhcccccCC
Confidence 111 111110 111111111 11223333322 121 24799999999998875
Q ss_pred --HHHHHHhhhhcCCCeEE------EEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 192 --FSFLNRALESEMSPVVI------TATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 192 --f~~Llk~lEe~~~pi~I------laT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
+++|+.+++......|- -..-..+++|. |+ | ++.||++|||||.+|.|.+|+.+|+.+|.+...
T Consensus 435 ~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~-Ta-N-~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~ 511 (784)
T PRK10787 435 DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA-TS-N-SMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQI 511 (784)
T ss_pred CHHHHHHHHhccccEEEEecccccccccCCceEEEE-cC-C-CCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHH
Confidence 59999999852111110 00113344554 33 4 457999999999999999999999988865311
Q ss_pred -----------CCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH--hhh--hC---CCcccHHHHHHHHH
Q psy1686 259 -----------MQTDGLRVLTKIA-LDTSLRYAIQLITTASVV--CRR--RK---ATEICMEDIRKVYA 308 (448)
Q Consensus 259 -----------i~deal~~La~~a-~~Gd~R~AL~lLe~a~~~--a~~--~~---~~~It~e~V~~~~~ 308 (448)
++++++++|++.. .+-.+|..=..++..+.. +.. .+ ...|+.+++.+.++
T Consensus 512 ~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 512 ERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 9999999998742 122555544444443321 110 11 13688888888775
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=97.53 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhc---CCC-eEEEEecCceeEeeccccCCCCCC
Q psy1686 154 EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE---MSP-VVITATNRGVTKIRGTAYSSPHGI 229 (448)
Q Consensus 154 eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~p-i~IlaT~~~i~lI~~Ttenp~~~I 229 (448)
++...+...+......|+ +.|++|||+|.++.++++.|....+-. ... .++++.... +.. ..+.+.
T Consensus 106 ~~~~~l~~~l~~~~~~~~----~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~--~~~--~l~~~~-- 175 (269)
T TIGR03015 106 ALLRELEDFLIEQFAAGK----RALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE--FRE--TLQSPQ-- 175 (269)
T ss_pred HHHHHHHHHHHHHHhCCC----CeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH--HHH--HHcCch--
Confidence 334444444333334453 479999999999998888765433311 111 112111110 000 001111
Q ss_pred Chhhhhhc-ccccCCCCCHHHHHHHHHHhc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcc
Q psy1686 230 PIDLLDRM-VIIPTQPYQDEEIQAILKIRL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEI 298 (448)
Q Consensus 230 p~~lLSR~-~ii~~~pys~~eI~~IL~~Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~I 298 (448)
..++.+|+ ..+.+.|++.+|+.+.+..+. +++++++.|.+.+ +|++|....+...+...|...+...|
T Consensus 176 ~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s-~G~p~~i~~l~~~~~~~a~~~~~~~i 254 (269)
T TIGR03015 176 LQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS-RGIPRLINILCDRLLLSAFLEEKREI 254 (269)
T ss_pred hHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc-CCcccHHHHHHHHHHHHHHHcCCCCC
Confidence 24677885 488999999999999887543 8999999999999 99999988888888776655677889
Q ss_pred cHHHHHHHHHH
Q psy1686 299 CMEDIRKVYAL 309 (448)
Q Consensus 299 t~e~V~~~~~l 309 (448)
+.++|+.+..-
T Consensus 255 ~~~~v~~~~~~ 265 (269)
T TIGR03015 255 GGEEVREVIAE 265 (269)
T ss_pred CHHHHHHHHHH
Confidence 99999998864
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=120.41 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=125.1
Q ss_pred ccccccchhhhhhhHHHHHHH----hcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCc
Q psy1686 40 SQGMVGQLQARRAAGVVLGMI----KEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGE 114 (448)
Q Consensus 40 ~~~~VGQ~~~r~a~~~l~~mI----~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge 114 (448)
-++++||+.+.+. +.+.+ ..++..+|.+.++|||..|||+ |+..++ .+. .+|+.+..|.
T Consensus 319 ~~~~~G~~~~k~~---i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~-------~l~------~~~~~i~~~~ 382 (775)
T TIGR00763 319 DEDHYGLKKVKER---ILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK-------ALN------RKFVRFSLGG 382 (775)
T ss_pred hhhcCChHHHHHH---HHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH-------Hhc------CCeEEEeCCC
Confidence 3468999999865 33332 2344566778899999558875 553322 111 2444433332
Q ss_pred ccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHH---
Q psy1686 115 LQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIEC--- 191 (448)
Q Consensus 115 ~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~--- 191 (448)
+. +.+-......++ . +.....+++.+..+ +. ...|+||||||.+++..
T Consensus 383 ~~------------~~~~i~g~~~~~----~---g~~~g~i~~~l~~~-------~~---~~~villDEidk~~~~~~~~ 433 (775)
T TIGR00763 383 VR------------DEAEIRGHRRTY----V---GAMPGRIIQGLKKA-------KT---KNPLFLLDEIDKIGSSFRGD 433 (775)
T ss_pred cc------------cHHHHcCCCCce----e---CCCCchHHHHHHHh-------Cc---CCCEEEEechhhcCCccCCC
Confidence 21 111110000001 1 11223455443322 11 23699999999997643
Q ss_pred -HHHHHHhhhhcCCCeEE------EEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHh-------
Q psy1686 192 -FSFLNRALESEMSPVVI------TATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR------- 257 (448)
Q Consensus 192 -f~~Llk~lEe~~~pi~I------laT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~R------- 257 (448)
.++|+..++......|. -.....+++|. |.|+++.+|++|+|||.+|.|.+|+.+|..+|++..
T Consensus 434 ~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~--TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~ 511 (775)
T TIGR00763 434 PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA--TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALE 511 (775)
T ss_pred HHHHHHHhcCHHhcCccccccCCceeccCCEEEEE--ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 58899888742111110 00112334442 225588899999999999999999999998888631
Q ss_pred --c-------CCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH-hhh---hCC--------CcccHHHHHHHHH
Q psy1686 258 --L-------MQTDGLRVLTKIA-LDTSLRYAIQLITTASVV-CRR---RKA--------TEICMEDIRKVYA 308 (448)
Q Consensus 258 --a-------i~deal~~La~~a-~~Gd~R~AL~lLe~a~~~-a~~---~~~--------~~It~e~V~~~~~ 308 (448)
. ++++++.+|++.- .+.++|..-..++..... |.. .+. ..|+.+++++.++
T Consensus 512 ~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 512 DHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 0 8999999998853 233555554444443321 111 111 3678887777765
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=115.24 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=135.2
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCCC----C---CCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEVV----M---VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki----~---gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.+...|++++|++++.+...-+.+.++..+. . ..-+.++|||.+|||+ ++..++ +.+ .+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~-------e~~------~p 243 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG-------EAE------VP 243 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH-------HhC------CC
Confidence 3444589999999998887666666664432 1 0227889999558875 553322 111 24
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+.+...++ ...+.|.. .+.+|+.+..+. .+ .|.||||||+|.
T Consensus 244 ~i~is~s~f-------------------------~~~~~g~~---~~~vr~lF~~A~-----~~----~P~ILfIDEID~ 286 (638)
T CHL00176 244 FFSISGSEF-------------------------VEMFVGVG---AARVRDLFKKAK-----EN----SPCIVFIDEIDA 286 (638)
T ss_pred eeeccHHHH-------------------------HHHhhhhh---HHHHHHHHHHHh-----cC----CCcEEEEecchh
Confidence 544322221 11111210 145666665542 11 378999999999
Q ss_pred CC-----------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh--c-ccccCCCCCHHHHHH
Q psy1686 187 LD-----------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--M-VIIPTQPYQDEEIQA 252 (448)
Q Consensus 187 L~-----------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~-~ii~~~pys~~eI~~ 252 (448)
|. .+....|+..+.+-... ..+.++.+|++|+ .+..+.++++++ + ..+.+.+++.++-.+
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~----~~~~~ViVIaaTN--~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~ 360 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGF----KGNKGVIVIAATN--RVDILDAALLRPGRFDRQITVSLPDREGRLD 360 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhccc----cCCCCeeEEEecC--chHhhhhhhhccccCceEEEECCCCHHHHHH
Confidence 83 23344455444321100 0122233333331 256688888864 3 478899999999999
Q ss_pred HHHHhc-----CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 253 ILKIRL-----MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 253 IL~~Ra-----i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
||+..+ .++..+..|++.+ .| +.|+.-+++..|+..|..++...|+.+++++++...
T Consensus 361 IL~~~l~~~~~~~d~~l~~lA~~t-~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 361 ILKVHARNKKLSPDVSLELIARRT-PGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHhhcccchhHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 998654 4556688899988 55 888888888888776655677789999999998753
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-09 Score=103.94 Aligned_cols=117 Identities=10% Similarity=0.100 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCCh
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPI 231 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~ 231 (448)
+++|+.+.. ......+| .++|++||++|+++.++.|+|+|++||||.. +||+.|+. +..+++
T Consensus 72 dqIReL~~~-l~~~p~~g----~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~------------~~~LLp 134 (263)
T PRK06581 72 EQIRKLQDF-LSKTSAIS----GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR------------AASIIS 134 (263)
T ss_pred HHHHHHHHH-HhhCcccC----CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC------------hhhCch
Confidence 788875443 33333344 4599999999999999999999999999987 66777776 788999
Q ss_pred hhhhhcccccCCCCCHHHHHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 232 DLLDRMVIIPTQPYQDEEIQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 232 ~lLSR~~ii~~~pys~~eI~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
+++|||++++|+.-+..+..+....-. .+..-+++|.+.. .-|.-..+...+.+.
T Consensus 135 TIrSRCq~i~~~~p~~~~~~e~~~~~~~p~~~~~~l~~i~~~~-~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 135 TIRSRCFKINVRSSILHAYNELYSQFIQPIADNKTLDFINRFT-TKDRELWLDFIDNLL 192 (263)
T ss_pred hHhhceEEEeCCCCCHHHHHHHHHHhcccccccHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 999999999999988877776655333 6666788888886 556666665555443
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=103.58 Aligned_cols=216 Identities=20% Similarity=0.222 Sum_probs=141.7
Q ss_pred CCccccccccccchhhhhhhHHHHHHHhcCCCCC----CCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 34 LEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV----WPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 34 ~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g----pf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
..+.-.++++|||+.+.+.+.+|.+-+++-.--| -=+.|+|||.+|||. |+-.+ ++.+ .+|.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akala-------ne~k------vp~l 180 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALA-------NEAK------VPLL 180 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHh-------cccC------CceE
Confidence 3455568999999999999999999988754333 225678998557763 55332 2222 2344
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
....-+ +..-.-|+ =...||+.-..+ .+.-|+|+||||++-+.
T Consensus 181 ~vkat~-------------------------liGehVGd---gar~Ihely~rA---------~~~aPcivFiDE~DAia 223 (368)
T COG1223 181 LVKATE-------------------------LIGEHVGD---GARRIHELYERA---------RKAAPCIVFIDELDAIA 223 (368)
T ss_pred EechHH-------------------------HHHHHhhh---HHHHHHHHHHHH---------HhcCCeEEEehhhhhhh
Confidence 310000 00000111 113444433332 12358999999999872
Q ss_pred ------------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHH
Q psy1686 189 ------------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 189 ------------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~ 255 (448)
.+..|+|+.-+... -+|.|++.|++|+. |--+-+++.||+- -|.|+--+.+|...||+
T Consensus 224 LdRryQelRGDVsEiVNALLTelDgi-------~eneGVvtIaaTN~--p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile 294 (368)
T COG1223 224 LDRRYQELRGDVSEIVNALLTELDGI-------KENEGVVTIAATNR--PELLDPAIRSRFEEEIEFKLPNDEERLEILE 294 (368)
T ss_pred hhhhHHHhcccHHHHHHHHHHhccCc-------ccCCceEEEeecCC--hhhcCHHHHhhhhheeeeeCCChHHHHHHHH
Confidence 36778888777641 25777888887752 4457899999996 88888889999999998
Q ss_pred Hhc------CCHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 256 IRL------MQTDGLRVLTKIALDTSLRYAIQ-LITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 256 ~Ra------i~deal~~La~~a~~Gd~R~AL~-lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.-+ ++-. +++++..+.+-|.|+--. .|..|.--|..+++..|+.+|+++++..
T Consensus 295 ~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 295 YYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 655 4444 788888883448887654 4555554455577888999999999864
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=111.87 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=91.1
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE----EEecCceeEeeccccCCC-CCCChhhhhhcc-cccCCCCC-H
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVVI----TATNRGVTKIRGTAYSSP-HGIPIDLLDRMV-IIPTQPYQ-D 247 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I----laT~~~i~lI~~Ttenp~-~~Ip~~lLSR~~-ii~~~pys-~ 247 (448)
..++|||||||+|+..+++.|+.++|+....+-- ..-...+.+|.++ ||. ..++.+|++|+. .+.+.+.. .
T Consensus 126 ~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~--np~eg~l~~~L~dR~~l~i~v~~~~~~ 203 (633)
T TIGR02442 126 HRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM--NPEEGDLRPQLLDRFGLCVDVAAPRDP 203 (633)
T ss_pred CCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec--CCCCCCCCHHHHhhcceEEEccCCCch
Confidence 3479999999999999999999999964211000 0001123444433 332 458999999995 34444332 2
Q ss_pred HHHHHHHHH-----------------------------hc------CCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHH
Q psy1686 248 EEIQAILKI-----------------------------RL------MQTDGLRVLTKIAL--DT-SLRYAIQLITTASVV 289 (448)
Q Consensus 248 ~eI~~IL~~-----------------------------Ra------i~deal~~La~~a~--~G-d~R~AL~lLe~a~~~ 289 (448)
++-.++++. |. ++++++++|+.++. +- +.|-.+.++..|..+
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~ 283 (633)
T TIGR02442 204 EERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARAL 283 (633)
T ss_pred HHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 332222211 11 79999999998852 22 699999999999877
Q ss_pred hhhhCCCcccHHHHHHHHHHhc
Q psy1686 290 CRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 290 a~~~~~~~It~e~V~~~~~lf~ 311 (448)
|.-+++..|+.+||+++..+.+
T Consensus 284 AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 284 AALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHcCCCcCCHHHHHHHHHHHh
Confidence 7667889999999999998654
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-08 Score=101.78 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE----EEecCceeEeeccccCC-CCCCChhhhhhcc-cccCCCCCH-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI----TATNRGVTKIRGTAYSS-PHGIPIDLLDRMV-IIPTQPYQD-E 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I----laT~~~i~lI~~Ttenp-~~~Ip~~lLSR~~-ii~~~pys~-~ 248 (448)
.++||||||++|+...|+.|+.++|+....+-. ..-...+.+|. |.|| -..+|+++++||. .+.+.+-.. +
T Consensus 129 ~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA--t~NP~e~~l~~aLldRF~~~v~v~~~~~~~ 206 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG--SGNPEEGELRPQLLDRFGLSVEVRSPRDVE 206 (334)
T ss_pred CCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe--cCCcccCCCCHHHHhhcceEEEcCCCCcHH
Confidence 479999999999999999999999874200000 00001112222 2333 2348999999985 344433322 2
Q ss_pred HHHHHH-----------------------------HHhc------CCHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHh
Q psy1686 249 EIQAIL-----------------------------KIRL------MQTDGLRVLTKIA---LDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL-----------------------------~~Ra------i~deal~~La~~a---~~Gd~R~AL~lLe~a~~~a 290 (448)
+=.+++ ..|. ++++.+++|++++ ...+.|-.+.++..|...|
T Consensus 207 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A 286 (334)
T PRK13407 207 TRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALA 286 (334)
T ss_pred HHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 222222 2221 8999999999884 2348999999999998888
Q ss_pred hhhCCCcccHHHHHHHHHH
Q psy1686 291 RRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~l 309 (448)
-.+|+..|+.+||+.+...
T Consensus 287 ~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 287 AFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred HHcCCCeeCHHHHHHHHHH
Confidence 7788889999999988754
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=104.91 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=88.7
Q ss_pred eEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCH
Q psy1686 177 GVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQD 247 (448)
Q Consensus 177 ~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~ 247 (448)
++|+|||+|.+.. +.|+.|+..++.. .++ |++++.. .....++.+.+.||+ +++.++|++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~i-iits~~~--------p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQI-VLTSDRP--------PKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCE-EEecCCC--------HHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 7999999999843 2344455555531 233 3333331 011122456789998 4799999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++...||+.++ ++++++++|++.. .+|+|....+|.....+|.. .+..||.+.+++++...
T Consensus 271 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~-~~~~r~l~~~l~~l~~~a~~-~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELPDEVLEFIAKNI-RSNVRELEGALNRLLAYASL-TGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHh
Confidence 99999999877 9999999999998 99999988888887666643 34579999999988743
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.7e-09 Score=107.96 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=76.3
Q ss_pred cCeEEEEeccCCCCHH--------------HHHHHHHhhhhcC-------------CCeEEEEecCceeEeeccc-----
Q psy1686 175 VPGVLFIDEVHMLDIE--------------CFSFLNRALESEM-------------SPVVITATNRGVTKIRGTA----- 222 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~--------------~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI~~Tt----- 222 (448)
.++|+||||||.++.. .|++|++.+|... .+.+++.|+.-....+|+-
T Consensus 173 ~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~ 252 (412)
T PRK05342 173 QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEK 252 (412)
T ss_pred CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHH
Confidence 3699999999999753 8999999998642 1245555554322222220
Q ss_pred ----------------cC--------------------CCCCCChhhhhhcc-cccCCCCCHHHHHHHHHH---------
Q psy1686 223 ----------------YS--------------------SPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKI--------- 256 (448)
Q Consensus 223 ----------------en--------------------p~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~--------- 256 (448)
.. --|++.|+|+.|+- |+.|+||+.+++.+|+..
T Consensus 253 ~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~ 332 (412)
T PRK05342 253 IIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQY 332 (412)
T ss_pred HHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 01246899999995 889999999999999862
Q ss_pred --hc--------CCHHHHHHHHHHcC--CCCHHHHHHHHHHH
Q psy1686 257 --RL--------MQTDGLRVLTKIAL--DTSLRYAIQLITTA 286 (448)
Q Consensus 257 --Ra--------i~deal~~La~~a~--~Gd~R~AL~lLe~a 286 (448)
+. ++++++++|++.|. +..+|-.-.+++..
T Consensus 333 ~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 333 QKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred HHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 00 99999999999752 23555555555543
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-08 Score=104.94 Aligned_cols=123 Identities=15% Similarity=0.309 Sum_probs=90.3
Q ss_pred CeEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys 246 (448)
.+||+|||+|.+.. +.|..++..+++ -. .+|++++. ..+....+.+.|.||| +++.++|++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k-~IIlts~~--------~p~~l~~l~~rL~SR~~~Gl~~~l~~pd 272 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GK-LIVISSTC--------APQDLKAMEERLISRFEWGIAIPLHPLT 272 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CC-cEEEecCC--------CHHHHhhhHHHHHhhhcCCeEEecCCCC
Confidence 48999999999953 234444444442 12 23333332 1222345678999999 799999999
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhhhhCCCcccHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTAS---VVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 247 ~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~---~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.++...||+.++ ++++++++|+... .+|+|...+.|.... .++. -.+..||.+.+++++.-+
T Consensus 273 ~e~r~~iL~~k~~~~~~~l~~evl~~la~~~-~~dir~L~g~l~~l~~~~a~~~-~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 273 KEGLRSFLERKAEALSIRIEETALDFLIEAL-SSNVKSLLHALTLLAKRVAYKK-LSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-hhCCCCCHHHHHHHHHHh
Confidence 999999999777 9999999999998 899999999999885 2332 233579999999988743
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-09 Score=117.04 Aligned_cols=120 Identities=23% Similarity=0.187 Sum_probs=92.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH--------HHHHHHHHhhhhcCCCeEEEEecCceeEeec
Q psy1686 149 GEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI--------ECFSFLNRALESEMSPVVITATNRGVTKIRG 220 (448)
Q Consensus 149 ~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~--------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~ 220 (448)
+|.-+.+++.++.+. ..+ +.||||||+|.|.. ++.+.|.++++ .+.+.+|++
T Consensus 254 ge~e~rl~~i~~~~~----~~~-----~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-----------rg~l~~Iga 313 (821)
T CHL00095 254 GEFEERLKRIFDEIQ----ENN-----NIILVIDEVHTLIGAGAAEGAIDAANILKPALA-----------RGELQCIGA 313 (821)
T ss_pred cHHHHHHHHHHHHHH----hcC-----CeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-----------CCCcEEEEe
Confidence 444456666665542 122 47999999999843 45777877777 578899999
Q ss_pred cccCCC---CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------CCHHHHHHHHHHcCCC---C---HHHHHH
Q psy1686 221 TAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------MQTDGLRVLTKIALDT---S---LRYAIQ 281 (448)
Q Consensus 221 Ttenp~---~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------i~deal~~La~~a~~G---d---~R~AL~ 281 (448)
||..++ +...+.|.+||..+.+.+.+.++...|++.-. ++++++..++++| ++ | ++.|+.
T Consensus 314 Tt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls-~~yi~~r~lPdkaid 392 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS-DQYIADRFLPDKAID 392 (821)
T ss_pred CCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCccccCchHHHH
Confidence 997665 66788999999999999999999988886311 8999999999998 43 4 889999
Q ss_pred HHHHHHHH
Q psy1686 282 LITTASVV 289 (448)
Q Consensus 282 lLe~a~~~ 289 (448)
+|+.|+..
T Consensus 393 lld~a~a~ 400 (821)
T CHL00095 393 LLDEAGSR 400 (821)
T ss_pred HHHHHHHH
Confidence 99998653
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=111.26 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=94.7
Q ss_pred CeEEEEeccCCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC---CCCCChhhhhhcccccCC
Q psy1686 176 PGVLFIDEVHMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS---PHGIPIDLLDRMVIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp---~~~Ip~~lLSR~~ii~~~ 243 (448)
++||||||||.|- .+..+.|.++++ .+.+.+|++||... ++...++|.+||..|.+.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-----------~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ 347 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 347 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-----------CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeC
Confidence 5899999999981 244566777766 57788999998654 467899999999999999
Q ss_pred CCCHHHHHHHHHHhc----------CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhh----hhCCCcccHHHHH
Q psy1686 244 PYQDEEIQAILKIRL----------MQTDGLRVLTKIALD-----TSLRYAIQLITTASVVCR----RRKATEICMEDIR 304 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----------i~deal~~La~~a~~-----Gd~R~AL~lLe~a~~~a~----~~~~~~It~e~V~ 304 (448)
+.+.++..+||+... |+++|+..+++++.. .=+..|+.+|+.|+.... ......|+.++|.
T Consensus 348 ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~ 427 (758)
T PRK11034 348 EPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIE 427 (758)
T ss_pred CCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHH
Confidence 999999999998422 999999988887633 234499999999864321 1123468999999
Q ss_pred HHHHH
Q psy1686 305 KVYAL 309 (448)
Q Consensus 305 ~~~~l 309 (448)
++++.
T Consensus 428 ~v~~~ 432 (758)
T PRK11034 428 SVVAR 432 (758)
T ss_pred HHHHH
Confidence 98864
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-08 Score=101.03 Aligned_cols=123 Identities=28% Similarity=0.308 Sum_probs=89.3
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhhhhcC-----CC-eEEEEecCceeEeeccccCCCCCCChhhhh--h
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRALESEM-----SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--R 236 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~~-----~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R 236 (448)
|+|+||||+|.| +.+.+..|+..+.+-. .+ .||.+||. +..++++++. |
T Consensus 225 p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~------------~~~ld~allRpgR 292 (389)
T PRK03992 225 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR------------IDILDPAILRPGR 292 (389)
T ss_pred CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC------------hhhCCHHHcCCcc
Confidence 689999999998 2445555655554321 12 34444443 5678899885 6
Q ss_pred cc-cccCCCCCHHHHHHHHHHhc----CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 237 MV-IIPTQPYQDEEIQAILKIRL----MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 237 ~~-ii~~~pys~~eI~~IL~~Ra----i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+- .+.+.+++.++-.+|++... +++ --+..|++.+.+-+.++.-.+...|...|..++...|+.+|+.+++...
T Consensus 293 fd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred CceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 63 79999999999999998654 433 3467788887333888888889999888876677789999999998754
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-08 Score=103.05 Aligned_cols=123 Identities=16% Similarity=0.293 Sum_probs=89.6
Q ss_pred CeEEEEeccCCCC--H----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLD--I----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~--~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys 246 (448)
.++|+|||+|.+. . +-|..++..++. -. .+|+++++.-. + -..+-+.|.||+ +++.++|++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k-~iIltsd~~P~------~--l~~l~~rL~SR~~~Gl~~~L~~pd 276 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DK-QLFFSSDKSPE------L--LNGFDNRLITRFNMGLSIAIQKLD 276 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CC-cEEEECCCCHH------H--HhhccHHHHHHHhCCceeccCCcC
Confidence 4799999999995 2 234444444443 12 33444444100 0 012457899998 499999999
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhC-CCcccHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL--------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRK-ATEICMEDIRKVYAL 309 (448)
Q Consensus 247 ~~eI~~IL~~Ra--------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~-~~~It~e~V~~~~~l 309 (448)
.++..+||+.++ ++++++++|++.+ +||+|.++++|.++...+.... +..||.+.|++++.-
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~-~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYY-SDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 999999998655 8899999999999 9999999999999875554321 357999999998864
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-08 Score=111.81 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=71.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeec--------ccc----CCC-----
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRG--------TAY----SSP----- 226 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~--------Tte----np~----- 226 (448)
+.|+++|||+..+++.+++|++++|+.. . .+||+.||-+...|.. ++. ...
T Consensus 612 ~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~ 691 (821)
T CHL00095 612 YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLS 691 (821)
T ss_pred CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHH
Confidence 3899999999999999999999999842 2 2788888876533211 000 000
Q ss_pred --------CCCChhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 227 --------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 227 --------~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
...+|+|++|+ .||.|+||+.+++.+|++... ++++++++|++.+
T Consensus 692 ~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 692 NLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 01468999999 799999999999999987321 7888888887765
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.3e-08 Score=109.16 Aligned_cols=111 Identities=17% Similarity=0.309 Sum_probs=85.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeeccccC----CC-------------
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRGTAYS----SP------------- 226 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~Tten----p~------------- 226 (448)
+.|+++|||+..+++.++.|+..+++.. . .+||+.||-+...+.....+ |-
T Consensus 669 ~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (852)
T TIGR03345 669 YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELL 748 (852)
T ss_pred CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHH
Confidence 4899999999999999999999998774 2 37778878655322111000 10
Q ss_pred CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------------CCHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Q psy1686 227 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------------MQTDGLRVLTKIALDT---SLRYAIQLITTAS 287 (448)
Q Consensus 227 ~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------------i~deal~~La~~a~~G---d~R~AL~lLe~a~ 287 (448)
...+++|++||.+|.|+||+.+++.+|++... ++++++++|++.+ .+ ++|-..++|+.-.
T Consensus 749 ~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g-~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 749 KVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC-TEVESGARNIDAILNQTL 827 (852)
T ss_pred HhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc-CCCCCChHHHHHHHHHHH
Confidence 11579999999999999999999988876311 9999999999998 44 8999988888654
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=98.16 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=88.6
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCCCCCCCh------hhhhhcc-
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSSPHGIPI------DLLDRMV- 238 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~------~lLSR~~- 238 (448)
.++|+|||+++++..|+.|+.+++|-. .|.++.|||. +|. ++++|++
T Consensus 109 ~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~---------------LPE~g~~leAL~DRFli 173 (498)
T PRK13531 109 EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE---------------LPEADSSLEALYDRMLI 173 (498)
T ss_pred cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC---------------CcccCCchHHhHhhEEE
Confidence 589999999999999999999997643 2355555543 564 8999996
Q ss_pred cccCCCCC-HHHHHHHHHHh-----c------------------------CCHHHHHHHHHHc-----CC----CCHHHH
Q psy1686 239 IIPTQPYQ-DEEIQAILKIR-----L------------------------MQTDGLRVLTKIA-----LD----TSLRYA 279 (448)
Q Consensus 239 ii~~~pys-~~eI~~IL~~R-----a------------------------i~deal~~La~~a-----~~----Gd~R~A 279 (448)
-+.+.|++ .++..++|... . ++++++++|.++. .+ -|.|..
T Consensus 174 ri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~ 253 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW 253 (498)
T ss_pred EEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH
Confidence 46777776 35546666421 0 8899999998884 12 489999
Q ss_pred HHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 280 IQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 280 L~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+.++..+...|.-.|+..|+.+||. ++.
T Consensus 254 ~~l~~~akA~A~l~GR~~V~p~Dv~-ll~ 281 (498)
T PRK13531 254 KKAIRLLQASAFFSGRDAIAPIDLI-LLK 281 (498)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH-HhH
Confidence 9999998887877889999999999 543
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=100.09 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=89.4
Q ss_pred CeEEEEeccCCCC-H-----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCC--CCChhhhhhcc---cccCCC
Q psy1686 176 PGVLFIDEVHMLD-I-----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPH--GIPIDLLDRMV---IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~-~-----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~--~Ip~~lLSR~~---ii~~~p 244 (448)
+++|+|||+|.+. + +.|..++..++.. . .+|++++. .|.. .+.+.+.||+. ++.++|
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k-~iIitsd~----------~p~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-K-QIVICSDR----------EPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-C-eEEEECCC----------CHHHHHHHHHHHhhHHhcCceEeeCC
Confidence 4899999999883 2 3455555555531 1 23333322 1111 24567899986 999999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
++.+....||+.++ ++++++++|++.. .||+|....+|.....++.. .+..||.+.+++++.-+
T Consensus 263 pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~-~~~~R~L~g~l~~l~~~~~~-~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 263 PDEETRKKIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKET-TGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHH
Confidence 99999999999766 9999999999999 99999999999988666543 34579999999998744
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=94.96 Aligned_cols=123 Identities=28% Similarity=0.290 Sum_probs=86.7
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhh---c--CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALES---E--MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe---~--~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
.|.|+||||+|.|. .+.+..|+..+.+ . ..+ .||++||. +..++++++.
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~------------~~~ld~al~r~g 282 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR------------PDILDPALLRPG 282 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC------------hhhCChhhcCcc
Confidence 36899999999983 3344445444432 1 123 34444444 5678888884
Q ss_pred hc-ccccCCCCCHHHHHHHHHHhc----CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 236 RM-VIIPTQPYQDEEIQAILKIRL----MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 236 R~-~ii~~~pys~~eI~~IL~~Ra----i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+ ..+.+.+++.++-.+|++... +.+ --++.|++.+.+-+.++.-++...|...|..+++..|+.+|+.+++..
T Consensus 283 rfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 283 RFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred cCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 55 378999999999999988644 333 247788888833377787788888888887677788999999998864
|
Many proteins may score above the trusted cutoff because an internal |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=95.17 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=87.4
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHH---HhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLN---RALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Ll---k~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
.|.|+||||++.+. .+.+..+. ..++.... + .+|++||. +..++++++.
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~------------~d~LDpAllR~G 305 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR------------ADTLDPALLRPG 305 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC------------chhCCHHHcCCC
Confidence 37999999999872 23333333 33433211 2 45555554 6789999886
Q ss_pred hcc-cccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 236 RMV-IIPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 236 R~~-ii~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+- .|.|.+++.++-.+|++... ++++ -++.+++.+.+-+.++--++...|...|..++...|+.+|+.+++..
T Consensus 306 Rfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 306 RLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred cccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 553 68999999998777777432 3332 36677888744499999999999988887677778999999999876
Q ss_pred hc
Q psy1686 310 FL 311 (448)
Q Consensus 310 f~ 311 (448)
..
T Consensus 386 v~ 387 (398)
T PTZ00454 386 VV 387 (398)
T ss_pred HH
Confidence 43
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=106.21 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=71.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeE-----eeccccCC--------CCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTK-----IRGTAYSS--------PHGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~l-----I~~Ttenp--------~~~Ip 230 (448)
++|+|+||||.++++.|+.|++.+++.. . .+||++||.+... +|-....+ -...+
T Consensus 558 ~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~ 637 (758)
T PRK11034 558 HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_pred CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcC
Confidence 4899999999999999999999999652 1 2678888855311 11110000 12367
Q ss_pred hhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
|+|+.|+- ++.|.|++.+++.+|++... ++++++++|++.+
T Consensus 638 pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhC
Confidence 99999996 99999999999999887422 7888888888765
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=98.87 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=87.4
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHH---HhhhhcC---CCeEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLN---RALESEM---SPVVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Ll---k~lEe~~---~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
.|.|+|||||+.+. .+.+..|+ ..++... .-.||+|||. +..++++++.
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr------------~d~LDpaLlRpG 343 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR------------IESLDPALIRPG 343 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC------------hHHhhHHhccCC
Confidence 36899999999873 12233333 3333211 1255566665 6678888874
Q ss_pred hcc-cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 236 RMV-IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 236 R~~-ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+- .|.|.+++.++..+|++... +++++ ++.++..+.+-+..+.-+++..|...|..+++..|+.+|+.+++..
T Consensus 344 Rfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 344 RIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 663 89999999999999998654 44443 5667777644588888888888988887777788999999999875
Q ss_pred h
Q psy1686 310 F 310 (448)
Q Consensus 310 f 310 (448)
.
T Consensus 424 v 424 (438)
T PTZ00361 424 V 424 (438)
T ss_pred H
Confidence 3
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.4e-07 Score=96.22 Aligned_cols=221 Identities=21% Similarity=0.199 Sum_probs=135.1
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHH-----HhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGM-----IKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~m-----I~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
++-+...|...++++.|.+.+.+...-.... -+.|--..--+.++|||.+|||. |+.. |.+++.
T Consensus 216 ~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkai-------A~e~~~--- 285 (489)
T CHL00195 216 EILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAI-------ANDWQL--- 285 (489)
T ss_pred ccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHH-------HHHhCC---
Confidence 3444555666689999998887543221111 11121111127789999558874 5533 222221
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
.|.. +|+. .++++-.+|=...+|+.+..+.. ..|.|+|||
T Consensus 286 ---~~~~--------------------l~~~--------~l~~~~vGese~~l~~~f~~A~~---------~~P~IL~ID 325 (489)
T CHL00195 286 ---PLLR--------------------LDVG--------KLFGGIVGESESRMRQMIRIAEA---------LSPCILWID 325 (489)
T ss_pred ---CEEE--------------------EEhH--------HhcccccChHHHHHHHHHHHHHh---------cCCcEEEeh
Confidence 3333 2221 12333333333567666654321 147999999
Q ss_pred ccCCCCH------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCCH
Q psy1686 183 EVHMLDI------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQD 247 (448)
Q Consensus 183 EVH~L~~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys~ 247 (448)
||+.+.. ..++.|+..+++...|+|+++|+. .+..+|++++. |+- +|.+...+.
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN-----------~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN-----------NIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC-----------ChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 9997622 245667777777666766555543 26779999985 774 788888888
Q ss_pred HHHHHHHHHhc-------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 248 EEIQAILKIRL-------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 248 ~eI~~IL~~Ra-------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
++-.+|++... .++.-++.|++.+.+-+.++--++...|...|..+ +..++.+|+..++..+.
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-~~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-KREFTTDDILLALKQFI 464 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcC
Confidence 88888887433 23455888999984447777777777777666533 45799999999987654
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.9e-07 Score=94.75 Aligned_cols=226 Identities=18% Similarity=0.207 Sum_probs=143.1
Q ss_pred cCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhhhhhhccCccccccCCCcc
Q psy1686 23 SHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 23 sHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~I~~~~gk~~a~~~d~~~~ 102 (448)
....-+++...+.|++.|+.||.=..-+-|.......-++.--+.+|+.+||+...|||= ...+-|. .... .+
T Consensus 69 ~~~~q~~~~~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTH--Ll~Aign----~~~~-~~ 141 (408)
T COG0593 69 SAPAQLPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTH--LLQAIGN----EALA-NG 141 (408)
T ss_pred ccccccCccccCCCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHH--HHHHHHH----HHHh-hC
Confidence 334455665678899999999987777666655555544322245677899987337752 1111110 0000 11
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHH-HHHHHHHHHHHhCcccccCeEEEE
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVRE-QISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~-~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
++..+++. +--|..|.- + ..+|+ .+++-. +.| .-++++|
T Consensus 142 ~~a~v~y~-----------------~se~f~~~~---v------------~a~~~~~~~~Fk-------~~y-~~dlllI 181 (408)
T COG0593 142 PNARVVYL-----------------TSEDFTNDF---V------------KALRDNEMEKFK-------EKY-SLDLLLI 181 (408)
T ss_pred CCceEEec-----------------cHHHHHHHH---H------------HHHHhhhHHHHH-------Hhh-ccCeeee
Confidence 22233330 000000000 1 12222 122211 122 2378999
Q ss_pred eccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCC---hhhhhhc---ccccCCCCCHHH
Q psy1686 182 DEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIP---IDLLDRM---VIIPTQPYQDEE 249 (448)
Q Consensus 182 DEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip---~~lLSR~---~ii~~~pys~~e 249 (448)
|+++.|.. +-|+.+|...+..- .++++.++ ||..++ +.|.||+ +++.+.|.+.+.
T Consensus 182 DDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr-----------~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 182 DDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDR-----------PPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred chHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCC-----------CchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 99999943 56888888888522 33333332 466665 7899997 599999999999
Q ss_pred HHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 250 IQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 250 I~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
...||..++ ++++++++|++.- ..|+|....+|++...+|.. .+..||.+.|++++.-+
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l~~~a~~-~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRLDAFALF-TKRAITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHh-cCccCcHHHHHHHHHHh
Confidence 999999766 9999999999998 88999999999998877653 34489999999998754
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-07 Score=103.46 Aligned_cols=96 Identities=17% Similarity=0.316 Sum_probs=70.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeec-----cccCC--------CCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRG-----TAYSS--------PHGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~-----Ttenp--------~~~Ip 230 (448)
++|+|+||||.++++.++.|++.+++.. . .+||++||-+...+.. ..+.+ -...+
T Consensus 554 ~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~ 633 (731)
T TIGR02639 554 HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFS 633 (731)
T ss_pred CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcC
Confidence 4899999999999999999999999752 2 2577777665322211 00100 11257
Q ss_pred hhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
|+|++|+- +|.|+||+.+++.+|++... ++++++++|++.+
T Consensus 634 pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 634 PEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred hHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhC
Confidence 89999995 99999999999999987421 7888888888765
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=95.47 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=77.0
Q ss_pred cCeEEEEeccCCCCH--------------HHHHHHHHhhhhcC-------------CCeEEEEecCceeEe-ecc-----
Q psy1686 175 VPGVLFIDEVHMLDI--------------ECFSFLNRALESEM-------------SPVVITATNRGVTKI-RGT----- 221 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI-~~T----- 221 (448)
.++|+||||||.+.+ ..|+.|++.+|... .+.+++.|.. +.+| +|+
T Consensus 181 ~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsN-ilfi~~Gaf~g~~ 259 (413)
T TIGR00382 181 QKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSN-ILFICGGAFVGLE 259 (413)
T ss_pred ccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCC-ceeeecccccChH
Confidence 358999999999976 68999999997543 1234444443 2111 110
Q ss_pred ----------------c-cC-C----------------CCCCChhhhhhcc-cccCCCCCHHHHHHHHHHh----c----
Q psy1686 222 ----------------A-YS-S----------------PHGIPIDLLDRMV-IIPTQPYQDEEIQAILKIR----L---- 258 (448)
Q Consensus 222 ----------------t-en-p----------------~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~R----a---- 258 (448)
+ .. . -|+++|+|+.|+- |+.|+||+.+++.+|+... .
T Consensus 260 ~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~ 339 (413)
T TIGR00382 260 KIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQ 339 (413)
T ss_pred HHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 2357899999994 8899999999999998641 0
Q ss_pred -----------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Q psy1686 259 -----------MQTDGLRVLTKIAL--DTSLRYAIQLITTAS 287 (448)
Q Consensus 259 -----------i~deal~~La~~a~--~Gd~R~AL~lLe~a~ 287 (448)
++++|+++|++.|. ...+|-.-.+++...
T Consensus 340 ~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 340 ALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred HHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 89999999999863 336666666666554
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-07 Score=87.31 Aligned_cols=106 Identities=19% Similarity=0.271 Sum_probs=71.7
Q ss_pred CeEEEEeccCCCCHHH--HHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIEC--FSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~--f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~ 248 (448)
.++|+||++|.+.... +..|...++... ...+|++++. ...-.-.+.++|.||+ +++.++|.+.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~--------~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR--------PPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS---------TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC--------CCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 3899999999996532 444444444322 1233333333 1111224678999997 49999999999
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
+..+||+.++ ++++++++|++.. .+|+|....+|.+...++
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Confidence 9999999777 9999999999998 899999999999876654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=96.43 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=92.5
Q ss_pred CeEEEEeccCCCCH------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDI------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys 246 (448)
.+||+|||+|.+.. +.|+.++..++.. .+ +|++++.. ....-.+.+.|.||+ +++.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-k~-IIITSd~~--------P~eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-KQ-IVLSSDRP--------PKQLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcC-CC-EEEecCCC--------hHhhhhccHHHHhhhhcCceEEcCCCC
Confidence 48999999999932 4567777766631 22 33344431 011123678899998 599999999
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 247 ~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+....||+.++ ++++++++|++.. .+|+|....+|.+...++.. .+..||.+.+++++..+
T Consensus 448 ~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~-~rnvR~LegaL~rL~a~a~~-~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 448 LETRIAILRKKAVQEQLNAPPEVLEFIASRI-SRNIRELEGALIRVTAFASL-NRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHh
Confidence 999999999777 9999999999998 88999999999988666643 34579999999988754
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.7e-07 Score=101.89 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=80.4
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeeccccC-------------CCCCCCh
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRGTAYS-------------SPHGIPI 231 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~Tten-------------p~~~Ip~ 231 (448)
.|+|+|||+.++++.++.|+.++++.. . .+||++||-+...+.....+ -....++
T Consensus 669 ~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~p 748 (852)
T TIGR03346 669 SVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRP 748 (852)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCH
Confidence 699999999999999999999998863 2 36777777654322110000 0122578
Q ss_pred hhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Q psy1686 232 DLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL--DTSLRYAIQLITTAS 287 (448)
Q Consensus 232 ~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~--~Gd~R~AL~lLe~a~ 287 (448)
+|+.|+ .++.|.|++.+++.+|+.... ++++++++|++.+. .+++|.--+.++...
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 999999 599999999999998877311 78888888888764 567777666666543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=97.48 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=123.7
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc-----------C--CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCc
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE-----------E--VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWL 101 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~--ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~ 101 (448)
|...++++.|++.+++. |.+++.. | .-.| +.++|||..|||+ ++..+ .+.+
T Consensus 448 ~~~~~~di~g~~~~k~~---l~~~v~~~~~~~~~~~~~g~~~~~g--iLL~GppGtGKT~lakalA-------~e~~--- 512 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQE---LREAVEWPLKHPEIFEKMGIRPPKG--VLLFGPPGTGKTLLAKAVA-------TESG--- 512 (733)
T ss_pred cccchhhcccHHHHHHH---HHHHHHhhhhCHHHHHhcCCCCCce--EEEECCCCCCHHHHHHHHH-------HhcC---
Confidence 45458999999999866 4554431 1 1124 6789999558875 55332 2222
Q ss_pred cCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 102 ADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 102 ~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
..|+.+...+ +++.-.+|--..+|+....+.. ..|.|+||
T Consensus 513 ---~~fi~v~~~~----------------------------l~~~~vGese~~i~~~f~~A~~---------~~p~iifi 552 (733)
T TIGR01243 513 ---ANFIAVRGPE----------------------------ILSKWVGESEKAIREIFRKARQ---------AAPAIIFF 552 (733)
T ss_pred ---CCEEEEehHH----------------------------HhhcccCcHHHHHHHHHHHHHh---------cCCEEEEE
Confidence 2444421111 1112222323556766655421 13799999
Q ss_pred eccCCCCH------------HHHHHHHHhhhhc--CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCC
Q psy1686 182 DEVHMLDI------------ECFSFLNRALESE--MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQ 243 (448)
Q Consensus 182 DEVH~L~~------------~~f~~Llk~lEe~--~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~ 243 (448)
||++.|.. ...+.|+..++.. ... +||.+||+ |..+.++++. ||- ++.+.
T Consensus 553 DEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~------------~~~ld~allRpgRfd~~i~v~ 620 (733)
T TIGR01243 553 DEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNR------------PDILDPALLRPGRFDRLILVP 620 (733)
T ss_pred EChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCC------------hhhCCHhhcCCCccceEEEeC
Confidence 99998831 3456666666632 122 44444444 7789999984 885 88899
Q ss_pred CCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhC------------------CCcccH
Q psy1686 244 PYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRK------------------ATEICM 300 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~------------------~~~It~ 300 (448)
+.+.++-.+|++... ++++ -++.|++.+.+-+..+--++...|...|..+. ...|+.
T Consensus 621 ~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 700 (733)
T TIGR01243 621 PPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEM 700 (733)
T ss_pred CcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccH
Confidence 999999999987433 4333 47889998833377777777777766553211 124777
Q ss_pred HHHHHHHHH
Q psy1686 301 EDIRKVYAL 309 (448)
Q Consensus 301 e~V~~~~~l 309 (448)
+|..+++..
T Consensus 701 ~~f~~al~~ 709 (733)
T TIGR01243 701 RHFLEALKK 709 (733)
T ss_pred HHHHHHHHH
Confidence 777776653
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=99.08 Aligned_cols=96 Identities=23% Similarity=0.411 Sum_probs=68.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEe----eccc---------cCCCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKI----RGTA---------YSSPHGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI----~~Tt---------enp~~~Ip 230 (448)
++||||||++.++.+.++.|++.+++.. . .+||++||-+...+ +..+ ..--....
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 750 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFR 750 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccccc
Confidence 3799999999999999999999998752 2 25777777643221 1100 00012357
Q ss_pred hhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
++|++|+ .++.|.|++.+++.+|++... ++++++++|++.+
T Consensus 751 PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 751 PEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcC
Confidence 8999999 799999999999988876311 6777777776665
|
|
| >KOG1514|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.7e-06 Score=91.46 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=110.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCC---eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSP---VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDEE 249 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~e 249 (448)
.+.|+.|||.+-|-...|+.|+...+=|-+| .+|++--. |-.-|---++.-.=||.. -+.|+||+.++
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN-------TmdlPEr~l~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN-------TMDLPERLLMNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc-------cccCHHHHhccchhhhccceeeecCCCCHHH
Confidence 4699999999999888888888888766655 33332222 211111112222335653 78999999999
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhhhhCC-------CcccHHHHHHHHHHhcch--
Q psy1686 250 IQAILKIRL-----MQTDGLRVLTKI--ALDTSLRYAIQLITTASVVCRRRKA-------TEICMEDIRKVYALFLDE-- 313 (448)
Q Consensus 250 I~~IL~~Ra-----i~deal~~La~~--a~~Gd~R~AL~lLe~a~~~a~~~~~-------~~It~e~V~~~~~lf~D~-- 313 (448)
|.+|+..|. ++.+|.+++|+. |..||+|.|+.+.++|..+|..+.. ..|+.-+|.++..-+++.
T Consensus 581 Lq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 581 LQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 999998776 889999999987 5789999999999999999875443 468999999998866654
Q ss_pred hHHHHHHHHHHhhhhh
Q psy1686 314 GRSTQYLREHQNEYMF 329 (448)
Q Consensus 314 ~~s~~~L~~~~~~~l~ 329 (448)
-..++.|.-+++.|++
T Consensus 661 ~~~i~glS~~~k~fl~ 676 (767)
T KOG1514|consen 661 IKALKGLSFLQKIFLT 676 (767)
T ss_pred HHHhcchHHHHHHHHH
Confidence 5677788888888776
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.8e-06 Score=83.74 Aligned_cols=122 Identities=31% Similarity=0.376 Sum_probs=85.6
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhhhhcC--CC----eEEEEecCceeEeeccccCCCCCCChhhh----
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRALESEM--SP----VVITATNRGVTKIRGTAYSSPHGIPIDLL---- 234 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~~--~p----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lL---- 234 (448)
|.|+|||||+.. +.+.|--++..+-+-. .| .+|+|||+ +--+-|+||
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR------------~D~LDPALLRPGR 312 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR------------PDILDPALLRPGR 312 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC------------ccccChhhcCCCc
Confidence 899999999987 3466666666654432 22 89999998 444545554
Q ss_pred -hhcccccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 235 -DRMVIIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 235 -SR~~ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+| .|.|..-+.+-=.+||++.+ +++++ ++.|++...+.|.-+--++-.-|..+|.++.+..||.+|..+++.
T Consensus 313 ~DR--kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 313 FDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred ccc--eeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHH
Confidence 44 46666556555567777655 55554 788888873446666666677888889877888999999999987
Q ss_pred Hhc
Q psy1686 309 LFL 311 (448)
Q Consensus 309 lf~ 311 (448)
...
T Consensus 391 KV~ 393 (406)
T COG1222 391 KVV 393 (406)
T ss_pred HHH
Confidence 543
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=89.66 Aligned_cols=210 Identities=17% Similarity=0.247 Sum_probs=127.5
Q ss_pred cccccccccchhhhhhhHHHHHHHhcC--------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 37 RKVSQGMVGQLQARRAAGVVLGMIKEE--------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 37 ~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
...++++.|...+.....-+.+..+.. +++ +-+.++||+.+|||+ ++... .+.+ .+|
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~gill~G~~G~GKt~~~~~~a-------~~~~------~~f 213 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIA-------GEAK------VPF 213 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCC-CcEEEECCCCCCHHHHHHHHH-------HHcC------CCE
Confidence 444889999888876655555544321 121 127789998558875 55321 1111 244
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+.+...+ +...+.|. -...+|+.+..+.. . .|.|+||||+|.+
T Consensus 214 ~~is~~~-------------------------~~~~~~g~---~~~~~~~~f~~a~~-----~----~P~IifIDEiD~l 256 (644)
T PRK10733 214 FTISGSD-------------------------FVEMFVGV---GASRVRDMFEQAKK-----A----APCIIFIDEIDAV 256 (644)
T ss_pred EEEehHH-------------------------hHHhhhcc---cHHHHHHHHHHHHh-----c----CCcEEEehhHhhh
Confidence 4421111 11111121 11567766655421 1 3789999999998
Q ss_pred CH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCH
Q psy1686 188 DI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQD 247 (448)
Q Consensus 188 ~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~ 247 (448)
.. ..++.|+..++.... . ++|.+||. +..+.++++. |+ ..+.+...+.
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~------------p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR------------PDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCC------------hhhcCHHHhCCcccceEEEcCCCCH
Confidence 32 134455555554322 1 44444444 7778888884 66 3777888888
Q ss_pred HHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 248 ~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++-.+|++... +.++ -+..|++...+-+.++--+++..|...|...+...|+.++++++...
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~ 391 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 391 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 88888888433 3332 25668888733388888889988888776667778999999998763
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=79.34 Aligned_cols=122 Identities=11% Similarity=0.188 Sum_probs=92.9
Q ss_pred CeEEEEeccCCCC-HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLD-IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 176 ~~VLfIDEVH~L~-~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
+.|++|+++|.+. +...+.|.+.+++++.. ++|+.++. . . ...+..+.-..+ ++|.++.+.+++..++...
T Consensus 47 ~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~-~---~--~~~~~~k~~~~~-~~~~~i~~~~~~~~~~~~~ 119 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPK-L---D--KRKKLTKWLKAL-KNAQIVECKTPKEQELPRW 119 (302)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCC-C---C--HhHHHHHHHHHh-cCeeEEEecCCCHHHHHHH
Confidence 4899999999986 46789999999998776 44444442 0 0 000011111222 5999999999999999988
Q ss_pred HHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++..+ ++++++++|+... +||++.+.|.|+....++. .+.||.++|+.+..
T Consensus 120 i~~~~~~~g~~i~~~a~~~l~~~~-~~d~~~l~~el~KL~~~~~---~~~It~e~I~~~~~ 176 (302)
T TIGR01128 120 IQARLKKLGLRIDPDAVQLLAELV-EGNLLAIAQELEKLALYAP---DGKITLEDVEEAVS 176 (302)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHhhCC---CCCCCHHHHHHHHh
Confidence 87654 9999999999999 9999999999999877752 23699999998876
|
subunit around DNA forming a DNA sliding clamp. |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=86.76 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=87.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-----eEEEEecCceeEeeccccCC-----CCCCChhhhhhcc--cccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-----VVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-----i~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~ 243 (448)
.+.|||||||.|+.+.|..|++.+++.... .-+ .-.+.+|.+|+.++ ......+|..|+- .|.+.
T Consensus 291 ~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~---~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lP 367 (534)
T TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTL---KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLP 367 (534)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceE---eecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCC
Confidence 489999999999999999999999874310 000 01123444444332 1234578888874 56788
Q ss_pred CCC--HHHHHHHHHH---h-c--------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 244 PYQ--DEEIQAILKI---R-L--------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 244 pys--~~eI~~IL~~---R-a--------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
||. .+||..++.. + + +++++++.|.++.--|+.|..-|.+++++..+ .+..|+.+++.
T Consensus 368 pLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 368 PLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 998 4677555442 1 1 89999999999987899999999999997765 24578888864
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=83.82 Aligned_cols=135 Identities=24% Similarity=0.240 Sum_probs=86.4
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE----EEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCC-HH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSPVV----ITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQ-DE 248 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~----IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys-~~ 248 (448)
.+|||+||||..|+...++.|+.++++--..+= .+.-.-.+++|+.++.- --.|-+.||+|+. .+...+-+ .+
T Consensus 144 nRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-eGeLrpqLlDRfg~~v~~~~~~~~~ 222 (423)
T COG1239 144 NRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-EGELRPQLLDRFGLEVDTHYPLDLE 222 (423)
T ss_pred cCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-ccccchhhHhhhcceeeccCCCCHH
Confidence 359999999999999999999999998311000 00001112344444311 2347789999974 55554433 33
Q ss_pred HHHHHHHHhc-----------------------------------CCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHh
Q psy1686 249 EIQAILKIRL-----------------------------------MQTDGLRVLTKIALDT---SLRYAIQLITTASVVC 290 (448)
Q Consensus 249 eI~~IL~~Ra-----------------------------------i~deal~~La~~a~~G---d~R~AL~lLe~a~~~a 290 (448)
+-.+|++++. ++++++.+++..+..+ ..|-.+-+.+.+..+|
T Consensus 223 ~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~a 302 (423)
T COG1239 223 ERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALA 302 (423)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3344444322 7788877777763211 3777777778777666
Q ss_pred hhhCCCcccHHHHHHHHHHh
Q psy1686 291 RRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~~~~~~It~e~V~~~~~lf 310 (448)
.-.|+..++.+|++++..+-
T Consensus 303 a~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 303 ALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred HhcCceeeehhhHHHHHhhh
Confidence 55788899999999998753
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=84.78 Aligned_cols=223 Identities=20% Similarity=0.306 Sum_probs=129.9
Q ss_pred cCCCCCCCCCcccc----ccccccchhhhhhhHHHHHHHhc--------CCCC-CCCcccccCCCCCcch-hhhhhhccC
Q psy1686 26 RGLGLDDSLEPRKV----SQGMVGQLQARRAAGVVLGMIKE--------EVVM-VWPCVMCGRGKNPQKV-KKISTATGR 91 (448)
Q Consensus 26 ~glgL~~~~~p~~~----~~~~VGQ~~~r~a~~~l~~mI~~--------~ki~-gpf~~~~G~ei~GKtt-~~I~~~~gk 91 (448)
.|+||+....|... |+++-|-+.++.+..=+++-++. ||++ | +.+.|||.+|||- ||-.+.-.
T Consensus 285 ~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKG--VLLvGPPGTGKTlLARAvAGEA- 361 (752)
T KOG0734|consen 285 STTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKG--VLLVGPPGTGKTLLARAVAGEA- 361 (752)
T ss_pred cccccccccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCc--eEEeCCCCCchhHHHHHhhccc-
Confidence 46777766666544 89999999999998878877764 5554 6 7788999558875 55332211
Q ss_pred ccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCc
Q psy1686 92 EEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGK 171 (448)
Q Consensus 92 ~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~ 171 (448)
+ .+|..|-..| |-.++-|. +. ..||+-...+.. +
T Consensus 362 ------~------VPFF~~sGSE-------------------------FdEm~VGv-GA--rRVRdLF~aAk~------~ 395 (752)
T KOG0734|consen 362 ------G------VPFFYASGSE-------------------------FDEMFVGV-GA--RRVRDLFAAAKA------R 395 (752)
T ss_pred ------C------CCeEeccccc-------------------------hhhhhhcc-cH--HHHHHHHHHHHh------c
Confidence 1 2344332222 33333333 11 789987776643 2
Q ss_pred ccccCeEEEEeccCCCC-----HHHH---HHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhh-----hhcc
Q psy1686 172 AEIVPGVLFIDEVHMLD-----IECF---SFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLL-----DRMV 238 (448)
Q Consensus 172 ~~i~~~VLfIDEVH~L~-----~~~f---~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lL-----SR~~ 238 (448)
-|+|+||||++... .++. .-||..+-|-... .-|.||++|+||+. |-.+-++|+ +|-.
T Consensus 396 ---APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF----~qNeGiIvigATNf--pe~LD~AL~RPGRFD~~v 466 (752)
T KOG0734|consen 396 ---APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF----KQNEGIIVIGATNF--PEALDKALTRPGRFDRHV 466 (752)
T ss_pred ---CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc----CcCCceEEEeccCC--hhhhhHHhcCCCccceeE
Confidence 38999999999873 2221 1233333222111 23566777777752 112222322 2222
Q ss_pred cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 239 IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+... +..==.+||+.-. .++++ +..||+-. .| +.-+--|++-+|+..|-.++...||..+++.+-..
T Consensus 467 ~Vp~P--Dv~GR~eIL~~yl~ki~~~~~VD~~iiARGT-~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 467 TVPLP--DVRGRTEILKLYLSKIPLDEDVDPKIIARGT-PGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDR 540 (752)
T ss_pred ecCCC--CcccHHHHHHHHHhcCCcccCCCHhHhccCC-CCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhh
Confidence 22222 2111245555322 33333 45666665 44 77777899999998887788889999999988764
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-05 Score=84.32 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=89.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-----CeEEEEecCceeEeecccc-----CC------CCCCChhhhhhc-c
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-----PVVITATNRGVTKIRGTAY-----SS------PHGIPIDLLDRM-V 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-----pi~IlaT~~~i~lI~~Tte-----np------~~~Ip~~lLSR~-~ 238 (448)
.+++||||++.++...+..|+.++|+..- ... ..-+....+|.+++. ++ -+.+|+++|||+ +
T Consensus 301 ~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~-~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL 379 (509)
T smart00350 301 NGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGIT-TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDL 379 (509)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEE-EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceee
Confidence 48999999999999999999999987431 000 000111123333321 11 136999999999 6
Q ss_pred cccCCCCC--------------------------------HHHHHHHHHH-h--c---CCHHHHHHHHHHc-------C-
Q psy1686 239 IIPTQPYQ--------------------------------DEEIQAILKI-R--L---MQTDGLRVLTKIA-------L- 272 (448)
Q Consensus 239 ii~~~pys--------------------------------~~eI~~IL~~-R--a---i~deal~~La~~a-------~- 272 (448)
++.+..+. .+.+++.+.+ | . +++++.++|.++. .
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~ 459 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQ 459 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 66553332 2223222221 1 1 7999999998761 0
Q ss_pred -------CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 -------DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 -------~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.-++|..+.++..|...|.-+++..|+.+||+.+..++
T Consensus 460 ~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 460 SEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred cccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 11789999999999888877888899999999999876
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=79.20 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH------------HHHHHHHHhhhhcCCCeEEEEecCceeEeec
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI------------ECFSFLNRALESEMSPVVITATNRGVTKIRG 220 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~ 220 (448)
..+|...+.+... ...+ .|.|+||||+|.+.. ...+.|+..++.... .+++++|++
T Consensus 272 ~~ir~iF~~Ar~~-a~~g----~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~-------~~~ViVI~A 339 (512)
T TIGR03689 272 RQIRLIFQRAREK-ASDG----RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES-------LDNVIVIGA 339 (512)
T ss_pred HHHHHHHHHHHHH-hhcC----CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc-------CCceEEEec
Confidence 5666655554322 2223 368999999999832 123455555553221 123333433
Q ss_pred cccCCCCCCChhhhh--hcc-cccCCCCCHHHHHHHHHHh
Q psy1686 221 TAYSSPHGIPIDLLD--RMV-IIPTQPYQDEEIQAILKIR 257 (448)
Q Consensus 221 Ttenp~~~Ip~~lLS--R~~-ii~~~pys~~eI~~IL~~R 257 (448)
| |.+..|.++++. |+- .|+|.+++.++.++|++..
T Consensus 340 T--N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 340 S--NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred c--CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHH
Confidence 3 337889999997 764 6999999999999999854
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=93.51 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHH-----HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCC
Q psy1686 154 EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIE-----CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHG 228 (448)
Q Consensus 154 eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~-----~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~ 228 (448)
.||...+.|.. ..|.|+||||||-|+.. ..+.|+..+..... .++++++++|+||. -|-.
T Consensus 1720 rIr~lFelARk---------~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~----~~s~~~VIVIAATN--RPD~ 1784 (2281)
T CHL00206 1720 YITLQFELAKA---------MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE----RCSTRNILVIASTH--IPQK 1784 (2281)
T ss_pred HHHHHHHHHHH---------CCCeEEEEEchhhcCCCccceehHHHHHHHhccccc----cCCCCCEEEEEeCC--Cccc
Confidence 37777766532 14899999999999753 24556665553210 01223344444442 1778
Q ss_pred CChhhhh--hcc-cccCCCCCH---HHHHHHHH-Hhc--CCHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCc
Q psy1686 229 IPIDLLD--RMV-IIPTQPYQD---EEIQAILK-IRL--MQTD--GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATE 297 (448)
Q Consensus 229 Ip~~lLS--R~~-ii~~~pys~---~eI~~IL~-~Ra--i~de--al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~ 297 (448)
+.+||+. |+- .|.+...+. +++..+|. .+. ++++ -++.+|+.+.+-+.++--++...|+..|..++...
T Consensus 1785 LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~ 1864 (2281)
T CHL00206 1785 VDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSI 1864 (2281)
T ss_pred CCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999986 552 445444443 33444442 122 4433 26788988844499999999999998887778889
Q ss_pred ccHHHHHHHHHH
Q psy1686 298 ICMEDIRKVYAL 309 (448)
Q Consensus 298 It~e~V~~~~~l 309 (448)
|+.++++.|+..
T Consensus 1865 Id~~~I~~Al~R 1876 (2281)
T CHL00206 1865 IDTNTIRSALHR 1876 (2281)
T ss_pred cCHHHHHHHHHH
Confidence 999999999863
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-05 Score=86.03 Aligned_cols=129 Identities=20% Similarity=0.208 Sum_probs=95.8
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcC-------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEM-------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-II 240 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii 240 (448)
..+||||||+.+|+...++.|+.++|+-. .+.++++|..+. ..-+.+|.++|+|+. .+
T Consensus 93 h~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~--------~~~~~L~~~lLDRf~l~v 164 (584)
T PRK13406 93 DGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA--------EEDERAPAALADRLAFHL 164 (584)
T ss_pred cCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh--------hcccCCCHHhHhheEEEE
Confidence 35899999999999999999999999742 223333432110 012569999999996 67
Q ss_pred cCCCCCHHHHH-------HHHHHhc------CCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 241 PTQPYQDEEIQ-------AILKIRL------MQTDGLRVLTKIALDT---SLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 241 ~~~pys~~eI~-------~IL~~Ra------i~deal~~La~~a~~G---d~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.+.+.+..+.. +|++.|. ++++.++++++++... +.|-.+.++..|..+|.-+|...|+.+||+
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 77776665542 3443332 9999999988875322 779999999999888876788999999999
Q ss_pred HHHHHhc
Q psy1686 305 KVYALFL 311 (448)
Q Consensus 305 ~~~~lf~ 311 (448)
++..+.+
T Consensus 245 ~Aa~lvL 251 (584)
T PRK13406 245 LAARLVL 251 (584)
T ss_pred HHHHHHH
Confidence 9998643
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.5e-05 Score=75.34 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=86.8
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCe--------EEEEecCceeEeeccccC---CCCCCChhhhhhcccccCCCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPV--------VITATNRGVTKIRGTAYS---SPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi--------~IlaT~~~i~lI~~Tten---p~~~Ip~~lLSR~~ii~~~py 245 (448)
++++|||+++++.+.++.|+.++|+....+ ++ .-.....+|.+++.. --+..|.+|++||..+.+...
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i-~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P 185 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYV-DVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYP 185 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceE-ecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCC
Confidence 789999999999999999999998742100 00 000111222222111 113458999999999999888
Q ss_pred CHHHHHHHHHHhc-CCHHHHHHHHHHc-----C----CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL-MQTDGLRVLTKIA-----L----DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 246 s~~eI~~IL~~Ra-i~deal~~La~~a-----~----~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+.++..+|++.+. ++++..+.+.++. . .-+.|-++.+...+... .....++.++++++..
T Consensus 186 ~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 186 DIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIPVDVDDEDFVDLCI 255 (262)
T ss_pred CHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCCCCCCcHHHHHHHH
Confidence 9999999999766 8888877777773 1 11577777777766443 2355688888887764
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >KOG2227|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.1e-06 Score=86.32 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=98.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC----eEEEEecCceeEeeccccCCCCCCChhhhhhc----ccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM----VIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~----~ii~~~pys~ 247 (448)
+-|+++||.++|....+..|+-..|=+-.| ++|.--|. +.-|+ . | + +.|-.|+ .++.|+||+.
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs----lDlTd-R--~-L-prL~~~~~~~P~~l~F~PYTk 327 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS----LDLTD-R--F-L-PRLNLDLTIKPKLLVFPPYTK 327 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh----hhHHH-H--H-h-hhhhhccCCCCceeeecCCCH
Confidence 478899999999988888888888866666 22211111 11111 1 0 1 2233322 3789999999
Q ss_pred HHHHHHHHHhc-------CCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhhhhCC----------------CcccHHH
Q psy1686 248 EEIQAILKIRL-------MQTDGLRVLTKI--ALDTSLRYAIQLITTASVVCRRRKA----------------TEICMED 302 (448)
Q Consensus 248 ~eI~~IL~~Ra-------i~deal~~La~~--a~~Gd~R~AL~lLe~a~~~a~~~~~----------------~~It~e~ 302 (448)
++|.+||+.|. +-+.|++++|+- |..||+|.||.....|..+++.+++ +.|..++
T Consensus 328 ~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~ 407 (529)
T KOG2227|consen 328 DQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEH 407 (529)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHH
Confidence 99999999877 555689998886 5689999999999999988865322 3466788
Q ss_pred HHHHHHHhcc--hhHHHHHHHHHHhhhhh
Q psy1686 303 IRKVYALFLD--EGRSTQYLREHQNEYMF 329 (448)
Q Consensus 303 V~~~~~lf~D--~~~s~~~L~~~~~~~l~ 329 (448)
|-.+++-++. ..++...|..+++..+-
T Consensus 408 va~viSk~~~s~~~~s~~slplqqkiilc 436 (529)
T KOG2227|consen 408 VAAVISKVDGSPSARSRESLPLQQKIILC 436 (529)
T ss_pred HHHHhhhhccChhhhhhhhcCcccchhHH
Confidence 8888876542 24555555555555443
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=87.20 Aligned_cols=211 Identities=20% Similarity=0.311 Sum_probs=126.6
Q ss_pred ccccCccCCCCCCCCC---------ccccccccccchhhhhhhHHHHHHHhcCCCC--C---C--CcccccCCCCCcch-
Q psy1686 20 GAHSHIRGLGLDDSLE---------PRKVSQGMVGQLQARRAAGVVLGMIKEEVVM--V---W--PCVMCGRGKNPQKV- 82 (448)
Q Consensus 20 ~~hsHi~glgL~~~~~---------p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~--g---p--f~~~~G~ei~GKtt- 82 (448)
.+.|+..|.|+..-+. +...-+-+|||++|..+ +.++|+..|.. . | -..|.||=..|||-
T Consensus 461 ~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~a---vs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 461 EVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEA---VSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred HHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHH---HHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 3567788999863221 22235679999999876 67777766542 0 2 12345653138863
Q ss_pred hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHH
Q psy1686 83 KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAK 162 (448)
Q Consensus 83 ~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~ 162 (448)
|+..+..- .|....++.+-=.| ++-=|-+.=+--.|.|+=.. +.-|..|..||.
T Consensus 538 AkaLA~~L----------fg~e~aliR~DMSE---------y~EkHsVSrLIGaPPGYVGy--eeGG~LTEaVRr----- 591 (786)
T COG0542 538 AKALAEAL----------FGDEQALIRIDMSE---------YMEKHSVSRLIGAPPGYVGY--EEGGQLTEAVRR----- 591 (786)
T ss_pred HHHHHHHh----------cCCCccceeechHH---------HHHHHHHHHHhCCCCCCcee--ccccchhHhhhc-----
Confidence 44222110 11111122211111 11112222222233343111 223556655552
Q ss_pred HHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCC------------CeEEEEecCceeEeecccc-------
Q psy1686 163 VTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMS------------PVVITATNRGVTKIRGTAY------- 223 (448)
Q Consensus 163 v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------------pi~IlaT~~~i~lI~~Tte------- 223 (448)
+ .+.|+.+|||.--+++.||.|+..+++--+ -++||.||-|.-.+.....
T Consensus 592 --------~---PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~ 660 (786)
T COG0542 592 --------K---PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADK 660 (786)
T ss_pred --------C---CCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchh
Confidence 2 247999999999999999999999998752 2778888877643332110
Q ss_pred -----------CCCCCCChhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC
Q psy1686 224 -----------SSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL 272 (448)
Q Consensus 224 -----------np~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~ 272 (448)
+.. .+|+||.|.- ||.|.|++.+++.+|++... +++++.++|++.+.
T Consensus 661 ~~~~~~v~~~l~~~--F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 661 EALKEAVMEELKKH--FRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred hhHHHHHHHHHHhh--CCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 112 4799999998 99999999999999887522 88999999988874
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=83.81 Aligned_cols=134 Identities=23% Similarity=0.309 Sum_probs=88.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE----EEEecCceeEeeccccCCC---CCCChhhhhhccc-ccCCCC-C
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV----ITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVI-IPTQPY-Q 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~----IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~i-i~~~py-s 246 (448)
.++||||||++|+..+|+.|+.++++..-.+- ...-.....+|. | .||. -.+|++|++|+.+ +.+... +
T Consensus 85 ~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t-~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 85 RGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-T-YDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred CCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-e-cCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 47999999999999999999999986430000 000001123332 2 2222 2589999999964 233222 2
Q ss_pred HHHHHHHH-----------------------HHhc------CCHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHhhhhC
Q psy1686 247 DEEIQAIL-----------------------KIRL------MQTDGLRVLTKIAL--D-TSLRYAIQLITTASVVCRRRK 294 (448)
Q Consensus 247 ~~eI~~IL-----------------------~~Ra------i~deal~~La~~a~--~-Gd~R~AL~lLe~a~~~a~~~~ 294 (448)
.++=.+|+ ..|. ++++.+++|+.++. + .+.|-.+.++..|...|.-++
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g 242 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG 242 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC
Confidence 22212222 1111 89999999988842 2 258999999999988776678
Q ss_pred CCcccHHHHHHHHHHhc
Q psy1686 295 ATEICMEDIRKVYALFL 311 (448)
Q Consensus 295 ~~~It~e~V~~~~~lf~ 311 (448)
+..|+.+||+.+..+.+
T Consensus 243 r~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 243 RTEVTEEDLKLAVELVL 259 (589)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 89999999999998654
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=82.27 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=63.6
Q ss_pred CeEEEEeccCCCC-----------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hc-cccc
Q psy1686 176 PGVLFIDEVHMLD-----------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~ 241 (448)
|.|+||||+|.+. ...++.|+..++.... .+.+++|++| |++..++++++. |+ ..+.
T Consensus 272 p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~-------~~~vivI~at--n~~~~ld~al~r~gRfd~~i~ 342 (733)
T TIGR01243 272 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG-------RGRVIVIGAT--NRPDALDPALRRPGRFDREIV 342 (733)
T ss_pred CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc-------CCCEEEEeec--CChhhcCHHHhCchhccEEEE
Confidence 6899999999884 2356677777764321 1223333333 236678888876 55 3678
Q ss_pred CCCCCHHHHHHHHHHhc----C-CHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q psy1686 242 TQPYQDEEIQAILKIRL----M-QTDGLRVLTKIALDT-SLRYAIQLITTA 286 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra----i-~deal~~La~~a~~G-d~R~AL~lLe~a 286 (448)
+.+.+.++-.+||+... + ++..++.+++.+ .| ...+--.+...|
T Consensus 343 i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t-~G~~gadl~~l~~~a 392 (733)
T TIGR01243 343 IRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVT-HGFVGADLAALAKEA 392 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 88889999899988433 3 344577888887 55 444333333333
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8e-05 Score=82.34 Aligned_cols=194 Identities=23% Similarity=0.291 Sum_probs=110.9
Q ss_pred hcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccc
Q psy1686 61 KEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTH 138 (448)
Q Consensus 61 ~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~ 138 (448)
..+++.||-+-+.|||..|||+ |+ |.+++| .+||.+-=|=+. |.|-=|.|
T Consensus 344 l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--------------RkfvR~sLGGvr--------------DEAEIRGH 395 (782)
T COG0466 344 LTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--------------RKFVRISLGGVR--------------DEAEIRGH 395 (782)
T ss_pred HhccCCCcEEEEECCCCCCchhHHHHHHHHhC--------------CCEEEEecCccc--------------cHHHhccc
Confidence 3577888999999999448876 55 666666 366664333222 11111111
Q ss_pred cchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----HHHHHHHHhhhhcC-----------
Q psy1686 139 GFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----ECFSFLNRALESEM----------- 203 (448)
Q Consensus 139 g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----~~f~~Llk~lEe~~----------- 203 (448)
= ... .|...-.|=+.+.+ -|. .-.|+.||||+-++. +-.++|+..+.-..
T Consensus 396 R--RTY---IGamPGrIiQ~mkk-------a~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 396 R--RTY---IGAMPGKIIQGMKK-------AGV---KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred c--ccc---cccCChHHHHHHHH-------hCC---cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC
Confidence 0 000 01111223222322 232 458999999999865 33566666654221
Q ss_pred ----CCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------------CCHHH
Q psy1686 204 ----SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------------MQTDG 263 (448)
Q Consensus 204 ----~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------------i~dea 263 (448)
+.++.+|| -|+...||.+||+|+-||++..|+.+|=.+|-++.. ++|+|
T Consensus 461 ~yDLS~VmFiaT-----------ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~a 529 (782)
T COG0466 461 PYDLSKVMFIAT-----------ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEA 529 (782)
T ss_pred ccchhheEEEee-----------cCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHH
Confidence 12333333 355667999999999999999999998777766311 99999
Q ss_pred HHHHHHH-cCCC---CHHHHHHHHHHHHHH--hhh-hCCC-cccHHHHHHHHH
Q psy1686 264 LRVLTKI-ALDT---SLRYAIQLITTASVV--CRR-RKAT-EICMEDIRKVYA 308 (448)
Q Consensus 264 l~~La~~-a~~G---d~R~AL~lLe~a~~~--a~~-~~~~-~It~e~V~~~~~ 308 (448)
+..|.+. +-+. ++.+-|.-+-+-+.. ... .... .|+..++++.++
T Consensus 530 i~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 530 IKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 9888776 2122 444444433332111 111 1222 588888888775
|
|
| >KOG1969|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=80.52 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcC-----------------------CCeEEE
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEM-----------------------SPVVIT 209 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------------------~pi~Il 209 (448)
..+++.|..++....--+ |--.|.-|+||||+==.+.+.+.|++.++..- -|++..
T Consensus 366 ~~v~~kI~~avq~~s~l~-adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICI 444 (877)
T KOG1969|consen 366 PMVKEKIENAVQNHSVLD-ADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICI 444 (877)
T ss_pred HHHHHHHHHHHhhccccc-cCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEE
Confidence 578888888876643221 11368999999999998899999999888211 133333
Q ss_pred EecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHH
Q psy1686 210 ATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLI 283 (448)
Q Consensus 210 aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lL 283 (448)
|-+- +-|.. .+|.-=|.++.|.|-+..-+.+.|+.-| ++..+|..|++++ ++|+|.+||.|
T Consensus 445 CNdL---------YaPaL---R~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~-~~DIRsCINtL 511 (877)
T KOG1969|consen 445 CNDL---------YAPAL---RPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELT-QNDIRSCINTL 511 (877)
T ss_pred ecCc---------cchhh---hhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-cchHHHHHHHH
Confidence 3221 12221 3555567899999999998888888766 9999999999999 99999999999
Q ss_pred HHHHHHhhhhCCCcccHHHHHHH
Q psy1686 284 TTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 284 e~a~~~a~~~~~~~It~e~V~~~ 306 (448)
...+...+.. ...|...++-..
T Consensus 512 QfLa~~~~r~-ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 512 QFLASNVDRR-DSSISVKLICAK 533 (877)
T ss_pred HHHHHhcccc-cccchhhhhhhh
Confidence 9876554321 223555555443
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=74.13 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=85.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~pys 246 (448)
.+.||||||+.|+.+.|..|++.+|+.....+= -.....+-+|.+|+.++ ......+|+.|+ ..|.+.|+.
T Consensus 94 gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLR 173 (329)
T TIGR02974 94 GGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLR 173 (329)
T ss_pred CCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchh
Confidence 489999999999999999999999875310000 00011234455554332 123457899998 589999999
Q ss_pred --HHHHHHHHHH---h----------c-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHH
Q psy1686 247 --DEEIQAILKI---R----------L-MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMED 302 (448)
Q Consensus 247 --~~eI~~IL~~---R----------a-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~ 302 (448)
.+||..++.. + . ++++|++.|..+.--|+.|..-|.+++++..+. +..++.++
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~---~~~~~~~~ 242 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHG---LEEAPIDE 242 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC---CCccchhh
Confidence 4677555432 0 1 799999999999888999999999999977652 22455544
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.7e-05 Score=84.88 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=85.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe----cCceeEeeccccCC-----CCCCChhhhhhc--ccccCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT----NRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT----~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~p 244 (448)
.+.||||||+.|..+.|..|++.+|+....-+ .. .-.+-+|.+|+.++ ......+|..|. ..|.+.|
T Consensus 417 ~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPp 494 (638)
T PRK11388 417 GGTLFLEKVEYLSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 (638)
T ss_pred CCEEEEcChhhCCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCC
Confidence 48999999999999999999999987531000 00 00122333333331 122345666664 3677888
Q ss_pred CCHH--HHHHHHHH-------hc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 245 YQDE--EIQAILKI-------RL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 245 ys~~--eI~~IL~~-------Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|-+. ||..+++. +. +++++++.|.++.=-|+.|..-|+++.+...+ .+..|+.+++...+
T Consensus 495 LreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 495 LRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 8764 66544442 10 89999999999988899999999999987654 23468888775433
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=80.09 Aligned_cols=207 Identities=22% Similarity=0.234 Sum_probs=134.1
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC-------------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCc
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE-------------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWL 101 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~-------------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~ 101 (448)
|+-.++++=||+.+++.. .++|.-. ...| +.++|||.-|||+ ||-. |++-+
T Consensus 429 p~v~W~dIGGlE~lK~el---q~~V~~p~~~pe~F~r~Gi~ppkG--VLlyGPPGC~KT~lAkal-------Ane~~--- 493 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKREL---QQAVEWPLKHPEKFARFGISPPKG--VLLYGPPGCGKTLLAKAL-------ANEAG--- 493 (693)
T ss_pred CCCChhhccCHHHHHHHH---HHHHhhhhhchHHHHHhcCCCCce--EEEECCCCcchHHHHHHH-------hhhhc---
Confidence 666688888899998774 4444321 1124 6789998336765 5522 22222
Q ss_pred cCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 102 ADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 102 ~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
..|...+.-|++. .+-|. +| ..||+..+++.. ..|.|+|+
T Consensus 494 ---~nFlsvkgpEL~s-------------------------k~vGe-SE--r~ir~iF~kAR~---------~aP~IiFf 533 (693)
T KOG0730|consen 494 ---MNFLSVKGPELFS-------------------------KYVGE-SE--RAIREVFRKARQ---------VAPCIIFF 533 (693)
T ss_pred ---CCeeeccCHHHHH-------------------------HhcCc-hH--HHHHHHHHHHhh---------cCCeEEeh
Confidence 3666654444432 12333 11 678887776632 24799999
Q ss_pred eccCCCCHH-----------HHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCC
Q psy1686 182 DEVHMLDIE-----------CFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQP 244 (448)
Q Consensus 182 DEVH~L~~~-----------~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~p 244 (448)
||++-+..+ ..+-|++-+.-... . .+|-|||+ |-.|-++||+ |+= ++++.+
T Consensus 534 DEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR------------pd~ID~ALlRPGRlD~iiyVpl 601 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNR------------PDMIDPALLRPGRLDRIIYVPL 601 (693)
T ss_pred hhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCC------------hhhcCHHHcCCcccceeEeecC
Confidence 999999442 25556655554322 2 45566666 7779999998 774 677766
Q ss_pred CCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh--CCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRR--KATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~--~~~~It~e~V~~~~~l 309 (448)
-+.+-=.+||+..+ ++++ -++.|++....-|.++--++-..|+.+|.++ ....|+.+|.++++..
T Consensus 602 PD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~ 673 (693)
T KOG0730|consen 602 PDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKA 673 (693)
T ss_pred ccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHh
Confidence 66666678888655 7777 4788999873338888888888888877543 3457888888888863
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.8e-05 Score=64.67 Aligned_cols=51 Identities=39% Similarity=0.503 Sum_probs=40.8
Q ss_pred CeEEEEeccCCCCHHH-----------HHHHHHhhhhcCCC----eEEEEecCceeEeeccccCCCCCCChhhh-hhcc
Q psy1686 176 PGVLFIDEVHMLDIEC-----------FSFLNRALESEMSP----VVITATNRGVTKIRGTAYSSPHGIPIDLL-DRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~-----------f~~Llk~lEe~~~p----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lL-SR~~ 238 (448)
+.|+||||+|.+.... .+.|++.++..... ++|++||. +..++++++ +||.
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~------------~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS------------PDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS------------GGGSCHHHHSTTSE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC------------hhhCCHhHHhCCCc
Confidence 6999999999997766 88999999987763 44444444 677999999 9985
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=77.94 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=92.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC------eEEEEecCceeEeeccccCC---------------------CCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP------VVITATNRGVTKIRGTAYSS---------------------PHG 228 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p------i~IlaT~~~i~lI~~Ttenp---------------------~~~ 228 (448)
.++|||||+|.|++.+++.|+..+|+.... ...+ ...+.+|.+++.-| ...
T Consensus 296 ~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~--pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~ 373 (499)
T TIGR00368 296 NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY--PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNK 373 (499)
T ss_pred CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec--cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhh
Confidence 489999999999999999999999975310 0000 11234455544321 125
Q ss_pred CChhhhhhcc-cccCCCCCHHHH------------HHHH-------HHh---------------------c-CCHHHHHH
Q psy1686 229 IPIDLLDRMV-IIPTQPYQDEEI------------QAIL-------KIR---------------------L-MQTDGLRV 266 (448)
Q Consensus 229 Ip~~lLSR~~-ii~~~pys~~eI------------~~IL-------~~R---------------------a-i~deal~~ 266 (448)
++.+||||+- .+.+.+++.+++ ++.+ ..| | +++++.++
T Consensus 374 is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~ 453 (499)
T TIGR00368 374 LSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDAND 453 (499)
T ss_pred ccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHH
Confidence 8999999995 778888776654 2211 111 1 46777777
Q ss_pred HHHHcCCC--CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 267 LTKIALDT--SLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 267 La~~a~~G--d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+.+....+ ++|--..+|..|..+|.-++...|+.+||.++++
T Consensus 454 l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 454 LEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 77664232 9999999999999888878889999999999885
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00025 Score=75.87 Aligned_cols=146 Identities=27% Similarity=0.328 Sum_probs=105.2
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC-----------HHHHHHHHHhhh--hcCCCeE-E
Q psy1686 143 LFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD-----------IECFSFLNRALE--SEMSPVV-I 208 (448)
Q Consensus 143 ~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~-----------~~~f~~Llk~lE--e~~~pi~-I 208 (448)
+++.-.+|.-+.||+....+.. ..|.|+||||++.+- ...++-|+..+. +...+++ |
T Consensus 312 l~sk~vGesek~ir~~F~~A~~---------~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARK---------LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred HhccccchHHHHHHHHHHHHHc---------CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 3444456677888887776631 247999999999981 246666777764 3334443 4
Q ss_pred EEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCCHHHHHHHHHHhc----C---CHHHHHHHHHHcCCCCHHH
Q psy1686 209 TATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQDEEIQAILKIRL----M---QTDGLRVLTKIALDTSLRY 278 (448)
Q Consensus 209 laT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys~~eI~~IL~~Ra----i---~deal~~La~~a~~Gd~R~ 278 (448)
.|||. |..++++++. |+- +|.+.+.+.++-.+|++... . ++--++.|++...+-+..+
T Consensus 383 ~aTN~------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgad 450 (494)
T COG0464 383 AATNR------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGAD 450 (494)
T ss_pred ecCCC------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHH
Confidence 55554 7889999988 885 89999999999989988543 1 3455788888773448888
Q ss_pred HHHHHHHHHHHhhhhC-CCcccHHHHHHHHHH
Q psy1686 279 AIQLITTASVVCRRRK-ATEICMEDIRKVYAL 309 (448)
Q Consensus 279 AL~lLe~a~~~a~~~~-~~~It~e~V~~~~~l 309 (448)
.-.++..|...+..+. ...|+.+|...++..
T Consensus 451 i~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 451 IAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 8888888888776555 567999999988865
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00059 Score=73.99 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=84.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-Ce----EEEEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PV----VITATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi----~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~ 243 (448)
.+.||||||+.|+...|..|++.+++... +. -+ ...+-+|.+|+.++ ......+|..|. ..+.+.
T Consensus 299 ~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~---~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lP 375 (520)
T PRK10820 299 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV---HVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLP 375 (520)
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcce---eeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCC
Confidence 48899999999999999999999987421 10 00 01122333333332 112346788884 588899
Q ss_pred CCCH--HHHHHHHH----Hhc---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 244 PYQD--EEIQAILK----IRL---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 244 pys~--~eI~~IL~----~Ra---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
|+.+ +||..+.. .-+ ++++++.+|..+.--|+.|..-|.+++|...+. +..|+.+++
T Consensus 376 pLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~---~~~i~~~~~ 447 (520)
T PRK10820 376 PLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE---GYELRPQDI 447 (520)
T ss_pred CcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 9987 35644322 111 899999999999879999999999999977652 346887775
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0005 Score=74.83 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=85.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---cCceeEeeccccCCCC-----CCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---NRGVTKIRGTAYSSPH-----GIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---~~~i~lI~~Ttenp~~-----~Ip~~lLSR~--~ii~~~py 245 (448)
.|.||||||+.|+.+.|..|++.+|+.....+ ..+ .-.+-+|.+|+.++.. ....+|..|. ..+.+.||
T Consensus 308 gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~-g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPL 386 (526)
T TIGR02329 308 RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRV-GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPL 386 (526)
T ss_pred CceEEecChHhCCHHHHHHHHHHHhcCcEEec-CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCc
Confidence 48899999999999999999999997531100 000 0011233333333211 2334666675 57888999
Q ss_pred CH--HHHHHHHHH---hc-------CCHHHHHH-------HHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 246 QD--EEIQAILKI---RL-------MQTDGLRV-------LTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 246 s~--~eI~~IL~~---Ra-------i~deal~~-------La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
.+ +||..+... +. ++++++.. |..+.=-|+.|.--|.+++++..+....+..|+.+++...
T Consensus 387 ReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 387 RERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred hhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 86 466554432 11 88899888 8888888999999999999987642112346888876543
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00069 Score=68.93 Aligned_cols=67 Identities=30% Similarity=0.382 Sum_probs=46.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhc----------C--CCeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESE----------M--SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQ 243 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~----------~--~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~ 243 (448)
+|+|+|||.+-+++.+++|+.+++|. . .|.+++||... -.....+.+|.++++|| +.+.+.
T Consensus 114 ~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np------~e~~g~~~l~eA~ldRf~~~~~v~ 187 (329)
T COG0714 114 VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP------GEYEGTYPLPEALLDRFLLRIYVD 187 (329)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc------cccCCCcCCCHHHHhhEEEEEecC
Confidence 39999999999999999999999992 1 23555555220 01234677899999999 455555
Q ss_pred CCCHHH
Q psy1686 244 PYQDEE 249 (448)
Q Consensus 244 pys~~e 249 (448)
....++
T Consensus 188 yp~~~~ 193 (329)
T COG0714 188 YPDSEE 193 (329)
T ss_pred CCCchH
Confidence 552443
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00045 Score=77.73 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=100.5
Q ss_pred ccchhhhhhhccccccchhhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC-------C--HHHH
Q psy1686 124 TVTLHEIDVINSRTHGFLALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML-------D--IECF 192 (448)
Q Consensus 124 ~vtLheiD~~nsr~~g~~a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L-------~--~~~f 192 (448)
..++..+|+.+ +.+|. +||--+.++..+++.. +.+ +.||||||+|.+ + .++-
T Consensus 226 ~~~i~sLD~g~--------LvAGakyRGeFEeRlk~vl~ev~----~~~-----~vILFIDEiHtiVGAG~~~G~a~DAa 288 (786)
T COG0542 226 DKRIYSLDLGS--------LVAGAKYRGEFEERLKAVLKEVE----KSK-----NVILFIDEIHTIVGAGATEGGAMDAA 288 (786)
T ss_pred CCEEEEecHHH--------HhccccccCcHHHHHHHHHHHHh----cCC-----CeEEEEechhhhcCCCcccccccchh
Confidence 44555666654 33443 4454455555554432 122 489999999999 1 5688
Q ss_pred HHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------C
Q psy1686 193 SFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------M 259 (448)
Q Consensus 193 ~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------i 259 (448)
|.|.+++- .+.+-.|||||. +-++.--++|--|++-+....-+.++-..||+--. |
T Consensus 289 NiLKPaLA-----------RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i 357 (786)
T COG0542 289 NLLKPALA-----------RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRI 357 (786)
T ss_pred hhhHHHHh-----------cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCcee
Confidence 99999988 588899999983 45777788999999999999999999999987322 9
Q ss_pred CHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIAL-----DTSLRYAIQLITTASVV 289 (448)
Q Consensus 260 ~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~ 289 (448)
+|+|+..-+.+|. +-=+..|+.+++.|+..
T Consensus 358 ~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 358 TDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGAR 392 (786)
T ss_pred cHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Confidence 9999999888862 22345799999998754
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=70.02 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=71.5
Q ss_pred cCeEEEEeccCCC---CH-HHHHHHHHhhhhcCC-CeEEEEecCce----eEeeccccCCCCCCChhhhhhc--ccccCC
Q psy1686 175 VPGVLFIDEVHML---DI-ECFSFLNRALESEMS-PVVITATNRGV----TKIRGTAYSSPHGIPIDLLDRM--VIIPTQ 243 (448)
Q Consensus 175 ~~~VLfIDEVH~L---~~-~~f~~Llk~lEe~~~-pi~IlaT~~~i----~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~ 243 (448)
.+.|+.|+|.=.. +. .-.++|.+.+..... |+||..|+-.. --.+.+......-+|++++..+ ..|.|.
T Consensus 132 ~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred CceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 3589999997543 22 224455555555555 86665553210 0000000111124688888864 589999
Q ss_pred CCCHHHHHHHHHHhc------------CC--HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKIRL------------MQ--TDGLRVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 244 pys~~eI~~IL~~Ra------------i~--deal~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
|.+..-|++.|+.-+ .. .+.++.|++.+ +||+|-||+.|+..+.
T Consensus 212 pIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s-~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS-NGDIRSAINNLQFWCL 269 (519)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc-CchHHHHHHHHHHHhc
Confidence 999988877776322 22 34588999998 9999999999998765
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00017 Score=75.19 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=83.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCCCC-----CCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSSPH-----GIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp~~-----~Ip~~lLSR~--~ii~~~pys 246 (448)
.|.|||||||.|+...|..|++.+++.....+= -...-.+-+|.+|+.++.. ....+|..|+ ..+.+.|+-
T Consensus 234 ~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLr 313 (441)
T PRK10365 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLR 313 (441)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChh
Confidence 489999999999999999999999974311000 0001123355555555332 2344555554 355666766
Q ss_pred HH--HHHHHHHH---h----c------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 247 DE--EIQAILKI---R----L------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 247 ~~--eI~~IL~~---R----a------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
.. ||..+... + . ++++++..|..+.--|++|...|.+++++..+ .+..|+.+++..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 43 55433321 1 0 89999999999987899999999999987654 234688777753
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00058 Score=75.51 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=90.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE---------EEEe---cCceeEeeccccCCCCCCChhhhhhcc----c
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV---------ITAT---NRGVTKIRGTAYSSPHGIPIDLLDRMV----I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~---------IlaT---~~~i~lI~~Ttenp~~~Ip~~lLSR~~----i 239 (448)
.|+|||||++.|+..+|+.|++++++....+. .+.+ .-.+.+|.+++......+.++|++|+- .
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~ 297 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYE 297 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEE
Confidence 49999999999999999999999986431110 0000 012234444443323568899999986 1
Q ss_pred ccCC---CCCHHHHHHHHH---Hhc--------CCHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHhhhhCCC
Q psy1686 240 IPTQ---PYQDEEIQAILK---IRL--------MQTDGLRVLTKIAL---------DTSLRYAIQLITTASVVCRRRKAT 296 (448)
Q Consensus 240 i~~~---pys~~eI~~IL~---~Ra--------i~deal~~La~~a~---------~Gd~R~AL~lLe~a~~~a~~~~~~ 296 (448)
+.|. |-+.+...++.+ ..+ ++++|++.|.+.+. ..+.|.--+++..|...|..+++.
T Consensus 298 v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~ 377 (608)
T TIGR00764 298 VYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKV 377 (608)
T ss_pred EEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 2333 334544433332 222 89999999886532 135799999999997777666778
Q ss_pred cccHHHHHHHHHHh
Q psy1686 297 EICMEDIRKVYALF 310 (448)
Q Consensus 297 ~It~e~V~~~~~lf 310 (448)
.|+.+||+++.+..
T Consensus 378 ~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 378 YVTAEHVLKAKKLA 391 (608)
T ss_pred eecHHHHHHHHHHH
Confidence 89999999998753
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=75.19 Aligned_cols=208 Identities=19% Similarity=0.201 Sum_probs=127.7
Q ss_pred cccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCccccCCCc
Q psy1686 37 RKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDLRCPDGE 114 (448)
Q Consensus 37 ~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge 114 (448)
...++++||.....+. +++-|+.=--.|-.+.+.|...+||+. |+ |-..+. +-. ..+|+...|+.
T Consensus 74 ~~~~~~LIG~~~~~~~---~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~----r~~------~~PFI~~NCa~ 140 (403)
T COG1221 74 SEALDDLIGESPSLQE---LREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSA----RRA------EAPFIAFNCAA 140 (403)
T ss_pred chhhhhhhccCHHHHH---HHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhh----ccc------CCCEEEEEHHH
Confidence 3447999999877544 567666622234567788865347753 33 332221 111 24788877776
Q ss_pred ccceeeeeeccchhhhhhhccccccchhhhcCCCCCCch--HHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHH
Q psy1686 115 LQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITP--EVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECF 192 (448)
Q Consensus 115 ~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~--eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f 192 (448)
.. .+++. +.+|.-.+|.-|- .=|. -+.+ .+ ..|.||+||||+|..+.|
T Consensus 141 ~~------------------en~~~-~eLFG~~kGaftGa~~~k~-------Glfe--~A--~GGtLfLDEI~~LP~~~Q 190 (403)
T COG1221 141 YS------------------ENLQE-AELFGHEKGAFTGAQGGKA-------GLFE--QA--NGGTLFLDEIHRLPPEGQ 190 (403)
T ss_pred hC------------------cCHHH-HHHhccccceeecccCCcC-------chhe--ec--CCCEEehhhhhhCCHhHH
Confidence 43 22221 1111111111110 0000 0110 11 248999999999999999
Q ss_pred HHHHHhhhhcCC-----CeEEEEecCceeEeeccccCCCCCCCh--hhhhhcc--cccCCCCCHH--HHHHHHHH----h
Q psy1686 193 SFLNRALESEMS-----PVVITATNRGVTKIRGTAYSSPHGIPI--DLLDRMV--IIPTQPYQDE--EIQAILKI----R 257 (448)
Q Consensus 193 ~~Llk~lEe~~~-----pi~IlaT~~~i~lI~~Ttenp~~~Ip~--~lLSR~~--ii~~~pys~~--eI~~IL~~----R 257 (448)
..|++.+|+-.. +..+ .-.+-+|.||++++.-.+-. +|..|+. .|++.|+.+. ||...++. -
T Consensus 191 ~kLl~~le~g~~~rvG~~~~~---~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~ 267 (403)
T COG1221 191 EKLLRVLEEGEYRRVGGSQPR---PVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSE 267 (403)
T ss_pred HHHHHHHHcCceEecCCCCCc---CCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHH
Confidence 999999998432 1111 12345788888888877877 8999774 7888999875 33222221 1
Q ss_pred c---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 258 L---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 258 a---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
| .+++++..|-.+.--|+.|.--|.++.++..+
T Consensus 268 ~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 268 ARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 1 55689999999888999999999999997665
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0012 Score=71.62 Aligned_cols=132 Identities=17% Similarity=0.251 Sum_probs=88.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC------eEEEEecCceeEeeccccCC------------C-------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP------VVITATNRGVTKIRGTAYSS------------P-------HGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p------i~IlaT~~~i~lI~~Ttenp------------~-------~~Ip 230 (448)
.++|||||++.++...++.|...+|+..-. .+. -.-.+.+|.+++..| + .+++
T Consensus 295 gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~--~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls 372 (506)
T PRK09862 295 NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT--YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLS 372 (506)
T ss_pred CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee--ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCC
Confidence 489999999999999999999999875410 000 011123333333222 0 3588
Q ss_pred hhhhhhcc-cccCCCCCHH-------------HHH-HHHH------Hh----------------c-CCHHHHHHHHHHc-
Q psy1686 231 IDLLDRMV-IIPTQPYQDE-------------EIQ-AILK------IR----------------L-MQTDGLRVLTKIA- 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~-------------eI~-~IL~------~R----------------a-i~deal~~La~~a- 271 (448)
.++|||+- .+.+.+.+.+ +++ .+++ .| | +++++..++....
T Consensus 373 ~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~ 452 (506)
T PRK09862 373 GPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLI 452 (506)
T ss_pred HhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999996 4666655322 232 1111 11 0 6777776665442
Q ss_pred -CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 272 -LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 272 -~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+-+.|-...+|..|..+|.-+++..|+.+||.++++.
T Consensus 453 ~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 453 HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 14489999999999998888788899999999999985
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=66.04 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=78.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~pys 246 (448)
.|.||||||+.|....|..|++.+++......= -.....+-+|.+|+.++ ......+|+.|+ ..|.+.|+.
T Consensus 101 gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLR 180 (326)
T PRK11608 101 GGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLR 180 (326)
T ss_pred CCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChh
Confidence 488999999999999999999999874310000 00000122333333221 123568888887 378899998
Q ss_pred H--HHHHHHHHH-------h------c-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 247 D--EEIQAILKI-------R------L-MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 247 ~--~eI~~IL~~-------R------a-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
. +||..++.. + . ++++++..|..+.=-|+.|.--|.+++++..+
T Consensus 181 eR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 181 ERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 6 466555432 1 1 79999999999988899999999999987654
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=65.60 Aligned_cols=123 Identities=8% Similarity=0.106 Sum_probs=89.0
Q ss_pred CeEEEEeccCCC---CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCC---CCHH
Q psy1686 176 PGVLFIDEVHML---DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQP---YQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L---~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~p---ys~~ 248 (448)
+.+++|++.+.+ +++..+.|.+.++.++.. ++|+.+.+.. + .-.+.+..+...+.+..|.+ ++.+
T Consensus 62 ~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~------d--~r~k~~k~l~k~~~~~~~~~~~~~~~~ 133 (326)
T PRK07452 62 GRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKP------D--GRLKSTKLLQKLAEEKEFSLIPPWDTE 133 (326)
T ss_pred ceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCc------c--hHHHHHHHHHHceeEEEecCCCcccHH
Confidence 478999998776 567788999999987655 5555433311 0 01123455555566666554 4667
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 249 eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++...++.++ |+++|+++|+... ++|++.+.|-|+....++. .++..||.++|+.+..
T Consensus 134 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~~-~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 134 GLKQLVERTAQELGVKLTPEAAELLAEAV-GNDSRRLYNELEKLALYAE-NSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CccHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc
Confidence 7888888776 9999999999999 8999999999998877641 1245799999998864
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00067 Score=71.18 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=79.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---cCceeEeeccccCCC-----CCCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---NRGVTKIRGTAYSSP-----HGIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---~~~i~lI~~Ttenp~-----~~Ip~~lLSR~--~ii~~~py 245 (448)
.+.|||||||.|+.+.|..|++.+++.... -+..+ .-.+.+|.+|+.++. ..+..+|..|. ..|.+.|+
T Consensus 229 ~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~-~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpL 307 (444)
T PRK15115 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVR-PLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 (444)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHhhCCEE-eCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCCh
Confidence 488999999999999999999999975310 00000 001223333332211 11234444443 24555666
Q ss_pred CH--HHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 246 QD--EEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 246 s~--~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
.. +||..+++. +. ++++|++.|..+.--|+.|..-|.+++++..+ .+..|+.+++..
T Consensus 308 r~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred HhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 54 355433321 10 89999999999988899999999999997654 244688877754
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=63.98 Aligned_cols=239 Identities=16% Similarity=0.162 Sum_probs=133.1
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCC-CCcccccCCCCCcch-hh-hhhhccCccccccCCCccCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMV-WPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~g-pf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~ 104 (448)
++-.++++--. .+-.||=..+..+..-|.+++..-+-.- |-+.+.|+.-+|||+ .+ -...- ...+|. .++.
T Consensus 22 l~~~eRI~~i~-~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h----p~~~d~-~~~~ 95 (302)
T PF05621_consen 22 LSDEERIAYIR-ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH----PPQSDE-DAER 95 (302)
T ss_pred cCHHHHHHHHh-cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC----CCCCCC-CCcc
Confidence 33344444333 3667999999999888888877544332 447889975337765 11 00000 011111 0001
Q ss_pred CC--ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCC-CCCCchHHHHHHHHHHHHHHHhCcccccCeEEEE
Q psy1686 105 TK--DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGD-TGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181 (448)
Q Consensus 105 ~~--fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~-~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfI 181 (448)
.+ ++++|.+.-.+ .+ -++= +.++...- .++=..+++.++.... ...| ..+|+|
T Consensus 96 ~PVv~vq~P~~p~~~-----------~~--Y~~I---L~~lgaP~~~~~~~~~~~~~~~~ll---r~~~-----vrmLII 151 (302)
T PF05621_consen 96 IPVVYVQMPPEPDER-----------RF--YSAI---LEALGAPYRPRDRVAKLEQQVLRLL---RRLG-----VRMLII 151 (302)
T ss_pred ccEEEEecCCCCChH-----------HH--HHHH---HHHhCcccCCCCCHHHHHHHHHHHH---HHcC-----CcEEEe
Confidence 11 45555443221 00 0000 11121111 1111133443333222 1223 489999
Q ss_pred eccCCCC-------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHH-HHHH
Q psy1686 182 DEVHMLD-------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEE-IQAI 253 (448)
Q Consensus 182 DEVH~L~-------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~e-I~~I 253 (448)
||+|.+- .+..|+|-..-.+-..|+|.+.|...... +.--+.+-||+..+.+.++..++ ....
T Consensus 152 DE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a---------l~~D~QLa~RF~~~~Lp~W~~d~ef~~L 222 (302)
T PF05621_consen 152 DEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA---------LRTDPQLASRFEPFELPRWELDEEFRRL 222 (302)
T ss_pred echHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH---------hccCHHHHhccCCccCCCCCCCcHHHHH
Confidence 9999972 24455554554554567775555542221 11236788999999999988654 3444
Q ss_pred HHH--hc---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 254 LKI--RL---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 254 L~~--Ra---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
|.- +. -+++...+|-..+ +|..=.-.++|..|+..|...|...||.+.+..+
T Consensus 223 L~s~e~~LPLr~~S~l~~~~la~~i~~~s-~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 223 LASFERALPLRKPSNLASPELARRIHERS-EGLIGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 431 11 4555558899998 8988899999999999888788889999888764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=70.30 Aligned_cols=134 Identities=14% Similarity=0.175 Sum_probs=93.7
Q ss_pred CeEEEEeccCCCCH------------HHHHHHHHhhhhcCCC-eEEEEecCceeEeeccc--cCCCCCCChhhhhhcc-c
Q psy1686 176 PGVLFIDEVHMLDI------------ECFSFLNRALESEMSP-VVITATNRGVTKIRGTA--YSSPHGIPIDLLDRMV-I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Tt--enp~~~Ip~~lLSR~~-i 239 (448)
.||+|||||+-+.. ..|..|||.+|...-. ....-.++.|-+|.+-. ...|..+-|.|..|+- +
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 48999999998842 3699999999975421 11122344565554432 2223346689999996 8
Q ss_pred ccCCCCCHHHHHHHHHH---------hc----------CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhhhh
Q psy1686 240 IPTQPYQDEEIQAILKI---------RL----------MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVVCRRR 293 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~---------Ra----------i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~a~~~ 293 (448)
+.|++|+.+++..||.. .+ ++++|+..||+.|. +..+|.--.+++....-+.-+
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe 407 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFE 407 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc
Confidence 99999999999999952 11 89999999999973 569999999999876422111
Q ss_pred C------CCcccHHHHHHHHHH
Q psy1686 294 K------ATEICMEDIRKVYAL 309 (448)
Q Consensus 294 ~------~~~It~e~V~~~~~l 309 (448)
. .-.||.+.|+..+.-
T Consensus 408 ~p~~~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 408 APDLSGQNITIDADYVSKKLGA 429 (441)
T ss_pred CCCCCCCEEEECHHHHHhHHHH
Confidence 1 125888888766653
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00094 Score=70.80 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=93.1
Q ss_pred CeEEEEeccCCCCH------------HHHHHHHHhhhhcCCC-eEEEEecCceeEeecc--c-cCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLDI------------ECFSFLNRALESEMSP-VVITATNRGVTKIRGT--A-YSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~T--t-enp~~~Ip~~lLSR~~- 238 (448)
.||+|||||+-+.. ..|..|||.+|...-. ...--.|+.|-+|.+= . ..|+ .+-|.|..|+-
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~-DlIPEl~GR~Pi 328 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPS-DLIPELQGRFPI 328 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChh-hccHHHhCccce
Confidence 48999999998842 3689999999975422 1111234455555332 2 2343 46689999996
Q ss_pred cccCCCCCHHHHHHHHHH--h-------c----------CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhhh
Q psy1686 239 IIPTQPYQDEEIQAILKI--R-------L----------MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVVCRR 292 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~--R-------a----------i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~a~~ 292 (448)
++.|+||+.+++..||.. . + ++++|++.||+.|. +..+|.--.+++....-..-
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~F 408 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISF 408 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhc
Confidence 899999999999999952 1 1 99999999999973 55999999999988643211
Q ss_pred ----hCC--CcccHHHHHHHHHH
Q psy1686 293 ----RKA--TEICMEDIRKVYAL 309 (448)
Q Consensus 293 ----~~~--~~It~e~V~~~~~l 309 (448)
... -.||.+.|+..++-
T Consensus 409 e~p~~~~~~v~I~~~~V~~~l~~ 431 (443)
T PRK05201 409 EAPDMSGETVTIDAAYVDEKLGD 431 (443)
T ss_pred cCCCCCCCEEEECHHHHHHHHHH
Confidence 111 25888888766653
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0029 Score=68.36 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=78.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe----cCceeEeeccccCC-----CCCCChhhhhhcc--cccCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT----NRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT----~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~p 244 (448)
.+.||||||+.|..+.|..|++.+++.....+ .. .-.+-+|.+|+.+. ......+|..|.. .|.+.|
T Consensus 282 gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPp 359 (509)
T PRK05022 282 GGTLFLDEIGELPLALQAKLLRVLQYGEIQRV--GSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPP 359 (509)
T ss_pred CCEEEecChhhCCHHHHHHHHHHHhcCCEeeC--CCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCC
Confidence 48899999999999999999999987431000 00 00122333333221 1224577777763 577888
Q ss_pred CCH--HHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy1686 245 YQD--EEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR 291 (448)
Q Consensus 245 ys~--~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~ 291 (448)
|.+ +||..+.+. +. ++++|+..|..+.=-|+.|.--|.+++|+..+.
T Consensus 360 LreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 360 LRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred chhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 876 466544331 11 999999999999888999999999999987763
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=70.36 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=80.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe---cCceeEeeccccCCCC-----CCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT---NRGVTKIRGTAYSSPH-----GIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT---~~~i~lI~~Ttenp~~-----~Ip~~lLSR~--~ii~~~py 245 (448)
.|.||||||+.|..+.|..|++.+|+.....+ ..+ .-.+-+|.+|+.++.. ....+|..|+ ..+++.||
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~-G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPL 401 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV-GGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPL 401 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEec-CCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCCh
Confidence 48899999999999999999999997431100 000 0112233333333111 1235677775 47888898
Q ss_pred CH--HHHHHHHHH---h-c------CCHHHH-------HHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 246 QD--EEIQAILKI---R-L------MQTDGL-------RVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 246 s~--~eI~~IL~~---R-a------i~deal-------~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.+ +||..+... + + ++++++ +.|..+.--|+.|.--|++++++.++.......|+.+++.
T Consensus 402 ReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 402 RERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred hhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 86 466544431 1 1 566655 6777777789999999999999876532222456666553
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=65.93 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=66.1
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----------H-H-HHHHHHhhhhc--------
Q psy1686 143 LFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----------E-C-FSFLNRALESE-------- 202 (448)
Q Consensus 143 ~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----------~-~-f~~Llk~lEe~-------- 202 (448)
++++--+|--.-||+....|...-...+ .|.|||||||+-+-. . . +..|+..++.+
T Consensus 184 L~sk~vGEsEk~IR~~F~~A~~~a~~~~----aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~ 259 (413)
T PLN00020 184 LESENAGEPGKLIRQRYREAADIIKKKG----KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGD 259 (413)
T ss_pred hhcCcCCcHHHHHHHHHHHHHHHhhccC----CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccc
Confidence 4555556666889988877643211223 589999999997732 1 1 23455554432
Q ss_pred ------CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcccccCCCCCHHHHHHHHHHhc----CCHHHHHHHHH
Q psy1686 203 ------MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMVIIPTQPYQDEEIQAILKIRL----MQTDGLRVLTK 269 (448)
Q Consensus 203 ------~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~ii~~~pys~~eI~~IL~~Ra----i~deal~~La~ 269 (448)
..+ .+|.+||+ |..|+++|+. |+-.+.. .-+.++-.+||+.-. ++.+.+..|++
T Consensus 260 w~~~~~~~~V~VIaTTNr------------pd~LDpALlRpGRfDk~i~-lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~ 326 (413)
T PLN00020 260 WREKEEIPRVPIIVTGND------------FSTLYAPLIRDGRMEKFYW-APTREDRIGVVHGIFRDDGVSREDVVKLVD 326 (413)
T ss_pred ccccccCCCceEEEeCCC------------cccCCHhHcCCCCCCceeC-CCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 122 23333333 7789999998 7743322 346777778877322 66666666665
Q ss_pred Hc
Q psy1686 270 IA 271 (448)
Q Consensus 270 ~a 271 (448)
.-
T Consensus 327 ~f 328 (413)
T PLN00020 327 TF 328 (413)
T ss_pred cC
Confidence 53
|
|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0029 Score=63.76 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=84.4
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhh---cCC-C-eEEEEecCceeEeeccccCCCCCC---ChhhhhhcccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALES---EMS-P-VVITATNRGVTKIRGTAYSSPHGI---PIDLLDRMVIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~-p-i~IlaT~~~i~lI~~Ttenp~~~I---p~~lLSR~~ii~~~pys~ 247 (448)
+.+++|++++.+.....+..++.+.+ ++. + .+++...+. .....++ -.++.++|.++.+.+++.
T Consensus 77 ~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~--------~~~~~k~~k~~k~~~~~~~~~~~~~~~~ 148 (340)
T PRK05574 77 RKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPK--------LDKAKKKSAWFKALKKKAVVVEAQPPKE 148 (340)
T ss_pred CeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCc--------CCHHHHhhHHHHHHHhCceEEEcCCCCH
Confidence 47899999999966533333333333 232 2 222222221 0111112 356777899999999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++...++..+ ++++|+++|++.. ++|++.+.+-|+....++. ++. ||.++|+++..
T Consensus 149 ~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~El~KL~l~~~--~~~-It~~~I~~~i~ 211 (340)
T PRK05574 149 AELPQWIQQRLKQQGLQIDAAALQLLAERV-EGNLLALAQELEKLALLYP--DGK-ITLEDVEEAVP 211 (340)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CchHHHHHHHHHHHHhhcC--CCC-CCHHHHHHHHh
Confidence 99988887655 9999999999999 8999999999999877652 233 99999998875
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=63.03 Aligned_cols=139 Identities=23% Similarity=0.259 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCC--CCCC
Q psy1686 155 VREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSS--PHGI 229 (448)
Q Consensus 155 iR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp--~~~I 229 (448)
+=+++++........|+. +.++++||.|-|+.+....|....+=. -.| -.+.+||=..-+| -...
T Consensus 114 ~~e~~~~~L~al~~~g~r---~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-------l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 114 VLEQIDRELAALVKKGKR---PVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-------LSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred HHHHHHHHHHHHHHhCCC---CeEEeehhHhhhChhHHHHHHHHHhhcccccCc-------eeeeecCCcccchhhchHH
Confidence 334566666666667753 589999999999999888877665421 122 1234455444333 2222
Q ss_pred Chhhhhhccc-ccCCCCCHHHHHHHHHHhc---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCccc
Q psy1686 230 PIDLLDRMVI-IPTQPYQDEEIQAILKIRL---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEIC 299 (448)
Q Consensus 230 p~~lLSR~~i-i~~~pys~~eI~~IL~~Ra---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It 299 (448)
-..+--||.+ |.+.||+.++....|+.|. ++++++.+|...+ +|-+|---++...|...|...++..|+
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-qg~P~lin~~~~~Al~~a~~a~~~~v~ 262 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-QGIPRLINNLATLALDAAYSAGEDGVS 262 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCCCccc
Confidence 3477789998 9999999998888777654 9999999999998 998988888888887766556677788
Q ss_pred HHHHH
Q psy1686 300 MEDIR 304 (448)
Q Consensus 300 ~e~V~ 304 (448)
...++
T Consensus 263 ~a~~~ 267 (269)
T COG3267 263 EAEIK 267 (269)
T ss_pred hhhcc
Confidence 76654
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=67.03 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=25.1
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..||||+||+..|++...+.|...+|+-
T Consensus 106 h~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 106 HRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp TTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred cCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 4599999999999999999999999985
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0069 Score=66.71 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=123.8
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCC--------CC-CCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEV--------VM-VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~k--------i~-gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
.++..|.++-|.+.++....=+++-.++.+ |+ | +.+.|||.+|||. ||-.+. +.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkG--vlLvGpPGTGKTLLAkAvAg-------EA~------ 208 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKG--VLLVGPPGTGKTLLAKAVAG-------EAG------ 208 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccc--eeEecCCCCCcHHHHHHHhc-------ccC------
Confidence 344568999999999999888888888543 33 6 7788998557775 552211 111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.+|... +-| .|-.+|.|. +. +.+|+-..++.+ . -|+|+||||+
T Consensus 209 VPFf~i----------------------SGS---~FVemfVGv-GA--sRVRdLF~qAkk------~---aP~IIFIDEi 251 (596)
T COG0465 209 VPFFSI----------------------SGS---DFVEMFVGV-GA--SRVRDLFEQAKK------N---APCIIFIDEI 251 (596)
T ss_pred CCceec----------------------cch---hhhhhhcCC-Cc--HHHHHHHHHhhc------c---CCCeEEEehh
Confidence 123220 011 133344444 11 788887766532 2 2799999999
Q ss_pred CCCCH-----------H---HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCH
Q psy1686 185 HMLDI-----------E---CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQD 247 (448)
Q Consensus 185 H~L~~-----------~---~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~ 247 (448)
+-..+ + ..|-|+--++-+- +|.++++|.||+- |--+-++||- |+ ..+.....+.
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-------~~~gviviaaTNR--pdVlD~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------GNEGVIVIAATNR--PDVLDPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccCC-------CCCceEEEecCCC--cccchHhhcCCCCcceeeecCCcch
Confidence 98854 2 3444444444332 3344455555431 1113234331 22 1333444555
Q ss_pred HHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 248 ~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
..-++||+..+ +++++ +..||+..-+-+.-+--|++-.|+.+|-+++...|+..++.++...
T Consensus 323 ~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~dr 389 (596)
T COG0465 323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDR 389 (596)
T ss_pred hhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHH
Confidence 55577777433 44333 4447777522255566677766777766678889999999999874
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0058 Score=70.04 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=84.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC---CeEEEEe-cCceeEeecccc-----C------CCCCCChhhhhhc-cc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS---PVVITAT-NRGVTKIRGTAY-----S------SPHGIPIDLLDRM-VI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~---pi~IlaT-~~~i~lI~~Tte-----n------p~~~Ip~~lLSR~-~i 239 (448)
.|++||||++.++...|.+|+.++|+..- ..=+.++ +....+|.+++. + --..+|++||||+ +|
T Consensus 558 gGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 558 GGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred CCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 48999999999999999999999987531 0000000 111123333321 1 1355899999999 55
Q ss_pred ccCCCCCHH------------------------------------------------------HHHHHHHH-h--c---C
Q psy1686 240 IPTQPYQDE------------------------------------------------------EIQAILKI-R--L---M 259 (448)
Q Consensus 240 i~~~pys~~------------------------------------------------------eI~~IL~~-R--a---i 259 (448)
|-+.....+ -|++-|.+ | + +
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~L 717 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKL 717 (915)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCC
Confidence 544333222 22222221 1 1 8
Q ss_pred CHHHHHHHHHH-----cC-------------------------CC------CHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 260 QTDGLRVLTKI-----AL-------------------------DT------SLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 260 ~deal~~La~~-----a~-------------------------~G------d~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
+++|.++|.++ .. .| ++|..-.++..|-..|+.+-+..|+.+||
T Consensus 718 s~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv 797 (915)
T PTZ00111 718 SDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADA 797 (915)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHH
Confidence 99999888653 10 11 47888888887766676556678999999
Q ss_pred HHHHHHh
Q psy1686 304 RKVYALF 310 (448)
Q Consensus 304 ~~~~~lf 310 (448)
+++..++
T Consensus 798 ~~Ai~L~ 804 (915)
T PTZ00111 798 LQAVQIV 804 (915)
T ss_pred HHHHHHH
Confidence 9999875
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0041 Score=69.61 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=76.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEE--EEecCceeEeeccccCCC-----CCCChhhhhhc--ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVI--TATNRGVTKIRGTAYSSP-----HGIPIDLLDRM--VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~I--laT~~~i~lI~~Ttenp~-----~~Ip~~lLSR~--~ii~~~pys 246 (448)
.+.||||||+.|..+.|..|++.+++.....+= -....++-+|.+|+.++. -....+|..|. ..|.+.|+.
T Consensus 471 ~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLr 550 (686)
T PRK15429 471 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 550 (686)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChh
Confidence 489999999999999999999999874210000 000011223333332211 11334566663 467888887
Q ss_pred H--HHHHHHHHH-------hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 247 D--EEIQAILKI-------RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 247 ~--~eI~~IL~~-------Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
+ +||..+++. +. +++++++.|..+.--|+.|.--|.+++|+..+
T Consensus 551 eR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 551 ERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred hhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 6 466544431 10 89999999999988999999999999998765
|
|
| >KOG0731|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=66.76 Aligned_cols=212 Identities=20% Similarity=0.239 Sum_probs=120.9
Q ss_pred cccccccchhhhhhhHHHHHHHhcCC--------CC-CCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEV--------VM-VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~k--------i~-gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.|.++.|++.++...-=+++-.++.+ ++ | +++.|||.+|||- ||.. |.+.+ .+|+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkG--vLL~GPPGTGKTLLAKAi-------AGEAg------VPF~ 373 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKG--VLLVGPPGTGKTLLAKAI-------AGEAG------VPFF 373 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCc--eEEECCCCCcHHHHHHHH-------hcccC------Ccee
Confidence 48999999999999777777666543 22 7 7889999558874 5532 12222 3666
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
+|--.| |-.++-|.. .+.+|+....+.. . .|.|+||||++-+.
T Consensus 374 svSGSE-------------------------FvE~~~g~~---asrvr~lf~~ar~------~---aP~iifideida~~ 416 (774)
T KOG0731|consen 374 SVSGSE-------------------------FVEMFVGVG---ASRVRDLFPLARK------N---APSIIFIDEIDAVG 416 (774)
T ss_pred eechHH-------------------------HHHHhcccc---hHHHHHHHHHhhc------c---CCeEEEeccccccc
Confidence 642222 444444442 2777776655421 2 48999999998774
Q ss_pred H------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCCHHHHHHH
Q psy1686 189 I------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAI 253 (448)
Q Consensus 189 ~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~~eI~~I 253 (448)
. +.-+.||..+=+-... .++.+++++++|+ + +-.+-++||- |+ ..|....-+...=.+|
T Consensus 417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf----~~~~~vi~~a~tn-r-~d~ld~allrpGRfdr~i~i~~p~~~~r~~i 490 (774)
T KOG0731|consen 417 RKRGGKGTGGGQDEREQTLNQLLVEMDGF----ETSKGVIVLAATN-R-PDILDPALLRPGRFDRQIQIDLPDVKGRASI 490 (774)
T ss_pred ccccccccCCCChHHHHHHHHHHHHhcCC----cCCCcEEEEeccC-C-ccccCHHhcCCCccccceeccCCchhhhHHH
Confidence 3 3334444444332211 1223333444432 1 3334444442 22 1344455555555677
Q ss_pred HHHhc----CC--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 254 LKIRL----MQ--TDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 254 L~~Ra----i~--deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++..+ .+ +.-+.-||....+-+.-+--|+...|...|-+++...|+..++..+..
T Consensus 491 ~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 491 LKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 77544 43 333333555552335555566666776666566778899999998887
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0054 Score=64.65 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=88.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEE---EecCceeEeeccccCC-----CCCCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVIT---ATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~Il---aT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~py 245 (448)
.+.||||||+.|+.+.|..|++.+++.....+ - ...-++-+|.+|+.++ ......+|+.|+ ..|.+.||
T Consensus 229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~-~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpL 307 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRV-GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPL 307 (463)
T ss_pred CCeEEEEchhhCCHHHHHHHHHHHhcCcEEEC-CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCc
Confidence 48899999999999999999999987431000 0 0000122333333221 112345888886 47888999
Q ss_pred C--HHHHHHHHHHhc-------------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 246 Q--DEEIQAILKIRL-------------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 246 s--~~eI~~IL~~Ra-------------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
. .+||..++.... ++++|+..|..+.--|+.|.--|.++++...+. +..|+.+++...
T Consensus 308 r~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~ 380 (463)
T TIGR01818 308 RERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAE 380 (463)
T ss_pred ccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHH
Confidence 9 678876655311 899999999999889999999999999987652 346888877543
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.007 Score=64.92 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=125.0
Q ss_pred cccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcc-hhh-hhhhccCccccccCCCccCCCCccccCCCccc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQK-VKK-ISTATGREEEPDYDGWLADVTKDLRCPDGELQ 116 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKt-t~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~ 116 (448)
...++||+..+... ++++|++=--+.-.+.++|.-.+||- +|+ |-..+.+- +.+||.+.||-+.
T Consensus 139 ~~~~liG~S~am~~---l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-----------~~PFVavNcaAip 204 (464)
T COG2204 139 LGGELVGESPAMQQ---LRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-----------KGPFIAVNCAAIP 204 (464)
T ss_pred ccCCceecCHHHHH---HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-----------CCCceeeecccCC
Confidence 46899999998765 56665432112244678885423663 355 33222211 2478887777654
Q ss_pred ceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHH
Q psy1686 117 KRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196 (448)
Q Consensus 117 k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Ll 196 (448)
. +|.| |.+|.-.+|.-|.-.+..+.. .+. + ..|.||+|||.-+..+.|.-|+
T Consensus 205 ~--------~l~E-----------SELFGhekGAFTGA~~~r~G~-----fE~--A--~GGTLfLDEI~~mpl~~Q~kLL 256 (464)
T COG2204 205 E--------NLLE-----------SELFGHEKGAFTGAITRRIGR-----FEQ--A--NGGTLFLDEIGEMPLELQVKLL 256 (464)
T ss_pred H--------HHHH-----------HHhhcccccCcCCcccccCcc-----eeE--c--CCceEEeeccccCCHHHHHHHH
Confidence 2 1111 112322333333222221111 011 1 2489999999999999999999
Q ss_pred HhhhhcCCCeEEEEe----cCceeEeeccccCCC-----CCCChhhhhhccc--ccCCCCCH--HHHHHHHHH---hc--
Q psy1686 197 RALESEMSPVVITAT----NRGVTKIRGTAYSSP-----HGIPIDLLDRMVI--IPTQPYQD--EEIQAILKI---RL-- 258 (448)
Q Consensus 197 k~lEe~~~pi~IlaT----~~~i~lI~~Ttenp~-----~~Ip~~lLSR~~i--i~~~pys~--~eI~~IL~~---Ra-- 258 (448)
|++|+-.-..+ .. .-.+-+|.+|+.|.. -..=.+|.-|.-+ +++.||-+ +||--+... ++
T Consensus 257 RvLqe~~~~rv--G~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~ 334 (464)
T COG2204 257 RVLQEREFERV--GGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAA 334 (464)
T ss_pred HHHHcCeeEec--CCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHH
Confidence 99998642111 00 001123334432211 1123567777653 44566654 455333221 21
Q ss_pred --------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 259 --------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 259 --------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
++++|+..|..+.=-|+.|.--|.+++++..+. +..|+.+++.
T Consensus 335 ~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~---~~~i~~~~l~ 385 (464)
T COG2204 335 ELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE---GPEIEVEDLP 385 (464)
T ss_pred HcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC---ccccchhhcc
Confidence 999999999999888999999999999988763 3457776654
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0063 Score=67.75 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=89.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE-----E----EEe---cCceeEeeccccCCCCCCChhhhhhccc----
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV-----I----TAT---NRGVTKIRGTAYSSPHGIPIDLLDRMVI---- 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~-----I----laT---~~~i~lI~~Ttenp~~~Ip~~lLSR~~i---- 239 (448)
.|+|||||+..|+..+|+.|++++++...... . +.+ .-.+.+|.+++.+....+.++|++|+-.
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~ 306 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYE 306 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEE
Confidence 49999999999999999999999976431110 0 000 0123455555555556678999999842
Q ss_pred ccCCC---CCHHHHHHHHHH---hc--------CCHHHHHHHHHHcC----CC-----CHHHHHHHHHHHHHHhhhhCCC
Q psy1686 240 IPTQP---YQDEEIQAILKI---RL--------MQTDGLRVLTKIAL----DT-----SLRYAIQLITTASVVCRRRKAT 296 (448)
Q Consensus 240 i~~~p---ys~~eI~~IL~~---Ra--------i~deal~~La~~a~----~G-----d~R~AL~lLe~a~~~a~~~~~~ 296 (448)
+.|.. -+.+.....+.. ++ ++++|+..|.+.+. .- ..|..-+++..|...|..++..
T Consensus 307 v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~ 386 (637)
T PRK13765 307 VYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAE 386 (637)
T ss_pred EEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccc
Confidence 34443 234444444332 11 89999988888742 21 3788888999988888777788
Q ss_pred cccHHHHHHHHH
Q psy1686 297 EICMEDIRKVYA 308 (448)
Q Consensus 297 ~It~e~V~~~~~ 308 (448)
.|+.+||.++..
T Consensus 387 ~i~~~~v~~a~~ 398 (637)
T PRK13765 387 LTTAEHVLEAKK 398 (637)
T ss_pred eecHHHHHHHHH
Confidence 899999988764
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.017 Score=61.90 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
..||||+||.-.|.....++|---+|+-
T Consensus 283 H~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 283 HNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred cCCEEEeeccchhhHHHHHHHhCccccC
Confidence 3599999999999998888888888864
|
|
| >KOG1970|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.018 Score=62.64 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=74.8
Q ss_pred cCeEEEEeccCCCCH-----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCH
Q psy1686 175 VPGVLFIDEVHMLDI-----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQD 247 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~ 247 (448)
.+++++|||+=.... ..++.|.........|+++.-|+- .+.+ ..|++-..|.++--+|. .|.|.|...
T Consensus 194 ~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~---~~~g-~nnq~rlf~~d~q~~~ri~~IsFNPIa~ 269 (634)
T KOG1970|consen 194 DKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDS---LSNG-NNNQDRLFPKDIQEEPRISNISFNPIAP 269 (634)
T ss_pred CceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEecc---ccCC-CcchhhhchhhhhhccCcceEeecCCcH
Confidence 357899999855432 234445555555567866666664 2222 23445556677766664 899999999
Q ss_pred HHHHHHHHHhc------CC------HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQ------TDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~------deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
.=|++-|+.-| .+ ...++.|+..+ +||+|-|||.|...+
T Consensus 270 T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s-~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 270 TIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS-GGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc-CccHHHHHhHhhhhc
Confidence 99999988544 33 45578888888 999999999999774
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0041 Score=69.21 Aligned_cols=92 Identities=29% Similarity=0.375 Sum_probs=58.7
Q ss_pred CeEEEEeccCCCCH----HHHHHHHHhhhhc----C-----------CCeEEEEecCceeEeeccccCCCCCCChhhhhh
Q psy1686 176 PGVLFIDEVHMLDI----ECFSFLNRALESE----M-----------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR 236 (448)
Q Consensus 176 ~~VLfIDEVH~L~~----~~f~~Llk~lEe~----~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR 236 (448)
-.++.||||+-+.. +--++|+..+.-. + +-++.+||-. ..-.||++||+|
T Consensus 506 NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN-----------~idtIP~pLlDR 574 (906)
T KOG2004|consen 506 NPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN-----------VIDTIPPPLLDR 574 (906)
T ss_pred CceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc-----------ccccCChhhhhh
Confidence 47888999999864 2245555555421 1 1133334432 255699999999
Q ss_pred cccccCCCCCHHHHHHHHHH----hc------------CCHHHHH-HHHHHcCCCCHHH
Q psy1686 237 MVIIPTQPYQDEEIQAILKI----RL------------MQTDGLR-VLTKIALDTSLRY 278 (448)
Q Consensus 237 ~~ii~~~pys~~eI~~IL~~----Ra------------i~deal~-~La~~a~~Gd~R~ 278 (448)
+-+|.+.-|..+|=..|-++ ++ ++++|+. +|.+++-+...|.
T Consensus 575 MEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 575 MEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred hheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999986666553 11 8888864 4555553334444
|
|
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0018 Score=72.00 Aligned_cols=126 Identities=24% Similarity=0.244 Sum_probs=78.2
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcC-----------------C--C---eEEEEecCce---------eEeec---
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEM-----------------S--P---VVITATNRGV---------TKIRG--- 220 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------------~--p---i~IlaT~~~i---------~lI~~--- 220 (448)
..|||||||+-.|....++.++|++++.- . | ++|++-|... .++.+
T Consensus 225 ngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y 304 (647)
T COG1067 225 NGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGY 304 (647)
T ss_pred cCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcce
Confidence 35999999999999888888888888761 0 1 4444444321 01111
Q ss_pred -cccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHh--c--CCHHHHHHHHHHcC---------CCCHHHHHHHHHHH
Q psy1686 221 -TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR--L--MQTDGLRVLTKIAL---------DTSLRYAIQLITTA 286 (448)
Q Consensus 221 -Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~R--a--i~deal~~La~~a~---------~Gd~R~AL~lLe~a 286 (448)
.+.+.+-.++++..+||.-+. .+-+... . ++.+|+..|.+.|. .-.+|...+++..|
T Consensus 305 ~ae~~~~m~~~~~nr~k~~~~~---------~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A 375 (647)
T COG1067 305 EAEFEDTMPITDANRSKLVQFY---------VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREA 375 (647)
T ss_pred EEEEcCCCCCChHHHHHHHHHH---------HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHh
Confidence 111122233344444442211 1111111 1 77788777766631 23789999999999
Q ss_pred HHHhhhhCCCcccHHHHHHHHHH
Q psy1686 287 SVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 287 ~~~a~~~~~~~It~e~V~~~~~l 309 (448)
..+|..++...|+.+||++++..
T Consensus 376 ~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 376 GDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hHHHhcCCcccCcHHHHHHHHHh
Confidence 99988777889999999999975
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.014 Score=61.31 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=82.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEE--EecCceeEeeccccCC-----CCCCChhhhhhcc--cccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVIT--ATNRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~Il--aT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~pys 246 (448)
.+.||||||+.|+...|..|++.+++.....+=. ...-.+-+|.+|+.++ .....++|..|+. .|.+.|+.
T Consensus 234 ~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr 313 (445)
T TIGR02915 234 GGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLR 313 (445)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCch
Confidence 4889999999999999999999999742100000 0000122333333221 1234566777763 67788887
Q ss_pred HH--HHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 247 DE--EIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 247 ~~--eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
.. ||..+... +. ++++++..|..+.--|+.|..-|.+++|+..+. +..|+.+++
T Consensus 314 ~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 314 SRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 53 55443331 10 899999999999888999999999999987652 346777665
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.039 Score=60.83 Aligned_cols=107 Identities=25% Similarity=0.367 Sum_probs=62.1
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCCC------
Q psy1686 143 LFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMSP------ 205 (448)
Q Consensus 143 ~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~p------ 205 (448)
+.+|..||=-+.||+..+++... -|.|+|||||+-..+ -...-|+..+.+.-.+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~---------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSN---------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhcc---------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 56777777778999998887532 489999999999964 2234466666654332
Q ss_pred -eEEEEecCceeEeeccccCCCCCCChhhhhhcc----cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHc
Q psy1686 206 -VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV----IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIA 271 (448)
Q Consensus 206 -i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~----ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a 271 (448)
++|.|||+ |-.+-++| .|.. -|-+.--+...=.+||+.-| ++.+. +..||+..
T Consensus 330 VlVIgATnR------------PDslDpaL-RRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lT 392 (802)
T KOG0733|consen 330 VLVIGATNR------------PDSLDPAL-RRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLT 392 (802)
T ss_pred eEEEecCCC------------CcccCHHH-hccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcC
Confidence 44444544 55565554 3432 23333334444455666444 32221 34566664
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.022 Score=60.37 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=85.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-----eEEEEecCceeEeeccccCC-----CCCCChhhhhhc--ccccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-----VVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRM--VIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-----i~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~--~ii~~~ 243 (448)
.|.||||||+.|+.+.|..|++.+++.... .-+ .-.+-+|.+|+.++ ......+|+.|+ ..|.+.
T Consensus 233 ~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~---~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~P 309 (469)
T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV---KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLP 309 (469)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeE---EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCC
Confidence 478999999999999999999999974310 000 01122333333221 123457888886 488888
Q ss_pred CCCH--HHHHHHHHH---h-c---------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 244 PYQD--EEIQAILKI---R-L---------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 244 pys~--~eI~~IL~~---R-a---------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
|+.+ +||..++.. + + ++++|+..|..+.--|+.|.--|.+++++..+ .+..|+.+++.
T Consensus 310 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 310 PLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred CcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 8876 456544432 1 0 89999999999998999999999999998765 24468888774
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.023 Score=59.65 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=81.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEE---ecCceeEeeccccCC-----CCCCChhhhhhcc--cccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITA---TNRGVTKIRGTAYSS-----PHGIPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~Ila---T~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~--ii~~~py 245 (448)
.++||||||+.|+...|..|++.+++.....+ -. -..++-+|.+|+.++ ......++..|+. .+.+.|+
T Consensus 238 ~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~-~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppL 316 (457)
T PRK11361 238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERI-GGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316 (457)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCcEEeC-CCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence 48999999999999999999999987421000 00 001122333333221 1123456777753 5667777
Q ss_pred CH--HHHHHHHHH-------h----c--CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 246 QD--EEIQAILKI-------R----L--MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 246 s~--~eI~~IL~~-------R----a--i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.. +||..+... + . ++++|++.|..+.--|+.|..-+.++.+...+ .+..|+.+++.
T Consensus 317 reR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~ 387 (457)
T PRK11361 317 RDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLP 387 (457)
T ss_pred hhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHCh
Confidence 74 455444321 1 0 89999999999988899999999999997654 23468877765
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0046 Score=63.40 Aligned_cols=133 Identities=19% Similarity=0.314 Sum_probs=78.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCe----EEEEecCceeEeeccccCCCC-------------CCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPV----VITATNRGVTKIRGTAYSSPH-------------GIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi----~IlaT~~~i~lI~~Ttenp~~-------------~Ip~~lLSR~~ 238 (448)
.||.+|||+..++.+..++|+.++|.-..++ ++..-+-.-.++++. ||.+ .+|++||||+=
T Consensus 122 ~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~--NP~~g~~~~~~~~~~ni~l~~~LLSRFD 199 (331)
T PF00493_consen 122 GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA--NPKFGRYDPNKSLSENINLPPPLLSRFD 199 (331)
T ss_dssp TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE----TT--S-TTS-CGCCT-S-CCCHCC-S
T ss_pred CceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH--hhhhhhcchhhhhHHhcccchhhHhhcC
Confidence 4999999999999999999999999743110 000001111233333 2333 58999999995
Q ss_pred -cccC-CCCCHH----------------------------------HHHHHHHH-h--c---CCHHHHHHHHHHcC----
Q psy1686 239 -IIPT-QPYQDE----------------------------------EIQAILKI-R--L---MQTDGLRVLTKIAL---- 272 (448)
Q Consensus 239 -ii~~-~pys~~----------------------------------eI~~IL~~-R--a---i~deal~~La~~a~---- 272 (448)
+|.+ .+.+.+ .+++.+.+ | . ++++|.++|.++=.
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~ 279 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRK 279 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCH
T ss_pred EEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcc
Confidence 5443 333311 11222221 1 1 99999999988710
Q ss_pred ---------CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 ---------DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 ---------~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.-++|.--.++..|-..|+-+-+..|+.+||+.+..+|
T Consensus 280 ~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 280 ESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 11466667788877777776677899999999999876
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.014 Score=61.94 Aligned_cols=89 Identities=25% Similarity=0.236 Sum_probs=48.8
Q ss_pred cCeEEEEeccCCCCH------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 175 VPGVLFIDEVHMLDI------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.|.|+||||||++-. -.-.||+...= .-.+.++.+.+||||+ =|+.+-.+++-|+.=+-+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~------~~s~~~drvlvigaTN--~P~e~Dea~~Rrf~kr~y 316 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG------KNSAPDDRVLVIGATN--RPWELDEAARRRFVKRLY 316 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc------ccCCCCCeEEEEecCC--CchHHHHHHHHHhhceee
Confidence 589999999999821 11222222111 1122233344444443 288898899999873333
Q ss_pred CCCCHHHH-HHHHHH---hc---CCHHHHHHHHHHc
Q psy1686 243 QPYQDEEI-QAILKI---RL---MQTDGLRVLTKIA 271 (448)
Q Consensus 243 ~pys~~eI-~~IL~~---Ra---i~deal~~La~~a 271 (448)
-|+...+- ..+++. .. +.+..++.|++..
T Consensus 317 iplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~T 352 (428)
T KOG0740|consen 317 IPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVT 352 (428)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 44444433 333331 22 6666777888875
|
|
| >KOG0652|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=56.60 Aligned_cols=134 Identities=26% Similarity=0.247 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC-----------HHHHHHHHHhh---hhcCCC---eEEEEecCce
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD-----------IECFSFLNRAL---ESEMSP---VVITATNRGV 215 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~-----------~~~f~~Llk~l---Ee~~~p---i~IlaT~~~i 215 (448)
+=+|+...-+. .+ .|.|+||||++..+ .+.|--.+..+ ..+.+. .+|-|||+
T Consensus 251 kLVRDAFaLAK------Ek---aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR-- 319 (424)
T KOG0652|consen 251 KLVRDAFALAK------EK---APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR-- 319 (424)
T ss_pred HHHHHHHHHhh------cc---CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc--
Confidence 45666555442 23 37999999998763 24444333333 322221 66667776
Q ss_pred eEeeccccCCCCCCChhhhhhc---ccccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 216 TKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 216 ~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
.--+-|+||..- .-|.|.--+.+.=..|+.+.. +++++ ++.|++...+-+.-..-..---|.
T Consensus 320 ----------vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 320 ----------VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred ----------ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence 222334443211 135665555555556666544 55554 667777642112222111112345
Q ss_pred HHhhhhCCCcccHHHHHHHH
Q psy1686 288 VVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 288 ~~a~~~~~~~It~e~V~~~~ 307 (448)
.+|.+++...|+-+|.-+..
T Consensus 390 MiALRr~atev~heDfmegI 409 (424)
T KOG0652|consen 390 MIALRRGATEVTHEDFMEGI 409 (424)
T ss_pred HHHHhcccccccHHHHHHHH
Confidence 56666677788877765544
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.05 Score=55.45 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=81.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhh--hhhcccccCCCCCHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDL--LDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~l--LSR~~ii~~~pys~~eI~~I 253 (448)
+.++++... ++...+.|...++.++...+++-+.+. .....++...+ .....++.+.+.+..++.+.
T Consensus 82 ~rlViv~~~---~~~~~~~L~~~l~~~~~~~~lil~~~~--------~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~ 150 (343)
T PRK06585 82 RRLIWVRAG---SKNLAAALKALLESPPGDAFIVIEAGD--------LKKGSSLRKLFETAAYAAAIPCYADDERDLARL 150 (343)
T ss_pred ceEEEEECC---chhHHHHHHHHHcCCCCCcEEEEEcCC--------CCcccHHHHHHhcCCCeeEEecCCCCHHHHHHH
Confidence 367888843 445556677777775444332222221 11111222222 12234677888999999999
Q ss_pred HHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+..++ ++++|+++|++.. +||++.+.|-|+....++ .+...||.++|+.+..
T Consensus 151 i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly~--~~~~~It~edV~~lv~ 208 (343)
T PRK06585 151 IDDELAEAGLRITPDARALLVALL-GGDRLASRNEIEKLALYA--HGKGEITLDDVRAVVG 208 (343)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHhC
Confidence 88777 9999999999999 999999999999988775 2345799999998875
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0055 Score=55.20 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=38.8
Q ss_pred ccCeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc
Q psy1686 174 IVPGVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV 238 (448)
Q Consensus 174 i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ 238 (448)
+...|+++||++|.....|++|+.+++|.- .|.+|+||-.-+-. .+ -|.+|.++++|++
T Consensus 61 if~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~-~G-----ty~Lpea~~DRF~ 130 (131)
T PF07726_consen 61 IFTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQ-EG-----TYPLPEAQLDRFM 130 (131)
T ss_dssp T-SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT---S-----------HHHHTTSS
T ss_pred hhhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcccc-Cc-----eecCCHHHhcccc
Confidence 345899999999999999999999999873 35777777653322 12 3569999999985
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.02 Score=58.97 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=63.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc-C------------CC-eEEEEecCceeEeeccc-cCCCCCCChhhhhhcc-c
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE-M------------SP-VVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMV-I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~-~------------~p-i~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~-i 239 (448)
+.+|++||+++..++.++.|++.+|.. . .| ..++||...+-.-+.+- +..-+.+|.++++|+. +
T Consensus 135 g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 135 NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIV 214 (327)
T ss_pred CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeE
Confidence 367999999999999999999999952 1 12 22334433211000000 1223457999999997 4
Q ss_pred ccCCCCCHHHHHHHHHHhc--C----CHHHHHHHHHHc
Q psy1686 240 IPTQPYQDEEIQAILKIRL--M----QTDGLRVLTKIA 271 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra--i----~deal~~La~~a 271 (448)
+.+..++.++-.+||..++ + +++.++++++++
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred eeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 6888889988889988554 4 355667776665
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.065 Score=56.84 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=94.3
Q ss_pred cCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCC-CCC--cccccCCCCCcch-hh-hhhhccCcccccc
Q psy1686 23 SHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVM-VWP--CVMCGRGKNPQKV-KK-ISTATGREEEPDY 97 (448)
Q Consensus 23 sHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~-gpf--~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~ 97 (448)
+-|+|- -.-.-+++..++++|=-..+.+-..-|-..-.+-|-. +|| ++|+|||.+|||. |+ +...+| -||
T Consensus 338 ~~i~~~-~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG----lDY 412 (630)
T KOG0742|consen 338 HPIQGS-RSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG----LDY 412 (630)
T ss_pred chhhhh-HhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC----Cce
Confidence 345662 2223456766788887666544333333333333322 255 6789999669985 44 666677 344
Q ss_pred CCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCe
Q psy1686 98 DGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPG 177 (448)
Q Consensus 98 d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~ 177 (448)
..|.| |+|.. --.+|+ ..|-+ . -+|-...+ ..-
T Consensus 413 A~mTG----------GDVAP-----------------lG~qaV------------TkiH~----l-FDWakkS~---rGL 445 (630)
T KOG0742|consen 413 AIMTG----------GDVAP-----------------LGAQAV------------TKIHK----L-FDWAKKSR---RGL 445 (630)
T ss_pred ehhcC----------CCccc-----------------cchHHH------------HHHHH----H-HHHHhhcc---cce
Confidence 44433 33211 000112 12222 2 23432222 246
Q ss_pred EEEEeccCCC---------CHHHHHHHH----HhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCC
Q psy1686 178 VLFIDEVHML---------DIECFSFLN----RALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQ 243 (448)
Q Consensus 178 VLfIDEVH~L---------~~~~f~~Ll----k~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~ 243 (448)
+|||||.+-| +..+-++|| ++=+..---++++|||+ |--+-.++-+|.- ++.|.
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr------------pgdlDsAV~DRide~veFp 513 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAVNDRIDEVVEFP 513 (630)
T ss_pred EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC------------ccchhHHHHhhhhheeecC
Confidence 8999999988 223333333 33333333477888888 6667778888885 88888
Q ss_pred CCCHHHHHHHHH
Q psy1686 244 PYQDEEIQAILK 255 (448)
Q Consensus 244 pys~~eI~~IL~ 255 (448)
--..+|=..+|.
T Consensus 514 LPGeEERfkll~ 525 (630)
T KOG0742|consen 514 LPGEEERFKLLN 525 (630)
T ss_pred CCChHHHHHHHH
Confidence 778888777776
|
|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.074 Score=53.91 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=89.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
+.+++++....+.+...+.|...+++++.. ++|+.+.+. +.+ -++.+.+...+.++.+.|+...++...+
T Consensus 65 ~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~-------~~~--kk~~K~l~k~~~~ve~~~~~~~~l~~wi 135 (318)
T PRK05629 65 DRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGG-------GRT--KSMVPKLEKIAVVHEAAKLKPRERPGWV 135 (318)
T ss_pred ceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCc-------chh--hHHHHHHHhcceEeeCCCCCHHHHHHHH
Confidence 478889988777777778888888887655 555555431 111 1122456666778899999999998888
Q ss_pred HHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 255 KIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 255 ~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
..++ ++++|+++|+... ++|++.+-+-|+....+. ++.||.++|+.+..
T Consensus 136 ~~~~~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~~~----~~~It~e~V~~~v~ 190 (318)
T PRK05629 136 TQEFKNHGVRPTPDVVHALLEGV-GSDLRELASAISQLVEDT----QGNVTVEKVRAYYV 190 (318)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHHhcC----CCCcCHHHHHHHhC
Confidence 7766 9999999999998 889999999999764432 34699999998863
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.012 Score=63.25 Aligned_cols=210 Identities=22% Similarity=0.315 Sum_probs=114.6
Q ss_pred CCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcc-hhh-hhhhccCccccccCCCccCCCCcccc
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQK-VKK-ISTATGREEEPDYDGWLADVTKDLRC 110 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKt-t~~-I~~~~gk~~a~~~d~~~~~~~~fv~~ 110 (448)
..+|...+.|+|||..+....-=..+++.... -.+.+.|--.+||- .|+ |-.-|++ .+.+||.+
T Consensus 215 ~~~~~~~~~~iIG~S~am~~ll~~i~~VA~Sd---~tVLi~GETGtGKElvAraIH~~S~R-----------~~kPfV~~ 280 (550)
T COG3604 215 LSEVVLEVGGIIGRSPAMRQLLKEIEVVAKSD---STVLIRGETGTGKELVARAIHQLSPR-----------RDKPFVKL 280 (550)
T ss_pred ccchhcccccceecCHHHHHHHHHHHHHhcCC---CeEEEecCCCccHHHHHHHHHhhCcc-----------cCCCceee
Confidence 33455567899999999766333333333211 12445562112663 244 3222321 12467765
Q ss_pred CCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccc-cCeEEEEeccCCCCH
Q psy1686 111 PDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEI-VPGVLFIDEVHMLDI 189 (448)
Q Consensus 111 p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i-~~~VLfIDEVH~L~~ 189 (448)
.|.-+.- ||-| |.+|.-.+|.-|.-++.- .|+-|+ -.|-||+|||--|..
T Consensus 281 NCAAlPe--------sLlE-----------SELFGHeKGAFTGA~~~r----------~GrFElAdGGTLFLDEIGelPL 331 (550)
T COG3604 281 NCAALPE--------SLLE-----------SELFGHEKGAFTGAINTR----------RGRFELADGGTLFLDEIGELPL 331 (550)
T ss_pred eccccch--------HHHH-----------HHHhcccccccccchhcc----------CcceeecCCCeEechhhccCCH
Confidence 4443321 2222 234444444444433321 122221 137899999999999
Q ss_pred HHHHHHHHhhhhcCC-------C-----eEEEEecCceeEeeccccCCCCCCChhhhhhccccc--CCCCCH--HHHHHH
Q psy1686 190 ECFSFLNRALESEMS-------P-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIP--TQPYQD--EEIQAI 253 (448)
Q Consensus 190 ~~f~~Llk~lEe~~~-------p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~--~~pys~--~eI~~I 253 (448)
+.|--|+|++|+-.. + -+|-|||++.-..-. + -+.-.||.=|.-+|. +.|+-+ +||--.
T Consensus 332 ~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~---~--G~FRaDLYyRLsV~Pl~lPPLRER~~DIplL 406 (550)
T COG3604 332 ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVR---D--GEFRADLYYRLSVFPLELPPLRERPEDIPLL 406 (550)
T ss_pred HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHH---c--CcchhhhhhcccccccCCCCcccCCccHHHH
Confidence 999999999998752 1 566777765411100 0 011123333332221 233322 222111
Q ss_pred ----HH---H---hc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 254 ----LK---I---RL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 254 ----L~---~---Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
++ . |+ ++.+|++.|.++.--|+.|.--|++++|+..|
T Consensus 407 A~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 407 AGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 11 1 11 99999999999988999999999999998876
|
|
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.12 Score=58.28 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=60.3
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc------------CCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCcc
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE------------EVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLA 102 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~------------~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~ 102 (448)
|+-.++++=|=+.+.. .|++-|+- .|-+| +.++|||.+|||- ||-. |.++.
T Consensus 667 PnV~WdDVGGLeevK~---eIldTIqlPL~hpeLfssglrkRSG--ILLYGPPGTGKTLlAKAV-------ATEcs---- 730 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKT---EILDTIQLPLKHPELFSSGLRKRSG--ILLYGPPGTGKTLLAKAV-------ATECS---- 730 (953)
T ss_pred CccchhcccCHHHHHH---HHHHHhcCcccChhhhhccccccce--eEEECCCCCchHHHHHHH-------Hhhce----
Confidence 5555788878777764 46776664 33568 8899999557763 5521 23333
Q ss_pred CCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 103 DVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 103 ~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
..|.+.-.=| +.-+.-|. =-..||+...+|. .+ .|.|+|.|
T Consensus 731 --L~FlSVKGPE-------------------------LLNMYVGq---SE~NVR~VFerAR-------~A--~PCVIFFD 771 (953)
T KOG0736|consen 731 --LNFLSVKGPE-------------------------LLNMYVGQ---SEENVREVFERAR-------SA--APCVIFFD 771 (953)
T ss_pred --eeEEeecCHH-------------------------HHHHHhcc---hHHHHHHHHHHhh-------cc--CCeEEEec
Confidence 3676631111 22233333 1267998887763 22 58999999
Q ss_pred ccCCCC
Q psy1686 183 EVHMLD 188 (448)
Q Consensus 183 EVH~L~ 188 (448)
|++.|-
T Consensus 772 ELDSlA 777 (953)
T KOG0736|consen 772 ELDSLA 777 (953)
T ss_pred cccccC
Confidence 999993
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.02 Score=58.82 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH--------------HHHHHHHHhhhhcCC----------C--e
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI--------------ECFSFLNRALESEMS----------P--V 206 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~~----------p--i 206 (448)
.++-+.+.+-.... ++.-..-.+||++||||+-..+ ..|.+|+|.+|.... | -
T Consensus 141 EDVENillkLlqaa-dydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe 219 (408)
T COG1219 141 EDVENILLKLLQAA-DYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQE 219 (408)
T ss_pred hhHHHHHHHHHHHc-ccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccc
Confidence 45655555443321 2222223479999999998843 569999999998641 2 3
Q ss_pred EEEEecCceeEee-c--------------------c-ccC--------------------CCCCCChhhhhhcc-cccCC
Q psy1686 207 VITATNRGVTKIR-G--------------------T-AYS--------------------SPHGIPIDLLDRMV-IIPTQ 243 (448)
Q Consensus 207 ~IlaT~~~i~lI~-~--------------------T-ten--------------------p~~~Ip~~lLSR~~-ii~~~ 243 (448)
||--.|.+|-+|. | . +.. --|++.|.|.-|.- +-.+.
T Consensus 220 ~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~ 299 (408)
T COG1219 220 FIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLE 299 (408)
T ss_pred eEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehh
Confidence 3333444443331 1 0 100 24778889999986 77899
Q ss_pred CCCHHHHHHHHHH--hc-----------------CCHHHHHHHHHHcC--CCCHHHHHHHHHH
Q psy1686 244 PYQDEEIQAILKI--RL-----------------MQTDGLRVLTKIAL--DTSLRYAIQLITT 285 (448)
Q Consensus 244 pys~~eI~~IL~~--Ra-----------------i~deal~~La~~a~--~Gd~R~AL~lLe~ 285 (448)
+++.+++.+||.. .| ++++||..||+.|. ...+|-.-+++|.
T Consensus 300 ~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~ 362 (408)
T COG1219 300 ELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEE 362 (408)
T ss_pred hcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 9999999999973 12 89999999998862 2345544444443
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.064 Score=60.18 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=85.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE---EEEecCc-eeEeeccccCCCCC-------------CChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV---ITATNRG-VTKIRGTAYSSPHG-------------IPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~---IlaT~~~-i~lI~~Ttenp~~~-------------Ip~~lLSR~~ 238 (448)
+||.+|||+.-.+..-+++|..++|...-++- |.+|-.. -..+.| -||.|| +|++||||+=
T Consensus 384 ~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAA--aNP~~Gryd~~~~~~enI~l~~~lLSRFD 461 (682)
T COG1241 384 GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAA--ANPKFGRYDPKKTVAENINLPAPLLSRFD 461 (682)
T ss_pred CCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhh--hCCCCCcCCCCCCHHHhcCCChhHHhhCC
Confidence 48999999999999999999999998653322 1122110 011111 356654 7999999994
Q ss_pred -cccCCCCC----HHHH---------------------------------HHHHHH-h--c---CCHHHHHHHHHHc--C
Q psy1686 239 -IIPTQPYQ----DEEI---------------------------------QAILKI-R--L---MQTDGLRVLTKIA--L 272 (448)
Q Consensus 239 -ii~~~pys----~~eI---------------------------------~~IL~~-R--a---i~deal~~La~~a--~ 272 (448)
+|-+.--. ++++ +..+.+ | . ++++|.+.|.++= .
T Consensus 462 Lifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 462 LIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEM 541 (682)
T ss_pred eeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHh
Confidence 33332211 1112 111111 1 1 8999999888771 0
Q ss_pred --C-----------CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 --D-----------TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 --~-----------Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+ -.+|+.-.++..+-..|+.+-+..|+.+||.++..++
T Consensus 542 Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv 592 (682)
T COG1241 542 RKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLV 592 (682)
T ss_pred hhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 1 1477777788877777766667789999999999875
|
|
| >KOG0727|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.057 Score=54.16 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC-----------CHHHHHHHHHhhhhcCC------CeEEEEecCce
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML-----------DIECFSFLNRALESEMS------PVVITATNRGV 215 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~~~------pi~IlaT~~~i 215 (448)
.=+|+...-+. .+ -|.|+|||||+.. +.+.|-.|+..+-.-.. -.+|||||+
T Consensus 235 rmvrdvfrlak------en---apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr-- 303 (408)
T KOG0727|consen 235 RMVRDVFRLAK------EN---APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR-- 303 (408)
T ss_pred HHHHHHHHHHh------cc---CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc--
Confidence 55776554432 22 3799999999876 34666666665543221 289999998
Q ss_pred eEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----CCHHH-H-HHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 216 TKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-----MQTDG-L-RVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 216 ~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-----i~dea-l-~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
+-|-.|.. +-+.-|+|-.- |. |.+..-+..+-.-+ +++++ + +++++-- .-|.-+--.+..-|..
T Consensus 304 ----adtldpal-lrpgrldrkie--fp-lpdrrqkrlvf~titskm~ls~~vdle~~v~rpd-kis~adi~aicqeagm 374 (408)
T KOG0727|consen 304 ----ADTLDPAL-LRPGRLDRKIE--FP-LPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPD-KISGADINAICQEAGM 374 (408)
T ss_pred ----ccccCHhh-cCCcccccccc--CC-CCchhhhhhhHHhhhhcccCCcccCHHHHhcCcc-ccchhhHHHHHHHHhH
Confidence 33333333 33344566533 33 33322222111111 44432 2 3333321 1122222333444555
Q ss_pred HhhhhCCCcccHHHHHHHHHH
Q psy1686 289 VCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 289 ~a~~~~~~~It~e~V~~~~~l 309 (448)
.|-.+++-.|...|.+++|.-
T Consensus 375 ~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 375 LAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred HHHHhcceeeeHHHHHHHHHh
Confidence 555455667888888888864
|
|
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.02 Score=59.62 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=59.4
Q ss_pred cccCeEEEEeccCCCC--------------HHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCCCChhhhhh
Q psy1686 173 EIVPGVLFIDEVHMLD--------------IECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHGIPIDLLDR 236 (448)
Q Consensus 173 ~i~~~VLfIDEVH~L~--------------~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR 236 (448)
.+.|.|+|||||..+. +.+|=++---+-.... -.+..|||+ ||-+-.++++|
T Consensus 184 Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR------------P~DlDeAiiRR 251 (386)
T KOG0737|consen 184 KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR------------PFDLDEAIIRR 251 (386)
T ss_pred hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC------------CccHHHHHHHh
Confidence 3579999999998873 1223322222221111 022234444 88899999999
Q ss_pred cc-cccCCCCCHHHHHHHHHHh---c-CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHH
Q psy1686 237 MV-IIPTQPYQDEEIQAILKIR---L-MQTDG-LRVLTKIALDT-SLRYAIQLITTASVV 289 (448)
Q Consensus 237 ~~-ii~~~pys~~eI~~IL~~R---a-i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~ 289 (448)
+- .|...--+..+=++||+-- . ++++. +..+|+.. +| +.++-.++=..|+..
T Consensus 252 ~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t-~GySGSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 252 LPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMT-EGYSGSDLKELCRLAALR 310 (386)
T ss_pred CcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhc-CCCcHHHHHHHHHHHhHh
Confidence 74 4444333344445565521 1 55554 67788887 55 777777666555443
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.096 Score=55.90 Aligned_cols=65 Identities=12% Similarity=0.309 Sum_probs=54.7
Q ss_pred CCCCChhhhhhcc-cccCCCCCHHHHHHHHHH--hc-----------------CCHHHHHHHHHHc--CCCCHHHHHHHH
Q psy1686 226 PHGIPIDLLDRMV-IIPTQPYQDEEIQAILKI--RL-----------------MQTDGLRVLTKIA--LDTSLRYAIQLI 283 (448)
Q Consensus 226 ~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~--Ra-----------------i~deal~~La~~a--~~Gd~R~AL~lL 283 (448)
.|++.|.|.-|+- ++.|.+|+.+++..||.. .| ++++|++.||+.| .+..+|-.-.+|
T Consensus 422 sfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIl 501 (564)
T KOG0745|consen 422 SFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSIL 501 (564)
T ss_pred hhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHH
Confidence 5888899999996 889999999999999873 11 9999999999997 355888888899
Q ss_pred HHHHHHh
Q psy1686 284 TTASVVC 290 (448)
Q Consensus 284 e~a~~~a 290 (448)
|.+..-|
T Consensus 502 E~~Llea 508 (564)
T KOG0745|consen 502 ESLLLEA 508 (564)
T ss_pred HHHHhhh
Confidence 9887654
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.046 Score=50.89 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=56.8
Q ss_pred CeEEEEeccCCCC------HHHHHHHHHhhhhcCC--C-eEE-EEecCceeEeeccccCCCCCCChhhhhhcccccCCCC
Q psy1686 176 PGVLFIDEVHMLD------IECFSFLNRALESEMS--P-VVI-TATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~------~~~f~~Llk~lEe~~~--p-i~I-laT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py 245 (448)
+.|++|||+|++. ......|...++.... + .+| +++..+ .... ...-..++..|+..+.+.|+
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~------~~~~-~~~~~~~~~~~~~~~~l~~l 191 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDS------LMEE-FLDDKSPLFGRFSHIELKPL 191 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHH------HHHH-TT-TTSTTTT---EEEE---
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchH------HHHH-hhcccCccccccceEEEeeC
Confidence 3899999999998 4556677777776222 2 222 222211 0011 11223457788888999999
Q ss_pred CHHHHHHHHHHhc-----C--CHHHHHHHHHHcCCCCHHHHH
Q psy1686 246 QDEEIQAILKIRL-----M--QTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 246 s~~eI~~IL~~Ra-----i--~deal~~La~~a~~Gd~R~AL 280 (448)
+.++..+.++... + +++.++.+...+ +|.+++-.
T Consensus 192 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-gG~P~~l~ 232 (234)
T PF01637_consen 192 SKEEAREFLKELFKELIKLPFSDEDIEEIYSLT-GGNPRYLQ 232 (234)
T ss_dssp -HHHHHHHHHHHHHCC------HHHHHHHHHHH-TT-HHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHh-CCCHHHHh
Confidence 9999999998532 3 899999999998 99988753
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.12 Score=52.49 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=86.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhh-cccccCCCC-CHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDR-MVIIPTQPY-QDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR-~~ii~~~py-s~~eI~~ 252 (448)
+.++++++..-+..+..+.|...+++++.. ++|+.+++.. . .-++-.++... +.++.+.|. +..++..
T Consensus 65 rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~---~------~kk~~K~L~k~g~~~v~~~~~~~~~~l~~ 135 (320)
T PRK07914 65 ERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGG---R------AKALANQLRKLGAEVHPCARITKAAERAD 135 (320)
T ss_pred ceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCc---c------hhHHHHHHHHCCCEEEecCCCCCHHHHHH
Confidence 478888887666666778899999987663 6666655421 0 00122344433 358888988 9999988
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+..++ ++++|+++|+... ++|+...-+-|+....+ .++.||.++|+.+..
T Consensus 136 wi~~~a~~~g~~i~~~A~~~L~~~~-g~dl~~l~~EleKL~~~----~~~~It~e~V~~~v~ 192 (320)
T PRK07914 136 FVRKEFRSLRVKVDDDTVTALLDAV-GSDLRELASACSQLVAD----TGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-CccHHHHHHHHHHHhcC----CCCCcCHHHHHHHcC
Confidence 888777 9999999999998 89999999999865321 235799999998864
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.033 Score=47.08 Aligned_cols=66 Identities=30% Similarity=0.318 Sum_probs=41.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~p 244 (448)
+++++|||+|++.......+...+++..... ..+.++.+|.+++..+...++..+.+|| ..+.+.|
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 5899999999998888888888888753211 0112222332222222135778999999 5666543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG0482|consensus | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.11 Score=56.34 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=89.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC---eEEEEe-cCceeEeeccc-----cCCC------CCCChhhhhhcccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP---VVITAT-NRGVTKIRGTA-----YSSP------HGIPIDLLDRMVII 240 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p---i~IlaT-~~~i~lI~~Tt-----enp~------~~Ip~~lLSR~~ii 240 (448)
.||-+|||++-.+..--.++...+|...-. .=|+.| |.....++|.+ +||- -.+|.+||||+-++
T Consensus 440 ~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll 519 (721)
T KOG0482|consen 440 GGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLL 519 (721)
T ss_pred CceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhh
Confidence 389999999999888888888888864311 111111 00011222221 2221 24799999998432
Q ss_pred -------------------------------cCCCCCHHHHHHHHHHhc------CCHHHHHHHHHH-------------
Q psy1686 241 -------------------------------PTQPYQDEEIQAILKIRL------MQTDGLRVLTKI------------- 270 (448)
Q Consensus 241 -------------------------------~~~pys~~eI~~IL~~Ra------i~deal~~La~~------------- 270 (448)
.|+|++.+-|+..+. -| ++++.-++|+..
T Consensus 520 ~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~ 598 (721)
T KOG0482|consen 520 WLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKD 598 (721)
T ss_pred hhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCC
Confidence 566777777777766 22 777777777665
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 271 ALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 271 a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+-.++|..|.+|..+...|.-+=+..|+.+||.+++.+.
T Consensus 599 ~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 599 FTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred CcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 1245899999999998877765566789999999988763
|
|
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.11 Score=59.90 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=58.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC------------CeEEEEecCceeEeecc----------------------
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS------------PVVITATNRGVTKIRGT---------------------- 221 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------------pi~IlaT~~~i~lI~~T---------------------- 221 (448)
+.|+++|||.--+...|+.|+.++++.-. -+|||..|.+...|...
T Consensus 661 ~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~ 740 (898)
T KOG1051|consen 661 YSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKV 740 (898)
T ss_pred ceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhh
Confidence 48999999999999999999999999852 17777777654211111
Q ss_pred -------ccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHH
Q psy1686 222 -------AYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 222 -------tenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~ 255 (448)
-+|+ +...+.++.|+- +.-|.|++.+++.+|..
T Consensus 741 ~v~~~~~~~~~-~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~ 781 (898)
T KOG1051|consen 741 QVSDAVRIYNK-QFFRKEFLNRIDELDLNLPLDRDELIEIVN 781 (898)
T ss_pred hhhhhhhcccc-cccChHHhcccceeeeecccchhhHhhhhh
Confidence 0111 556788898875 88899999999888876
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.014 Score=66.96 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
-|+++.+||++ |+++|||+++.+ .|.+++++|+++| ..++|||..||+.
T Consensus 7 ~~~~~k~RP~~-f~dIiGqe~i~~---~Lk~~i~~~~i~h--~l~~g~~g~~~cl 55 (846)
T PRK04132 7 KPWVEKYRPQR-LDDIVGQEHIVK---RLKHYVKTGSMPH--LLFAGPPGVGKCL 55 (846)
T ss_pred ccHHHhhCCCC-HHHhcCcHHHHH---HHHHHHHcCCCCe--EEEECCCCCCccc
Confidence 37789999999 899999999975 6999999999999 7799999558864
|
|
| >KOG0651|consensus | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.08 Score=54.39 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=24.3
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 142 ALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 142 a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
++.++.-+|-..=||+--+.+ .+.+|.++|+||||-.
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA---------~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYA---------REVIPCIIFMDEIDAI 237 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHH---------hhhCceEEeehhhhhh
Confidence 345555566656666655443 2346899999999976
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.15 Score=55.66 Aligned_cols=122 Identities=26% Similarity=0.380 Sum_probs=75.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-------C-----eEEEEecCceeEeeccccCCCCCCChhhhhhccc--cc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-------P-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVI--IP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-------p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~i--i~ 241 (448)
.|-||+|||.-+....|.-|+|++||-.- | -+|-|||+.....-+. -..-.||-=|.-| +.
T Consensus 341 gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~-----G~FReDLYYRLNV~~i~ 415 (560)
T COG3829 341 GGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAE-----GTFREDLYYRLNVIPIT 415 (560)
T ss_pred CCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhc-----Ccchhhheeeeceeeec
Confidence 37899999999999999999999998641 1 4455555543111000 0001233333321 22
Q ss_pred CCCCCH--HHHHHH----HHH---hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 242 TQPYQD--EEIQAI----LKI---RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 242 ~~pys~--~eI~~I----L~~---Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
+.|+-+ +||.-+ |+. +- ++++|+..|.++.-=|+.|.-=|++|++..+.. ....|+.++.-
T Consensus 416 iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 416 IPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred CCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 333332 344322 221 11 999999999999888999999999999987653 23346655543
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.2 Score=49.71 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=25.2
Q ss_pred CeEEEEecc--CCCCHHHHHHHHHhhhhcC---CCeEE
Q psy1686 176 PGVLFIDEV--HMLDIECFSFLNRALESEM---SPVVI 208 (448)
Q Consensus 176 ~~VLfIDEV--H~L~~~~f~~Llk~lEe~~---~pi~I 208 (448)
..+|+|||+ +.++...++.|+..++..- .|++|
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptii 201 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGM 201 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 489999999 6667788888888888754 35554
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.12 Score=54.19 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=47.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC----------C--eEEEEecCceeEeeccc-cCCCCCCChhhhhhcccccC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS----------P--VVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~----------p--i~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~ii~~ 242 (448)
.++|||||++.+.++.+..|++++++.+. | .+|.++|... -++.. ..+...++.+++|||.++.|
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~--~G~~~~y~G~k~L~~AllDRFv~I~~ 258 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG--KGADHIYVARNKIDGATLDRFAPIEF 258 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc--cCcccccCCCcccCHHHHhhcEEeeC
Confidence 38999999999999999999999986431 1 3333333200 00000 11346789999999999998
Q ss_pred CCCCH
Q psy1686 243 QPYQD 247 (448)
Q Consensus 243 ~pys~ 247 (448)
...+.
T Consensus 259 dyp~~ 263 (383)
T PHA02244 259 DYDEK 263 (383)
T ss_pred CCCcH
Confidence 77663
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.053 Score=47.45 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
++++||||||++. +.+.++....+..+. .+++.+++. ..........+-.|+..+++.|++..|.
T Consensus 62 ~~~i~iDEiq~~~-~~~~~lk~l~d~~~~~~ii~tgS~~---------~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLP-DWEDALKFLVDNGPNIKIILTGSSS---------SLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhc-cHHHHHHHHHHhccCceEEEEccch---------HHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4889999999994 678888888886532 233322221 1112345567888999999999999885
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.044 Score=53.74 Aligned_cols=36 Identities=11% Similarity=-0.049 Sum_probs=32.1
Q ss_pred CCCCChhhhhhcccccCCCCCHHHHHHHHHHhcCCH
Q psy1686 226 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLMQT 261 (448)
Q Consensus 226 ~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Rai~d 261 (448)
+|.++++++|||.+|.|.+++.+++.+.|+.|.+..
T Consensus 108 yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~ 143 (226)
T PHA00729 108 FYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQ 143 (226)
T ss_pred HHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcH
Confidence 678999999999999999999999999999877433
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.09 Score=46.11 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=37.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-----eEEEEecC-----ceeEeeccccC--CCCCCChhhhhhc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-----VVITATNR-----GVTKIRGTAYS--SPHGIPIDLLDRM 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-----i~IlaT~~-----~i~lI~~Tten--p~~~Ip~~lLSR~ 237 (448)
+.++||||+|+.+.+.++.|+.++|+...- ..+-..+. +..+|++++.. .-..++++|+|||
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred eeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 589999999999999999999999975311 11100110 24444444321 2347999999997
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.53 Score=49.11 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=84.7
Q ss_pred CeEEEEeccCCCCH------------HHHHHHHHhhhhcCCC-eEEEEecCceeEeecc--c-cCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLDI------------ECFSFLNRALESEMSP-VVITATNRGVTKIRGT--A-YSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~------------~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~T--t-enp~~~Ip~~lLSR~~- 238 (448)
.||+|||||+-.-. ..|--|++.+|...-. ..=...++.|-+|++- - -.|+- +.|.|.-|+-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD-LiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD-LIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh-cChhhcCCCce
Confidence 48999999987621 2244455555543210 0000012334455443 2 34444 5588999985
Q ss_pred cccCCCCCHHHHHHHHHH---------hc----------CCHHHHHHHHHHc-------CCCCHHHHHHHHHHHHH-H--
Q psy1686 239 IIPTQPYQDEEIQAILKI---------RL----------MQTDGLRVLTKIA-------LDTSLRYAIQLITTASV-V-- 289 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~---------Ra----------i~deal~~La~~a-------~~Gd~R~AL~lLe~a~~-~-- 289 (448)
-+.+++||.+|+..||.. .| ++++|++.||++| .+=.+|..-..||.... +
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSF 409 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISF 409 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCc
Confidence 799999999999999863 11 9999999999996 23478999988887753 1
Q ss_pred -hhhhCC--CcccHHHHHHHHH
Q psy1686 290 -CRRRKA--TEICMEDIRKVYA 308 (448)
Q Consensus 290 -a~~~~~--~~It~e~V~~~~~ 308 (448)
|...++ -.|+.+.|++-++
T Consensus 410 eA~d~~g~~v~Id~~yV~~~l~ 431 (444)
T COG1220 410 EAPDMSGQKVTIDAEYVEEKLG 431 (444)
T ss_pred cCCcCCCCeEEEcHHHHHHHHH
Confidence 211222 2588888877665
|
|
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.61 Score=47.60 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=80.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh---cccccCCCCCHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR---MVIIPTQPYQDEEIQA 252 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR---~~ii~~~pys~~eI~~ 252 (448)
+.++++.+..-+.......|...++.++..++|+...+.. +.+ -++ ..++.. ..++.+.+.+..++..
T Consensus 72 ~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~------~k~--kkl-~k~~~~~k~~~~v~~~~~~~~~l~~ 142 (328)
T PRK08487 72 KNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGAD------SKT--KDI-EKLFQKKDEAVFVRFFKPNAREALE 142 (328)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCc------chh--HHH-HHHhccCCCceEEEeeCCCHHHHHH
Confidence 4678887665555666788888888765333332211110 000 000 011111 3467778899999988
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+..++ ++++|+++|+... ++|+..+-+-|+-...++ ..||.++|+.+..
T Consensus 143 ~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~ELeKL~ly~-----~~It~edV~~~v~ 198 (328)
T PRK08487 143 LLQERAKELGLDIDQNALNHLYFIH-NEDLALAANELEKLAILN-----EPITLKDIQELVF 198 (328)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh-CcHHHHHHHHHHHHHHhc-----CCCCHHHHHHHhc
Confidence 888766 9999999999998 899999999999887763 2699999999874
|
|
| >KOG0726|consensus | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.27 Score=50.40 Aligned_cols=39 Identities=36% Similarity=0.439 Sum_probs=26.0
Q ss_pred cCeEEEEeccCCCCH-----------HHHHHHHHhhh---hcCC---CeEEEEecC
Q psy1686 175 VPGVLFIDEVHMLDI-----------ECFSFLNRALE---SEMS---PVVITATNR 213 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----------~~f~~Llk~lE---e~~~---pi~IlaT~~ 213 (448)
-|.|+|||||+.... +.|--++..+. .+.+ -.+|||||+
T Consensus 278 apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr 333 (440)
T KOG0726|consen 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 333 (440)
T ss_pred CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc
Confidence 379999999998742 44544444433 2222 289999997
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.25 Score=52.23 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCCChhhhhhcccccCCCCCHHHHH-HHHHHhc-----CCHH-HHHHHHHHc
Q psy1686 226 PHGIPIDLLDRMVIIPTQPYQDEEIQ-AILKIRL-----MQTD-GLRVLTKIA 271 (448)
Q Consensus 226 ~~~Ip~~lLSR~~ii~~~pys~~eI~-~IL~~Ra-----i~de-al~~La~~a 271 (448)
|..|-.+|+.|+--=-+-||...+-+ ..|+ +. .+++ -++.|++.+
T Consensus 362 PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~-~~l~~~~~~~~~~~~~lae~~ 413 (491)
T KOG0738|consen 362 PWDIDEALRRRLEKRIYIPLPDAEARSALIK-ILLRSVELDDPVNLEDLAERS 413 (491)
T ss_pred CcchHHHHHHHHhhheeeeCCCHHHHHHHHH-HhhccccCCCCccHHHHHHHh
Confidence 67798999999851112455544433 3333 32 3333 366777775
|
|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.94 Score=46.38 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=83.1
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccc----cCCCCCHHHHH
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVII----PTQPYQDEEIQ 251 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii----~~~pys~~eI~ 251 (448)
.++.+....-++....+.|.+.+++|+.. ++|+.... .+. .-++-..+ .....+ .+.++...++.
T Consensus 71 RlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-------~d~--~kkl~K~i-~k~~~v~~~~e~~~l~e~~L~ 140 (311)
T PRK05907 71 ETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-------QEC--FSSLSKKL-SSALCLSLFGEWFADRDKRIA 140 (311)
T ss_pred EEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-------ccH--HHHHHHHH-hhcceeccccccCCCCHHHHH
Confidence 55555554455555678899999998775 44422111 111 00111222 235555 79999999998
Q ss_pred HHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 252 AILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 252 ~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+-+..++ ++++|+++++....+||+..+.+-|+-...++ ..+..||.++|+.+..
T Consensus 141 ~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~--g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 141 QLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQM--GKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhc--CCCCeECHHHHHHHhc
Confidence 8888777 99999999999874589999999999887775 2456799999999864
|
|
| >KOG0728|consensus | Back alignment and domain information |
|---|
Probab=93.06 E-value=1 Score=45.35 Aligned_cols=122 Identities=27% Similarity=0.308 Sum_probs=73.3
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhh---hhcCCC---eEEEEecCceeEeeccccCCCCCCChhhh----
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRAL---ESEMSP---VVITATNRGVTKIRGTAYSSPHGIPIDLL---- 234 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~l---Ee~~~p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lL---- 234 (448)
|.|+|.|||+.. +.+.|--.+..+ +.+... .+|||||+- --+-++||
T Consensus 241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri------------dild~allrpgr 308 (404)
T KOG0728|consen 241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI------------DILDPALLRPGR 308 (404)
T ss_pred CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc------------ccccHhhcCCCc
Confidence 799999999988 345555444433 333332 889999982 11223333
Q ss_pred -hhcccccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 235 -DRMVIIPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 235 -SR~~ii~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+| -|.|.|-+.+.=.+||++.. +... -+.-||+--.+.+.-..-..-.-|..+|..+-+..||.||.+-+..
T Consensus 309 idr--kiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~ 386 (404)
T KOG0728|consen 309 IDR--KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 386 (404)
T ss_pred ccc--cccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHH
Confidence 33 37889999888888888533 1111 1344555421223323333344567777666667899999988877
Q ss_pred Hhc
Q psy1686 309 LFL 311 (448)
Q Consensus 309 lf~ 311 (448)
..+
T Consensus 387 kvm 389 (404)
T KOG0728|consen 387 KVM 389 (404)
T ss_pred HHH
Confidence 544
|
|
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.3 Score=44.17 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=65.4
Q ss_pred CeEEEEecc----CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 176 PGVLFIDEV----HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEV----H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
+.|++|... .-+..+....|...++.++.. ++|+..++. .+.. .++...+-..+.++.+.+++..++
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~------~~~~--~k~~k~l~~~~~~~~~~~~~~~~~ 129 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEK------LDKR--KKLYKALKKQAIVIECKKPKEQEL 129 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--------HH--HHHHHHHTTTEEEEEE----TTTH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCc------hhhh--hhHHHHHhcccceEEecCCCHHHH
Confidence 378999998 446678899999999987766 333333321 1110 113355666777899999999999
Q ss_pred HHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 251 QAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 251 ~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
...++.++ ++++|+++|+... ++|++...+-|+..
T Consensus 130 ~~~i~~~~~~~g~~i~~~a~~~L~~~~-~~d~~~l~~EleKL 170 (172)
T PF06144_consen 130 PRWIKERAKKNGLKIDPDAAQYLIERV-GNDLSLLQNELEKL 170 (172)
T ss_dssp HHHHHHHHHHTT-EE-HHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh-ChHHHHHHHHHHHh
Confidence 99998777 9999999999998 99999988887754
|
7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F. |
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.7 Score=44.60 Aligned_cols=121 Identities=14% Similarity=0.210 Sum_probs=81.6
Q ss_pred eEEEEeccCCC-CHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccccCCCCCCCh--hhhhhcccccCCCCCHHHHHH
Q psy1686 177 GVLFIDEVHML-DIECFSFLNRALESEM-SPVVITATNRGVTKIRGTAYSSPHGIPI--DLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 177 ~VLfIDEVH~L-~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Ttenp~~~Ip~--~lLSR~~ii~~~pys~~eI~~ 252 (448)
.+++|.-..-. +++..-.+......+| ..++++........ ..+.-. .-+..+.++...|.+.+++.+
T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~--------~~~~~k~~~~~~~~~~~~~~~~~~~~l~~ 147 (334)
T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDK--------AKKLTKWLKKLAKAVVVECKPLDEAELPQ 147 (334)
T ss_pred eeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcch--------HHHHHHHHHHhccCceEecCCCCHHHHHH
Confidence 35555555554 3555555555555555 34444444432110 011111 112224478889999999999
Q ss_pred HHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 253 ILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 253 IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+..|+ ++++|+++|+..- +||.+.+-+-++....++ .++ .||.++|+.+...
T Consensus 148 ~i~~~~~~~~l~i~~~a~~~L~~~~-~~nl~~i~~Ei~KL~l~~--~~~-~I~~~~V~~~v~~ 206 (334)
T COG1466 148 WIKKRAKELGLKIDQEAIQLLLEAL-GGNLLAIAQEIEKLALYA--GDK-EITLEDVEEVVSD 206 (334)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh-CCcHHHHHHHHHHHHHhC--CCC-cCCHHHHHHHHhc
Confidence 998887 9999999999998 899999999999988776 344 8999999998863
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.3 Score=49.29 Aligned_cols=95 Identities=29% Similarity=0.362 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhh---cCCCeEEEEecCceeEe
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALES---EMSPVVITATNRGVTKI 218 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI 218 (448)
.-||....++.+ . .|.|+|.||++.|-+ -..|-|+--+.. .-.-.+|-|||+
T Consensus 591 rAVR~vFqRAR~------s---aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR----- 656 (802)
T KOG0733|consen 591 RAVRQVFQRARA------S---APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR----- 656 (802)
T ss_pred HHHHHHHHHhhc------C---CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC-----
Confidence 456766655522 1 489999999999932 234444443332 112244555555
Q ss_pred eccccCCCCCCChhhh-----hhcccccCCCCCHHHHHHHHHHhc------CCHHH-HHHHHHH
Q psy1686 219 RGTAYSSPHGIPIDLL-----DRMVIIPTQPYQDEEIQAILKIRL------MQTDG-LRVLTKI 270 (448)
Q Consensus 219 ~~Ttenp~~~Ip~~lL-----SR~~ii~~~pys~~eI~~IL~~Ra------i~dea-l~~La~~ 270 (448)
|-.|-+++| ++.+-+ ..-+.+|=.+||+.-. +++++ |+.|++.
T Consensus 657 -------PDiIDpAiLRPGRlDk~LyV--~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 657 -------PDIIDPAILRPGRLDKLLYV--GLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred -------CcccchhhcCCCccCceeee--cCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 555666665 344333 3344455556665321 44443 6666665
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.71 Score=49.77 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=53.5
Q ss_pred CeEEEEeccCCCCHHH-HHHHHHhhhhcC------CCeEE-------EEecCceeEeeccc--cCCCCCCChhhhhhccc
Q psy1686 176 PGVLFIDEVHMLDIEC-FSFLNRALESEM------SPVVI-------TATNRGVTKIRGTA--YSSPHGIPIDLLDRMVI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~-f~~Llk~lEe~~------~pi~I-------laT~~~i~lI~~Tt--enp~~~Ip~~lLSR~~i 239 (448)
+.||||||+.|-+.+. |.-|.-.+|... .|... +.-..++.+|++++ ..+.+.+-.+|+.|+..
T Consensus 273 ~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f 352 (459)
T PRK11331 273 KYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF 352 (459)
T ss_pred CcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe
Confidence 5899999999999764 888887787431 11110 11223445555553 34556688999999999
Q ss_pred ccCCC-CCHHHHHHHHH
Q psy1686 240 IPTQP-YQDEEIQAILK 255 (448)
Q Consensus 240 i~~~p-ys~~eI~~IL~ 255 (448)
+.++| |+..++++.+.
T Consensus 353 i~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 353 IDIEPGFDTPQFRNFLL 369 (459)
T ss_pred EEecCCCChHHHHHHHH
Confidence 88888 77666666654
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.8 Score=48.46 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=73.8
Q ss_pred CCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----------HHHHHHHHhhhhcC--CCeEE-EEecCce
Q psy1686 149 GEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----------ECFSFLNRALESEM--SPVVI-TATNRGV 215 (448)
Q Consensus 149 ~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----------~~f~~Llk~lEe~~--~pi~I-laT~~~i 215 (448)
+|=.+.+|+...++... . .|.++||||++-+-+ ..-..|++.++.-. ..+++ .+||+
T Consensus 260 gEte~~LR~~f~~a~k~-----~---~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnr-- 329 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKF-----Q---VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNR-- 329 (693)
T ss_pred cchHHHHHHHHHHHhcc-----C---CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCC--
Confidence 33348899988876422 1 289999999999953 33445566665543 23443 44444
Q ss_pred eEeeccccCCCCCCChhhhh-hcc-cccCCCCCH---HHHHHHHHHhc--CCHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q psy1686 216 TKIRGTAYSSPHGIPIDLLD-RMV-IIPTQPYQD---EEIQAILKIRL--MQTDGLRVLTKIALDT-SLRYAIQLITTAS 287 (448)
Q Consensus 216 ~lI~~Ttenp~~~Ip~~lLS-R~~-ii~~~pys~---~eI~~IL~~Ra--i~deal~~La~~a~~G-d~R~AL~lLe~a~ 287 (448)
|.+|.+++.. |+- -+..---+. -||.+++-.+. .++..+..++..+ .| -..+.-.++..|.
T Consensus 330 ----------p~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~t-hGyvGaDL~~l~~ea~ 398 (693)
T KOG0730|consen 330 ----------PDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVST-HGYVGADLAALCREAS 398 (693)
T ss_pred ----------ccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHc-cchhHHHHHHHHHHHH
Confidence 7778888773 542 122222222 23434333222 4456688888887 44 5555556666555
Q ss_pred HHhhhhCCCcccHHHHHHHH
Q psy1686 288 VVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 288 ~~a~~~~~~~It~e~V~~~~ 307 (448)
.-+..+ +.++++.+.
T Consensus 399 ~~~~r~-----~~~~~~~A~ 413 (693)
T KOG0730|consen 399 LQATRR-----TLEIFQEAL 413 (693)
T ss_pred HHHhhh-----hHHHHHHHH
Confidence 433221 455555554
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.4 Score=42.26 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=67.9
Q ss_pred CeEEEEeccCCC-CHHHHHHHHHhhhhc----CCCeEEEEecCceeEeecc-ccCCC---CCCC--------hhhhhhcc
Q psy1686 176 PGVLFIDEVHML-DIECFSFLNRALESE----MSPVVITATNRGVTKIRGT-AYSSP---HGIP--------IDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L-~~~~f~~Llk~lEe~----~~pi~IlaT~~~i~lI~~T-tenp~---~~Ip--------~~lLSR~~ 238 (448)
+-|+|+|+.-.= +...+..|-.++|.. |..++|-||...=-+|.-+ .+|.. -+|. .+|-+|+.
T Consensus 107 kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG 186 (249)
T PF05673_consen 107 KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG 186 (249)
T ss_pred CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC
Confidence 579999995422 224455555555544 3448877776544444333 22211 1111 25778985
Q ss_pred -cccCCCCCHHHHHHHHHHhc------CC-----HHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1686 239 -IIPTQPYQDEEIQAILKIRL------MQ-----TDGLRVLTKIALDTSLRYAIQLITT 285 (448)
Q Consensus 239 -ii~~~pys~~eI~~IL~~Ra------i~-----deal~~La~~a~~Gd~R~AL~lLe~ 285 (448)
.+.|.|.+.++--+|++.-+ ++ .+|+.|-...+ +-|.|.|-+....
T Consensus 187 L~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg-~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 187 LWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG-GRSGRTARQFIDD 244 (249)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 89999999999888887544 55 46666666665 5588888776553
|
|
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.5 Score=49.64 Aligned_cols=115 Identities=26% Similarity=0.311 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCC--CeEEEEecCceeEee
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMS--PVVITATNRGVTKIR 219 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~ 219 (448)
+.+|+...+|.. ..|+|||.||++.+-+ -..|-|+--++.... .++|+|.+..
T Consensus 747 q~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR----- 812 (952)
T KOG0735|consen 747 QNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR----- 812 (952)
T ss_pred HHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC-----
Confidence 678887776631 2589999999999832 456666666654432 2333332221
Q ss_pred ccccCCCCCCChhhh-----hhcccccCCCCCHH---HHHHHHHHhc-CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHH
Q psy1686 220 GTAYSSPHGIPIDLL-----DRMVIIPTQPYQDE---EIQAILKIRL-MQTDG-LRVLTKIALDT-SLRYAIQLITTASV 288 (448)
Q Consensus 220 ~Ttenp~~~Ip~~lL-----SR~~ii~~~pys~~---eI~~IL~~Ra-i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~ 288 (448)
|--|-++|| +||..-. .-+.. ||.+.|..+- +++++ ++++|... +| +.-+--.+|.-|..
T Consensus 813 ------pdliDpALLRpGRlD~~v~C~--~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T-~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 813 ------PDLIDPALLRPGRLDKLVYCP--LPDEPERLEILQVLSNSLLKDTDVDLECLAQKT-DGFTGADLQSLLYNAQL 883 (952)
T ss_pred ------ccccCHhhcCCCccceeeeCC--CCCcHHHHHHHHHHhhccCCccccchHHHhhhc-CCCchhhHHHHHHHHHH
Confidence 333445543 5552222 22222 3444444333 55554 78888887 44 55555566666655
Q ss_pred Hh
Q psy1686 289 VC 290 (448)
Q Consensus 289 ~a 290 (448)
.|
T Consensus 884 ~a 885 (952)
T KOG0735|consen 884 AA 885 (952)
T ss_pred HH
Confidence 43
|
|
| >KOG0480|consensus | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.8 Score=48.48 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=84.2
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCCe---EEEEec-CceeEeecc-----------ccCCCCCCChhhhhhcccc-
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSPV---VITATN-RGVTKIRGT-----------AYSSPHGIPIDLLDRMVII- 240 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi---~IlaT~-~~i~lI~~T-----------tenp~~~Ip~~lLSR~~ii- 240 (448)
||-+|||++-.+...+-+|..|+|...-.+ =|.||- -....|.|+ |-+-.-.+.++++||+=.|
T Consensus 444 GICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~F 523 (764)
T KOG0480|consen 444 GICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFF 523 (764)
T ss_pred ceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEE
Confidence 899999999999999999999999764210 000110 000112221 2111233678999998432
Q ss_pred cC------------------------------CCCCHHHHHHHHHH-hc----CCHHHHHHHHHH--------c------
Q psy1686 241 PT------------------------------QPYQDEEIQAILKI-RL----MQTDGLRVLTKI--------A------ 271 (448)
Q Consensus 241 ~~------------------------------~pys~~eI~~IL~~-Ra----i~deal~~La~~--------a------ 271 (448)
-+ .+|+.++++.-|.+ |. ++.+|-++|.+. +
T Consensus 524 iLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~ 603 (764)
T KOG0480|consen 524 ILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRS 603 (764)
T ss_pred EEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcc
Confidence 11 26777777776664 22 888888888776 1
Q ss_pred -CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 272 -LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 272 -~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
..=+.|..=+++..+-..|+.+....||.++|++++.+.
T Consensus 604 s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 604 SYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 011466666666665555655567789999999999863
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.46 Score=40.67 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=26.4
Q ss_pred eEEEEeccCCC-CHHHHHHHHHhhhhcCCCeEEEE
Q psy1686 177 GVLFIDEVHML-DIECFSFLNRALESEMSPVVITA 210 (448)
Q Consensus 177 ~VLfIDEVH~L-~~~~f~~Llk~lEe~~~pi~Ila 210 (448)
.+++|||+|+| +.+.+++|...+++...++++.+
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEE
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 69999999999 99999999888784444444433
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.6 Score=44.75 Aligned_cols=92 Identities=27% Similarity=0.302 Sum_probs=59.2
Q ss_pred cCeEEEEeccCCCCH------HHHHHHHHhhhhcC-CC-----eEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 175 VPGVLFIDEVHMLDI------ECFSFLNRALESEM-SP-----VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~------~~f~~Llk~lEe~~-~p-----i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.|-|||||||+.+.. +-|..|...++... .| .+|++-......+ ....+|||-| +.-+++
T Consensus 127 ~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~-~~~~~SPFNI-------g~~i~L 198 (331)
T PF14516_consen 127 KPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII-LDINQSPFNI-------GQPIEL 198 (331)
T ss_pred CCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc-cCCCCCCccc-------ccceeC
Confidence 478999999998853 23333334444322 11 3444433222222 3335677766 235788
Q ss_pred CCCCHHHHHHHHHHhc---CCHHHHHHHHHHcCCCCH
Q psy1686 243 QPYQDEEIQAILKIRL---MQTDGLRVLTKIALDTSL 276 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra---i~deal~~La~~a~~Gd~ 276 (448)
.++|.+|+.+.++ +. .+++.++.|-... +|=+
T Consensus 199 ~~Ft~~ev~~L~~-~~~~~~~~~~~~~l~~~t-gGhP 233 (331)
T PF14516_consen 199 PDFTPEEVQELAQ-RYGLEFSQEQLEQLMDWT-GGHP 233 (331)
T ss_pred CCCCHHHHHHHHH-hhhccCCHHHHHHHHHHH-CCCH
Confidence 9999999998877 44 8888899999998 8866
|
|
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=89.18 E-value=2.7 Score=43.86 Aligned_cols=97 Identities=28% Similarity=0.346 Sum_probs=62.7
Q ss_pred chhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC---------------HHHHHHHHHhhhhcCC
Q psy1686 140 FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD---------------IECFSFLNRALESEMS 204 (448)
Q Consensus 140 ~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~---------------~~~f~~Llk~lEe~~~ 204 (448)
||.-|+-. .++=..+-+.+.+..+..+.- .-+.||||..|. .-..|+|+--++.--.
T Consensus 223 FSKWFsES-----gKlV~kmF~kI~ELv~d~~~l---VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 223 FSKWFSES-----GKLVAKMFQKIQELVEDRGNL---VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR 294 (423)
T ss_pred HHHHHhhh-----hhHHHHHHHHHHHHHhCCCcE---EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc
Confidence 55655544 344455555556666554432 345599999983 2446777766665432
Q ss_pred -C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHH
Q psy1686 205 -P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 205 -p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~ 255 (448)
| ++|+||..- ...|-.++.+|.- ++..-|-+...+.+|++
T Consensus 295 ~~NvliL~TSNl-----------~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 295 YPNVLILATSNL-----------TDSIDVAFVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred CCCEEEEeccch-----------HHHHHHHhhhHhhheeecCCccHHHHHHHHH
Confidence 3 888888751 2346688999985 66667778888899988
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.82 Score=50.67 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=76.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-CCeEEEEecCceeEeeccc-------cCCCCCCChhhhhhc--ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-SPVVITATNRGVTKIRGTA-------YSSPHGIPIDLLDRM--VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-~pi~IlaT~~~i~lI~~Tt-------enp~~~Ip~~lLSR~--~ii~~~py 245 (448)
.+-||+|||-.+.-..|+.|++.++|-. .|+==-...-.|-+|.||+ ++-- .-.+|-=|. .+|.+.|+
T Consensus 408 gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~--fredLyyrL~~~~i~lP~l 485 (606)
T COG3284 408 GGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGR--FREDLYYRLNAFVITLPPL 485 (606)
T ss_pred CCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCC--chHHHHHHhcCeeeccCch
Confidence 3789999999999999999999999853 1200000011223444442 1112 234555554 36777777
Q ss_pred CHH-----HHHHHHHHhc-----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 246 QDE-----EIQAILKIRL-----MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 246 s~~-----eI~~IL~~Ra-----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
.+. .|..+++... ++++++..|..+.=-|+.|...|.|+.++..+
T Consensus 486 r~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 486 RERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred hcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 653 4566666432 99999999988877899999999999998776
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.1 Score=44.28 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=49.3
Q ss_pred cCeEEEEeccCCCCH-------H-----HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 175 VPGVLFIDEVHMLDI-------E-----CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-------~-----~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
.|.|+|||||+.|.. + --.||...+- +.-.+.|+-.+|||+. |.-+-.+++.|+--=-.
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-------VG~d~~gvLVLgATNi--Pw~LDsAIRRRFekRIY 295 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-------VGNDNDGVLVLGATNI--PWVLDSAIRRRFEKRIY 295 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-------cccCCCceEEEecCCC--chhHHHHHHHHhhccee
Confidence 589999999998821 1 1234443332 2223455566666642 55577788888741112
Q ss_pred CCCCHHHHHHHHH-Hhc------CCHHHHHHHHHHc
Q psy1686 243 QPYQDEEIQAILK-IRL------MQTDGLRVLTKIA 271 (448)
Q Consensus 243 ~pys~~eI~~IL~-~Ra------i~deal~~La~~a 271 (448)
-|+.+..-+..+- ... +++.-+..|++..
T Consensus 296 IPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kT 331 (439)
T KOG0739|consen 296 IPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKT 331 (439)
T ss_pred ccCCcHHHhhhhheeccCCCccccchhhHHHHHhhc
Confidence 3555544433322 111 7777777787775
|
|
| >cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=88.55 E-value=2.3 Score=37.62 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=49.4
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcc
Q psy1686 249 EIQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLD 312 (448)
Q Consensus 249 eI~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D 312 (448)
=+..||+.-. +++++...|.+++ -||+..+|..|..+|...+++.|+.+||+-+.+...+
T Consensus 6 ~v~~iLk~~Gv~~~~~~v~~~Lle~~----~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 6 VIAAILKSMGITEYEPRVINQLLEFA----YRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3567777312 9999999999998 4899999999999987667889999999988875443
|
The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi |
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=88.55 E-value=7.6 Score=44.31 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH----------HHH----HHHHHhhhhcCCCeEEEEecCce-eE
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI----------ECF----SFLNRALESEMSPVVITATNRGV-TK 217 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~----------~~f----~~Llk~lEe~~~pi~IlaT~~~i-~l 217 (448)
+.+.+.++.+......++ |.|+++|++|-|-. ..- .||+..+-++. +++.. .+
T Consensus 477 e~iQk~l~~vfse~~~~~-----PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-------~~~~~ia~ 544 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYA-----PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-------KRNRKIAV 544 (952)
T ss_pred HHHHHHHHHHHHHHHhhC-----CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-------ccCcEEEE
Confidence 455555555555555555 68999999999932 122 23333333322 22222 33
Q ss_pred eeccccCCCCCCChhhhhh--cc-cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q psy1686 218 IRGTAYSSPHGIPIDLLDR--MV-IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTAS 287 (448)
Q Consensus 218 I~~Ttenp~~~Ip~~lLSR--~~-ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~ 287 (448)
|+.- +....+|+.|-|- ++ ++.+.+....+=++||+.-+ +..+-|++++... +| ++++---+.++|.
T Consensus 545 Iat~--qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~T-EGy~~~DL~ifVeRai 621 (952)
T KOG0735|consen 545 IATG--QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKT-EGYLATDLVIFVERAI 621 (952)
T ss_pred EEec--hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhc-CCccchhHHHHHHHHH
Confidence 3222 1234455554443 22 77889999988888887644 4566688898888 55 9999999999997
Q ss_pred HHhh--h--hCCCcccHHHHHHHHHHhc
Q psy1686 288 VVCR--R--RKATEICMEDIRKVYALFL 311 (448)
Q Consensus 288 ~~a~--~--~~~~~It~e~V~~~~~lf~ 311 (448)
-.|. . .+.+.+|.++..+++.-|.
T Consensus 622 ~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 622 HEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 6654 1 2345799999999987554
|
|
| >KOG1968|consensus | Back alignment and domain information |
|---|
Probab=88.43 E-value=2.3 Score=49.44 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=78.9
Q ss_pred eEEEEeccCCCCH---HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 177 GVLFIDEVHMLDI---ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 177 ~VLfIDEVH~L~~---~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.|+++|||.-+.. .-+..|....+....|++..+..+ -|.-+.++..=|..++|+.-+.+.+...
T Consensus 430 ~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr------------~~p~sr~~~~~~~~l~f~kP~~~~i~~r 497 (871)
T KOG1968|consen 430 FLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDR------------NLPKSRALSRACSDLRFSKPSSELIRSR 497 (871)
T ss_pred eEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecCC------------CCccccchhhhcceeeecCCcHHHHHhh
Confidence 5889999998844 668888888887778988877776 4444445555578999999999988776
Q ss_pred HHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1686 254 LKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTAS 287 (448)
Q Consensus 254 L~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~ 287 (448)
|.--| |+++.++-+.+.+ +||+|..++.|....
T Consensus 498 i~si~~se~~ki~~~~l~~~s~~~-~~DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 498 IMSICKSEGIKISDDVLEEISKLS-GGDIRQIIMQLQFWS 536 (871)
T ss_pred hhhhhcccceecCcHHHHHHHHhc-ccCHHHHHHHHhhhh
Confidence 66434 9999999999999 999999999998763
|
|
| >COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.51 E-value=7.2 Score=39.89 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=74.6
Q ss_pred cccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcchhh--hhhhccCccccccCCCccCCCCccccCCCccc
Q psy1686 39 VSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKVKK--ISTATGREEEPDYDGWLADVTKDLRCPDGELQ 116 (448)
Q Consensus 39 ~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt~~--I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~ 116 (448)
...+++|=...|+-...++-+-+.|++ +..+|...-|||++. +.++.+..- ..+-+. ++
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~l----~~vyg~~g~gKt~a~~~y~~s~p~~~-------------l~~~~p--~~ 130 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGSL----VVVYGYAGLGKTQAAKNYAPSNPNAL-------------LIEADP--SY 130 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCce----EEEeccccchhHHHHHhhcccCccce-------------eecCCh--hh
Confidence 368889988888877888888777764 446665423776543 332222111 111000 11
Q ss_pred ceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHH
Q psy1686 117 KRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLN 196 (448)
Q Consensus 117 k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Ll 196 (448)
...++.+.++++.- .+ .. -.+++.+....... .+ ....+++||..+|....|+-|-
T Consensus 131 ------~a~~~i~~i~~~~~-------~~-~~----~~~~d~~~~~~~~l--~~----~~~~iivDEA~~L~~~ale~lr 186 (297)
T COG2842 131 ------TALVLILIICAAAF-------GA-TD----GTINDLTERLMIRL--RD----TVRLIIVDEADRLPYRALEELR 186 (297)
T ss_pred ------HHHHHHHHHHHHHh-------cc-cc----hhHHHHHHHHHHHH--cc----CcceeeeehhhccChHHHHHHH
Confidence 13567777777653 11 11 23444444443333 22 2478999999999999999999
Q ss_pred HhhhhcCCCeE
Q psy1686 197 RALESEMSPVV 207 (448)
Q Consensus 197 k~lEe~~~pi~ 207 (448)
+.++....-.+
T Consensus 187 ~i~d~~Gi~~v 197 (297)
T COG2842 187 RIHDKTGIGVV 197 (297)
T ss_pred HHHHhhCceEE
Confidence 99887554433
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.20 E-value=2.3 Score=52.58 Aligned_cols=92 Identities=21% Similarity=0.360 Sum_probs=68.2
Q ss_pred EEEEeccCCCCHHHHHHHHHhhhhcC-------------CC-eEEEEecCceeEeeccccCCCC------CCChhhhhhc
Q psy1686 178 VLFIDEVHMLDIECFSFLNRALESEM-------------SP-VVITATNRGVTKIRGTAYSSPH------GIPIDLLDRM 237 (448)
Q Consensus 178 VLfIDEVH~L~~~~f~~Llk~lEe~~-------------~p-i~IlaT~~~i~lI~~Ttenp~~------~Ip~~lLSR~ 237 (448)
-+++||.+.--.+...+|||.+.|.- .| ..++||. |||- ++..+++.|+
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ-----------Nppg~YgGRK~LSrAFRNRF 1026 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ-----------NPPGGYGGRKGLSRAFRNRF 1026 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec-----------CCCccccchHHHHHHHHhhh
Confidence 46789999999999999999999863 22 2333433 4543 3567999999
Q ss_pred ccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCC-CHHHHHH
Q psy1686 238 VIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDT-SLRYAIQ 281 (448)
Q Consensus 238 ~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~G-d~R~AL~ 281 (448)
+-+.|....++|+..||..|| |.+.-...|++.= +| +.|+.++
T Consensus 1027 lE~hFddipedEle~ILh~rc~iapSyakKiVeVy-r~Ls~rRs~~ 1071 (4600)
T COG5271 1027 LEMHFDDIPEDELEEILHGRCEIAPSYAKKIVEVY-RGLSSRRSIN 1071 (4600)
T ss_pred HhhhcccCcHHHHHHHHhccCccCHHHHHHHHHHH-HHhhhhhhHH
Confidence 999999999999999999999 7776555565553 33 5555544
|
|
| >KOG1808|consensus | Back alignment and domain information |
|---|
Probab=87.19 E-value=2.1 Score=53.01 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=54.5
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCC---C-----------eEEEEecCceeEeeccccCCCCCCChhhhhhcccccC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMS---P-----------VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPT 242 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~---p-----------i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~ 242 (448)
...|+||+|+-..+.+.+|+|++++.-. | ..++||-.--...++- -.+-.++++|+..++|
T Consensus 509 ~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr-----k~lsRa~~~rf~e~~f 583 (1856)
T KOG1808|consen 509 DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR-----KILSRALRNRFIELHF 583 (1856)
T ss_pred CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh-----hhhhhcccccchhhhh
Confidence 5788999999999999999999998421 1 1222222210001111 1234688899999999
Q ss_pred CCCCHHHHHHHHHHhc
Q psy1686 243 QPYQDEEIQAILKIRL 258 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra 258 (448)
--..++++..|+..||
T Consensus 584 ~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 584 DDIGEEELEEILEHRC 599 (1856)
T ss_pred hhcCchhhhhhhcccc
Confidence 9999999999999888
|
|
| >cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=86.93 E-value=3.8 Score=33.00 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+...|.+.++... ++++|.+.|.+++. -++.++++.|..+|..+++..|+.+||+-++..-
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e----~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIAD----DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3445566666333 99999999999983 3888999999999987788899999999887653
|
The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=6.7 Score=44.78 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=60.6
Q ss_pred CeEEEEeccCCCCHH-HHHHHHHhhhhcCC-CeEEEEecCceeEeeccccCCCCCCChhhh--hhcccccCC--CCCHHH
Q psy1686 176 PGVLFIDEVHMLDIE-CFSFLNRALESEMS-PVVITATNRGVTKIRGTAYSSPHGIPIDLL--DRMVIIPTQ--PYQDEE 249 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~-~f~~Llk~lEe~~~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lL--SR~~ii~~~--pys~~e 249 (448)
|-+|+||++|.++.. ...+|...+...+. .++|+++ +. .|+..+ ..+. .++..+... +++.+|
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s-R~---------~~~~~~-~~l~~~~~~~~l~~~~l~f~~~e 190 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS-RN---------LPPLGI-ANLRVRDQLLEIGSQQLAFDHQE 190 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe-CC---------CCCCch-HhHHhcCcceecCHHhCCCCHHH
Confidence 689999999999743 34456555655443 3555543 31 223322 1222 223344444 999999
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 250 IQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 250 I~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
..+.+..+. ++++.++.|.+.+ +|.+ .++.++-
T Consensus 191 ~~~ll~~~~~~~~~~~~~~~l~~~t-~Gwp-~~l~l~~ 226 (903)
T PRK04841 191 AQQFFDQRLSSPIEAAESSRLCDDV-EGWA-TALQLIA 226 (903)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHh-CChH-HHHHHHH
Confidence 999997554 8899999999998 8877 3444433
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=85.97 E-value=14 Score=41.07 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=53.1
Q ss_pred eEEEEeccCCC----------CHHHHHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhhhcc-----
Q psy1686 177 GVLFIDEVHML----------DIECFSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV----- 238 (448)
Q Consensus 177 ~VLfIDEVH~L----------~~~~f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~----- 238 (448)
.|+++|++.+| +.-...+|+=++-..|. -.+|++|+.. .++|.+|-
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~----------------~~vL~~m~i~~~F 663 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR----------------REVLQEMGILDCF 663 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH----------------HHHHHHcCHHHhh
Confidence 78999999998 22334444444443332 1788888763 34444442
Q ss_pred --cccCCCCCH-HHHHHHHHHhc-CCHHHHHHHHHHcC----CCCHHHHHHHHHHH
Q psy1686 239 --IIPTQPYQD-EEIQAILKIRL-MQTDGLRVLTKIAL----DTSLRYAIQLITTA 286 (448)
Q Consensus 239 --ii~~~pys~-~eI~~IL~~Ra-i~deal~~La~~a~----~Gd~R~AL~lLe~a 286 (448)
.+....++. +++.++|..-- ++|+....++.--. .-....-|.++|.|
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a 719 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMA 719 (744)
T ss_pred hheeecCccCchHHHHHHHHHccCCCcchhHHHHHHHhccccchhHHHHHHHHHHH
Confidence 455566665 67777777322 66666655554320 11355566666655
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=85.04 E-value=0.7 Score=43.08 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.9
Q ss_pred eEEEEeccCCCCH-----------HHHHHHHHhhhhcC
Q psy1686 177 GVLFIDEVHMLDI-----------ECFSFLNRALESEM 203 (448)
Q Consensus 177 ~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~ 203 (448)
+|+|+|||+-..+ ..|+.|++.+|+-.
T Consensus 70 gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~ 107 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGT 107 (171)
T ss_dssp TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSE
T ss_pred hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccc
Confidence 5999999999999 99999999999753
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.9 Score=43.92 Aligned_cols=80 Identities=19% Similarity=0.077 Sum_probs=48.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCC-----CCCCChhhhhhcccccCCCCC-H
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRMVIIPTQPYQ-D 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~~ii~~~pys-~ 247 (448)
+||+-+||+.-.+.+.++.|+.++|+-.- |-.+....-...+|..+++.. ..+.+.+|++||.++++.... .
T Consensus 237 rGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~ 316 (361)
T smart00763 237 RGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRV 316 (361)
T ss_pred CceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCH
Confidence 59999999999999999999999997531 101001111122333332211 136789999999877764333 3
Q ss_pred HHHHHHHH
Q psy1686 248 EEIQAILK 255 (448)
Q Consensus 248 ~eI~~IL~ 255 (448)
++=.+|.+
T Consensus 317 ~~E~~Iy~ 324 (361)
T smart00763 317 SEEAQIYE 324 (361)
T ss_pred HHHHHHHH
Confidence 33344444
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=4 Score=40.50 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=22.4
Q ss_pred CeEEEEeccCCCC--HHHHHHHHHhhhhcC-CCeEEEEecC
Q psy1686 176 PGVLFIDEVHMLD--IECFSFLNRALESEM-SPVVITATNR 213 (448)
Q Consensus 176 ~~VLfIDEVH~L~--~~~f~~Llk~lEe~~-~pi~IlaT~~ 213 (448)
+.+|+|||+|++. ....+.|...+.... ...+|++||.
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4899999999983 555455555543311 1235555554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=83.14 E-value=6.1 Score=47.24 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=37.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc-CCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE-MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDEEIQ 251 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~-~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~eI~ 251 (448)
+-++++|+|.. .++.+.|....+.. +...+|+.|.. ..++..+ .++.++.++.+|-.
T Consensus 297 rvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd-----------------~~vl~~~~~~~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 297 KVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKD-----------------KHFLRAHGIDHIYEVCLPSNELAL 357 (1153)
T ss_pred eEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCc-----------------HHHHHhcCCCeEEEecCCCHHHHH
Confidence 46888999864 46677766544422 12244444443 1222211 36777888888888
Q ss_pred HHHHHhc
Q psy1686 252 AILKIRL 258 (448)
Q Consensus 252 ~IL~~Ra 258 (448)
+++..+|
T Consensus 358 ~LF~~~A 364 (1153)
T PLN03210 358 EMFCRSA 364 (1153)
T ss_pred HHHHHHh
Confidence 8887666
|
syringae 6; Provisional |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=81.51 E-value=23 Score=38.64 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CeEEEEeccCCC--CHHHHHHHHH---hhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHML--DIECFSFLNR---ALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L--~~~~f~~Llk---~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI 250 (448)
++|+++-++|.| +......|.. .....+..+++++ . ...+|.+|-.=+.++.+.--+.+||
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~-------------~~~~p~el~~~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-S-------------ELNIPKELKDLITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-C-------------CCCCCHHHHhceeEEeecCcCHHHH
Confidence 589999999999 3333222222 2222111122222 2 2458888777666889999999999
Q ss_pred HHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 251 QAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 251 ~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.++|+.-+ ++++.++.|++.+ .| +.-.+-+++..+. +. .+.++.+++..++
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~-~gls~~~~~~~~~~~~--~~---~~~~~~~~~~~i~ 205 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRAC-QGLSLERIRRVLSKII--AT---YKTIDENSIPLIL 205 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCHHHHHHHHHHHH--HH---cCCCChhhHHHHH
Confidence 99987432 8999999999998 55 5555555555442 21 2247777665444
|
|
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=81.46 E-value=7.7 Score=45.23 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=41.6
Q ss_pred CeEEEEeccCCCCH--------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccc---cCCCCCCChhhhhhcccccCCC
Q psy1686 176 PGVLFIDEVHMLDI--------ECFSFLNRALESEMSPVVITATNRGVTKIRGTA---YSSPHGIPIDLLDRMVIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L~~--------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tt---enp~~~Ip~~lLSR~~ii~~~p 244 (448)
.-||||||+|.|.. +.-+.|-.++- .+++.+||+|| +.-...--|++-.|++.+.+.-
T Consensus 281 gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~-----------rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~ 349 (898)
T KOG1051|consen 281 GVILFLGELHWLVGSGSNYGAIDAANLLKPLLA-----------RGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPI 349 (898)
T ss_pred cEEEEecceeeeecCCCcchHHHHHHhhHHHHh-----------cCCeEEEecccHHHHHHHHhhCcchhhCcceeEecc
Confidence 47999999999933 33343333333 46688999997 2233344566777776555555
Q ss_pred CCHHHHHHHH
Q psy1686 245 YQDEEIQAIL 254 (448)
Q Consensus 245 ys~~eI~~IL 254 (448)
-+.++...||
T Consensus 350 pS~~~~~~iL 359 (898)
T KOG1051|consen 350 PSVENLSLIL 359 (898)
T ss_pred Ccccchhhhh
Confidence 5555544444
|
|
| >PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold | Back alignment and domain information |
|---|
Probab=81.22 E-value=2.1 Score=46.27 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=51.6
Q ss_pred HHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCC------CeEEEEecCceeEeeccccCCCCCCChhhhhhc
Q psy1686 164 TEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMS------PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237 (448)
Q Consensus 164 ~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~ 237 (448)
....+-|+.+=.+-|+|+||+|.|..++=.+|+.-+|.-.- -=+.+.| .| |.-||.++|+-+
T Consensus 244 e~LPEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvT-----------Q~-P~DiP~~VL~QL 311 (502)
T PF05872_consen 244 EQLPEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVT-----------QN-PTDIPDDVLGQL 311 (502)
T ss_pred HhCccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEe-----------CC-CCCCCHHHHHhh
Confidence 34456677774345677999999987777777777774321 1111223 33 677999999987
Q ss_pred c-cc--cCCCCCHHHHHHH
Q psy1686 238 V-II--PTQPYQDEEIQAI 253 (448)
Q Consensus 238 ~-ii--~~~pys~~eI~~I 253 (448)
. -| -++.||+.|-+.+
T Consensus 312 GnrIQHaLRAfTP~DqKav 330 (502)
T PF05872_consen 312 GNRIQHALRAFTPKDQKAV 330 (502)
T ss_pred hhHHHHHHhcCCHhHHHHH
Confidence 4 33 5788888887665
|
This family is restricted to bacterial proteins, none of which have currently been characterised. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=80.87 E-value=1.4 Score=43.90 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=16.1
Q ss_pred eEEEEeccCC--CCHHHHHHHHHhhhh
Q psy1686 177 GVLFIDEVHM--LDIECFSFLNRALES 201 (448)
Q Consensus 177 ~VLfIDEVH~--L~~~~f~~Llk~lEe 201 (448)
++|+|||++. .+...+..|...+..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~ 206 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDS 206 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 7999999954 454445555555543
|
|
| >KOG0732|consensus | Back alignment and domain information |
|---|
Probab=80.85 E-value=17 Score=43.23 Aligned_cols=102 Identities=27% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCC---CeEEEEecCc
Q psy1686 149 GEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMS---PVVITATNRG 214 (448)
Q Consensus 149 ~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~---pi~IlaT~~~ 214 (448)
+|--..+|-.-.++. +. +|-|+|.|||.=|-+ ...+-|+-.+..-.+ -++|.|||+
T Consensus 346 gEaERqlrllFeeA~-------k~--qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR- 415 (1080)
T KOG0732|consen 346 GEAERQLRLLFEEAQ-------KT--QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR- 415 (1080)
T ss_pred CcHHHHHHHHHHHHh-------cc--CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC-
Confidence 444456665555442 22 589999999996632 334555555554332 155555555
Q ss_pred eeEeeccccCCCCCCChhhhh--hc-ccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHc
Q psy1686 215 VTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIA 271 (448)
Q Consensus 215 i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a 271 (448)
+-.+-++|+- |+ ..|+|.--+.++=.+||.++- +...-+.+|++..
T Consensus 416 -----------pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 416 -----------PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEET 470 (1080)
T ss_pred -----------ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhc
Confidence 4456566633 22 256665555555567777543 8888899999986
|
|
| >PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin | Back alignment and domain information |
|---|
Probab=80.47 E-value=11 Score=29.15 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
...-++.|++... ++.|+..++++.+ -.+...+...|...|...+++.|+.+||..++
T Consensus 4 P~a~vkri~k~~~~~~~vs~ea~~~i~~a~----e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 4 PLARVKRIMKSDPDVMRVSKEAVEAIAKAA----EEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp -HHHHHHHHHHTSTTSEE-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred ChHHHHHHhccCCCccchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 3346777877542 8999999998887 35667777778777877788899999998764
|
The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A .... |
| >KOG0729|consensus | Back alignment and domain information |
|---|
Probab=80.39 E-value=7.8 Score=39.60 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=59.5
Q ss_pred CeEEEEeccCCCC-----------HHHHHHHHHhhhh--cCCC----eEEEEecCceeEe------eccccCCCCCCChh
Q psy1686 176 PGVLFIDEVHMLD-----------IECFSFLNRALES--EMSP----VVITATNRGVTKI------RGTAYSSPHGIPID 232 (448)
Q Consensus 176 ~~VLfIDEVH~L~-----------~~~f~~Llk~lEe--~~~p----i~IlaT~~~i~lI------~~Ttenp~~~Ip~~ 232 (448)
-.|+|.|||+.+. .+.|--.+..+-. -+-| .+.||||+--++= |..+-.--|++ ++
T Consensus 271 aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~l-pd 349 (435)
T KOG0729|consen 271 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PD 349 (435)
T ss_pred eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccC-Cc
Confidence 3899999999772 3455444444332 2333 7889999833221 11122223333 34
Q ss_pred hhhhcccccCCCCCHHHHHHHHHHhcCCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 233 LLDRMVIIPTQPYQDEEIQAILKIRLMQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 233 lLSR~~ii~~~pys~~eI~~IL~~Rai~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|-.|..||+...-+-. ++.+. +++|++++-+...-.--+.-.-|.++|...-++..|..|.-++.
T Consensus 350 legrt~i~kihaksms----------verdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 350 LEGRTHIFKIHAKSMS----------VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred ccccceeEEEeccccc----------cccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 4455544443322211 22222 67788886333222222333456666653334456665554443
|
|
| >KOG0478|consensus | Back alignment and domain information |
|---|
Probab=80.07 E-value=17 Score=41.29 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=25.3
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM 203 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~ 203 (448)
||-+|||++-++-...+.|+..+|...
T Consensus 528 GiCCIDEFDKM~dStrSvLhEvMEQQT 554 (804)
T KOG0478|consen 528 GICCIDEFDKMSDSTRSVLHEVMEQQT 554 (804)
T ss_pred ceEEchhhhhhhHHHHHHHHHHHHHhh
Confidence 899999999999999999999999865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 448 | ||||
| 3uk6_A | 368 | Crystal Structure Of The Tip48 (Tip49b) Hexamer Len | 1e-114 | ||
| 3uk6_A | 368 | Crystal Structure Of The Tip48 (Tip49b) Hexamer Len | 1e-19 | ||
| 2xsz_D | 378 | The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr | 1e-108 | ||
| 2xsz_D | 378 | The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr | 7e-20 | ||
| 2xsz_A | 367 | The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr | 2e-54 | ||
| 2c9o_A | 456 | 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 | 3e-48 | ||
| 2c9o_A | 456 | 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 | 2e-05 |
| >pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer Length = 368 | Back alignment and structure |
|
| >pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer Length = 368 | Back alignment and structure |
|
| >pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 378 | Back alignment and structure |
|
| >pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 378 | Back alignment and structure |
|
| >pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 367 | Back alignment and structure |
|
| >pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456 | Back alignment and structure |
|
| >pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 380 bits (976), Expect = e-130
Identities = 206/360 (57%), Positives = 262/360 (72%), Gaps = 18/360 (5%)
Query: 1 SIAAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMI 60
A KV E+R++TR+ER+GAHSHIRGLGLDD+LEPR+ SQGMVGQL ARRAAGVVL MI
Sbjct: 4 VTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMI 63
Query: 61 KEEV---VMVWPCVMCGRGKNPQKV---KKISTATGREEEPDYDGWLADVTKDLRCP--- 111
+E V G GK + + + T + + +++K
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123
Query: 112 --DGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREE 169
++ + VHTV+LHEIDVINSRT GFLALF+GDTGEI EVREQI+AKV EWREE
Sbjct: 124 RRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183
Query: 170 GKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGI 229
GKAEI+PGVLFIDEVHMLDIE FSFLNRALES+M+PV+I ATNRG+T+IRGT+Y SPHGI
Sbjct: 184 GKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGI 243
Query: 230 PIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLI 283
PIDLLDR++I+ T PY +++ + IL+IR M D VLT+I L+TSLRYAIQLI
Sbjct: 244 PIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303
Query: 284 TTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDSTVTGGAGDTKME 343
T AS+VCR+RK TE+ ++DI++VY+LFLDE RSTQY++E+Q+ ++F+ + G DT +E
Sbjct: 304 TAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFN-ELKGETMDTSLE 362
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 7e-14
Identities = 43/64 (67%), Positives = 50/64 (78%)
Query: 350 CPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREE 409
++ + VHTV+LHEIDVINSRT GFLALF+GDTGEI EVREQI+AKV EWREE
Sbjct: 124 RRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183
Query: 410 GHSE 413
G +E
Sbjct: 184 GKAE 187
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 292 bits (748), Expect = 1e-94
Identities = 102/266 (38%), Positives = 159/266 (59%), Gaps = 19/266 (7%)
Query: 77 KNPQKVKKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSR 136
N VK+ ++D + + + P G++ K+K ++ VTLH++DV N+R
Sbjct: 195 ANSGAVKRQGRCDTYAT--EFD---LEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANAR 249
Query: 137 THG-------FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI 189
G L EIT ++R +I+ V ++ ++G AE+VPGVLF+DEVHMLDI
Sbjct: 250 PQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDI 309
Query: 190 ECFSFLNRALESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPTQPYQDE 248
ECF++L+RALES ++P+VI A+NRG IRGT +SPHGIP+DLLDR++II T Y +
Sbjct: 310 ECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQ 369
Query: 249 EIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMED 302
E++ I+KIR + + L L +I T+LRY++QL+T A+++ + I E
Sbjct: 370 EMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEH 429
Query: 303 IRKVYALFLDEGRSTQYLREHQNEYM 328
+ ++ LF D S + L + Q++YM
Sbjct: 430 VEEISELFYDAKSSAKILADQQDKYM 455
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 337 AGDTKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHG-------FLALFAGDTG 389
A + +E +++V P G++ K+K ++ VTLH++DV N+R G L
Sbjct: 210 ATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKT 269
Query: 390 EITPEVREQISAKVTEWREEGHSEKNR 416
EIT ++R +I+ V ++ ++G +E
Sbjct: 270 EITDKLRGEINKVVNKYIDQGIAELVP 296
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 4e-14
Identities = 25/57 (43%), Positives = 42/57 (73%)
Query: 6 KVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE 62
K++EV+ T+ +R+ +HSH++GLGLD+S ++ + G+VGQ AR A GV++ +IK
Sbjct: 2 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKS 58
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 42/417 (10%), Positives = 110/417 (26%), Gaps = 131/417 (31%)
Query: 101 LADVTKDLRCPDGELQKRKTVVHTVTLHEIDVI------NSRTHGFLALFAGDTGEITPE 154
+ C D + + + + EID I S T E+ +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 155 VREQISAK-----VTEWREEGKAEIVPGVLFIDEVHML--DIECFS--FLNRALESEMSP 205
E++ ++ + E + + ++I++ L D + F+ ++R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-------L 134
Query: 206 VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-----IIPTQPYQDEEIQAI------- 253
+ + ++R G ++ + ++Q
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDG--------VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 254 LKIRLMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDE 313
L ++ + + + L Y Q+ + ++ + I+ E
Sbjct: 187 LNLKNCNSPETV----LEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQ-------AE 233
Query: 314 GRSTQYLREHQNEYM-----FDSTVTGGAGDTKMEVDKF-VQCPDGELQKRKTVVHTVTL 367
R + ++N + ++ + F + C K ++ T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKA----------WNAFNLSC--------KILLTTRFK 275
Query: 368 HEIDVINS--RTH--------GF-----LALFAGDTGEITPEVREQ-----------ISA 401
D +++ TH +L ++ + I+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 402 KVTE-------WREEGHSEKNRVKLTMFLRGLIEGTVTAKTLSSPN---KLLKMLFI 448
+ + W+ + + + L L P K+ L +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTI-IESSLNVL-----------EPAEYRKMFDRLSV 380
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 75/498 (15%), Positives = 145/498 (29%), Gaps = 155/498 (31%)
Query: 16 VERVGAHSHIR-GLGLDDSLEPRK--VSQGMVG------QLQARRAAGVVLGM------- 59
V R+ + +R L L P K + G++G L + V M
Sbjct: 131 VSRLQPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 60 -------IKEEVVMVW------PCVMCGRGKNPQKVKKISTATGREE------EPDY--- 97
+ + M+ R + + K+ + + E Y
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENC 246
Query: 98 -----DGWLADVTK--DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGE 150
+ A +L C K ++ T D +++ T ++L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMT- 297
Query: 151 ITPEVREQISAKVTEWREEG-KAEIV---P------GVLFIDEVHMLD----IECFSFLN 196
+TP+ + + K + R + E++ P D + D + C L
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LT 356
Query: 197 RALES---EMSPVVITATNRGVTKIRGTAYSS----PHG--IPIDLLDRMVIIPTQPYQD 247
+ES + P A R + + P IP LL +I D
Sbjct: 357 TIIESSLNVLEP----AEYRKM-------FDRLSVFPPSAHIPTILL--SLIWFDVIKSD 403
Query: 248 EE--IQAILKIRLMQTDG-----------LRVLTKIALDTSLRYAIQLITTASVVCRRRK 294
+ + K L++ L + K+ + +L S+V
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--------RSIVDHYNI 455
Query: 295 ATEICMEDIRKVYALFLDEGRSTQYLREH-------QNEYMF----------------DS 331
+D+ Y + ++ H + +F DS
Sbjct: 456 PKTFDSDDLIPPY----LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 332 T---VTGGAGDTKMEVDKF-----VQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFL-- 381
T +G +T ++ + P E + ++ + E ++I S+ L
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 382 ALFAGDTGEITPEVREQI 399
AL A + I E +Q+
Sbjct: 571 ALMA-EDEAIFEEAHKQV 587
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 448 | |||
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 100.0 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 100.0 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.94 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.86 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.85 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.82 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.82 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.81 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.8 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.79 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.79 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.78 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.75 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.72 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.72 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.72 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.72 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.66 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.63 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.6 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.57 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.55 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.53 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.52 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.51 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.51 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 99.5 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.49 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.49 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.49 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.42 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.42 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.41 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.39 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.37 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.35 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.34 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.33 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.32 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.28 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.27 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.26 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.25 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.25 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.22 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.22 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.19 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.15 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.13 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.13 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.1 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.1 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.09 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.08 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.06 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.06 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.05 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.04 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.02 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.01 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.0 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.0 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 98.99 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.99 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 98.98 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 98.97 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 98.97 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.92 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 98.92 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.9 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 98.87 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.81 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 98.8 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.79 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 98.57 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 98.35 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.33 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.24 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 98.19 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.15 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 98.14 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 98.1 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 98.06 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.98 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 97.72 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 97.69 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 97.45 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.23 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.0 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.96 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 96.79 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 96.66 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.34 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 95.43 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.98 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 93.47 | |
| 1taf_A | 68 | TFIID TBP associated factor 42; transcription init | 92.68 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.56 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 87.68 | |
| 1ku5_A | 70 | HPHA, archaeal histon; histone fold, DNA binding p | 86.88 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 84.7 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 83.41 | |
| 1tzy_D | 103 | Histone H4-VI; histone-fold, tetramer-dimer-dimer, | 81.12 | |
| 2yfw_B | 103 | Histone H4, H4; cell cycle, kinetochore, centromer | 80.87 |
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=396.18 Aligned_cols=320 Identities=40% Similarity=0.712 Sum_probs=253.9
Q ss_pred ccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh
Q psy1686 6 KVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK 84 (448)
Q Consensus 6 ~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~ 84 (448)
++.||++.++.+|+++||||+|+|+++..+|++.++++|||++++++...+.++++.|+.++.-+.++|||.+|||+ |+
T Consensus 2 ~~~~~~~~~~~~~~~~~s~i~~~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 2 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp -------CHHHHHHHTTTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred CcccccccccccchhhhhcccCCCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 56789998899999999999999999999999989999999999999999999999998874348899999669976 33
Q ss_pred -hhhhcc-------------------------------------------------------------------------
Q psy1686 85 -ISTATG------------------------------------------------------------------------- 90 (448)
Q Consensus 85 -I~~~~g------------------------------------------------------------------------- 90 (448)
+....|
T Consensus 82 ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l 161 (456)
T 2c9o_A 82 AIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGL 161 (456)
T ss_dssp HHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEE
T ss_pred HHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHH
Confidence 111111
Q ss_pred -------------------------------------Ccc--------ccccCCCccCCCCccccCCCcccceeeeeecc
Q psy1686 91 -------------------------------------REE--------EPDYDGWLADVTKDLRCPDGELQKRKTVVHTV 125 (448)
Q Consensus 91 -------------------------------------k~~--------a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~v 125 (448)
... ...||. +...|+|+|.+++.+++++.+.+
T Consensus 162 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~---~~~~~v~~p~~~~~~R~~il~~~ 238 (456)
T 2c9o_A 162 KTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL---EAEEYVPLPKGDVHKKKEIIQDV 238 (456)
T ss_dssp EETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSC---SSSSEECCCCSCSEEEEEEEEEE
T ss_pred hccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCc---ceeEecCCCchhHHHHHHHHHHH
Confidence 000 011221 11358999999999999999999
Q ss_pred chhhhhhhcccccc---chhhhcC----CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHh
Q psy1686 126 TLHEIDVINSRTHG---FLALFAG----DTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRA 198 (448)
Q Consensus 126 tLheiD~~nsr~~g---~~a~~~~----~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~ 198 (448)
++|++|.++++++| +.+++.+ .+++|+.++|+.+++...+|.++|..++.|+|+||||+|+|+.+++++|+|+
T Consensus 239 ~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~ 318 (456)
T 2c9o_A 239 TLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRA 318 (456)
T ss_dssp EHHHHHHTC-----------------------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHH
Confidence 99999999999884 5556554 5789999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCeEEEEecCceeEeeccc-cCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHc
Q psy1686 199 LESEMSPVVITATNRGVTKIRGTA-YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIA 271 (448)
Q Consensus 199 lEe~~~pi~IlaT~~~i~lI~~Tt-enp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a 271 (448)
+|+++.++||++||.++++|++|+ .++++++|++++|||++++|.||+.+++.++|+.|+ ++++++.+|+++|
T Consensus 319 lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 319 LESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG 398 (456)
T ss_dssp TTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred hhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 999999999999999999999996 778899999999999999999999999999999876 8999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy1686 272 LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYM 328 (448)
Q Consensus 272 ~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l 328 (448)
.+||+|+|+++|+.|..+|..++...|+.++|++++++|+|.++|+++|++++..|+
T Consensus 399 ~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 455 (456)
T 2c9o_A 399 TKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455 (456)
T ss_dssp HHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 679999999999999888876778899999999999999999999999998887765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=362.60 Aligned_cols=317 Identities=63% Similarity=0.995 Sum_probs=237.4
Q ss_pred cccccccccccccccccccccCccCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 3 AAAKVQEVREITRVERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
|.++++++++.++++|+++||||+||||++.++|+..++++|||++++++...+.++++.++.++..+.++|||..|||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~ 85 (368)
T 3uk6_A 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTA 85 (368)
T ss_dssp ------------------CCTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHH
T ss_pred eeeeehhccccchhhccchhhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHH
Confidence 46788899999999999999999999999999999989999999999999999999999999886678999999559976
Q ss_pred -hh-hhhhccCccccccCCCccCCCCccccCCCccc---------------------ceeeeeeccchhhhhhhcccccc
Q psy1686 83 -KK-ISTATGREEEPDYDGWLADVTKDLRCPDGELQ---------------------KRKTVVHTVTLHEIDVINSRTHG 139 (448)
Q Consensus 83 -~~-I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~---------------------k~kei~~~vtLheiD~~nsr~~g 139 (448)
++ +....+. ...|+.++++++. -+.++.+.+++|++|+.|+++.|
T Consensus 86 la~~la~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~ 153 (368)
T 3uk6_A 86 IAMGMAQALGP------------DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQG 153 (368)
T ss_dssp HHHHHHHHHCS------------SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----
T ss_pred HHHHHHHHhcc------------cCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhccccc
Confidence 54 2222220 1123322222211 11246778999999999999999
Q ss_pred chhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEee
Q psy1686 140 FLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIR 219 (448)
Q Consensus 140 ~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~ 219 (448)
+.+++.|..+++.+++|+.+..+...+...|+....|+||||||+|+|+.+.++.|++++|+++.|+++++|+.++.+|+
T Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~ 233 (368)
T 3uk6_A 154 FLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIR 233 (368)
T ss_dssp CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECB
T ss_pred chhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeee
Confidence 98999999999999999999999888888887766689999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhhh
Q psy1686 220 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALD-TSLRYAIQLITTASVVCRR 292 (448)
Q Consensus 220 ~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~-Gd~R~AL~lLe~a~~~a~~ 292 (448)
+|+.|+++.++++|+|||.++.|.||+.+++.+||+.++ ++++++++|++++ . ||+|+++++|+.|...|..
T Consensus 234 ~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~-~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 234 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG-LETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp TSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999766 9999999999999 7 9999999999999988866
Q ss_pred hCCCcccHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhc
Q psy1686 293 RKATEICMEDIRKVYALFLDEGRSTQYLREHQNEYMFDST 332 (448)
Q Consensus 293 ~~~~~It~e~V~~~~~lf~D~~~s~~~L~~~~~~~l~~~~ 332 (448)
++...|+.++|++++..|+|.+++.++++++++.|+|++.
T Consensus 313 ~~~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (368)
T 3uk6_A 313 RKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNEL 352 (368)
T ss_dssp TTCSSBCHHHHHHHHHHSBCHHHHHHHHC-----------
T ss_pred hCCCCCCHHHHHHHHHHhcCHHHHHHHHHHhhhhhhhhcC
Confidence 6778999999999999999999999999999999999987
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-27 Score=243.81 Aligned_cols=213 Identities=16% Similarity=0.216 Sum_probs=169.4
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
-||++++||++ ++++|||+|+.+....|+++|+++++++ +.++|||..|||+ +++..+. .+ ..
T Consensus 14 ~pla~r~rP~~-l~~ivGq~~~~~~~~~L~~~i~~~~~~~--vLL~GppGtGKTtlAr~ia~~-------~~------~~ 77 (447)
T 3pvs_A 14 QPLAARMRPEN-LAQYIGQQHLLAAGKPLPRAIEAGHLHS--MILWGPPGTGKTTLAEVIARY-------AN------AD 77 (447)
T ss_dssp CCHHHHTCCCS-TTTCCSCHHHHSTTSHHHHHHHHTCCCE--EEEECSTTSSHHHHHHHHHHH-------TT------CE
T ss_pred CChHHHhCCCC-HHHhCCcHHHHhchHHHHHHHHcCCCcE--EEEECCCCCcHHHHHHHHHHH-------hC------CC
Confidence 58999999998 7999999999998899999999999966 8999999558876 6644222 11 13
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+. +++...|. +++|+.+..+.... ..+ .++||||||||+
T Consensus 78 f~~------------------------------l~a~~~~~-----~~ir~~~~~a~~~~-~~~----~~~iLfIDEI~~ 117 (447)
T 3pvs_A 78 VER------------------------------ISAVTSGV-----KEIREAIERARQNR-NAG----RRTILFVDEVHR 117 (447)
T ss_dssp EEE------------------------------EETTTCCH-----HHHHHHHHHHHHHH-HTT----CCEEEEEETTTC
T ss_pred eEE------------------------------EEeccCCH-----HHHHHHHHHHHHhh-hcC----CCcEEEEeChhh
Confidence 444 22223343 78888887765433 233 369999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc--------
Q psy1686 187 LDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-------- 258 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-------- 258 (448)
|++.+|+.|++.+|+ +.+++|++||+||++.++++|+|||.++.|+|++.+++..+|+.++
T Consensus 118 l~~~~q~~LL~~le~-----------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 118 FNKSQQDAFLPHIED-----------GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp C------CCHHHHHT-----------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred hCHHHHHHHHHHHhc-----------CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999995 6678899999999999999999999999999999999999998532
Q ss_pred -----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh--CCCcccHHHHHHHHH
Q psy1686 259 -----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRR--KATEICMEDIRKVYA 308 (448)
Q Consensus 259 -----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~--~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.++++|+.+...+... +...||.++|+++++
T Consensus 187 ~~~~~i~~~al~~L~~~~-~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELV-NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp TSSEECCHHHHHHHHHHH-CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred cccCcCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 8999999999998 999999999999998876422 445799999999886
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=191.71 Aligned_cols=228 Identities=21% Similarity=0.249 Sum_probs=164.9
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
++.+..||+. ++++|||+++.+ .|.++++++++++ ...++||+..|||+ ++...+. ..+ ...+
T Consensus 5 ~l~~k~rp~~-~~~~vg~~~~~~---~L~~~l~~~~~~~-~~ll~G~~G~GKT~la~~la~~-------l~~----~~~~ 68 (373)
T 1jr3_A 5 VLARKWRPQT-FADVVGQEHVLT---ALANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKG-------LNC----ETGI 68 (373)
T ss_dssp CHHHHTCCCS-TTTSCSCHHHHH---HHHHHHHHTCCCS-EEEEESCTTSSHHHHHHHHHHH-------HSC----TTCS
T ss_pred HHHHhhCCCc-hhhccCcHHHHH---HHHHHHHhCCCCe-EEEEECCCCCCHHHHHHHHHHH-------hCC----CCCC
Confidence 5677899998 799999999975 5889999999877 34689998558876 4433221 111 1123
Q ss_pred cccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 108 LRCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 108 v~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
...|+|.|..|..+.. ..+++++|..+.. +. +++|+.+.... .....-.+.|+||||+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~~~~l~~~~~-----~~~~~~~~~vliiDe~~ 129 (373)
T 1jr3_A 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRT---------KV-----EDTRDLLDNVQ-----YAPARGRFKVYLIDEVH 129 (373)
T ss_dssp CSSCCSSSHHHHHHHTSCCSSCEEEETTCSC---------CS-----SCHHHHHHHTT-----SCCSSSSSEEEEEECGG
T ss_pred CCCCCcccHHHHHHhccCCCceEEecccccC---------CH-----HHHHHHHHHHh-----hccccCCeEEEEEECcc
Confidence 3345566555544332 3344444433211 11 56666554321 11111135899999999
Q ss_pred CCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------
Q psy1686 186 MLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------ 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------ 258 (448)
+++.+.++.|++.+|+++.+ +||++|+. +.+++++++|||.++.|.|++.+++.++|+.++
T Consensus 130 ~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 130 MLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp GSCHHHHHHHHHHHHSCCSSEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred hhcHHHHHHHHHHHhcCCCceEEEEEeCC------------hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998765 66666665 457899999999999999999999999998654
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.++++++.+..++ ...|+.++|+++.+
T Consensus 198 ~~~~a~~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 198 HEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 242 (373)
T ss_dssp BCHHHHHHHHHHS-SSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTT
T ss_pred CCHHHHHHHHHHC-CCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhC
Confidence 8999999999999 999999999999886543 34699999988764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=195.52 Aligned_cols=217 Identities=15% Similarity=0.175 Sum_probs=159.4
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
-.|+.+++||+. +++++||+++.+ .|...|++|++++ +.++||+..|||| +++.... .
T Consensus 12 ~~~~~~k~rp~~-~~~~~g~~~~~~---~L~~~i~~g~~~~--~ll~Gp~G~GKTtla~~la~~-------l-------- 70 (340)
T 1sxj_C 12 NLPWVEKYRPET-LDEVYGQNEVIT---TVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALARE-------I-------- 70 (340)
T ss_dssp CCCHHHHTCCSS-GGGCCSCHHHHH---HHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHHH-------H--------
T ss_pred CCchHHHhCCCc-HHHhcCcHHHHH---HHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHH-------H--------
Confidence 368999999998 799999999864 5899999999988 8899999558876 5533221 1
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcc-cccCeEEEEecc
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKA-EIVPGVLFIDEV 184 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~-~i~~~VLfIDEV 184 (448)
.|+.+. +.+.++++.+.+ |. +++|+.+..... .+.. .-.++|++|||+
T Consensus 71 ---~~~~~~----------~~~~~~~~~~~~---------~~-----~~ir~~i~~~~~----~~~~~~~~~~viiiDe~ 119 (340)
T 1sxj_C 71 ---YGKNYS----------NMVLELNASDDR---------GI-----DVVRNQIKDFAS----TRQIFSKGFKLIILDEA 119 (340)
T ss_dssp ---HTTSHH----------HHEEEECTTSCC---------SH-----HHHHTHHHHHHH----BCCSSSCSCEEEEETTG
T ss_pred ---cCCCcc----------ceEEEEcCcccc---------cH-----HHHHHHHHHHHh----hcccCCCCceEEEEeCC
Confidence 111110 111222222211 11 677776654321 1110 012599999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+|+.++++.|++++|+++.. .||++||. +++++++++|||.++.|.|++.+++.++|..++
T Consensus 120 ~~l~~~~~~~L~~~le~~~~~~~~il~~n~------------~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (340)
T 1sxj_C 120 DAMTNAAQNALRRVIERYTKNTRFCVLANY------------AHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL 187 (340)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEEEecC------------ccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 67777765 778999999999999999999999999888544
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.+|++.+ +||+|.|+++|+.+...+...+...|+.++|.++.+
T Consensus 188 ~i~~~~~~~i~~~s-~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 188 KLSPNAEKALIELS-NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp CBCHHHHHHHHHHH-TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 9999999999999 999999999998765433211233699999987764
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=184.79 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=140.6
Q ss_pred hHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeee--eccchhh
Q psy1686 53 AGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV--HTVTLHE 129 (448)
Q Consensus 53 ~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~--~~vtLhe 129 (448)
...|.+++++|++++ ...++|||..|||+ ++..++ ...+. ...... |+|.|..|+.+. .+.++++
T Consensus 11 ~~~l~~~i~~~~~~~-a~L~~G~~G~GKt~~a~~la~-------~l~~~--~~~~~~--~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 11 FEKLVASYQAGRGHH-ALLIQALPGMGDDALIYALSR-------YLLCQ--QPQGHK--SCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHTTCCCS-EEEEECCTTSCHHHHHHHHHH-------HHTCS--SCBTTB--CCSCSHHHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHcCCcce-eEEEECCCCchHHHHHHHHHH-------HHhCC--CCCCCC--CCCCCHHHHHHhcCCCCCEEE
Confidence 356889999999976 35689999558875 553322 22220 001123 455555555443 3566777
Q ss_pred hhhhcc-ccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eE
Q psy1686 130 IDVINS-RTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VV 207 (448)
Q Consensus 130 iD~~ns-r~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~ 207 (448)
++..+. +..|+ +++|+.++... .....| .++|++|||+|+|+.+++|+|+|++|+|+.. +|
T Consensus 79 ~~~~~~~~~~~i------------~~ir~l~~~~~-~~~~~~----~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 79 LAPEKGKNTLGV------------DAVREVTEKLN-EHARLG----GAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp ECCCTTCSSBCH------------HHHHHHHHHTT-SCCTTS----SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred EeccccCCCCCH------------HHHHHHHHHHh-hccccC----CcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 665421 11111 67887665431 111122 3699999999999999999999999998865 77
Q ss_pred EEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 208 ITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 208 IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
|++|+. +.+++++++|||++++|+|++.+++.++|+.++ +++++++.+++.+ +||+|.|+++++.+
T Consensus 142 Il~t~~------------~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s-~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 142 FLATRE------------PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLS-AGSPGAALALFQGD 208 (334)
T ss_dssp EEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHT-TTCHHHHHHTTSSH
T ss_pred EEEeCC------------hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHc-CCCHHHHHHHhccc
Confidence 777776 678999999999999999999999999999887 9999999999999 99999999999876
Q ss_pred H
Q psy1686 287 S 287 (448)
Q Consensus 287 ~ 287 (448)
.
T Consensus 209 ~ 209 (334)
T 1a5t_A 209 N 209 (334)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=185.21 Aligned_cols=207 Identities=15% Similarity=0.096 Sum_probs=143.0
Q ss_pred cCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
...++.+++||++ ++++|||+++.+ .|.+++++++++++ +.++|||..|||+ ++... +.++
T Consensus 12 ~~~~~~~k~rP~~-~~~ivg~~~~~~---~l~~~l~~~~~~~~-~L~~G~~G~GKT~la~~la-------~~l~------ 73 (324)
T 3u61_B 12 KEHILEQKYRPST-IDECILPAFDKE---TFKSITSKGKIPHI-ILHSPSPGTGKTTVAKALC-------HDVN------ 73 (324)
T ss_dssp TCSSHHHHSCCCS-TTTSCCCHHHHH---HHHHHHHTTCCCSE-EEECSSTTSSHHHHHHHHH-------HHTT------
T ss_pred ccchHHHhhCCCC-HHHHhCcHHHHH---HHHHHHHcCCCCeE-EEeeCcCCCCHHHHHHHHH-------HHhC------
Confidence 4568889999998 799999999974 58999999988873 3566767448875 44221 1111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
.+|+. +++.+ .+ .+.+|+.+..........| .++|+||||+
T Consensus 74 ~~~~~--------------------i~~~~----------~~-----~~~i~~~~~~~~~~~~~~~----~~~vliiDEi 114 (324)
T 3u61_B 74 ADMMF--------------------VNGSD----------CK-----IDFVRGPLTNFASAASFDG----RQKVIVIDEF 114 (324)
T ss_dssp EEEEE--------------------EETTT----------CC-----HHHHHTHHHHHHHBCCCSS----CEEEEEEESC
T ss_pred CCEEE--------------------Ecccc----------cC-----HHHHHHHHHHHHhhcccCC----CCeEEEEECC
Confidence 12222 22111 11 1667766655432221122 3699999999
Q ss_pred CCCC-HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHH------
Q psy1686 185 HMLD-IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI------ 256 (448)
Q Consensus 185 H~L~-~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~------ 256 (448)
|+|+ ++++++|++.+|+++.. .||++||. +.+++++++|||.++.|++++.+|..+|++.
T Consensus 115 ~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~------------~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 115 DRSGLAESQRHLRSFMEAYSSNCSIIITANN------------IDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp CCGGGHHHHHHHHHHHHHHGGGCEEEEEESS------------GGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEeCC------------ccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999998655 66666665 6689999999999999999999885444332
Q ss_pred -hc------CCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 257 -RL------MQT-DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 257 -Ra------i~d-eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+ +++ +++++|++.+ +||+|.|++.|+.+. . ...||.++|+++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~-~gd~R~a~~~L~~~~--~----~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 183 EICKHEGIAIADMKVVAALVKKN-FPDFRKTIGELDSYS--S----KGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHTCCBSCHHHHHHHHHHT-CSCTTHHHHHHHHHG--G----GTCBCC--------
T ss_pred HHHHHcCCCCCcHHHHHHHHHhC-CCCHHHHHHHHHHHh--c----cCCCCHHHHHHHhC
Confidence 22 778 9999999998 999999999999875 1 23588888887654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=177.88 Aligned_cols=220 Identities=14% Similarity=0.134 Sum_probs=143.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHH-hcCCCCCCCcccccCCCCCcch-hhhh------hhccCccccccCCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMI-KEEVVMVWPCVMCGRGKNPQKV-KKIS------TATGREEEPDYDGW 100 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI-~~~ki~gpf~~~~G~ei~GKtt-~~I~------~~~gk~~a~~~d~~ 100 (448)
+..+..||++ ++++|||+++.+ .|.+++ +.++.++ ..++||+..|||| ++.. +..|.+. ++
T Consensus 3 ~w~~kyrP~~-~~~~vg~~~~~~---~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~---~~-- 71 (354)
T 1sxj_E 3 LWVDKYRPKS-LNALSHNEELTN---FLKSLSDQPRDLPH--LLLYGPNGTGKKTRCMALLESIFGPGVYRLK---ID-- 71 (354)
T ss_dssp -CTTTTCCCS-GGGCCSCHHHHH---HHHTTTTCTTCCCC--EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cchhccCCCC-HHHhcCCHHHHH---HHHHHHhhCCCCCe--EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE---ec--
Confidence 4678899999 799999999875 478888 8888877 8899999559987 4422 2223322 00
Q ss_pred ccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHH------hCcccc
Q psy1686 101 LADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE------EGKAEI 174 (448)
Q Consensus 101 ~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~------~g~~~i 174 (448)
| ..+ ..|++.+..+..+.+. ...+++..+. +. .-...+|+.+......... .| ..-
T Consensus 72 -~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~--~~~~~~~~~i~~~~~~~~~~~~~~ls~-l~~ 133 (354)
T 1sxj_E 72 -V--RQF-VTASNRKLELNVVSSP-YHLEITPSDM----------GN--NDRIVIQELLKEVAQMEQVDFQDSKDG-LAH 133 (354)
T ss_dssp ------------------CCEECS-SEEEECCC----------------CCHHHHHHHHHHHTTTTC-------------
T ss_pred -c--eee-cccccccceeeeeccc-ceEEecHhhc----------CC--cchHHHHHHHHHHHHhccccccccccc-cCC
Confidence 0 011 1233332222222221 1112221110 11 0001466655543211100 01 011
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI 253 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~I 253 (448)
.++|++|||+|+|+.+.++.|++++|+++.. .||++|+. +..++++++|||.+++|+|++.+++.++
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~------------~~~l~~~l~sR~~~~~~~~~~~~~~~~~ 201 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS------------MSPIIAPIKSQCLLIRCPAPSDSEISTI 201 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC------------SCSSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCC------------HHHHHHHHHhhceEEecCCcCHHHHHHH
Confidence 4689999999999999999999999998655 67777776 6679999999999999999999999999
Q ss_pred HHHhc------CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 254 LKIRL------MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 254 L~~Ra------i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
|+..+ ++ +++++.|++.+ +||+|.|+++|+.+...+
T Consensus 202 l~~~~~~~~~~~~~~~~l~~i~~~~-~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 202 LSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHTHHHHTT
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 98655 78 99999999999 999999999999886543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=174.70 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=154.1
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~ 104 (448)
.+|+.+.++|++ +++++||+++.+ .|..+++.++.++ +.++|||..|||+ ++...+ .+.- ..+.
T Consensus 24 ~~~~~~k~~p~~-~~~i~g~~~~~~---~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~--~~~~------ 89 (353)
T 1sxj_D 24 QQPWVEKYRPKN-LDEVTAQDHAVT---VLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGP--DLMK------ 89 (353)
T ss_dssp --CHHHHTCCSS-TTTCCSCCTTHH---HHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHH--HHHT------
T ss_pred CccHHHhcCCCC-HHHhhCCHHHHH---HHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCC--cccc------
Confidence 368888999998 799999999875 4889999998877 8899999558876 442211 1100 0000
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHH-------HhCcccccCe
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWR-------EEGKAEIVPG 177 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~-------~~g~~~i~~~ 177 (448)
..+..+ ++... .|. +.+|+.+........ ..+...-.++
T Consensus 90 ~~~~~~--------------------~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (353)
T 1sxj_D 90 SRILEL--------------------NASDE--RGI------------SIVREKVKNFARLTVSKPSKHDLENYPCPPYK 135 (353)
T ss_dssp TSEEEE--------------------CSSSC--CCH------------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCE
T ss_pred cceEEE--------------------ccccc--cch------------HHHHHHHHHHhhhcccccchhhcccCCCCCce
Confidence 011111 11100 011 233333322111000 0000001357
Q ss_pred EEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHH
Q psy1686 178 VLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 178 VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~ 256 (448)
|+||||+|+++...++.|++++|++... .||++++. +..++++++|||..+.|.|++.+++.++|..
T Consensus 136 vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~ 203 (353)
T 1sxj_D 136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY------------VTRIIDPLASQCSKFRFKALDASNAIDRLRF 203 (353)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHHSEEEECCCCCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc------------hhhCcchhhccCceEEeCCCCHHHHHHHHHH
Confidence 9999999999999999999999998765 56666665 6679999999999999999999999999986
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCC-cccHHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKAT-EICMEDIRKVYA 308 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~-~It~e~V~~~~~ 308 (448)
++ ++++++++|++.+ +||+|.|+++|+.+..++...+.. .|+.++|+++..
T Consensus 204 ~~~~~~~~i~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 204 ISEQENVKCDDGVLERILDIS-AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHTTTCCCCHHHHHHHHHHT-SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 54 9999999999999 899999999999987765433322 699999998875
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=171.72 Aligned_cols=212 Identities=19% Similarity=0.204 Sum_probs=150.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+.+..+|+. +++++||+++.+ .|.+++++++.++ +.++||+.+|||+ ++...+. +.+ .+....
T Consensus 5 ~~~~~k~~p~~-~~~~~g~~~~~~---~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~-------l~~-~~~~~~ 70 (319)
T 2chq_A 5 EIWVEKYRPRT-LDEVVGQDEVIQ---RLKGYVERKNIPH--LLFSGPPGTGKTATAIALARD-------LFG-ENWRDN 70 (319)
T ss_dssp -CTTTTTSCSS-GGGSCSCHHHHH---HHHTTTTTTCCCC--EEEESSSSSSHHHHHHHHHHH-------HHT-TCHHHH
T ss_pred ccHHHhcCCCC-HHHHhCCHHHHH---HHHHHHhCCCCCe--EEEECcCCcCHHHHHHHHHHH-------hcC-CcccCC
Confidence 47788999998 799999999875 4888999888777 8899999558875 4422111 000 000001
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+ ++++.+.+ |. +.+|+.+..........+ -.++|+||||+|+
T Consensus 71 ~~--------------------~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~---~~~~vliiDe~~~ 113 (319)
T 2chq_A 71 FI--------------------EMNASDER---------GI-----DVVRHKIKEFARTAPIGG---APFKIIFLDEADA 113 (319)
T ss_dssp CE--------------------EEETTSTT---------CT-----TTSSHHHHHHHHSCCSSS---CCCEEEEEETGGG
T ss_pred eE--------------------EEeCcccc---------Ch-----HHHHHHHHHHHhcCCCCC---CCceEEEEeCCCc
Confidence 11 12221111 11 334444433221111111 1368999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++.++++.|++++|+++.. .||++|+. +.++++++.|||.++.|.|++.+++.++|..++ +
T Consensus 114 l~~~~~~~L~~~le~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 114 LTADAQAALRRTMEMYSKSCRFILSCNY------------VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp SCHHHHHTTGGGTSSSSSSEEEEEEESC------------GGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEeCC------------hhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999997765 56666655 567899999999999999999999999998655 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++|++.+ +||+|.+++.|+.+... ...|+.++|.++..
T Consensus 182 ~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 182 TEDGLEALIYIS-GGDFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp CHHHHHHHHHTT-TTCHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 999999999998 99999999999977532 34699999987764
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=171.97 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=152.9
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+.++.+|.. +++++||+++.+ .|.++++++++++ +.++||+..|||+ ++...+. +.+ + .
T Consensus 9 ~~~~~~~~p~~-~~~~~g~~~~~~---~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~-------l~~---~--~ 70 (323)
T 1sxj_B 9 LPWVEKYRPQV-LSDIVGNKETID---RLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHE-------LLG---R--S 70 (323)
T ss_dssp CCHHHHTCCSS-GGGCCSCTHHHH---HHHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHH-------HHG---G--G
T ss_pred CcHHHhcCCCC-HHHHHCCHHHHH---HHHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHH-------hcC---C--c
Confidence 57788899998 799999999975 4889999998877 8899999558875 4422111 100 0 0
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHH--hCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWRE--EGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~--~g~~~i~~~VLfIDEV 184 (448)
+ ...+.++|+.+.+ + .+.+|+.+......... .+ .+.|+||||+
T Consensus 71 ~----------------~~~~~~~~~~~~~---------~-----~~~i~~~~~~~~~~~~~~~~~----~~~viiiDe~ 116 (323)
T 1sxj_B 71 Y----------------ADGVLELNASDDR---------G-----IDVVRNQIKHFAQKKLHLPPG----KHKIVILDEA 116 (323)
T ss_dssp H----------------HHHEEEECTTSCC---------S-----HHHHHTHHHHHHHBCCCCCTT----CCEEEEEESG
T ss_pred c----------------cCCEEEecCcccc---------C-----hHHHHHHHHHHHhccccCCCC----CceEEEEECc
Confidence 0 0001111211111 1 15666655543211100 12 2689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+++.++++.|++++|+++.. .||++|+. +.++++++.|||.++.|.|++.+++.++|..++
T Consensus 117 ~~l~~~~~~~L~~~le~~~~~~~~il~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 117 DSMTAGAQQALRRTMELYSNSTRFAFACNQ------------SNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp GGSCHHHHHTTHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHhccCCCceEEEEeCC------------hhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999998765 56666654 667899999999999999999999999998654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++.|++.+ +||+|.|+++|+.+.... ..|+.++|.++..
T Consensus 185 ~~~~~~~~~l~~~~-~G~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 185 KYTNDGLEAIIFTA-EGDMRQAINNLQSTVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp CBCHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH-----SSBCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----CCcCHHHHHHHHC
Confidence 8999999999999 999999999999875321 3699999988765
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=168.87 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=150.9
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
..|+.++.+|.+ +++++||+++.+. |.++++++++++ +.++||+..|||+ ++..... +.+ +
T Consensus 12 ~~~~~~k~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--~ll~G~~G~GKT~la~~l~~~-------l~~---~-- 73 (327)
T 1iqp_A 12 EKPWVEKYRPQR-LDDIVGQEHIVKR---LKHYVKTGSMPH--LLFAGPPGVGKTTAALALARE-------LFG---E-- 73 (327)
T ss_dssp TSCHHHHTCCCS-TTTCCSCHHHHHH---HHHHHHHTCCCE--EEEESCTTSSHHHHHHHHHHH-------HHG---G--
T ss_pred CCchhhccCCCC-HHHhhCCHHHHHH---HHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHH-------hcC---C--
Confidence 358888999998 7999999999754 789999998877 8899999558875 4422111 100 0
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHh-CcccccCeEEEEecc
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREE-GKAEIVPGVLFIDEV 184 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~-g~~~i~~~VLfIDEV 184 (448)
.+. ..+.++++.+.+ |. +.+|+.+.......... + .++|+||||+
T Consensus 74 ~~~----------------~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~----~~~vliiDe~ 119 (327)
T 1iqp_A 74 NWR----------------HNFLELNASDER--GI------------NVIREKVKEFARTKPIGGA----SFKIIFLDEA 119 (327)
T ss_dssp GHH----------------HHEEEEETTCHH--HH------------HTTHHHHHHHHHSCCGGGC----SCEEEEEETG
T ss_pred ccc----------------CceEEeeccccC--ch------------HHHHHHHHHHHhhCCcCCC----CCeEEEEeCC
Confidence 000 001112221111 11 33444443322111111 2 3689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|+++.+.++.|++++|+++.. .||++++. +..+++++.|||.++.|.|++.+++.++|..++
T Consensus 120 ~~l~~~~~~~L~~~le~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (327)
T 1iqp_A 120 DALTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 187 (327)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CcCCHHHHHHHHHHHHhcCCCCeEEEEeCC------------ccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999997665 55555554 567899999999999999999999999998654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++++|++.+ +||+|.++++|+.+... ...|+.++|..+..
T Consensus 188 ~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 188 ELTEEGLQAILYIA-EGDMRRAINILQAAAAL-----DKKITDENVFMVAS 232 (327)
T ss_dssp EECHHHHHHHHHHH-TTCHHHHHHHHHHHHTT-----CSEECHHHHHHHTT
T ss_pred CCCHHHHHHHHHHC-CCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 9999999999999 99999999999976432 23688888877654
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=156.27 Aligned_cols=227 Identities=21% Similarity=0.262 Sum_probs=150.8
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
++.+..+|+. +++++|+++..+. |.+.++.++.++ .+.++||+..|||+ ++ +....+ . ...
T Consensus 12 ~~~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~~-~~ll~G~~G~GKT~l~~~~~~~~~--------~----~~~ 74 (250)
T 1njg_A 12 VLARKWRPQT-FADVVGQEHVLTA---LANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLN--------C----ETG 74 (250)
T ss_dssp CHHHHTCCCS-GGGCCSCHHHHHH---HHHHHHHTCCCS-EEEEECSTTSCHHHHHHHHHHHHH--------C----TTC
T ss_pred HHhhccCCcc-HHHHhCcHHHHHH---HHHHHHcCCCCe-EEEEECCCCCCHHHHHHHHHHHhc--------C----CCC
Confidence 4567788998 7999999998754 788888887654 46789998558876 33 222221 0 012
Q ss_pred ccccCCCcccceeeeeec--cchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 107 DLRCPDGELQKRKTVVHT--VTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~--vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
+...|++.+..+..+... .++..++.. . ..-.+++++.+.. . ......-.+.++||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~----~-~~~~~~~~~~vlviDe~ 135 (250)
T 1njg_A 75 ITATPCGVCDNCREIEQGRFVDLIEIDAA-------------S-RTKVEDTRDLLDN----V-QYAPARGRFKVYLIDEV 135 (250)
T ss_dssp SCSSCCSCSHHHHHHHTTCCSSEEEEETT-------------C-GGGHHHHHHHHHS----C-CCSCSSSSSEEEEEETG
T ss_pred CCCCCCcccHHHHHHhccCCcceEEecCc-------------c-cccHHHHHHHHHH----h-hhchhcCCceEEEEECc
Confidence 222333433322211110 011111110 0 0001334333221 1 11111113689999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-----
Q psy1686 185 HMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----- 258 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----- 258 (448)
|.++.+.++.|++.+++++.. .+|++|+. +..+++++++||..+.+.|++.+|+.+++..++
T Consensus 136 ~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~------------~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 136 HMLSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp GGSCHHHHHHHHHHHHSCCTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHHhcCCCceEEEEEeCC------------hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999987654 55555554 446789999999999999999999999998654
Q ss_pred -CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 259 -MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 259 -i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
+++++++.|++.+ +|++|++.++++.+...+ ...||.++|+++++
T Consensus 204 ~~~~~~~~~l~~~~-~G~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 204 AHEPRALQLLARAA-EGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 249 (250)
T ss_dssp CBCHHHHHHHHHHH-TTCHHHHHHHHHHHHTTT----TSSBCHHHHHHHSC
T ss_pred CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcc----CceecHHHHHHHhC
Confidence 8999999999999 999999999999885432 34799999998753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=145.03 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=145.5
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCcc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
.+..+|.. +++++|++..... +.+.+++++..+ +.++||+..|||+ ++ +..... ...+ ...|+
T Consensus 8 ~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~---~~~~------~~~~~ 72 (226)
T 2chg_A 8 VEKYRPRT-LDEVVGQDEVIQR---LKGYVERKNIPH--LLFSGPPGTGKTATAIALARDLF---GENW------RDNFI 72 (226)
T ss_dssp HHHTSCSS-GGGCCSCHHHHHH---HHHHHHTTCCCC--EEEECSTTSSHHHHHHHHHHHHH---GGGG------GGGEE
T ss_pred HHhcCCCC-HHHHcCcHHHHHH---HHHHHhCCCCCe--EEEECCCCCCHHHHHHHHHHHHh---cccc------ccceE
Confidence 45578887 7999999988754 788888876655 8899998558875 33 221111 0000 01222
Q ss_pred ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 109 RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 109 ~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
.+ +..+.. + .+.+++.+....... ....-.+.|+||||+|.++
T Consensus 73 ~~--------------------~~~~~~---------~-----~~~~~~~~~~~~~~~---~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 73 EM--------------------NASDER---------G-----IDVVRHKIKEFARTA---PIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp EE--------------------ETTCTT---------C-----HHHHHHHHHHHHTSC---CSTTCSCEEEEEETGGGSC
T ss_pred Ee--------------------cccccc---------C-----hHHHHHHHHHHhccc---CCCccCceEEEEeChhhcC
Confidence 21 111100 1 134444443321110 0001136899999999999
Q ss_pred HHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCH
Q psy1686 189 IECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQT 261 (448)
Q Consensus 189 ~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~d 261 (448)
.+.++.|++.++++... .+|++|+. +..+.+++++||..+.|.|++.+++.+++..++ +++
T Consensus 116 ~~~~~~l~~~l~~~~~~~~~i~~~~~------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (226)
T 2chg_A 116 ADAQAALRRTMEMYSKSCRFILSCNY------------VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (226)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCC------------hhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999987655 45555554 456789999999999999999999999998655 899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 262 DGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 262 eal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++.|++.+ +|++|.++++|+.+...+ ..|+.++|+++++
T Consensus 184 ~~~~~l~~~~-~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 184 DGLEALIYIS-GGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9999999999 999999999999886543 5799999999875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=158.63 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=148.4
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcC----CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCC
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEE----VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~----ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~ 104 (448)
+.+.++|++ ++.++||+++.+. +...|+.+ +.. +.+.++||+..|||| +++..+. .++
T Consensus 15 ~~~~lr~~~-l~~~~g~~~~~~~---l~~~i~~~~~~~~~~-~~~ll~Gp~G~GKTTLa~~ia~~-------l~~----- 77 (334)
T 1in4_A 15 GVQFLRPKS-LDEFIGQENVKKK---LSLALEAAKMRGEVL-DHVLLAGPPGLGKTTLAHIIASE-------LQT----- 77 (334)
T ss_dssp --CTTSCSS-GGGCCSCHHHHHH---HHHHHHHHHHHTCCC-CCEEEESSTTSSHHHHHHHHHHH-------HTC-----
T ss_pred HHHHcCCcc-HHHccCcHHHHHH---HHHHHHHHHhcCCCC-CeEEEECCCCCcHHHHHHHHHHH-------hCC-----
Confidence 457799998 7999999998776 44444443 221 348899999559987 6655221 111
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
++.+. .|++. +-..+++.... . .. .++|+||||+
T Consensus 78 -~~~~~-sg~~~---------------------------------~~~~~l~~~~~----~---~~----~~~v~~iDE~ 111 (334)
T 1in4_A 78 -NIHVT-SGPVL---------------------------------VKQGDMAAILT----S---LE----RGDVLFIDEI 111 (334)
T ss_dssp -CEEEE-ETTTC---------------------------------CSHHHHHHHHH----H---CC----TTCEEEEETG
T ss_pred -CEEEE-echHh---------------------------------cCHHHHHHHHH----H---cc----CCCEEEEcch
Confidence 12110 11110 00123332211 1 11 2479999999
Q ss_pred CCCCHHHHHHHHHhhhhcCCCeEEEEe---------cCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHH
Q psy1686 185 HMLDIECFSFLNRALESEMSPVVITAT---------NRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAIL 254 (448)
Q Consensus 185 H~L~~~~f~~Llk~lEe~~~pi~IlaT---------~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL 254 (448)
|+|....++.|+.++|+....+++... -..+.++++|+. ++.++.+++|||. .+.|.||+.+++.++|
T Consensus 112 ~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~--~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL 189 (334)
T 1in4_A 112 HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEII 189 (334)
T ss_dssp GGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESC--GGGSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC--cccCCHHHHHhcCceeeCCCCCHHHHHHHH
Confidence 999999999999998876433222110 012456665543 4679999999996 7899999999999999
Q ss_pred HHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 255 KIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 255 ~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+.++ ++++++.+|++.+ +||+|.|+++|+++..+|...+...||.+++++++...
T Consensus 190 ~~~~~~~~~~~~~~~~~~ia~~~-~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 190 KRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8655 8999999999999 99999999999999888866667789999999999864
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-18 Score=168.31 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=123.4
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhh-ccCccccccCCCccCCCCccccCCCcccceeeee
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTA-TGREEEPDYDGWLADVTKDLRCPDGELQKRKTVV 122 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~-~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~ 122 (448)
||+++. ..|.++|++|+ +|...++|||..|||+ +++.+. +|. |+.
T Consensus 1 g~~~~~---~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~------------------~~~---------- 47 (305)
T 2gno_A 1 GAKDQL---ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEK------------------FPP---------- 47 (305)
T ss_dssp ---CHH---HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHT------------------SCC----------
T ss_pred ChHHHH---HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCch------------------hhc----------
Confidence 788886 45999999999 4558899999558865 543322 221 110
Q ss_pred eccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhc
Q psy1686 123 HTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESE 202 (448)
Q Consensus 123 ~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~ 202 (448)
.+.+++++|... ...|+ +++|+.++.+. .....| .++|+||||+|+|+.+++|+|+|++|+|
T Consensus 48 ~~~d~~~l~~~~-~~~~i------------d~ir~li~~~~-~~p~~~----~~kvviIdead~lt~~a~naLLk~LEep 109 (305)
T 2gno_A 48 KASDVLEIDPEG-ENIGI------------DDIRTIKDFLN-YSPELY----TRKYVIVHDCERMTQQAANAFLKALEEP 109 (305)
T ss_dssp CTTTEEEECCSS-SCBCH------------HHHHHHHHHHT-SCCSSS----SSEEEEETTGGGBCHHHHHHTHHHHHSC
T ss_pred cCCCEEEEcCCc-CCCCH------------HHHHHHHHHHh-hccccC----CceEEEeccHHHhCHHHHHHHHHHHhCC
Confidence 223344444321 01112 78998776542 222223 3599999999999999999999999998
Q ss_pred CCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHHHH
Q psy1686 203 MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRYAI 280 (448)
Q Consensus 203 ~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~AL 280 (448)
+.. +||++|+. +.+++++++|| +|+|+|++.+++.+.|+.++ ++++++ +.+ .||+|.|+
T Consensus 110 ~~~t~fIl~t~~------------~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~~i~~~~~----~~~-~g~~~~al 170 (305)
T 2gno_A 110 PEYAVIVLNTRR------------WHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKIGDLWEEL----PLL-ERDFKTAL 170 (305)
T ss_dssp CTTEEEEEEESC------------GGGSCHHHHTT--SEEEECCCCHHHHHHHHHHHTTHHHHC----GGG-GTCHHHHH
T ss_pred CCCeEEEEEECC------------hHhChHHHHce--eEeCCCCCHHHHHHHHHHHhCCCHHHH----HHH-CCCHHHHH
Confidence 876 88888876 67899999999 99999999999999999776 888887 345 89999999
Q ss_pred HHHHH
Q psy1686 281 QLITT 285 (448)
Q Consensus 281 ~lLe~ 285 (448)
++|..
T Consensus 171 ~~l~~ 175 (305)
T 2gno_A 171 EAYKL 175 (305)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=157.31 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=144.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
.+.+.++|.+ ++++|||+++.++..-.....+...-..+.+.++||+..|||+ ++... +..+ ..|
T Consensus 18 ~~~~~~~p~~-~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia-------~~~~------~~~ 83 (338)
T 3pfi_A 18 TYETSLRPSN-FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS-------YEMS------ANI 83 (338)
T ss_dssp -----CCCCS-GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHH-------HHTT------CCE
T ss_pred hhhhccCCCC-HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHH-------HHhC------CCe
Confidence 4678899998 8999999999887544444443222222348899998558875 54221 1111 133
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
+.+.+.. ..+ ..+++..+.. .+ .+++|||||||.+
T Consensus 84 ~~~~~~~-----------------------------~~~-----~~~~~~~~~~-------~~----~~~vl~lDEi~~l 118 (338)
T 3pfi_A 84 KTTAAPM-----------------------------IEK-----SGDLAAILTN-------LS----EGDILFIDEIHRL 118 (338)
T ss_dssp EEEEGGG-----------------------------CCS-----HHHHHHHHHT-------CC----TTCEEEEETGGGC
T ss_pred EEecchh-----------------------------ccc-----hhHHHHHHHh-------cc----CCCEEEEechhhc
Confidence 3310000 000 0233322211 11 3589999999999
Q ss_pred CHHHHHHHHHhhhhcCCCeEEEE---------ecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHHHHHHHHh
Q psy1686 188 DIECFSFLNRALESEMSPVVITA---------TNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIR 257 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~pi~Ila---------T~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~R 257 (448)
..+.++.|++.+|+.....+... ....+.+|++|+.. ..++++|++|| .++.|.+++.+++..+++..
T Consensus 119 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~--~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 119 SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA--GMLSNPLRDRFGMQFRLEFYKDSELALILQKA 196 (338)
T ss_dssp CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG--GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc--cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHH
Confidence 99999999999998643221100 00023455555433 34789999999 79999999999999999865
Q ss_pred c------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 258 L------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 258 a------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
+ +++++++.|++.+ .|++|.+.++++.+...+...+...|+.+++..++..
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 197 ALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 5 8999999999977 9999999999999987775556678999999988764
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=146.39 Aligned_cols=215 Identities=19% Similarity=0.183 Sum_probs=141.2
Q ss_pred CCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCCCCcc
Q psy1686 31 DDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 31 ~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
+++++|.+ ++++|||+++.+...-.........-..+.+.++||+..|||+ ++ |....| .+|+
T Consensus 3 ~~~~~p~~-~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--------------~~~~ 67 (324)
T 1hqc_A 3 DLALRPKT-LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--------------VNLR 67 (324)
T ss_dssp --CCCCCS-TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--------------CCEE
T ss_pred ccccCccc-HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--------------CCEE
Confidence 35789998 7999999998776433333333211122347899998558875 44 322222 1222
Q ss_pred --ccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 109 --RCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 109 --~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
.|+.-. . ..++...+.. . .+ .++++||||||.
T Consensus 68 ~~~~~~~~-------------------------------~-----~~~l~~~l~~----~--~~----~~~~l~lDEi~~ 101 (324)
T 1hqc_A 68 VTSGPAIE-------------------------------K-----PGDLAAILAN----S--LE----EGDILFIDEIHR 101 (324)
T ss_dssp EECTTTCC-------------------------------S-----HHHHHHHHTT----T--CC----TTCEEEETTTTS
T ss_pred EEeccccC-------------------------------C-----hHHHHHHHHH----h--cc----CCCEEEEECCcc
Confidence 221110 0 0233222211 0 11 358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCCe---------EEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHHHHHHHH
Q psy1686 187 LDIECFSFLNRALESEMSPV---------VITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKI 256 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~pi---------~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~ 256 (448)
++...++.|++.+++..... .+-.....+.+|++|+. +..+.++|++|| .++.+.+++.+|+..+++.
T Consensus 102 l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~--~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~ 179 (324)
T 1hqc_A 102 LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR--PGLITAPLLSRFGIVEHLEYYTPEELAQGVMR 179 (324)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC--CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC--cccCCHHHHhcccEEEecCCCCHHHHHHHHHH
Confidence 99999999999999853100 00001112334444433 345788999999 6999999999999999986
Q ss_pred hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 257 RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 257 Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.+ +++++++.|++.+ .|++|.+.++++.+...+...+...|+.+++..+...
T Consensus 180 ~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 180 DARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp HHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 54 8999999999998 9999999999999876664445667999999887654
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=157.97 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=98.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhhc---CCCeEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCCHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALESE---MSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQDEE 249 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe~---~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys~~e 249 (448)
.+.|+||||+|+|. .+++|+..++-+ .+.++ ++.|+.|+++|.+.+++.++||| .+|.|+||+.+|
T Consensus 132 ~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~-------vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 132 RKTLILIQNPENLL--SEKILQYFEKWISSKNSKLS-------IICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp CEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEE-------EEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred CceEEEEecHHHhh--cchHHHHHHhcccccCCcEE-------EEEEecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 35899999999998 677777776522 12221 12334456788777888999998 579999999999
Q ss_pred HHHHHHHhc-------C----------------------------------CHHHHHHHHHH--cCCCCHHHHHHHHHHH
Q psy1686 250 IQAILKIRL-------M----------------------------------QTDGLRVLTKI--ALDTSLRYAIQLITTA 286 (448)
Q Consensus 250 I~~IL~~Ra-------i----------------------------------~deal~~La~~--a~~Gd~R~AL~lLe~a 286 (448)
+.+||+.|. + +++|++++|+. +.+||+|.||++|++|
T Consensus 203 l~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A 282 (318)
T 3te6_A 203 LQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAA 282 (318)
T ss_dssp HHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 999999876 1 78999999995 2389999999999999
Q ss_pred HHHhhhh---------CCCcccHHHHHHHHHHh
Q psy1686 287 SVVCRRR---------KATEICMEDIRKVYALF 310 (448)
Q Consensus 287 ~~~a~~~---------~~~~It~e~V~~~~~lf 310 (448)
...|+.+ +...||.+.++++++-+
T Consensus 283 ~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 283 VEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp HHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 9988642 23468888888887654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=147.68 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=108.6
Q ss_pred CeEEEEeccCCCCHH--HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC-CCCCChhhhhhc--ccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDIE--CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS-PHGIPIDLLDRM--VIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~--~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~--~ii~~~pys~~eI 250 (448)
+.|+||||+|++... .++.|+..++....... +..+.+|++|+..| ...+.+.+++|| ..+.|.||+.+++
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~----~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD----RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQL 206 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC---------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHH
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhchhhcCC----CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHH
Confidence 579999999999776 67777766653311000 11223333333332 256889999999 6899999999999
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-c-hhHHH
Q psy1686 251 QAILKIRL--------MQTDGLRVLTKIALD---TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-D-EGRST 317 (448)
Q Consensus 251 ~~IL~~Ra--------i~deal~~La~~a~~---Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D-~~~s~ 317 (448)
.++++.++ +++++++++++.+ . |++|+|+++++.|...|...+...|+.+++++++.... + ...++
T Consensus 207 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~ 285 (387)
T 2v1u_A 207 RDILETRAEEAFNPGVLDPDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVV 285 (387)
T ss_dssp HHHHHHHHHHHBCTTTBCSSHHHHHHHHH-HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHH
Confidence 99998653 8899999999998 6 99999999999998887655667899999999987432 2 23445
Q ss_pred HHHHHHHhhhhhh
Q psy1686 318 QYLREHQNEYMFD 330 (448)
Q Consensus 318 ~~L~~~~~~~l~~ 330 (448)
+.+..++..++..
T Consensus 286 ~~l~~~~~~~l~a 298 (387)
T 2v1u_A 286 RTLPLHAKLVLLS 298 (387)
T ss_dssp HSSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 5566666666553
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=141.05 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=96.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC---C--eEEEEecCceeEeeccccCCCCCCChhhhhhccc-ccCCCCCHH-
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS---P--VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVI-IPTQPYQDE- 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~---p--i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~i-i~~~pys~~- 248 (448)
++||||||+|+++.+.++.|++++|+... . .. ..-...+.+|++|+. ....++++|+|||.+ +.+.+++..
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li~~~n~-~~~~l~~~L~~R~~~~~~l~~~~~~~ 222 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLS-IRHPARFVLVGSGNP-EEGDLRPQLLDRFGLSVEVLSPRDVE 222 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCC-EEEECCEEEEEEECS-CSCCCCHHHHTTCSEEEECCCCCSHH
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceE-EeeCCceEEEEEeCC-CCCCCCHHHHhhcceEEEcCCCCcHH
Confidence 58999999999999999999999997310 0 00 000112334444432 134689999999975 999999544
Q ss_pred HHHHHHHH-----------------------------hc------CCHHHHHHHHHHcCCC----CHHHHHHHHHHHHHH
Q psy1686 249 EIQAILKI-----------------------------RL------MQTDGLRVLTKIALDT----SLRYAIQLITTASVV 289 (448)
Q Consensus 249 eI~~IL~~-----------------------------Ra------i~deal~~La~~a~~G----d~R~AL~lLe~a~~~ 289 (448)
+-.+|++. ++ ++++++++|++++ .+ ++|.++++++.|...
T Consensus 223 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~-~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 223 TRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC-IALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH-HHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHhCCCCccHHHHHHHHHHHH
Confidence 33366543 11 9999999999997 44 899999999999888
Q ss_pred hhhhCCCcccHHHHHHHHHHh
Q psy1686 290 CRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 290 a~~~~~~~It~e~V~~~~~lf 310 (448)
|..++...|+.++|++++...
T Consensus 302 A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 302 AALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHcCCCcCCHHHHHHHHHHH
Confidence 765677789999999998754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=135.72 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=113.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC----C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS----P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~----p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~ 248 (448)
+.|+||||+|.++.+.++.|.+.+++... + .+|++++.. .....+.+.+++||. .+.|.||+.+
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~---------~~~~~l~~~~~~r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND---------AVLNNLDPSTRGIMGKYVIRFSPYTKD 196 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST---------HHHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc---------hHHHHhCHHhhhcCCCceEEeCCCCHH
Confidence 57999999999999999999999987542 3 444555541 001236788999997 6999999999
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-
Q psy1686 249 EIQAILKIRL--------MQTDGLRVLTKIAL--------DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL- 311 (448)
Q Consensus 249 eI~~IL~~Ra--------i~deal~~La~~a~--------~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~- 311 (448)
++.+++..++ +++++++.|++.+. .|++|+++++++.|...|..++...|+.++|.++.....
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 9999998654 89999999999974 699999999999998887666677899999999887543
Q ss_pred -chhHHHHHHHHHHhhhhh
Q psy1686 312 -DEGRSTQYLREHQNEYMF 329 (448)
Q Consensus 312 -D~~~s~~~L~~~~~~~l~ 329 (448)
.....++.|..++..+|.
T Consensus 277 ~~~~~~l~~l~~~~~~~L~ 295 (389)
T 1fnn_A 277 GISEEVLIGLPLHEKLFLL 295 (389)
T ss_dssp CCCHHHHHHSCHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHH
Confidence 235556666666666654
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=130.05 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=138.9
Q ss_pred cCCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccC
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~ 103 (448)
+.++++..++|...+++++|......+...+.+++..++ ++.+.++||+..|||+ ++ +....+ ...+
T Consensus 13 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~------ 81 (242)
T 3bos_A 13 LQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDG--VQAIYLWGPVKSGRTHLIHAACARAN---ELER------ 81 (242)
T ss_dssp CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCS--CSEEEEECSTTSSHHHHHHHHHHHHH---HTTC------
T ss_pred hhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHH---HcCC------
Confidence 457888999996679999983322334456777777653 3458899998558876 33 221111 0000
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
...|+.| .++. + . + ..- +. .+ + .++++||||
T Consensus 82 ~~~~~~~-----------------~~~~--~-~---~-----------~~~----~~----~~---~----~~~vliiDe 112 (242)
T 3bos_A 82 RSFYIPL-----------------GIHA--S-I---S-----------TAL----LE----GL---E----QFDLICIDD 112 (242)
T ss_dssp CEEEEEG-----------------GGGG--G-S---C-----------GGG----GT----TG---G----GSSEEEEET
T ss_pred eEEEEEH-----------------HHHH--H-H---H-----------HHH----HH----hc---c----CCCEEEEec
Confidence 0112221 1100 0 0 0 000 00 00 1 258999999
Q ss_pred cCCCCHHH--HHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCHHHHHHHHH
Q psy1686 184 VHMLDIEC--FSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 184 VH~L~~~~--f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~~eI~~IL~ 255 (448)
+|.+.... ++.|+..++.... +.+|++++.. ......+.+++.+|| .++.|.|++.+++.+++.
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~--------~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS--------PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC--------TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC--------HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 99997766 7778887765431 2355555531 000113458999999 899999999999999998
Q ss_pred Hhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 256 IRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 256 ~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.++ ++++++++|++.+ .||+|.+.++|+.+..+|...+ ..||.++|+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 185 RRAAMRGLQLPEDVGRFLLNRM-ARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 654 8999999999998 9999999999999988774333 5699999998764
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-14 Score=140.02 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=102.8
Q ss_pred eEEEEeccCCCCHHH-HHH-HHHhhhhcCCC-eEEEEecCceeEeeccccCC-CCCCChhhhhhc-ccccCCCCCHHHHH
Q psy1686 177 GVLFIDEVHMLDIEC-FSF-LNRALESEMSP-VVITATNRGVTKIRGTAYSS-PHGIPIDLLDRM-VIIPTQPYQDEEIQ 251 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~-f~~-Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~-~ii~~~pys~~eI~ 251 (448)
.|+||||+|.+.... ++. |....+.. .+ .+|++|+. .| ...+.+++++|+ ..+.|.||+.+++.
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~----------~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~ 203 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND----------INVRDYMEPRVLSSLGPSVIFKPYDAEQLK 203 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS----------TTTTTTSCHHHHHTCCCEEEECCCCHHHHH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC----------CchHhhhCHHHHhcCCCeEEECCCCHHHHH
Confidence 499999999997653 555 55555543 22 33333332 22 256889999994 79999999999999
Q ss_pred HHHHHhc--------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc-c-hhHHHH
Q psy1686 252 AILKIRL--------MQTDGLRVLTKIALD---TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL-D-EGRSTQ 318 (448)
Q Consensus 252 ~IL~~Ra--------i~deal~~La~~a~~---Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~-D-~~~s~~ 318 (448)
++++.++ +++++++.+++.+ . ||+|+|+++++.|...|. +...|+.++|++++.... + ...+++
T Consensus 204 ~il~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~~~~~~~ 280 (384)
T 2qby_B 204 FILSKYAEYGLIKGTYDDEILSYIAAIS-AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQERLIEAVK 280 (384)
T ss_dssp HHHHHHHHHTSCTTSCCSHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcCHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcchHHHHHH
Confidence 9998752 8899999999998 6 999999999999988874 556899999999987532 1 234445
Q ss_pred HHHHHHhhhhhh
Q psy1686 319 YLREHQNEYMFD 330 (448)
Q Consensus 319 ~L~~~~~~~l~~ 330 (448)
.|..++..++..
T Consensus 281 ~l~~~~~~~l~a 292 (384)
T 2qby_B 281 ALPFHYKLALRS 292 (384)
T ss_dssp SSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 555556655553
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=150.84 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred cCeEEEEeccCCCCHHH---HHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIEC---FSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~---f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.||||||||.|.... ++.|++.+++...|+++++++ +.. ..+ +++.+||..+.|.+++.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~---------~~~--~~l-~~l~~r~~~i~f~~~~~~~~~ 215 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNE---------RNL--PKM-RPFDRVCLDIQFRRPDANSIK 215 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESC---------TTS--STT-GGGTTTSEEEECCCCCHHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcC---------CCC--ccc-hhhHhceEEEEeCCCCHHHHH
Confidence 36899999999997644 488999999876664443322 222 223 568999999999999999999
Q ss_pred HHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 252 AILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 252 ~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++|...+ +++++++.|++.+ +||+|.|+++|+.+.. +...|+.++++++..
T Consensus 216 ~~L~~i~~~~~~~i~~~~l~~la~~s-~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 216 SRLMTIAIREKFKLDPNVIDRLIQTT-RGDIRQVINLLSTIST-----TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHHHTCCCCTTHHHHHHHHT-TTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHH
Confidence 9987654 9999999999999 9999999999987643 234699999988775
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=141.01 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=98.2
Q ss_pred CeEEEEeccCCCCH--HHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCCC---CChhhhhhc---ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDI--ECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRM---VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~--~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~---~ii~~~py 245 (448)
++||||||+|++.. ..++.|+.++++... ..+|++|+ +|++. +.++++||| .++.+.|+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~-----------~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD-----------REPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES-----------SCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC-----------CCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 58999999999975 677777777765332 23333333 33443 789999999 79999999
Q ss_pred CHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 246 QDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 246 s~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
+.++..+||+.++ ++++++++|++.+ .||+|.+.++|+.+..+|...+ ..||.+++++++....
T Consensus 264 ~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~-~gn~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 264 DEETRKSIARKMLEIEHGELPEEVLNFVAENV-DDNLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 9999999998665 8999999999999 9999999999999988775333 4799999999887543
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=137.89 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC-CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCC---CC
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM-LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSS---PH 227 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~-L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp---~~ 227 (448)
.++|+.++.+ ......|. ++|++|||+|+ ++++.+++|++++|+|+.. +||++++. .++ .+
T Consensus 59 ~~~~~l~~~~-~~~plf~~----~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~---------~~~~~~~~ 124 (343)
T 1jr3_D 59 TDWNAIFSLC-QAMSLFAS----RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK---------LSKAQENA 124 (343)
T ss_dssp CCHHHHHHHH-HHHHHCCS----CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC---------CCTTTTTS
T ss_pred CCHHHHHHHh-cCcCCccC----CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC---------CChhhHhh
Confidence 4566655554 33334453 58999999999 9999999999999998876 55555543 222 57
Q ss_pred CCChhhhhhcccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHH
Q psy1686 228 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICME 301 (448)
Q Consensus 228 ~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e 301 (448)
++++++.|||.++.|+|++.+++.+.|+.++ ++++++++|++.+ +||+|.|++.|+.+..++ +.+.||.+
T Consensus 125 k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~-~gdl~~~~~elekl~l~~---~~~~It~e 200 (343)
T 1jr3_D 125 AWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCY-EGNLLALAQALERLSLLW---PDGKLTLP 200 (343)
T ss_dssp HHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSS-TTCHHHHHHHHHHHHHHC---TTCEECHH
T ss_pred HHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-chHHHHHHHHHHHHHHhc---CCCCCCHH
Confidence 8999999999999999999999998887665 9999999999999 999999999999987764 23479999
Q ss_pred HHHHHHHH
Q psy1686 302 DIRKVYAL 309 (448)
Q Consensus 302 ~V~~~~~l 309 (448)
+|+++...
T Consensus 201 ~V~~~~~~ 208 (343)
T 1jr3_D 201 RVEQAVND 208 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=132.96 Aligned_cols=122 Identities=23% Similarity=0.220 Sum_probs=92.2
Q ss_pred CeEEEEeccCCC---------CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCC
Q psy1686 176 PGVLFIDEVHML---------DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQP 244 (448)
Q Consensus 176 ~~VLfIDEVH~L---------~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~p 244 (448)
++||||||+|+| +.+.++.|++.+++...+ .+|++|+.. ..++++.++++|+||| .++.|.+
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~-------~~~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD-------RMENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH-------HHHHHHHHSTTHHHHEEEEEEECC
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH-------HHHHHHhhCHHHHHhCCeEEEcCC
Confidence 479999999988 889999999999997655 444444421 1123444678999999 8999999
Q ss_pred CCHHHHHHHHHHhc------CCHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHhhhh----CCCcccHHHHH
Q psy1686 245 YQDEEIQAILKIRL------MQTDGLRVLTKI-------ALDTSLRYAIQLITTASVVCRRR----KATEICMEDIR 304 (448)
Q Consensus 245 ys~~eI~~IL~~Ra------i~deal~~La~~-------a~~Gd~R~AL~lLe~a~~~a~~~----~~~~It~e~V~ 304 (448)
|+.+++.+|++..+ ++++++++++++ ...|++|.+.++++.+...+..+ ....++.+++.
T Consensus 204 ~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 204 YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99999999998654 999999999998 33589999999999997643211 23456655554
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=134.03 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=89.5
Q ss_pred CeEEEEeccCCCCH--HHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCC---CCChhhhhhc---ccccCCCC
Q psy1686 176 PGVLFIDEVHMLDI--ECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPH---GIPIDLLDRM---VIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~--~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~---~Ip~~lLSR~---~ii~~~py 245 (448)
++||||||+|++.. ..+..|...++... ...+|++++ +|+. .++++|+||| .++.++|
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~-----------~~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD-----------RHPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES-----------SCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec-----------CChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 58999999999975 55555656554322 112333333 2333 5889999999 7899999
Q ss_pred CHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh----hhCCCcc-cHHHHHHHHHHhcc
Q psy1686 246 QDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCR----RRKATEI-CMEDIRKVYALFLD 312 (448)
Q Consensus 246 s~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~----~~~~~~I-t~e~V~~~~~lf~D 312 (448)
+.++..+|++.++ ++++++++|++.+ ||+|.+.++|+.+..... ..+...| +.++|++++..+++
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 9999999998665 9999999999998 999999999998865510 0112357 77888777765444
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=132.97 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=95.6
Q ss_pred CeEEEEeccCCCCHHH------------HHHHHHhhhhcCC--CeEEEEecCceeEeeccc--cCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLDIEC------------FSFLNRALESEMS--PVVITATNRGVTKIRGTA--YSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~------------f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Tt--enp~~~Ip~~lLSR~~- 238 (448)
++|+||||+|.+..+. ++.|++.+|+... ..- ......+.+|.+++ .+.+..++++|+|||.
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~ 195 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVARPSDLIPELQGRLPI 195 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCE
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEEcCCcccCCcccCCHHHHhhCCc
Confidence 4899999999998765 8999999997420 000 00112333444331 2335678999999995
Q ss_pred cccCCCCCHHHHHHHHHH---------------hc----CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHh--
Q psy1686 239 IIPTQPYQDEEIQAILKI---------------RL----MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVVC-- 290 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~---------------Ra----i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~a-- 290 (448)
++.|.||+.+++.+|++. .. ++++++++|++.+. .|++|.+.++++.+...+
T Consensus 196 ~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~ 275 (310)
T 1ofh_A 196 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 275 (310)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHH
T ss_pred eEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhc
Confidence 699999999999999982 11 89999999999973 589999999999976321
Q ss_pred ---hhhCCC-cccHHHHHHHHHH
Q psy1686 291 ---RRRKAT-EICMEDIRKVYAL 309 (448)
Q Consensus 291 ---~~~~~~-~It~e~V~~~~~l 309 (448)
...+.. .|+.++|+++++.
T Consensus 276 ~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 276 SASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HGGGCTTCEEEECHHHHHHHTCS
T ss_pred CCccccCCEEEEeeHHHHHHHHh
Confidence 111222 4999999988753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=124.96 Aligned_cols=124 Identities=26% Similarity=0.316 Sum_probs=93.4
Q ss_pred CeEEEEeccCCC-----------CHHHHHHHHHhhhhc---C--CCe-EEEEecCceeEeeccccCCCCCCChhhhh--h
Q psy1686 176 PGVLFIDEVHML-----------DIECFSFLNRALESE---M--SPV-VITATNRGVTKIRGTAYSSPHGIPIDLLD--R 236 (448)
Q Consensus 176 ~~VLfIDEVH~L-----------~~~~f~~Llk~lEe~---~--~pi-~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R 236 (448)
|.||||||+|.+ +.+.+..|+..++.. . .++ +|.+|| ++..+++++++ |
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn------------~~~~l~~~l~~~~R 178 (285)
T 3h4m_A 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN------------RPDILDPAILRPGR 178 (285)
T ss_dssp SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS------------CGGGBCHHHHSTTS
T ss_pred CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC------------CchhcCHHHcCCCc
Confidence 689999999998 455666666666542 1 223 333333 36779999999 8
Q ss_pred cc-cccCCCCCHHHHHHHHHHhc----C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 237 MV-IIPTQPYQDEEIQAILKIRL----M-QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 237 ~~-ii~~~pys~~eI~~IL~~Ra----i-~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+. ++.+.+++.++..+|++.++ + ++..++.|+..+.+.+.|..-+++..|...|..++...|+.+++++++..+
T Consensus 179 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 84 89999999999999998655 3 233478888888344899999999999888776677789999999998754
Q ss_pred c
Q psy1686 311 L 311 (448)
Q Consensus 311 ~ 311 (448)
.
T Consensus 259 ~ 259 (285)
T 3h4m_A 259 M 259 (285)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=129.63 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=97.7
Q ss_pred CeEEEEeccCCCC----HHHHHHHHHhhhhc-CCC-eEEEEecCceeEeeccccCCCCCCChhhhhhc--ccccCCCCCH
Q psy1686 176 PGVLFIDEVHMLD----IECFSFLNRALESE-MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--VIIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~----~~~f~~Llk~lEe~-~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--~ii~~~pys~ 247 (448)
+.|+||||+|.+. .+.++.|.+.+++. ..+ .+|++|+. ......+.+.+++|| ..+.|.||+.
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~---------~~~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND---------VKFVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC---------GGGGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC---------CChHhhhCHHHhccCCCeeEEeCCCCH
Confidence 6899999999995 56777788877652 222 44444443 111134678899999 6899999999
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL--------MQTDGLRVLTKIALD---TSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 248 ~eI~~IL~~Ra--------i~deal~~La~~a~~---Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+++.+++..++ +++++++++++.+ . |++|.++++++.+...|..++...|+.+++++++...
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALA-AREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999998643 8999999999998 6 9999999999999888765566789999999988743
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-12 Score=126.63 Aligned_cols=214 Identities=20% Similarity=0.208 Sum_probs=132.7
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhc----CC------CCCCCcccccCCCCCcch-hhhhhhccCccccccC
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKE----EV------VMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYD 98 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~----~k------i~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d 98 (448)
+-+..+|.. ++++|||+++++. |.+++.. .. -....+.++||+..|||+ ++... +..+
T Consensus 105 ~~~~~~~~~-~~~iiG~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia-------~~~~ 173 (389)
T 3vfd_A 105 IVDNGTAVK-FDDIAGQDLAKQA---LQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA-------AESN 173 (389)
T ss_dssp TBCCSCCCC-GGGSCSCHHHHHH---HHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH-------HHTT
T ss_pred hhccCCCCC-hHHhCCHHHHHHH---HHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH-------Hhhc
Confidence 334455666 8999999999866 4444421 11 112347899998558875 55321 1111
Q ss_pred CCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeE
Q psy1686 99 GWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGV 178 (448)
Q Consensus 99 ~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~V 178 (448)
..|+.+.+.++. ....++....++..+..+. .. .++|
T Consensus 174 ------~~~~~v~~~~l~----------------------------~~~~g~~~~~~~~~~~~a~-----~~----~~~i 210 (389)
T 3vfd_A 174 ------ATFFNISAASLT----------------------------SKYVGEGEKLVRALFAVAR-----EL----QPSI 210 (389)
T ss_dssp ------CEEEEECSCCC-----------------------------------CHHHHHHHHHHHH-----HS----SSEE
T ss_pred ------CcEEEeeHHHhh----------------------------ccccchHHHHHHHHHHHHH-----hc----CCeE
Confidence 244443222221 0111222234444443321 11 3589
Q ss_pred EEEeccCCC-----------CHHHHHHHHHhhhhcCC----C-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-ccc
Q psy1686 179 LFIDEVHML-----------DIECFSFLNRALESEMS----P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIP 241 (448)
Q Consensus 179 LfIDEVH~L-----------~~~~f~~Llk~lEe~~~----p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~ 241 (448)
|||||||.| ....++.|++.++.... . +||.+||. +..+++++++||. ++.
T Consensus 211 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~------------~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR------------PQELDEAVLRRFIKRVY 278 (389)
T ss_dssp EEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC------------GGGCCHHHHTTCCEEEE
T ss_pred EEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC------------chhcCHHHHcCcceEEE
Confidence 999999988 45667788888875432 2 33334433 6779999999995 899
Q ss_pred CCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHhhhh------------CCCcccHHH
Q psy1686 242 TQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAI-QLITTASVVCRRR------------KATEICMED 302 (448)
Q Consensus 242 ~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL-~lLe~a~~~a~~~------------~~~~It~e~ 302 (448)
+.+++.++..+|++..+ +++++++.|++.+ .|..+.++ +++..|...+..+ ....|+.+|
T Consensus 279 i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~-~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d 357 (389)
T 3vfd_A 279 VSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMT-DGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSD 357 (389)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHH
T ss_pred cCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHH
Confidence 99999999999998655 8999999999999 77666555 4555554444322 234699999
Q ss_pred HHHHHHHh
Q psy1686 303 IRKVYALF 310 (448)
Q Consensus 303 V~~~~~lf 310 (448)
+..++...
T Consensus 358 ~~~al~~~ 365 (389)
T 3vfd_A 358 FTESLKKI 365 (389)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 99888753
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=128.18 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=99.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~ 243 (448)
.+|+||||+|+++...++.|+.++|+.. .+.++++|+... .....+.++++++|||. .+.+.
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~------~~~~~~~l~~~l~~Rf~~~i~i~ 183 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV------EQEGTYPLPEAQVDRFMMKIHLT 183 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT------CCSCCCCCCHHHHTTSSEEEECC
T ss_pred ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC------cccCcccCCHHHHhheeEEEEcC
Confidence 4799999999999999999999999752 222333332200 00112358999999998 49999
Q ss_pred CCCHHHHHHHHHHhc----------------------------CCHHHHHHHHHHcC----C---------------CCH
Q psy1686 244 PYQDEEIQAILKIRL----------------------------MQTDGLRVLTKIAL----D---------------TSL 276 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----------------------------i~deal~~La~~a~----~---------------Gd~ 276 (448)
+++.++..+||+.++ +++++++++++++. . .++
T Consensus 184 ~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~ 263 (331)
T 2r44_A 184 YLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGAST 263 (331)
T ss_dssp CCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCH
T ss_pred CCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcCh
Confidence 999999999987531 68999999988641 1 279
Q ss_pred HHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 277 RYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 277 R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
|.+++++..|...|.-++...|+.+||++++...
T Consensus 264 R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 264 RAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999887766677789999999998754
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=131.47 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=91.8
Q ss_pred CeEEEEeccCCCCHH--------------HHHHHHHhhhhcC-------------CCeEEEEecCceeEeeccc------
Q psy1686 176 PGVLFIDEVHMLDIE--------------CFSFLNRALESEM-------------SPVVITATNRGVTKIRGTA------ 222 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~--------------~f~~Llk~lEe~~-------------~pi~IlaT~~~i~lI~~Tt------ 222 (448)
++|+||||+|.+... .++.|++.+|+.. ...++++|. ++.+|.+++
T Consensus 138 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~-n~~~I~~~~~~~l~~ 216 (376)
T 1um8_A 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTS-DILFICAGAFDGLAE 216 (376)
T ss_dssp TSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECT-TCEEEEEECCTTHHH
T ss_pred CeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecC-CeEEEecCCHHHHHH
Confidence 589999999999887 9999999999752 012222222 233443332
Q ss_pred -----------------c---CC-------------CCCCChhhhhhc-ccccCCCCCHHHHHHHHHH-----------h
Q psy1686 223 -----------------Y---SS-------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKI-----------R 257 (448)
Q Consensus 223 -----------------e---np-------------~~~Ip~~lLSR~-~ii~~~pys~~eI~~IL~~-----------R 257 (448)
. +| .+.++++|++|| .++.|.||+.+++..|+.. +
T Consensus 217 ~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~ 296 (376)
T 1um8_A 217 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQL 296 (376)
T ss_dssp HTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 11 345789999999 7999999999999999851 1
Q ss_pred ------c--CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhh-----CC-CcccHHHHHHHHH
Q psy1686 258 ------L--MQTDGLRVLTKIAL--DTSLRYAIQLITTASVVCRRR-----KA-TEICMEDIRKVYA 308 (448)
Q Consensus 258 ------a--i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~a~~~-----~~-~~It~e~V~~~~~ 308 (448)
. ++++++++|++.+. .|++|...++++.+...+..+ +. ..||.++|++...
T Consensus 297 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 297 FKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 1 99999999999973 399999999999987643211 11 2588888876543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=118.15 Aligned_cols=122 Identities=25% Similarity=0.271 Sum_probs=89.0
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhhcCC-----C-eEEEEecCceeEeeccccCCCCCCChhhhhhc
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALESEMS-----P-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~~-----p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~ 237 (448)
.++||||||+|.+. ...++.|+..++..+. . ++|.+||. +..+++++++||
T Consensus 113 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~------------~~~l~~~l~~R~ 180 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR------------PQELDEAALRRF 180 (297)
T ss_dssp CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC------------GGGBCHHHHHHC
T ss_pred CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC------------hhhCCHHHHhhC
Confidence 36899999999883 4567778888887653 1 33344443 557899999999
Q ss_pred -ccccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHhhhhC------------CCc
Q psy1686 238 -VIIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAI-QLITTASVVCRRRK------------ATE 297 (448)
Q Consensus 238 -~ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL-~lLe~a~~~a~~~~------------~~~ 297 (448)
..+.+.+++.++...|++..+ +++++++.|++.+ .|..+.+| ++++.|...+..+. ...
T Consensus 181 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~-~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~ 259 (297)
T 3b9p_A 181 TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKIT-DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRA 259 (297)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCC
T ss_pred CeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCC
Confidence 488889999999888887543 8899999999998 77665555 66676655543321 246
Q ss_pred ccHHHHHHHHHH
Q psy1686 298 ICMEDIRKVYAL 309 (448)
Q Consensus 298 It~e~V~~~~~l 309 (448)
|+.+|+..++..
T Consensus 260 i~~~d~~~a~~~ 271 (297)
T 3b9p_A 260 ITEQDFHSSLKR 271 (297)
T ss_dssp CCHHHHHHHTTS
T ss_pred cCHHHHHHHHHH
Confidence 889998887754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=120.52 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=79.4
Q ss_pred cCeEEEEeccCCCCH-----------HHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-
Q psy1686 175 VPGVLFIDEVHMLDI-----------ECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~- 238 (448)
.++||||||||.|.. ..++.|+..++... .. +||.+||. +..+++++++||.
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~------------~~~ld~al~~Rf~~ 177 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI------------PWQLDSAIRRRFER 177 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC------------GGGSCHHHHHHCCE
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC------------hhhCCHHHHcccCe
Confidence 368999999999853 34677777777542 23 33334443 6779999999994
Q ss_pred cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 239 IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
.+.+.+++.++..+|++..+ ++++.++.|++.+.+.+.++.-+++..|...|
T Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 178 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999998655 78999999999983338888888888776554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=133.67 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=95.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEe--------------cCceeEeeccccCCCCCCChhhhhhcc---
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITAT--------------NRGVTKIRGTAYSSPHGIPIDLLDRMV--- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT--------------~~~i~lI~~Ttenp~~~Ip~~lLSR~~--- 238 (448)
+++|||||+|+|+..+|+.|++++|+...... .. .-.+.+|.+|+.++.+.++++|++||.
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~ 279 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYG 279 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHS
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccc
Confidence 47999999999999999999999995421000 00 011234444443344678999999994
Q ss_pred -cccCC---CCCHHHHHHHHHHhc-----------CCHHHHHHHHHHcC--CC-------CHHHHHHHHHHHHHHhhhhC
Q psy1686 239 -IIPTQ---PYQDEEIQAILKIRL-----------MQTDGLRVLTKIAL--DT-------SLRYAIQLITTASVVCRRRK 294 (448)
Q Consensus 239 -ii~~~---pys~~eI~~IL~~Ra-----------i~deal~~La~~a~--~G-------d~R~AL~lLe~a~~~a~~~~ 294 (448)
.+.|. +.+.+.+..+++..+ ++++|+..|.+++. .| +.|.+.++++.|..+|..++
T Consensus 280 i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~ 359 (604)
T 3k1j_A 280 YEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG 359 (604)
T ss_dssp EEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred eEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC
Confidence 44544 335555665554211 89999999998763 44 59999999999988887677
Q ss_pred CCcccHHHHHHHHHH
Q psy1686 295 ATEICMEDIRKVYAL 309 (448)
Q Consensus 295 ~~~It~e~V~~~~~l 309 (448)
...|+.+||+++...
T Consensus 360 ~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 360 KKYVEREDVIEAVKM 374 (604)
T ss_dssp CSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHh
Confidence 889999999999864
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-10 Score=116.99 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=80.9
Q ss_pred CeEEEEeccCCCCH-----------HHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhc-cc
Q psy1686 176 PGVLFIDEVHMLDI-----------ECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~i 239 (448)
++||||||+|.|.. ..++.|+..++... .. +||.+||. +..+++++++|| ..
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~------------~~~ld~al~rRf~~~ 211 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI------------PWQLDSAIRRRFERR 211 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC------------GGGSCHHHHHTCCEE
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC------------cccCCHHHHcccCEE
Confidence 68999999999963 34677777777432 22 33444444 667999999999 58
Q ss_pred ccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhh
Q psy1686 240 IPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCR 291 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~ 291 (448)
+.+.+.+.++..+||+..+ +++..++.|++.+ .| +.|+.-+++..|...|.
T Consensus 212 i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t-~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 212 IYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMT-EGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999998655 6899999999999 66 88888888888877654
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=118.25 Aligned_cols=210 Identities=9% Similarity=0.097 Sum_probs=116.7
Q ss_pred cccccccCccCCCCCCCCCccccccccccchhh----hhhhHHHHHHHhcCCC-CCCCcccccCCCCCcch-hh-hhhhc
Q psy1686 17 ERVGAHSHIRGLGLDDSLEPRKVSQGMVGQLQA----RRAAGVVLGMIKEEVV-MVWPCVMCGRGKNPQKV-KK-ISTAT 89 (448)
Q Consensus 17 ~~~~~hsHi~glgL~~~~~p~~~~~~~VGQ~~~----r~a~~~l~~mI~~~ki-~gpf~~~~G~ei~GKtt-~~-I~~~~ 89 (448)
.|.+.|++-...|+++.--......+++||... .+....+.++++...- ..+.+.++||+..|||+ |+ |....
T Consensus 9 ~~~~~~~~~~~fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 9 HHGSTMDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp ----------------CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCccccCCCCCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345667777778987543344446889999655 4445557777763321 22347799998558875 54 22222
Q ss_pred cCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCC-CCCchHHHHHHHHHHHHHHH
Q psy1686 90 GREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDT-GEITPEVREQISAKVTEWRE 168 (448)
Q Consensus 90 gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~-~eI~~eiR~~I~~~v~~~~~ 168 (448)
| .+|+.+.+++ + + .|.. .+-...+++.+..+ .
T Consensus 89 ~--------------~~~~~i~~~~----------------~--------~----~g~~~~~~~~~~~~~~~~~----~- 121 (272)
T 1d2n_A 89 N--------------FPFIKICSPD----------------K--------M----IGFSETAKCQAMKKIFDDA----Y- 121 (272)
T ss_dssp T--------------CSEEEEECGG----------------G--------C----TTCCHHHHHHHHHHHHHHH----H-
T ss_pred C--------------CCEEEEeCHH----------------H--------h----cCCchHHHHHHHHHHHHHH----H-
Confidence 2 1343311110 0 0 0110 00012344433322 1
Q ss_pred hCcccccCeEEEEeccCCC----------CHHHHHHHHHhhhhcC---CCeEEEEecCceeEeeccccCCCCCCCh-hhh
Q psy1686 169 EGKAEIVPGVLFIDEVHML----------DIECFSFLNRALESEM---SPVVITATNRGVTKIRGTAYSSPHGIPI-DLL 234 (448)
Q Consensus 169 ~g~~~i~~~VLfIDEVH~L----------~~~~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Ttenp~~~Ip~-~lL 234 (448)
.+ .+++|||||||.| ....+++|...++... .+++|++|+. ++..+++ .++
T Consensus 122 ~~----~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn-----------~~~~l~~~~l~ 186 (272)
T 1d2n_A 122 KS----QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS-----------RKDVLQEMEML 186 (272)
T ss_dssp TS----SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES-----------CHHHHHHTTCT
T ss_pred hc----CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC-----------Chhhcchhhhh
Confidence 11 2589999999997 5567777877777532 2343433332 1222333 578
Q ss_pred hh-cccccCCCCCH-HHHHHHHHHhc-CCHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHH
Q psy1686 235 DR-MVIIPTQPYQD-EEIQAILKIRL-MQTDGLRVLTKIALDT-----SLRYAIQLITTASVV 289 (448)
Q Consensus 235 SR-~~ii~~~pys~-~eI~~IL~~Ra-i~deal~~La~~a~~G-----d~R~AL~lLe~a~~~ 289 (448)
+| |..|.+.|++. ++|.+++.... ++++++..|++.+ .| ++|.++++++.|...
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~-~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV-KGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH-TTSEEEECHHHHHHHHHHHTTS
T ss_pred cccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh-cCCCccccHHHHHHHHHHHhhh
Confidence 88 57899999998 88999988444 9999999999998 66 999999999988543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.8e-11 Score=117.97 Aligned_cols=122 Identities=22% Similarity=0.241 Sum_probs=89.3
Q ss_pred CeEEEEeccCCCC-----------HHHHHHHHHhhhhcC----CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-
Q psy1686 176 PGVLFIDEVHMLD-----------IECFSFLNRALESEM----SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~----~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~- 238 (448)
++||||||||.|. ...++.|+..++... .. +||.+||. +..+++++++||.
T Consensus 177 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~------------~~~l~~~l~~Rf~~ 244 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR------------PQEIDEAARRRLVK 244 (357)
T ss_dssp SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC------------GGGBCHHHHTTCCE
T ss_pred CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC------------hhhCCHHHHhhCce
Confidence 6899999999883 245667777777432 22 33334433 6679999999996
Q ss_pred cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhh------------CCCccc
Q psy1686 239 IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRR------------KATEIC 299 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~------------~~~~It 299 (448)
.+.+.+++.++..++++..+ +++++++.|++.+ .| +.++.-++...|...+..+ ....|+
T Consensus 245 ~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t-~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~ 323 (357)
T 3d8b_A 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-DAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIA 323 (357)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBC
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcC
Confidence 88999999999999887544 7899999999998 66 8887777777776544321 234689
Q ss_pred HHHHHHHHHHh
Q psy1686 300 MEDIRKVYALF 310 (448)
Q Consensus 300 ~e~V~~~~~lf 310 (448)
.+|+..++..+
T Consensus 324 ~~d~~~al~~~ 334 (357)
T 3d8b_A 324 YIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99998888643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=110.92 Aligned_cols=210 Identities=17% Similarity=0.231 Sum_probs=133.2
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC--------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE--------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
|...|++++|++++.+...-+...++.. +.+ +.+.++||+..|||+ ++...+ ..+ .+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~vll~G~~GtGKT~la~~la~-------~~~------~~ 72 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAG-------EAK------VP 72 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCC-CEEEEECCTTSCHHHHHHHHHH-------HHT------CC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCC-CeEEEECcCCCCHHHHHHHHHH-------HcC------CC
Confidence 3445899999999988865555544432 112 236799998558876 553311 111 12
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+.+...++. ..+. ++-...++.....+. .+ .+.++||||||.
T Consensus 73 ~~~i~~~~~~-------------------------~~~~---~~~~~~~~~~~~~a~-----~~----~~~il~iDeid~ 115 (257)
T 1lv7_A 73 FFTISGSDFV-------------------------EMFV---GVGASRVRDMFEQAK-----KA----APCIIFIDEIDA 115 (257)
T ss_dssp EEEECSCSST-------------------------TSCC---CCCHHHHHHHHHHHH-----TT----CSEEEEETTHHH
T ss_pred EEEEeHHHHH-------------------------HHhh---hhhHHHHHHHHHHHH-----Hc----CCeeehhhhhhh
Confidence 3332221111 1111 122245555444331 11 368999999988
Q ss_pred CCH--------------HHHHHHHHhhhhcC--CC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCC
Q psy1686 187 LDI--------------ECFSFLNRALESEM--SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 246 (448)
Q Consensus 187 L~~--------------~~f~~Llk~lEe~~--~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys 246 (448)
+.. ..++.|+..++... .+ ++|.+||. +..+++++++ |+. .+.+.+.+
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~------------~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR------------PDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC------------TTTSCGGGGSTTSSCEEEECCCCC
T ss_pred hccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC------------chhCCHHHcCCCcCCeEEEeCCCC
Confidence 743 34566666666432 22 44444444 5678888887 663 78888889
Q ss_pred HHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
.++-.+|++... +++++ +.+++... .| +.|+.-+++..|...|..++...|+.+++++++..
T Consensus 184 ~~~r~~il~~~~~~~~l~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 999888888544 44443 67788877 88 99999999999998887667778999999998864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=113.47 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred CeEEEEeccCCC------------CHHHHHHHHHhhhh---c--CCC-eEEEEecCceeEeeccccCCCCCCChhhhh--
Q psy1686 176 PGVLFIDEVHML------------DIECFSFLNRALES---E--MSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD-- 235 (448)
Q Consensus 176 ~~VLfIDEVH~L------------~~~~f~~Llk~lEe---~--~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS-- 235 (448)
++||||||+|.| +.+.+..|+..++. . ..+ ++|.+||. +..+++++++
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~------------~~~ld~~l~~~~ 166 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR------------ADILDGALMRPG 166 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC------------GGGGGSGGGSTT
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC------------hhhcCHHHhcCC
Confidence 689999999999 33344444444443 1 122 33333333 5567888988
Q ss_pred hc-ccccCCCCCHHHHHHHHHHhc------CCHH-HHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 236 RM-VIIPTQPYQDEEIQAILKIRL------MQTD-GLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 236 R~-~ii~~~pys~~eI~~IL~~Ra------i~de-al~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
|+ ..+.+.+++.++..+|++..+ .+++ .+..|++.+ .| +.|..-+++..|...|..++...|+.++++++
T Consensus 167 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a 245 (262)
T 2qz4_A 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELT-PGFSGADIANICNEAALHAAREGHTSVHTLNFEYA 245 (262)
T ss_dssp SCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTC-TTCCHHHHHHHHHHHHTC--------CCBCCHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 88 588899999999999998644 4444 357888887 55 77888888888877665556678999999988
Q ss_pred HHH
Q psy1686 307 YAL 309 (448)
Q Consensus 307 ~~l 309 (448)
+..
T Consensus 246 ~~~ 248 (262)
T 2qz4_A 246 VER 248 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-10 Score=112.38 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=120.4
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc---------C-CCCCCCcccccCCCCCcch-hhhh-hhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE---------E-VVMVWPCVMCGRGKNPQKV-KKIS-TATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~---------~-ki~gpf~~~~G~ei~GKtt-~~I~-~~~gk~~a~~~d~~~~~ 103 (448)
|...+++++|++.+++. |.++|.. + .-+..-+.++|||..|||+ ++.. ...+ +
T Consensus 7 ~~~~~~di~G~~~~k~~---l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-------~----- 71 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEA---LKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------N----- 71 (322)
T ss_dssp CCCCGGGSCSCHHHHHH---HHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-------S-----
T ss_pred CCCCHHHhcCHHHHHHH---HHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-------C-----
Confidence 55568999999999876 4555531 1 1111237789999558875 5522 2221 0
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+...++ .+.-.++....+|+....+. .. .+.|+||||
T Consensus 72 -~~~~~i~~~~l----------------------------~~~~~g~~~~~~~~lf~~a~-----~~----~~~vl~iDE 113 (322)
T 1xwi_A 72 -STFFSISSSDL----------------------------VSKWLGESEKLVKNLFQLAR-----EN----KPSIIFIDE 113 (322)
T ss_dssp -CEEEEEECCSS----------------------------CCSSCCSCHHHHHHHHHHHH-----HT----SSEEEEEET
T ss_pred -CcEEEEEhHHH----------------------------HhhhhhHHHHHHHHHHHHHH-----hc----CCcEEEeec
Confidence 13333211111 11112233355555554332 11 368999999
Q ss_pred cCCCC-----------HHHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCH
Q psy1686 184 VHMLD-----------IECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQD 247 (448)
Q Consensus 184 VH~L~-----------~~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~ 247 (448)
+|.+. ....+.|+..++... .. +||.+||. +..+++++++|| ..+.+.+.+.
T Consensus 114 id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~------------~~~ld~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 114 IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI------------PWVLDSAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC------------TTTSCHHHHHTCCEEEECCCCCH
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC------------cccCCHHHHhhcCeEEEeCCcCH
Confidence 99982 244666777776532 22 33344444 778999999999 5899999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
++..+|++..+ +++..++.|++.+.+.+.++--++...|...|
T Consensus 182 ~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp HHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999998644 68999999999983347888888888776544
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.6e-12 Score=130.47 Aligned_cols=200 Identities=15% Similarity=0.126 Sum_probs=124.9
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+..|.+..+|.. ++.+|||++..+. +.+.+......+ +.++|||..|||+ ++..... ...
T Consensus 167 ~~~l~~~~r~~~-ld~iiGr~~~i~~---l~~~l~r~~~~~--~LL~G~pG~GKT~la~~la~~-------l~~------ 227 (468)
T 3pxg_A 167 ARDLTAIAKEDS-LDPVIGRSKEIQR---VIEVLSRRTKNN--PVLIGEPGVGKTAIAEGLAQQ-------IIN------ 227 (468)
T ss_dssp CCBHHHHTTSSC-SCCCCCCHHHHHH---HHHHHHCSSSCE--EEEESCTTTTTHHHHHHHHHH-------HHS------
T ss_pred HHHHHHHHhcCC-CCCccCcHHHHHH---HHHHHhccCCCC--eEEECCCCCCHHHHHHHHHHH-------HHh------
Confidence 445666778887 7999999998765 667776665566 5699999558876 4422111 000
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
.++| .. .....+..+|+. + ...++....++..++.+. .. .++|||||
T Consensus 228 ~~~p--~~--------l~~~~~~~l~~~-~----------~~~g~~e~~~~~~~~~~~-----~~----~~~iLfiD--- 274 (468)
T 3pxg_A 228 NEVP--EI--------LRDKRVMTLDMG-T----------KYRGEFEDRLKKVMDEIR-----QA----GNIILFID--- 274 (468)
T ss_dssp SCSC--TT--------TSSCCEECC---------------------CTTHHHHHHHHH-----TC----CCCEEEEC---
T ss_pred CCCC--hh--------hcCCeEEEeeCC-c----------cccchHHHHHHHHHHHHH-----hc----CCeEEEEe---
Confidence 0111 10 001122233333 1 112333356666665442 11 25899999
Q ss_pred CCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 186 MLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
.+.++++.|+++++. +.+.+|++||.+++ +.+++++++||.++.+.+++.+++.+||+..+
T Consensus 275 -~~~~a~~~L~~~L~~-----------g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~ 342 (468)
T 3pxg_A 275 -AAIDASNILKPSLAR-----------GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYE 342 (468)
T ss_dssp -C--------CCCTTS-----------SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSG
T ss_pred -CchhHHHHHHHhhcC-----------CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHH
Confidence 567888999999983 56777788876653 56899999999999999999999999998533
Q ss_pred ------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHh
Q psy1686 259 ------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVVC 290 (448)
Q Consensus 259 ------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~a 290 (448)
++++++..+++++. ..-.++|+++|+.|...+
T Consensus 343 ~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 343 AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 89999999999861 224678999999887544
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=116.94 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=85.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccc--cC---C---------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTA--YS---S---------PHGI 229 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Tt--en---p---------~~~I 229 (448)
++|+||||+|.++.+.++.|++.+|+.. ..+||++||.+...|.... .. . ...+
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 199 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHS
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999864 1235556554210000000 00 0 1246
Q ss_pred Chhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q psy1686 230 PIDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVV 289 (448)
Q Consensus 230 p~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~ 289 (448)
+++|++|| .++.|.|++.+++.+|++... ++++++++|++.+. .|++|..-++++.+...
T Consensus 200 ~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 200 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred CHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 88999999 699999999999999987521 89999999999985 58999999999887543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.19 E-value=6.4e-11 Score=126.28 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=88.7
Q ss_pred CeEEEEeccCCCCHH----HHHHHHHhhhhcCCCeEEEE------ecCceeEeeccccCCCCCCChhhhhhcccccCCCC
Q psy1686 176 PGVLFIDEVHMLDIE----CFSFLNRALESEMSPVVITA------TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~----~f~~Llk~lEe~~~pi~Ila------T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~py 245 (448)
.+|+||||||.+..+ .++.|++.+++.....|.-. ....+.+| +|.|++..+|++|++||.+|.|.+|
T Consensus 176 ~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI--~ttN~~~~l~~aL~~R~~vi~~~~~ 253 (543)
T 3m6a_A 176 NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI--ATANNLATIPGPLRDRMEIINIAGY 253 (543)
T ss_dssp SEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE--EECSSTTTSCHHHHHHEEEEECCCC
T ss_pred CCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE--eccCccccCCHHHHhhcceeeeCCC
Confidence 479999999999887 46999999976432111000 00112222 1223477899999999999999999
Q ss_pred CHHHHHHHHHHhc----------------CCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHhhh------hCCCcccHHH
Q psy1686 246 QDEEIQAILKIRL----------------MQTDGLRVLTK-IALDTSLRYAIQLITTASVVCRR------RKATEICMED 302 (448)
Q Consensus 246 s~~eI~~IL~~Ra----------------i~deal~~La~-~a~~Gd~R~AL~lLe~a~~~a~~------~~~~~It~e~ 302 (448)
+.++..+|++... ++++++..|++ +...|++|..-+.++.+...+.. .+...|+.++
T Consensus 254 ~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~ 333 (543)
T 3m6a_A 254 TEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKN 333 (543)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHH
Confidence 9999999987521 78999998877 55457888888888776544321 1334699999
Q ss_pred HHHHHH
Q psy1686 303 IRKVYA 308 (448)
Q Consensus 303 V~~~~~ 308 (448)
++++++
T Consensus 334 l~~~Lg 339 (543)
T 3m6a_A 334 LQDFIG 339 (543)
T ss_dssp THHHHC
T ss_pred HHHHhC
Confidence 999885
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-11 Score=112.92 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=85.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~ 241 (448)
.++|||||||.++.+.|+.|++.+++.. ...+|++||....-. -. ...+.++|++|+. .+.
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~---~~--~~~~~~~L~~Rl~~~~i~ 175 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM---VN--EGTFRADLLDALAFDVVQ 175 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH---HH--HTSSCHHHHHHHCSEEEE
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH---HH--cCCccHHHHHhhcCcEEe
Confidence 4899999999999999999999999741 124555555411000 00 1135799999984 588
Q ss_pred CCCCCH--HHHHHHHHHh--------------cCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHH
Q psy1686 242 TQPYQD--EEIQAILKIR--------------LMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDI 303 (448)
Q Consensus 242 ~~pys~--~eI~~IL~~R--------------ai~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V 303 (448)
+.|+.. +|+..+++.. .++++++++|..++..|++|...++++.+...+. +..|+.+++
T Consensus 176 lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 176 LPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 999986 6776554321 1689999999988778999999999999876652 345665554
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-11 Score=128.66 Aligned_cols=227 Identities=18% Similarity=0.225 Sum_probs=140.2
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+.+|.+..+|.. ++.+|||++..+. +.+.+...+-.+ +.++|++..|||+ ++..... ..+
T Consensus 173 ~~~l~~~~~~~~-~d~~iGr~~~i~~---l~~~l~~~~~~~--vlL~G~~GtGKT~la~~la~~-------l~~------ 233 (758)
T 1r6b_X 173 TTNLNQLARVGG-IDPLIGREKELER---AIQVLCRRRKNN--PLLVGESGVGKTAIAEGLAWR-------IVQ------ 233 (758)
T ss_dssp SCBHHHHHHTTC-SCCCCSCHHHHHH---HHHHHTSSSSCE--EEEECCTTSSHHHHHHHHHHH-------HHH------
T ss_pred hHhHHHHHhcCC-CCCccCCHHHHHH---HHHHHhccCCCC--eEEEcCCCCCHHHHHHHHHHH-------HHh------
Confidence 344556677887 7999999998654 566666554444 6799999558876 4421110 000
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcC--CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG--DTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~--~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..+| . ... ...+..+|+ .++..| ..++....++..++.+ ... .++||||||
T Consensus 234 ~~v~--~--~~~------~~~~~~~~~--------~~l~~~~~~~g~~e~~l~~~~~~~-----~~~----~~~iL~IDE 286 (758)
T 1r6b_X 234 GDVP--E--VMA------DCTIYSLDI--------GSLLAGTKYRGDFEKRFKALLKQL-----EQD----TNSILFIDE 286 (758)
T ss_dssp TCSC--G--GGT------TCEEEECCC--------C---CCCCCSSCHHHHHHHHHHHH-----SSS----SCEEEEETT
T ss_pred CCCC--h--hhc------CCEEEEEcH--------HHHhccccccchHHHHHHHHHHHH-----Hhc----CCeEEEEec
Confidence 0011 0 000 000111111 111211 2234434455444332 111 258999999
Q ss_pred cCCC---------CHHHHHHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 184 VHML---------DIECFSFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 184 VH~L---------~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
+|.| ..+.++.|.++++. +.+.+|++|+. ...+.++++|.+||..+.+.+++.++..
T Consensus 287 i~~l~~~~~~~~~~~~~~~~L~~~l~~-----------~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~ 355 (758)
T 1r6b_X 287 IHTIIGAGAASGGQVDAANLIKPLLSS-----------GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV 355 (758)
T ss_dssp TTTTTTSCCSSSCHHHHHHHHSSCSSS-----------CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHH
T ss_pred hHHHhhcCCCCcchHHHHHHHHHHHhC-----------CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHH
Confidence 9999 34567777777773 44555666653 2367788899999999999999999998
Q ss_pred HHHHHhc----------CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhhh----hCCCcccHHHHHHHHHHh
Q psy1686 252 AILKIRL----------MQTDGLRVLTKIAL-----DTSLRYAIQLITTASVVCRR----RKATEICMEDIRKVYALF 310 (448)
Q Consensus 252 ~IL~~Ra----------i~deal~~La~~a~-----~Gd~R~AL~lLe~a~~~a~~----~~~~~It~e~V~~~~~lf 310 (448)
+||+..+ +++++++.+++.+. ......++.+++.|...+.. .+...|+.++|.+++..+
T Consensus 356 ~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 356 QIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 8887422 89999999998861 22456899999988655432 134579999999988754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=113.13 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=87.3
Q ss_pred CeEEEEeccCCCCHH---------------HHHHHHHhhhhcCC---C-eEEEEecCceeEeeccccCCCCCCChhhhh-
Q psy1686 176 PGVLFIDEVHMLDIE---------------CFSFLNRALESEMS---P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD- 235 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~---------------~f~~Llk~lEe~~~---p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS- 235 (448)
++||||||+|.|... .++.|++.+++... + ++|.+||. +..+++++++
T Consensus 104 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~------------~~~ld~~l~r~ 171 (268)
T 2r62_A 104 PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR------------PEILDPALMRP 171 (268)
T ss_dssp SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC------------CTTSCGGGGSS
T ss_pred CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC------------chhcCHhHcCC
Confidence 589999999999653 35566777765432 2 23333332 5668889998
Q ss_pred -hc-ccccCCCCCHHHHHHHHHHhc----CC-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 236 -RM-VIIPTQPYQDEEIQAILKIRL----MQ-TDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 236 -R~-~ii~~~pys~~eI~~IL~~Ra----i~-deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
|+ ..+.+.+++.++..++|+..+ +. +..++.|++.+ .| +.|+..++++.|...|...+...|+.+++.+++
T Consensus 172 ~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 250 (268)
T 2r62_A 172 GRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLT-AGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV 250 (268)
T ss_dssp SSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSS-CSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSC
T ss_pred CCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 65 479999999999999998655 32 33367788777 55 788999999999887755556789999998876
Q ss_pred HH
Q psy1686 308 AL 309 (448)
Q Consensus 308 ~l 309 (448)
..
T Consensus 251 ~~ 252 (268)
T 2r62_A 251 ER 252 (268)
T ss_dssp TT
T ss_pred HH
Confidence 53
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-10 Score=123.47 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=78.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~ 242 (448)
++|||||||+.++.+.|+.|++.+|+.. . .++|++||.+...-.......-..++++|++|| .++.|
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 4799999999999999999999999832 2 266666664210000000000011689999999 79999
Q ss_pred CCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q psy1686 243 QPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA--LDTSLRYAIQLITTAS 287 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra---------------i~deal~~La~~a--~~Gd~R~AL~lLe~a~ 287 (448)
.||+.+++.+|++... ++++++++|++.+ -.|++|..-+.++++.
T Consensus 660 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 9999999999887422 8999999998853 3567777777777553
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.6e-10 Score=115.00 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=80.2
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhhcC---CC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc-
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALESEM---SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV- 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~---~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~- 238 (448)
.++||||||||.|. ...++.|+..+++.. .. +||.+||. +..+++++++||.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~------------~~~ld~al~rRf~~ 294 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI------------PWVLDSAIRRRFEK 294 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC------------GGGSCHHHHTTCCE
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC------------ccccCHHHHhhcce
Confidence 36999999999983 356777888887642 22 44445544 6789999999994
Q ss_pred cccCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Q psy1686 239 IIPTQPYQDEEIQAILKIRL------MQTDGLRVLTKIALDT-SLRYAIQLITTASVVC 290 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra------i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a 290 (448)
++.+.+.+.++...|++..+ +++..++.|++.+ .| +.|+--+++..|...|
T Consensus 295 ~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 295 RIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKT-DGYSGADISIIVRDALMQP 352 (444)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 88899999999999998654 7899999999998 66 8888888888776554
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-09 Score=115.02 Aligned_cols=212 Identities=19% Similarity=0.253 Sum_probs=134.2
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcC--------CCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEE--------VVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
.|+..|++++|++.+.+...-+.+.++.. +++. .+.++|||..|||+ ++...+ ..+ .
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~-gvLL~GppGtGKT~Laraia~-------~~~------~ 75 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPK-GILLVGPPGTGKTLLARAVAG-------EAN------V 75 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCS-EEEEECCTTSSHHHHHHHHHH-------HHT------C
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCC-eEEEECCCCCCHHHHHHHHHH-------HcC------C
Confidence 34556899999999987755444444321 2221 27799999558876 553321 111 1
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
+|+.+...++ ...+.|. -...+|..+..+.. + .|.||||||+|
T Consensus 76 ~f~~is~~~~-------------------------~~~~~g~---~~~~~r~lf~~A~~-----~----~p~ILfIDEid 118 (476)
T 2ce7_A 76 PFFHISGSDF-------------------------VELFVGV---GAARVRDLFAQAKA-----H----APCIVFIDEID 118 (476)
T ss_dssp CEEEEEGGGT-------------------------TTCCTTH---HHHHHHHHHHHHHH-----T----CSEEEEEETGG
T ss_pred CeeeCCHHHH-------------------------HHHHhcc---cHHHHHHHHHHHHh-----c----CCCEEEEechh
Confidence 3433211111 1111111 11456665554421 1 37999999999
Q ss_pred CCCH--------------HHHHHHHHhhhhcC--CC-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCC
Q psy1686 186 MLDI--------------ECFSFLNRALESEM--SP-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPY 245 (448)
Q Consensus 186 ~L~~--------------~~f~~Llk~lEe~~--~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~py 245 (448)
.|.. ..++.|+..++... .+ ++|.+||. +..+.++++. |+- .+.+.+.
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~------------~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR------------PDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC------------GGGSCGGGGSTTSSCEEEECCCC
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC------------hhhhchhhcccCcceeEeecCCC
Confidence 9843 34667777776422 22 44444444 5567788886 765 7889999
Q ss_pred CHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 246 QDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+.++-.+|++..+ +.+++ ++.|++.. .| +.|+.-+++..|...|..++...|+.+++.+++...
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t-~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAEDVNLEIIAKRT-PGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchhhHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 9998888987544 44443 78888888 66 669999999999887765666789999999998743
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-11 Score=132.28 Aligned_cols=203 Identities=19% Similarity=0.178 Sum_probs=117.8
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhc---cCccccccCCCccCC
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTAT---GREEEPDYDGWLADV 104 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~---gk~~a~~~d~~~~~~ 104 (448)
+|.+..+|.. ++.+|||++..+. +.+.+..++..+ +.++|||..|||+ ++..... |.+. ..+ ..
T Consensus 159 ~l~~~~r~~~-ld~viGr~~~i~~---l~~~l~~~~~~~--vlL~G~pG~GKT~la~~la~~l~~~~~p----~~l--~~ 226 (854)
T 1qvr_A 159 DLTRLAAEGK-LDPVIGRDEEIRR---VIQILLRRTKNN--PVLIGEPGVGKTAIVEGLAQRIVKGDVP----EGL--KG 226 (854)
T ss_dssp EHHHHHHTTC-SCCCCSCHHHHHH---HHHHHHCSSCCC--CEEEECTTSCHHHHHHHHHHHHHHTCSC----TTS--TT
T ss_pred hHHHHHhcCC-CcccCCcHHHHHH---HHHHHhcCCCCc--eEEEcCCCCCHHHHHHHHHHHHhcCCCc----hhh--cC
Confidence 3445567877 7999999987654 556666665556 6799999558876 4422111 1000 000 00
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcC--CCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEe
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAG--DTGEITPEVREQISAKVTEWREEGKAEIVPGVLFID 182 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~--~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfID 182 (448)
..++. +|+ .++.+| ..++....++..+..+. ..+ .+.|||||
T Consensus 227 ~~~~~--------------------l~~--------~~l~~g~~~~g~~~~~l~~~~~~~~----~~~----~~~iL~ID 270 (854)
T 1qvr_A 227 KRIVS--------------------LQM--------GSLLAGAKYRGEFEERLKAVIQEVV----QSQ----GEVILFID 270 (854)
T ss_dssp CEEEE--------------------ECC-------------------CHHHHHHHHHHHHH----TTC----SSEEEEEC
T ss_pred CeEEE--------------------eeh--------HHhhccCccchHHHHHHHHHHHHHH----hcC----CCeEEEEe
Confidence 11222 111 111111 12233344554444331 111 25899999
Q ss_pred ccCCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC--CCCChhhhhhcccccCCCCCHHHHHH
Q psy1686 183 EVHMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP--HGIPIDLLDRMVIIPTQPYQDEEIQA 252 (448)
Q Consensus 183 EVH~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~--~~Ip~~lLSR~~ii~~~pys~~eI~~ 252 (448)
|+|+|. .+.++.|.++++. +.+.+|++||..++ +.+.++|++||..+.+.+++.++..+
T Consensus 271 Ei~~l~~~~~~~g~~~~~~~L~~~l~~-----------~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 271 ELHTVVGAGKAEGAVDAGNMLKPALAR-----------GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp CC-------------------HHHHHT-----------TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred cHHHHhccCCccchHHHHHHHHHHHhC-----------CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 999997 6778889999884 44556666654433 45789999999999999999999999
Q ss_pred HHHHhc----------CCHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHh
Q psy1686 253 ILKIRL----------MQTDGLRVLTKIA-----LDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 253 IL~~Ra----------i~deal~~La~~a-----~~Gd~R~AL~lLe~a~~~a 290 (448)
||+... ++++++..+++++ ...-.+.|+.+++.|...+
T Consensus 340 iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 340 ILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHH
Confidence 986321 8999999999986 1224889999999887544
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-10 Score=121.76 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=95.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeE----EEEecCceeEeeccccCCCC-------------CCChhhhhhc-
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVV----ITATNRGVTKIRGTAYSSPH-------------GIPIDLLDRM- 237 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~----IlaT~~~i~lI~~Ttenp~~-------------~Ip~~lLSR~- 237 (448)
.+|+||||+|+++.+.++.|+.++|+....+. ...-+....+|.+|+ |.+ .+|++|+|||
T Consensus 392 ~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatN--p~~G~~~~~~~~~~ni~l~~aLl~RFD 469 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGN--PKFGRYISERPVSDNINLPPTILSRFD 469 (595)
T ss_dssp SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEEC--CTTCCSCTTSCSCTTTCSCSSSGGGCS
T ss_pred CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcC--CcCCccCcccCchhccCCCHHHHhhCe
Confidence 38999999999999999999999997431000 000011122333332 222 7999999999
Q ss_pred ccccCCCCCHHHHHHHHHH----------------------------h---cCCHHHHHHHHHH--------------cC
Q psy1686 238 VIIPTQPYQDEEIQAILKI----------------------------R---LMQTDGLRVLTKI--------------AL 272 (448)
Q Consensus 238 ~ii~~~pys~~eI~~IL~~----------------------------R---ai~deal~~La~~--------------a~ 272 (448)
+++.+.++...+-..|++. . .+++++.++|.++ +.
T Consensus 470 l~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~ 549 (595)
T 3f9v_A 470 LIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPI 549 (595)
T ss_dssp CCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCB
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 6788888877652222221 0 1777888888888 33
Q ss_pred CCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 273 DTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 273 ~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+++|...+++..|...|..+++..|+.+||++++.++
T Consensus 550 ~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 550 LITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 67999999999999888877788899999999999875
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-09 Score=108.79 Aligned_cols=207 Identities=19% Similarity=0.194 Sum_probs=138.8
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCCC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGW 100 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~ 100 (448)
|.-.++++.|.+++.++ |+++|.- |- -.| +.++|||.+|||. |+ |...+| +
T Consensus 143 p~v~~~dIgGl~~~k~~---l~e~v~~Pl~~pe~f~~~gi~~prG--vLL~GPPGTGKTllAkAiA~e~~--------~- 208 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKE---IKEVIELPVKHPELFESLGIAQPKG--VILYGPPGTGKTLLARAVAHHTD--------C- 208 (405)
T ss_dssp CSCCGGGSCSCHHHHHH---HHHHTHHHHHCHHHHHHHTCCCCCC--EEEESCSSSSHHHHHHHHHHHHT--------C-
T ss_pred CCCCHHHhCCHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCc--eEEeCCCCCCHHHHHHHHHHhhC--------C-
Confidence 67779999999999877 4444432 11 125 7889999658875 55 333333 1
Q ss_pred ccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEE
Q psy1686 101 LADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLF 180 (448)
Q Consensus 101 ~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLf 180 (448)
.|..+. .+.+.+.-.+|--..||+....+... .|.|+|
T Consensus 209 -----~f~~v~----------------------------~s~l~sk~vGese~~vr~lF~~Ar~~---------aP~IIF 246 (405)
T 4b4t_J 209 -----KFIRVS----------------------------GAELVQKYIGEGSRMVRELFVMAREH---------APSIIF 246 (405)
T ss_dssp -----EEEEEE----------------------------GGGGSCSSTTHHHHHHHHHHHHHHHT---------CSEEEE
T ss_pred -----CceEEE----------------------------hHHhhccccchHHHHHHHHHHHHHHh---------CCceEe
Confidence 343311 11122222233336677766655321 379999
Q ss_pred EeccCCCCH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cc
Q psy1686 181 IDEVHMLDI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-II 240 (448)
Q Consensus 181 IDEVH~L~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii 240 (448)
|||++.+.. ..++.|+..++.... + ++|.|||+ |..+.++|+. |+- .|
T Consensus 247 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr------------pd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 247 MDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR------------LDILDPALLRPGRIDRKI 314 (405)
T ss_dssp EESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC------------SSSSCHHHHSTTSSCCEE
T ss_pred eecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC------------hhhCCHhHcCCCcCceEE
Confidence 999999832 235666666664332 2 56667776 8889999996 774 88
Q ss_pred cCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 241 PTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+.+-+.++-.+||+... ++++ -++.||+.+.+-+.++--++...|+..|..++...|+.+|+..++...
T Consensus 315 ~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 315 EFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 888889988888887533 4433 378899998334888888889889888876777889999999988643
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.2e-10 Score=121.22 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=83.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------C-CeEEEEecCceeEe-----eccccCCC--------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------S-PVVITATNRGVTKI-----RGTAYSSP--------HGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~-pi~IlaT~~~i~lI-----~~Ttenp~--------~~Ip 230 (448)
++|+|||||+.++.+.|+.|++.+|+.. . .+||++||.+...+ +.+++.+. ..++
T Consensus 558 ~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 558 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred CcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 5899999999999999999999999753 1 24677777643111 11111000 1478
Q ss_pred hhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Q psy1686 231 IDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIALDT--SLRYAIQLITTASV 288 (448)
Q Consensus 231 ~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~~G--d~R~AL~lLe~a~~ 288 (448)
++|++|| .++.|.||+.+++..|++..+ ++++++++|++.+..+ ++|...++++.+..
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 9999999 699999999999999887532 7999999999886444 58988888887654
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=115.95 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CCeEEEEecCceeEeeccccCC-CCCCChhhhhhcc-cccC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------SPVVITATNRGVTKIRGTAYSS-PHGIPIDLLDRMV-IIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~pi~IlaT~~~i~lI~~Ttenp-~~~Ip~~lLSR~~-ii~~ 242 (448)
++|+|||||++++...++.|+.++|+.. .+.+|+|||. -| .-..+.++++|+. .+.+
T Consensus 110 ~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~----------lpe~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE----------LPEADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS----------CCCTTCTTHHHHTTCCEEEEC
T ss_pred ceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc----------CCCccccHHHHHHHHHHHHHH
Confidence 5799999999999999999999998642 2244555553 11 1123459999985 4666
Q ss_pred CCCCH-HHHHHHHHHh---------------------------c--CCHHHHHHHHHHc---------CCCCHHHHHHHH
Q psy1686 243 QPYQD-EEIQAILKIR---------------------------L--MQTDGLRVLTKIA---------LDTSLRYAIQLI 283 (448)
Q Consensus 243 ~pys~-~eI~~IL~~R---------------------------a--i~deal~~La~~a---------~~Gd~R~AL~lL 283 (448)
.+.+. ++...|++.+ . ++++++++++++. ...+.|.++.++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 77765 5666777532 1 8899999998875 234999999999
Q ss_pred HHHHHHhhhhCCCcccHHHHH
Q psy1686 284 TTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 284 e~a~~~a~~~~~~~It~e~V~ 304 (448)
..|...|.-+++..|+.+||+
T Consensus 260 r~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhhcCCccccchHHH
Confidence 998888877788899999998
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=108.11 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=87.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPT 242 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~ 242 (448)
++|||||||.+..+.|..|++.+|+.. ...+|.+||.... ..-. .-...++|.+|+. .+.+
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~---~~v~--~g~fr~~L~~Rl~~~~i~l 172 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---EEVS--AGRFRQDLYYRLNVVAIEM 172 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH---HHHH--HTSSCHHHHHHHSSEEEEC
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH---HHHH--hCCcHHHHHhhcCeeEEec
Confidence 789999999999999999999999753 1245556655210 0000 1124688999974 4679
Q ss_pred CCCC--HHHHHHHHHHh------------c-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHH
Q psy1686 243 QPYQ--DEEIQAILKIR------------L-MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIR 304 (448)
Q Consensus 243 ~pys--~~eI~~IL~~R------------a-i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~ 304 (448)
.||. .+|+..+++.. . ++++++++|..++-.|++|...++++++...+. +..|+.+++.
T Consensus 173 PpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~ 246 (304)
T 1ojl_A 173 PSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYISERELP 246 (304)
T ss_dssp CCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSC
T ss_pred cCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhhh
Confidence 9999 56776665521 0 899999999999878999999999999987652 3467776664
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-10 Score=112.42 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=59.3
Q ss_pred CChhhhhhcc-cccCCCCCHHHHHHHHHH-------------h--c----CCHHHHHHHHHH--cCCCCHHHHHHHHHHH
Q psy1686 229 IPIDLLDRMV-IIPTQPYQDEEIQAILKI-------------R--L----MQTDGLRVLTKI--ALDTSLRYAIQLITTA 286 (448)
Q Consensus 229 Ip~~lLSR~~-ii~~~pys~~eI~~IL~~-------------R--a----i~deal~~La~~--a~~Gd~R~AL~lLe~a 286 (448)
++++|++|+- ++.|.|++.+++.+|+.. . . ++++++++|++. ..++++|..-++++++
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 6899999997 666999999999998873 1 1 899999999974 3477889999999988
Q ss_pred HHHhhhh---CC----CcccHHHHHHHHH
Q psy1686 287 SVVCRRR---KA----TEICMEDIRKVYA 308 (448)
Q Consensus 287 ~~~a~~~---~~----~~It~e~V~~~~~ 308 (448)
...+..+ .. -.||.++|++..+
T Consensus 319 ~~~~l~~~~~~~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 319 LLDTMYDLPSMEDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp HHHHHHSTTTCCCSEEEECHHHHTTCCSC
T ss_pred HHHHHHhcccccCCceeEEcHHHHhCcCC
Confidence 7543221 11 1477777766543
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-09 Score=109.66 Aligned_cols=207 Identities=18% Similarity=0.167 Sum_probs=136.7
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...|+++.|.+++.+. |+++|.. |. ..| +.++|||.+|||. |+ |...+|
T Consensus 175 ~p~~t~~digGl~~~k~~---l~e~v~~pl~~pe~f~~~g~~~prG--vLLyGPPGTGKTllAkAiA~e~~--------- 240 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEE---LVEAIVLPMKRADKFKDMGIRAPKG--ALMYGPPGTGKTLLARACAAQTN--------- 240 (434)
T ss_dssp SCSCCGGGSCSCHHHHHH---HHHHTHHHHHCSHHHHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT---------
T ss_pred CCCCChHhcCcHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCe--eEEECcCCCCHHHHHHHHHHHhC---------
Confidence 577779999999999876 4444321 11 124 7889999658875 55 333333
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
..|..+. .+.+.+.-.+|-...+|+....+... .|.|+
T Consensus 241 -----~~f~~v~----------------------------~s~l~~~~vGese~~ir~lF~~A~~~---------aP~Ii 278 (434)
T 4b4t_M 241 -----ATFLKLA----------------------------APQLVQMYIGEGAKLVRDAFALAKEK---------APTII 278 (434)
T ss_dssp -----CEEEEEE----------------------------GGGGCSSCSSHHHHHHHHHHHHHHHH---------CSEEE
T ss_pred -----CCEEEEe----------------------------hhhhhhcccchHHHHHHHHHHHHHhc---------CCeEE
Confidence 1333311 11122222233335667665554321 37999
Q ss_pred EEeccCCCC-----------H---HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLD-----------I---ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~-----------~---~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+. . ..++.|+..++.... . +||.|||. |..+.++|+. |+- .
T Consensus 279 fiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr------------p~~LD~AllRpGRfD~~ 346 (434)
T 4b4t_M 279 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR------------VDVLDPALLRSGRLDRK 346 (434)
T ss_dssp EEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS------------CCCCCTTTCSTTSEEEE
T ss_pred eecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------------chhcCHhHhcCCceeEE
Confidence 999999871 1 235667777765443 2 55566666 7889999988 774 7
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+|++.-. .+++. ++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 347 IEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp EECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 8888889988888887433 44443 7889999833388888888888888877677788999999988864
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-09 Score=112.00 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=79.0
Q ss_pred CeEEEEeccCCCCH-----------HHHHHHHHhhhhcCCC---eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-
Q psy1686 176 PGVLFIDEVHMLDI-----------ECFSFLNRALESEMSP---VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV- 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~p---i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~- 238 (448)
|++|||||||.|.. ..++.|++.++....+ ++|.+||. +..+++++++ |+.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~------------~~~Ld~al~r~gRf~~ 365 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------PNSIDPALRRFGRFDR 365 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC------------GGGBCGGGGSTTSSCE
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC------------ccccCHHHhCCCcCce
Confidence 68999999988743 6788999999965432 44455554 5668899999 553
Q ss_pred cccCCCCCHHHHHHHHHHhc----C-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh
Q psy1686 239 IIPTQPYQDEEIQAILKIRL----M-QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRR 293 (448)
Q Consensus 239 ii~~~pys~~eI~~IL~~Ra----i-~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~ 293 (448)
++.+.+++.++..+||+.++ + .+..+..+++.+.+-+.|+.-+++..|...|..+
T Consensus 366 ~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425 (489)
T ss_dssp EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999766 2 2334677888873447888878888888776543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-10 Score=121.49 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=126.2
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVT 105 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~ 105 (448)
+.+|.+..+|.. ++.+|||++..+. +.+++...+..+ +.++|||..|||+ ++..+.. +..
T Consensus 167 ~~~l~~~~~~~~-ld~iiG~~~~i~~---l~~~l~~~~~~~--vLL~G~pGtGKT~la~~la~~-------l~~------ 227 (758)
T 3pxi_A 167 ARDLTAIAKEDS-LDPVIGRSKEIQR---VIEVLSRRTKNN--PVLIGEPGVGKTAIAEGLAQQ-------IIN------ 227 (758)
T ss_dssp CCBHHHHTTSSC-SCCCCCCHHHHHH---HHHHHHCSSSCE--EEEESCTTTTTHHHHHHHHHH-------HHS------
T ss_pred HHHHHHHHhhCC-CCCccCchHHHHH---HHHHHhCCCCCC--eEEECCCCCCHHHHHHHHHHH-------Hhc------
Confidence 456666678887 7999999999765 566666666666 6799999558876 4422111 000
Q ss_pred CccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccC
Q psy1686 106 KDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVH 185 (448)
Q Consensus 106 ~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH 185 (448)
..+| .. .....+..+|+ .+ ...++....+++.+..+.. . .+.|||||
T Consensus 228 ~~~p--~~--------l~~~~~~~~~~-g~----------~~~G~~e~~l~~~~~~~~~----~-----~~~iLfiD--- 274 (758)
T 3pxi_A 228 NEVP--EI--------LRDKRVMTLDM-GT----------KYRGEFEDRLKKVMDEIRQ----A-----GNIILFID--- 274 (758)
T ss_dssp SCSC--TT--------TSSCCEECC---------------------CTTHHHHHHHHHT----C-----CCCEEEEC---
T ss_pred CCCC--hh--------hcCCeEEEecc-cc----------cccchHHHHHHHHHHHHHh----c-----CCEEEEEc---
Confidence 0011 00 00112223333 11 1134455677777665421 1 35899999
Q ss_pred CCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCC---CCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 186 MLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 186 ~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~---~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
...+.++.|+++++ .+.+.+|++||.+++ +.+++++++||.++.+.+++.+++.+||+..+
T Consensus 275 -~~~~~~~~L~~~l~-----------~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~ 342 (758)
T 3pxi_A 275 -AAIDASNILKPSLA-----------RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYE 342 (758)
T ss_dssp -C--------CCCTT-----------SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSG
T ss_pred -CchhHHHHHHHHHh-----------cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 55678888999888 356777888877763 56899999999999999999999999998432
Q ss_pred ------CCHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHh
Q psy1686 259 ------MQTDGLRVLTKIA-----LDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 259 ------i~deal~~La~~a-----~~Gd~R~AL~lLe~a~~~a 290 (448)
++++++..+++++ .....+.|+.+++.|...+
T Consensus 343 ~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 343 AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 8999999999885 1335689999999886544
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-10 Score=125.64 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=86.0
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCC--------------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSS--------------PHGI 229 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp--------------~~~I 229 (448)
++|||||||+.++.+.|+.|++.+|+.. ..+||++||.+...+.....++ ...+
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhC
Confidence 4899999999999999999999999763 1257777775321111100000 1235
Q ss_pred Chhhhhhc-ccccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q psy1686 230 PIDLLDRM-VIIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIAL--DTSLRYAIQLITTASVV 289 (448)
Q Consensus 230 p~~lLSR~-~ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a~--~Gd~R~AL~lLe~a~~~ 289 (448)
.++|++|| .++.|.|++.+++..|++... ++++++++|++.+. .|++|..-++++.+...
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 79999999 699999999999999887421 89999999999985 58999999998877543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-09 Score=103.92 Aligned_cols=191 Identities=19% Similarity=0.243 Sum_probs=115.2
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc-----------CCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE-----------EVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|...+++++|++.+.+. |++++.. |.-++..+.++||+..|||+ ++...+ ..+
T Consensus 10 ~~~~~~di~G~~~~~~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~-------~~~----- 74 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRE---LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN-------ECQ----- 74 (301)
T ss_dssp CCCCGGGSCSCHHHHHH---HHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH-------HTT-----
T ss_pred CCCCHHHhCCHHHHHHH---HHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH-------HhC-----
Confidence 55558999999999866 4555442 21222337899998558875 553311 111
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+.+. + +..-..|. -...++..+..+.. . .|+|+||||
T Consensus 75 -~~~i~v~~~---------------~----------l~~~~~g~---~~~~~~~~f~~a~~-----~----~p~il~iDE 116 (301)
T 3cf0_A 75 -ANFISIKGP---------------E----------LLTMWFGE---SEANVREIFDKARQ-----A----APCVLFFDE 116 (301)
T ss_dssp -CEEEEECHH---------------H----------HHHHHHTT---CTTHHHHHHHHHHH-----T----CSEEEEECS
T ss_pred -CCEEEEEhH---------------H----------HHhhhcCc---hHHHHHHHHHHHHh-----c----CCeEEEEEC
Confidence 133331111 1 10111122 12456665554421 1 369999999
Q ss_pred cCCCCHH--------------HHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCC
Q psy1686 184 VHMLDIE--------------CFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQ 243 (448)
Q Consensus 184 VH~L~~~--------------~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~ 243 (448)
+|.|... .++.|++.++.... . +||.+||. +..+.+++++ |+. ++.+.
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~------------~~~ld~al~r~gRf~~~i~i~ 184 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR------------PDIIDPAILRPGRLDQLIYIP 184 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC------------GGGSCGGGGSTTSSCEEEECC
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC------------ccccChHHhcCCccceEEecC
Confidence 9987543 36778888874322 2 34444443 5668899998 884 89999
Q ss_pred CCCHHHHHHHHHHhc----CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy1686 244 PYQDEEIQAILKIRL----MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVCR 291 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a~ 291 (448)
+.+.++..+|++... +. +..++.|+..+.+-+.++--++++.|...|.
T Consensus 185 ~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 185 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 237 (301)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998654 22 2235677777633377787788888776653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=106.64 Aligned_cols=207 Identities=17% Similarity=0.189 Sum_probs=136.3
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...++++.|.+.+.+. |+++|.- |- ..| +.++|||.+|||. |+ |...+| +
T Consensus 175 ~p~v~~~digGl~~~k~~---l~e~v~~pl~~p~~f~~~g~~~prG--vLL~GPPGtGKTllAkAiA~e~~--------~ 241 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRE---LREVIELPLKNPEIFQRVGIKPPKG--VLLYGPPGTGKTLLAKAVAATIG--------A 241 (437)
T ss_dssp SCSSCSGGGCSCHHHHHH---HHHHHHHHHHCHHHHHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT--------C
T ss_pred CCCCChhHhCChHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCe--EEEECCCCCcHHHHHHHHHHHhC--------C
Confidence 477779999999999876 4444432 11 125 7889999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+..+ .+.+.-.+|-...+|+....+.. ..|.|+
T Consensus 242 ------~~~~v~~s----------------------------~l~sk~~Gese~~ir~~F~~A~~---------~~P~Ii 278 (437)
T 4b4t_L 242 ------NFIFSPAS----------------------------GIVDKYIGESARIIREMFAYAKE---------HEPCII 278 (437)
T ss_dssp ------EEEEEEGG----------------------------GTCCSSSSHHHHHHHHHHHHHHH---------SCSEEE
T ss_pred ------CEEEEehh----------------------------hhccccchHHHHHHHHHHHHHHh---------cCCcee
Confidence 34332111 12222223323556665554421 147999
Q ss_pred EEeccCCCCH--------------HHHHHHHHhhhhcCC---CeEEEEecCceeEeeccccCCCCCCChhhhhh--c-cc
Q psy1686 180 FIDEVHMLDI--------------ECFSFLNRALESEMS---PVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--M-VI 239 (448)
Q Consensus 180 fIDEVH~L~~--------------~~f~~Llk~lEe~~~---pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~-~i 239 (448)
||||++.+.. ..++.|+..++.... .+||+|||. |..+.++|+.| + ..
T Consensus 279 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr------------p~~LDpAllRpGRfD~~ 346 (437)
T 4b4t_L 279 FMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR------------PDTLDPALLRPGRLDRK 346 (437)
T ss_dssp EEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS------------TTSSCTTTTSTTSEEEE
T ss_pred eeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC------------chhhCHHHhCCCcccee
Confidence 9999998831 235667777765443 266777777 88899999876 3 27
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+|++... .+++ -++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred eecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 8888888888888887433 3322 27888998833388888888888888876677778999999988864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=106.29 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=136.8
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...|+++.|.+++.++ |+++|.- |. -.| +.++|||.+|||. |+ |..++| +
T Consensus 176 ~p~v~~~DIgGld~~k~~---L~e~v~~Pl~~pe~f~~~Gi~~prG--vLLyGPPGTGKTlLAkAiA~e~~--------~ 242 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQE---IKESVELPLTHPELYEEMGIKPPKG--VILYGAPGTGKTLLAKAVANQTS--------A 242 (437)
T ss_dssp SCCCCGGGTCSCHHHHHH---HHHHHHHHHHCCHHHHHHTCCCCSE--EEEESSTTTTHHHHHHHHHHHHT--------C
T ss_pred CCCCcceecCcHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCCC--CceECCCCchHHHHHHHHHHHhC--------C
Confidence 477779999999999877 4444432 11 124 7889999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+- .+.+.+.-.+|--..+|+....+.. ..|.|+
T Consensus 243 ------~fi~v~----------------------------~s~l~sk~vGesek~ir~lF~~Ar~---------~aP~II 279 (437)
T 4b4t_I 243 ------TFLRIV----------------------------GSELIQKYLGDGPRLCRQIFKVAGE---------NAPSIV 279 (437)
T ss_dssp ------EEEEEE----------------------------SGGGCCSSSSHHHHHHHHHHHHHHH---------TCSEEE
T ss_pred ------CEEEEE----------------------------HHHhhhccCchHHHHHHHHHHHHHh---------cCCcEE
Confidence 343311 1112222223333556666655421 147999
Q ss_pred EEeccCCCCH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLDI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+.. ..++.|+..++.... . ++|+|||. +..+.++|+. |+- .
T Consensus 280 fiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr------------pd~LDpALlRpGRfD~~ 347 (437)
T 4b4t_I 280 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK------------IETLDPALIRPGRIDRK 347 (437)
T ss_dssp EEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC------------STTCCTTSSCTTTEEEE
T ss_pred EEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC------------hhhcCHHHhcCCceeEE
Confidence 9999998821 235556655554332 2 56666666 7889999996 774 7
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+||+... +++++ ++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 348 I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 348 ILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 8888889988888987543 44443 7889999834488888889998988887677788999999988864
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=106.15 Aligned_cols=207 Identities=16% Similarity=0.156 Sum_probs=136.3
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------C--CCCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------E--VVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~--ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
+|.-.|+++.|.+++.+. |+++|.- | --.| +.++|||.+|||. |+ |..++| +
T Consensus 203 ~P~vt~~DIgGl~~~k~~---L~e~V~~pl~~pe~f~~~Gi~pprG--ILLyGPPGTGKTlLAkAiA~e~~--------~ 269 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEK---LREVVELPLLSPERFATLGIDPPKG--ILLYGPPGTGKTLCARAVANRTD--------A 269 (467)
T ss_dssp SCSCCCSSCTTCHHHHHH---HHHHTHHHHHCHHHHHHHTCCCCSE--EEECSCTTSSHHHHHHHHHHHHT--------C
T ss_pred CCCCCHHHhccHHHHHHH---HHHHHHHHhcCHHHHHHCCCCCCCc--eEeeCCCCCcHHHHHHHHHhccC--------C
Confidence 577779999999999876 4444431 2 1225 7789999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+.. +.+.+.-.+|--..+|+....+... .|.|+
T Consensus 270 ------~fi~vs~----------------------------s~L~sk~vGesek~ir~lF~~Ar~~---------aP~II 306 (467)
T 4b4t_H 270 ------TFIRVIG----------------------------SELVQKYVGEGARMVRELFEMARTK---------KACII 306 (467)
T ss_dssp ------EEEEEEG----------------------------GGGCCCSSSHHHHHHHHHHHHHHHT---------CSEEE
T ss_pred ------CeEEEEh----------------------------HHhhcccCCHHHHHHHHHHHHHHhc---------CCceE
Confidence 3333111 1112222223235677666655321 37999
Q ss_pred EEeccCCCCH--------------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLDI--------------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~~--------------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+.. ..++.|+..++.... + ++|.|||+ +..+.++|+. |+- .
T Consensus 307 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNr------------pd~LDpALlRpGRFD~~ 374 (467)
T 4b4t_H 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNR------------PNTLDPALLRPGRIDRK 374 (467)
T ss_dssp EEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSC------------TTSBCHHHHSTTTCCEE
T ss_pred eecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCC------------cccCChhhhccccccEE
Confidence 9999998831 234555555554332 2 55566666 7889999986 774 8
Q ss_pred ccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.+..-+.++-.+||+... ++++ -++.||+.+.+-+.++--++...|+..|..++...|+.+|+.+++..
T Consensus 375 I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 375 VEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 8888889998888887543 4333 27789999833488888888888888876677788999999988864
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-09 Score=104.57 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=90.1
Q ss_pred CeEEEEeccCCCC------HHHHHHHHHhhhhcC-----CCe-EEEEecCceeEeeccccCCCCCCC---hhhhhhcc-c
Q psy1686 176 PGVLFIDEVHMLD------IECFSFLNRALESEM-----SPV-VITATNRGVTKIRGTAYSSPHGIP---IDLLDRMV-I 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~------~~~f~~Llk~lEe~~-----~pi-~IlaT~~~i~lI~~Ttenp~~~Ip---~~lLSR~~-i 239 (448)
+.|+||||+|.++ .+.++.|.+.+++.. .++ +|++|+.. .-...+. +.+.+|+. .
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~---------~~~~~l~~~~~~~~~~~~~~ 209 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDV---------RALSYMREKIPQVESQIGFK 209 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEET---------HHHHHHHHHCHHHHTTCSEE
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccc---------cHHHHHhhhcchhhhhcCCe
Confidence 5799999999985 377788888887654 343 33344320 0000111 33445532 4
Q ss_pred ccCCCCCHHHHHHHHHHhc--------CCHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKIRL--------MQTDGLRVLTKIALD------TSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~Ra--------i~deal~~La~~a~~------Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
+.|.||+.+|+.+++..++ ++++++..|++.+ . |++|++++++..+...+..++...|+.+++..
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 8999999999999997553 7899999999999 7 99999999999987777655666899999987
Q ss_pred HHHH
Q psy1686 306 VYAL 309 (448)
Q Consensus 306 ~~~l 309 (448)
++..
T Consensus 289 ~~~~ 292 (412)
T 1w5s_A 289 AVSE 292 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-10 Score=99.43 Aligned_cols=176 Identities=18% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~ 104 (448)
+.++.+.++|.. +++++|++...+. +.+.+..+.-.+ +.++|++..|||+ ++ +....... .+.
T Consensus 9 ~~~l~~~~~~~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~~~~~~~~~---~~~------ 73 (195)
T 1jbk_A 9 TIDLTERAEQGK-LDPVIGRDEEIRR---TIQVLQRRTKNN--PVLIGEPGVGKTAIVEGLAQRIING---EVP------ 73 (195)
T ss_dssp EEEHHHHHHTTC-SCCCCSCHHHHHH---HHHHHTSSSSCE--EEEECCTTSCHHHHHHHHHHHHHHT---CSC------
T ss_pred hHHHHHHHhhcc-ccccccchHHHHH---HHHHHhcCCCCc--eEEECCCCCCHHHHHHHHHHHHHhC---CCc------
Confidence 345666778887 7999999987654 566666654333 7899998558876 33 22111100 000
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
..+ .| . -+..+++.++- .+. ....+..+.+..........+ .+.|+||||+
T Consensus 74 ~~~----~~----~--~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDe~ 124 (195)
T 1jbk_A 74 EGL----KG----R--RVLALDMGALV-------------AGA--KYRGEFEERLKGVLNDLAKQE----GNVILFIDEL 124 (195)
T ss_dssp GGG----TT----C--EEEEECHHHHH-------------TTT--CSHHHHHHHHHHHHHHHHHST----TTEEEEEETG
T ss_pred hhh----cC----C--cEEEeeHHHHh-------------ccC--CccccHHHHHHHHHHHHhhcC----CCeEEEEeCH
Confidence 000 00 0 01112222211 110 011223333333332222222 2579999999
Q ss_pred CCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 185 HMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 185 H~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
|++. .+.+++|+..++... ..+|++|+.. .....+.+++++++||..+.+.+++.++..+||
T Consensus 125 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~i~~~~~~-------~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 125 HTMVGAGKADGAMDAGNMLKPALARGE-LHCVGATTLD-------EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp GGGTT------CCCCHHHHHHHHHTTS-CCEEEEECHH-------HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhccCcccchHHHHHHHHHhhccCC-eEEEEeCCHH-------HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 9995 445888888887532 2333333320 000113578999999999999999999988775
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-08 Score=93.66 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=85.7
Q ss_pred cCeEEEEeccCCCCH--------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---
Q psy1686 175 VPGVLFIDEVHMLDI--------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM--- 237 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~--- 237 (448)
.+.++|+||+|.+.. ..++.|+..++..... ...++.++|.+ |..+++++++|+
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--------~~~i~~a~t~~-p~~ld~~l~r~~rf~ 178 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVVMAATNR-PDILDPALLRPGRFD 178 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--------CCEEEEEEESC-GGGSCGGGGSTTSSC
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC--------CCEEEEEccCC-chhCCHHHcCCCcCC
Confidence 368999999987731 2234444444432211 12233334434 455999999854
Q ss_pred ccccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 238 VIIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 238 ~ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
..+.+.+.+.++..+|++..+ +++++ +.+|++.+ .| +.|+.-+++..|...|..++...|+.+++++++
T Consensus 179 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 179 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp EEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred eEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 378999999999999998544 55554 88899988 55 679999999999887765566789999998874
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-08 Score=102.86 Aligned_cols=207 Identities=18% Similarity=0.191 Sum_probs=133.7
Q ss_pred CccccccccccchhhhhhhHHHHHHHhc-----------CC--CCCCCcccccCCCCCcch-hh-hhhhccCccccccCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKE-----------EV--VMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDG 99 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~-----------~k--i~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~ 99 (448)
.|...++++.|.+++.+. |++.|.. |. -.| +.++|||.+|||. |+ |...+| +
T Consensus 166 ~p~v~~~digGl~~~k~~---l~e~v~~pl~~p~~~~~~g~~~prG--iLL~GPPGtGKT~lakAiA~~~~--------~ 232 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQE---IREAVELPLVQADLYEQIGIDPPRG--VLLYGPPGTGKTMLVKAVANSTK--------A 232 (428)
T ss_dssp SCSCCGGGSCSCHHHHHH---HHHHHHHHHHCHHHHHHHCCCCCCE--EEEESCTTTTHHHHHHHHHHHHT--------C
T ss_pred CCCCCHHHhccHHHHHHH---HHHHHHHHHhCHHHHHhCCCCCCce--EEEECCCCCCHHHHHHHHHHHhC--------C
Confidence 477779999999999876 4444431 11 114 7889999658875 55 333333 1
Q ss_pred CccCCCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEE
Q psy1686 100 WLADVTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVL 179 (448)
Q Consensus 100 ~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VL 179 (448)
.|..+.. +.+.+.-.+|-...||+....+... .|.|+
T Consensus 233 ------~~~~v~~----------------------------~~l~~~~~Ge~e~~ir~lF~~A~~~---------aP~Ii 269 (428)
T 4b4t_K 233 ------AFIRVNG----------------------------SEFVHKYLGEGPRMVRDVFRLAREN---------APSII 269 (428)
T ss_dssp ------EEEEEEG----------------------------GGTCCSSCSHHHHHHHHHHHHHHHT---------CSEEE
T ss_pred ------CeEEEec----------------------------chhhccccchhHHHHHHHHHHHHHc---------CCCee
Confidence 3433111 1112222233335677766554321 37999
Q ss_pred EEeccCCCC--------------HHHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-c
Q psy1686 180 FIDEVHMLD--------------IECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-I 239 (448)
Q Consensus 180 fIDEVH~L~--------------~~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-i 239 (448)
||||++.+. ...++.|+..++.... . +||+|||. +..+.++|+. |+- .
T Consensus 270 fiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~------------~~~LD~AllRpGRfd~~ 337 (428)
T 4b4t_K 270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR------------ADTLDPALLRPGRLDRK 337 (428)
T ss_dssp EEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC------------SSSCCHHHHSSSSEEEE
T ss_pred echhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC------------hhhcChhhhcCCcceEE
Confidence 999998762 1246667777775433 2 56666666 7889999997 664 6
Q ss_pred ccCCCC-CHHHHHHHHHHhc----CCHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 240 IPTQPY-QDEEIQAILKIRL----MQTDG-LRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 240 i~~~py-s~~eI~~IL~~Ra----i~dea-l~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|.|..+ +.++-..|++.-. +++++ ++.||+.+.+-+.++--++...|+..|..++...|+.+|+++++..
T Consensus 338 I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 338 IEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp EECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 778544 6666667776433 44443 7889999833488888888988988887677788999999998864
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=91.65 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=84.8
Q ss_pred cCeEEEEeccCCCC-----------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccc
Q psy1686 175 VPGVLFIDEVHMLD-----------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VII 240 (448)
Q Consensus 175 ~~~VLfIDEVH~L~-----------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii 240 (448)
.+.++|+||||.+. .+....++..+.+-... ......++.+++.+ |..+++++++|+ ..+
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg-----~~~~~~i~~a~t~~-p~~ld~~l~r~~rf~~~i 205 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-----EKDTAIVVMAATNR-PDILDPALLRPGRFDRQI 205 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC-----CTTCCEEEEEEESC-TTSSCHHHHSTTSSCCEE
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC-----CCCCCEEEEEecCC-chhCCHhHcCCCcCCeEE
Confidence 36899999998762 22233444443321110 01112233344444 455999999844 378
Q ss_pred cCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 241 PTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.+.+++.++..+||+..+ +++++ +.+|+... .| +.|+.-++++.|...|..++...|+.+|+++++
T Consensus 206 ~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred EeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999998654 55554 88899888 66 558888999999887765566789999998874
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-08 Score=102.73 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred CeEEEEeccCCCCHH------------HHHHHHHhhhhcCC--CeEEEEecCceeEeecc---ccCCCCCCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIE------------CFSFLNRALESEMS--PVVITATNRGVTKIRGT---AYSSPHGIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~------------~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~T---tenp~~~Ip~~lLSR~~ 238 (448)
.+++|+||++-+... .|++|++.+|.... +. +--.+..+.+|.+. ..||.. +.++|++|+-
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~~~~d-lipel~~R~~ 328 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVARPSD-LIPELQGRLP 328 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSCCGGG-SCHHHHTTCC
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccCChhh-cchHHhcccc
Confidence 379999999988542 78899999996321 11 11123344444332 235444 4578999997
Q ss_pred c-ccCCCCCHHHHHHHHHH--h-------c----------CCHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHH-h
Q psy1686 239 I-IPTQPYQDEEIQAILKI--R-------L----------MQTDGLRVLTKIA-------LDTSLRYAIQLITTASVV-C 290 (448)
Q Consensus 239 i-i~~~pys~~eI~~IL~~--R-------a----------i~deal~~La~~a-------~~Gd~R~AL~lLe~a~~~-a 290 (448)
+ +.|.+|+.+|+..|+.. + . ++++|+..|++.| .++++|..-+.++.+..- +
T Consensus 329 i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~ 408 (444)
T 1g41_A 329 IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 408 (444)
T ss_dssp EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHH
Confidence 5 89999999999999941 1 1 9999999999974 357999999998876532 1
Q ss_pred hh----hC-CCcccHHHHHHHHHHh
Q psy1686 291 RR----RK-ATEICMEDIRKVYALF 310 (448)
Q Consensus 291 ~~----~~-~~~It~e~V~~~~~lf 310 (448)
.. .+ ...||.++|++.++-.
T Consensus 409 ~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 409 FSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred hhccccCCCeEEEeHHHHHHhcCcc
Confidence 11 11 1358999998877643
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=108.16 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=87.5
Q ss_pred cCeEEEEeccCCCCH--------------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--
Q psy1686 175 VPGVLFIDEVHMLDI--------------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-- 238 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~--------------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-- 238 (448)
.|+++||||||.+.. ..++.|+..++..... ...++.++|.+ |..+.+++++|+.
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--------~~viviAatn~-p~~LD~aLlr~gRfd 193 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVVMAATNR-PDILDPALLRPGRFD 193 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--------CCCEEEECCSC-GGGSCTTTSSTTSSC
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--------ccEEEEEecCC-hhhcCcccccccccc
Confidence 468999999998842 2334455555432211 11122222223 4448889998553
Q ss_pred -cccCCCCCHHHHHHHHHHhc----CCHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 239 -IIPTQPYQDEEIQAILKIRL----MQTDG-LRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 239 -ii~~~pys~~eI~~IL~~Ra----i~dea-l~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.+.+.+.+.++..+||+..+ +++++ +.+|++.. .| +.|+.-+++..|...|..++...|+.+|+++++...
T Consensus 194 r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t-~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 194 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp CEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTS-CSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 78899999999999998654 55554 78888888 66 559999999999887765566789999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-08 Score=89.23 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=88.8
Q ss_pred CCCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh-hhhhccCccccccCCCccCC
Q psy1686 27 GLGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK-ISTATGREEEPDYDGWLADV 104 (448)
Q Consensus 27 glgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~-I~~~~gk~~a~~~d~~~~~~ 104 (448)
+.+|.+.++|.. +++++|++...+. +.+.+..+.-.+ +.++||+..|||+ ++ +..... .
T Consensus 9 ~~~l~~~~~~~~-~~~~~g~~~~~~~---l~~~l~~~~~~~--vll~G~~G~GKT~la~~~~~~~~--------~----- 69 (187)
T 2p65_A 9 SRDLTALARAGK-LDPVIGRDTEIRR---AIQILSRRTKNN--PILLGDPGVGKTAIVEGLAIKIV--------Q----- 69 (187)
T ss_dssp EEEHHHHHHTTC-SCCCCSCHHHHHH---HHHHHTSSSSCE--EEEESCGGGCHHHHHHHHHHHHH--------T-----
T ss_pred HHHHHHHHhccc-cchhhcchHHHHH---HHHHHhCCCCCc--eEEECCCCCCHHHHHHHHHHHHH--------h-----
Confidence 445666778887 7999999987654 566666654434 7899998448875 33 211111 0
Q ss_pred CCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEecc
Q psy1686 105 TKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEV 184 (448)
Q Consensus 105 ~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEV 184 (448)
... |... .. . -+..+++.++.. +. .......+.+..........+ .+.||||||+
T Consensus 70 -~~~--~~~~-~~-~-~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDe~ 124 (187)
T 2p65_A 70 -GDV--PDSL-KG-R-KLVSLDLSSLIA-------------GA--KYRGDFEERLKSILKEVQDAE----GQVVMFIDEI 124 (187)
T ss_dssp -TCS--CTTT-TT-C-EEEEECHHHHHH-------------HC--CSHHHHHHHHHHHHHHHHHTT----TSEEEEETTG
T ss_pred -cCC--cchh-cC-C-eEEEEeHHHhhc-------------CC--CchhHHHHHHHHHHHHHHhcC----CceEEEEeCH
Confidence 000 0000 00 0 011122222111 00 000222223333322222222 2579999999
Q ss_pred CCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC---CCCCChhhhhhcccccCCCCC
Q psy1686 185 HMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS---PHGIPIDLLDRMVIIPTQPYQ 246 (448)
Q Consensus 185 H~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp---~~~Ip~~lLSR~~ii~~~pys 246 (448)
|++. .+.+++|...+++ ..+.+|.+|+..+ ...+++++++||..+.+.+.+
T Consensus 125 ~~l~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 125 HTVVGAGAVAEGALDAGNILKPMLAR-----------GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp GGGSSSSSSCTTSCCTHHHHHHHHHT-----------TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHhcccccccccchHHHHHHHHHHhc-----------CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 9997 6778888888875 2233344443222 145789999999888877653
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=8.3e-08 Score=99.70 Aligned_cols=103 Identities=26% Similarity=0.485 Sum_probs=74.6
Q ss_pred cccccccccccCchhhHHHHHHHHhcchhhHHHhhhcccccc---ccccC----CCCCCChHHHHHHHHHHHHHHHhccc
Q psy1686 340 TKMEVDKFVQCPDGELQKRKTVVHTVTLHEIDVINSRTHGFL---ALFAG----DTGEITPEVREQISAKVTEWREEGHS 412 (448)
Q Consensus 340 ~~lE~e~~v~lp~g~v~k~ke~v~~vTLhdlD~~na~~~g~~---~l~~~----~~~EI~~e~R~~i~~~v~~~i~~g~a 412 (448)
++.+...++++|++++++++++++.+++||+|.++++++|+. +++.+ ...+|..++|+++++.+++|.++|++
T Consensus 213 fd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~ 292 (456)
T 2c9o_A 213 FDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIA 292 (456)
T ss_dssp TSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------------------------CHHHHHHHHHHHTTSE
T ss_pred cCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 444556789999999999999999999999999999998732 23333 46799999999999999999999999
Q ss_pred eeechhh------------hhhhhhhhhccCceeEEeccccc
Q psy1686 413 EKNRVKL------------TMFLRGLIEGTVTAKTLSSPNKL 442 (448)
Q Consensus 413 elv~~~~------------~~~l~~~~e~~~~~~~~~~~n~~ 442 (448)
+++|+|+ +.+|.+++|....|++|++||.+
T Consensus 293 ~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~ 334 (456)
T 2c9o_A 293 ELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRG 334 (456)
T ss_dssp EEEECEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCS
T ss_pred cccceEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCc
Confidence 9999977 99999999999999888899875
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.5e-06 Score=87.45 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=94.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhc---------CCCeEEEEecCceeEeeccccCC-----CCCCChhhhhhc-ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESE---------MSPVVITATNRGVTKIRGTAYSS-----PHGIPIDLLDRM-VII 240 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~---------~~pi~IlaT~~~i~lI~~Ttenp-----~~~Ip~~lLSR~-~ii 240 (448)
.+++||||+..++...+.+|+.++|+- +.+..++||..-+ . ++++ -+.+|.++|||+ +++
T Consensus 301 gGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~---~--~yd~~~s~~~~~Lp~alLDRFDLi~ 375 (506)
T 3f8t_A 301 GGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG---E--QWPSDPPIARIDLDQDFLSHFDLIA 375 (506)
T ss_dssp TSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC---C----CCSCGGGGCCSCHHHHTTCSEEE
T ss_pred CCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc---c--ccCCCCCccccCCChHHhhheeeEE
Confidence 489999999999999999999999974 3343333333311 1 1110 137999999999 555
Q ss_pred cCCC--------------CCHHHHHHHHHH-h---c---CCHHHHHHHHHH-----------------cCCCCHHHHHHH
Q psy1686 241 PTQP--------------YQDEEIQAILKI-R---L---MQTDGLRVLTKI-----------------ALDTSLRYAIQL 282 (448)
Q Consensus 241 ~~~p--------------ys~~eI~~IL~~-R---a---i~deal~~La~~-----------------a~~Gd~R~AL~l 282 (448)
.+.. ++.+++++.+.+ | + +++++.++|.++ +..-++|..+.+
T Consensus 376 i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaL 455 (506)
T 3f8t_A 376 FLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESV 455 (506)
T ss_dssp ETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHH
T ss_pred EecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHH
Confidence 4433 455666665542 3 1 999999888865 112388999999
Q ss_pred HHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 283 ITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 283 Le~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+..|...|.-+++..|+.+||+.+..++
T Consensus 456 iRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 456 ERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 9999888887888999999999999876
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6e-07 Score=91.14 Aligned_cols=112 Identities=24% Similarity=0.334 Sum_probs=83.2
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-C----eEEEEecCceeEeeccccCCCC-----CCChhhhhhccc--ccCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-P----VVITATNRGVTKIRGTAYSSPH-----GIPIDLLDRMVI--IPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-p----i~IlaT~~~i~lI~~Ttenp~~-----~Ip~~lLSR~~i--i~~~ 243 (448)
.+.|||||||.|+.+.|..|++.+|+... + .-+ .-.+-+|.+|+.++.. ....+|..|+.+ +.+.
T Consensus 223 ~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~---~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lP 299 (368)
T 3dzd_A 223 QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKI---EVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLP 299 (368)
T ss_dssp TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBE---ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECC
T ss_pred CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcce---eeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCC
Confidence 37899999999999999999999997421 0 000 0122355555555433 245689999875 5599
Q ss_pred CCCH--HHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 244 PYQD--EEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 244 pys~--~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
|+.+ +||..++.. +. ++++|+++|..+.--|+.|...|.++++...+
T Consensus 300 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 300 PLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred ChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 9988 788665542 11 99999999999988899999999999997765
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=75.05 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=41.6
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC--CCeEEEEecCceeEeeccccCCCCC---CChhhhhhcc--cccCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM--SPVVITATNRGVTKIRGTAYSSPHG---IPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~--~pi~IlaT~~~i~lI~~Ttenp~~~---Ip~~lLSR~~--ii~~~py 245 (448)
.+++||||||+++.+.|+.|++.+++.. ...+|.+||. ++... +..+|..|+. .+.+.|+
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~----------~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY----------AAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE----------CTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC----------CHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 3789999999999999999999999853 2345555554 22111 4567788853 4555554
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=77.07 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-------------HHHHHHHHhhhhcC--------------CC
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-------------ECFSFLNRALESEM--------------SP 205 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-------------~~f~~Llk~lEe~~--------------~p 205 (448)
..+|+....+.. +.... .+.||||||||.+.. ..++.|+..++... ..
T Consensus 82 ~~i~~~f~~a~~-~~~~~----~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v 156 (293)
T 3t15_A 82 KLIRQRYREAAE-IIRKG----NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARV 156 (293)
T ss_dssp HHHHHHHHHHHH-HHTTS----SCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCC
T ss_pred HHHHHHHHHHHH-HHhcC----CCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCc
Confidence 556665555431 11222 469999999988754 35688888886321 12
Q ss_pred eEEEEecCceeEeeccccCCCCCCChhhhh--hcccccCCCCCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHH
Q psy1686 206 VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMVIIPTQPYQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLR 277 (448)
Q Consensus 206 i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~ii~~~pys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R 277 (448)
.||++||. +..++++++. |+-.+-+.| +.++..+|++... ++.+.+..++.--.+.++.
T Consensus 157 ~vI~ttN~------------~~~ld~al~R~~R~d~~i~~P-~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 157 PIIVTGND------------FSTLYAPLIRDGRMEKFYWAP-TREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CEEEECSS------------CCC--CHHHHHHHEEEEEECC-CHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHH
T ss_pred EEEEecCC------------cccCCHHHhCCCCCceeEeCc-CHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHH
Confidence 44444444 6779999984 765322356 9999999987432 6666665555443244443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.2e-06 Score=71.62 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=41.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCC
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPY 245 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~py 245 (448)
++|||||||+|+.+.|+.|++.++..... .+|.+||.... ..-. ...+..+|..|+. .+.+.|+
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~---~~~~--~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLV---ELAA--SNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHH---HHHH--HSCCCHHHHHHHHHHEEECCCC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHH---HHHH--cCCCCHHHHHHhcCCEEeCCCC
Confidence 78999999999999999999999765443 55666664210 0000 1124577778753 4556665
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=88.95 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=114.2
Q ss_pred ccccccccccchhhhhhhHHHHHHHhc----C----CCC-CCC--cccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKE----E----VVM-VWP--CVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~----~----ki~-gpf--~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|.-.++++.|.+++.+. |+++|.- - ++. .|+ +.++|||.+|||+ ++-. |++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~---l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LArai-------A~elg~---- 264 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQ---IKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV-------ANETGA---- 264 (806)
T ss_dssp SSCCGGGCCSCCTTHHH---HHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHH-------HTTTTC----
T ss_pred CCCChhhhcCHHHHHHH---HHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHH-------HHHhCC----
Confidence 55568999999998766 4555432 1 111 022 6789999558875 5522 222221
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
.|+. |+-.+ +.+.-.+|--..+|+....+. .. .|.|+||||
T Consensus 265 --~~~~---------------v~~~~-------------l~sk~~gese~~lr~lF~~A~------~~---~PsIIfIDE 305 (806)
T 3cf2_A 265 --FFFL---------------INGPE-------------IMSKLAGESESNLRKAFEEAE------KN---APAIIFIDE 305 (806)
T ss_dssp --EEEE---------------EEHHH-------------HHSSCTTHHHHHHHHHHHHHT------TS---CSEEEEEES
T ss_pred --eEEE---------------EEhHH-------------hhcccchHHHHHHHHHHHHHH------Hc---CCeEEEEeh
Confidence 3332 11111 112222233356666665542 11 479999999
Q ss_pred cCCCCH-----------HHHHHHHHhhhhcCC--C-eEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCC
Q psy1686 184 VHMLDI-----------ECFSFLNRALESEMS--P-VVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 246 (448)
Q Consensus 184 VH~L~~-----------~~f~~Llk~lEe~~~--p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys 246 (448)
++.|.. ...+.|+..++.... + ++|.+||+ +..++++|+. |+- .|.+...+
T Consensus 306 iDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~------------~d~LD~ALrR~GRFd~~I~i~~Pd 373 (806)
T 3cf2_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------PNSIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp GGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS------------TTTSCTTTTSTTSSCEEEECCCCC
T ss_pred hcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC------------hhhcCHHHhCCcccceEEecCCCC
Confidence 999942 345556666655322 2 33444444 7779999988 774 78899999
Q ss_pred HHHHHHHHHHhc----CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL----MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVC 290 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a 290 (448)
.++=.+||+... .+ +--++.||+.+.+-+..+--++...|...|
T Consensus 374 ~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A 422 (806)
T 3cf2_A 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422 (806)
T ss_dssp HHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 998889988543 22 223778888874447777777777776655
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4.3e-05 Score=85.23 Aligned_cols=189 Identities=21% Similarity=0.230 Sum_probs=97.5
Q ss_pred ccccccccccchhhhhhhHHHHHHHhcC--------C--CC-CCCcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIKEE--------V--VM-VWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~~~--------k--i~-gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|...++++.|.+++.++ |.++|.-- + +. ..=+.++|||.+|||. |+.. |.+.+
T Consensus 472 p~v~w~diggl~~~k~~---l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkai-------A~e~~----- 536 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRE---LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI-------ANECQ----- 536 (806)
T ss_dssp CCCCSTTCCSCHHHHHH---HTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHH-------HHTTT-----
T ss_pred CCCCHHHhCCHHHHHHH---HHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHH-------HHHhC-----
Confidence 66668999999998765 44544321 0 10 0127789999558875 5522 22222
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
..|+.+- .+.+++.-.+|=-..||+....+.. ..|.|+||||
T Consensus 537 -~~f~~v~----------------------------~~~l~s~~vGese~~vr~lF~~Ar~---------~~P~IifiDE 578 (806)
T 3cf2_A 537 -ANFISIK----------------------------GPELLTMWFGESEANVREIFDKARQ---------AAPCVLFFDE 578 (806)
T ss_dssp -CEEEECC----------------------------HHHHHTTTCSSCHHHHHHHHHHHHT---------TCSEEEECSC
T ss_pred -CceEEec----------------------------cchhhccccchHHHHHHHHHHHHHH---------cCCceeechh
Confidence 2444410 1223333334444678877766521 1479999999
Q ss_pred cCCCCH--------------HHHHHHHHhhhhcCC--CeE-EEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCC
Q psy1686 184 VHMLDI--------------ECFSFLNRALESEMS--PVV-ITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQ 243 (448)
Q Consensus 184 VH~L~~--------------~~f~~Llk~lEe~~~--pi~-IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~ 243 (448)
|+.|.. ...+-|+.-++.... ++| |.|||+ |..|.+++|- |+- +|++.
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~------------p~~lD~AllRpgRfd~~i~v~ 646 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR------------PDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CC------------SSSSCHHHHSTTTSCCEEEC-
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC------------chhCCHhHcCCCcceEEEEEC
Confidence 999832 135667777775432 233 334444 6789999997 774 67777
Q ss_pred CCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Q psy1686 244 PYQDEEIQAILKIRL----MQTD-GLRVLTKIALDT-SLRYAIQLITTASVVC 290 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----i~de-al~~La~~a~~G-d~R~AL~lLe~a~~~a 290 (448)
.-+.++-.+|++... ++++ -++.||+.+ +| +..+--++...|...|
T Consensus 647 lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t-~g~SGadi~~l~~~A~~~a 698 (806)
T 3cf2_A 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT-NGFSGADLTEICQRACKLA 698 (806)
T ss_dssp ----CHHHHTTTTTSSCC--CCC-----------------CHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHHHH
Confidence 777777778876322 3322 367777776 43 5555455555665554
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=74.83 Aligned_cols=122 Identities=22% Similarity=0.286 Sum_probs=87.7
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC------------CCeEEEEecCceeEeeccccCCCCCCChhhhhhcc--ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM------------SPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~------------~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~ 241 (448)
.|.||||||+.|+.+.|..|++.+|+.. ...+|.|||....-.- . ....-.+|..|.. .+.
T Consensus 232 ~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~---~--~g~fr~dl~~rl~~~~i~ 306 (387)
T 1ny5_A 232 GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELV---K--EGKFREDLYYRLGVIEIE 306 (387)
T ss_dssp TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHH---H--TTSSCHHHHHHHTTEEEE
T ss_pred CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHH---H--cCCccHHHHHhhcCCeec
Confidence 3899999999999999999999999742 1135555554221000 0 1223578888874 567
Q ss_pred CCCCCH--HHHHHHHHH-------hc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHH
Q psy1686 242 TQPYQD--EEIQAILKI-------RL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRK 305 (448)
Q Consensus 242 ~~pys~--~eI~~IL~~-------Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~ 305 (448)
+.|+.. +||..+... +. +++++++.|..+.--|+.|..-|.+++|+..+. +..|+.+++..
T Consensus 307 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~ 382 (387)
T 1ny5_A 307 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE---GKFIDRGELSC 382 (387)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHH
T ss_pred CCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcH
Confidence 788875 677555442 11 899999999999889999999999999987762 34798888753
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=72.82 Aligned_cols=86 Identities=56% Similarity=0.796 Sum_probs=61.7
Q ss_pred HHHHhcchhhHHHhhhccccccccccCCCCCCChHHHHHHHHHHHHHHHhccceeechhh------------hhhhhhhh
Q psy1686 360 TVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGHSEKNRVKL------------TMFLRGLI 427 (448)
Q Consensus 360 e~v~~vTLhdlD~~na~~~g~~~l~~~~~~EI~~e~R~~i~~~v~~~i~~g~aelv~~~~------------~~~l~~~~ 427 (448)
+..+.+++|++|+.|+++.++..++.|..+++.+++|+.+++....|...|++...|+++ +..|++++
T Consensus 134 ~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~l 213 (368)
T 3uk6_A 134 GAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRAL 213 (368)
T ss_dssp ----CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHT
T ss_pred hccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHh
Confidence 557789999999999999998888888889999999999999999999999998777766 77889999
Q ss_pred hccCceeEEecccccccc
Q psy1686 428 EGTVTAKTLSSPNKLLKM 445 (448)
Q Consensus 428 e~~~~~~~~~~~n~~~~~ 445 (448)
|....|++++++|+++..
T Consensus 214 e~~~~~~~ii~t~~~~~~ 231 (368)
T 3uk6_A 214 ESDMAPVLIMATNRGITR 231 (368)
T ss_dssp TCTTCCEEEEEESCSEEE
T ss_pred hCcCCCeeeeecccceee
Confidence 999999999999976543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0037 Score=60.51 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=72.7
Q ss_pred cCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cc
Q psy1686 175 VPGVLFIDEVHMLDI-----------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-II 240 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii 240 (448)
.|.++|+||++.+.. ...+.++..+..... ....++.++|.+ |.-+.++++. |+- .|
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--------~~~~i~ia~tn~-p~~LD~al~r~gRfd~~i 173 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--------RQQVFIMAATNR-PDIIDPAILRPGRLDKTL 173 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--------TTCEEEEEEESC-GGGSCHHHHSTTSSCEEE
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--------cCCEEEEeecCC-hhhCCHhhcCcccCCeEE
Confidence 468999999998732 122333333322111 112233333333 5568888886 664 77
Q ss_pred cCCCCCHHHHHHHHHHhc-------CC-HHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHhhhh-----------CCCccc
Q psy1686 241 PTQPYQDEEIQAILKIRL-------MQ-TDGLRVLTKIA-LDT-SLRYAIQLITTASVVCRRR-----------KATEIC 299 (448)
Q Consensus 241 ~~~pys~~eI~~IL~~Ra-------i~-deal~~La~~a-~~G-d~R~AL~lLe~a~~~a~~~-----------~~~~It 299 (448)
.+...+.++-.+||+.-. .+ +--++.|+... ++| +..+--++...|...|..+ +...|+
T Consensus 174 ~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~ 253 (274)
T 2x8a_A 174 FVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVS 253 (274)
T ss_dssp ECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBC
T ss_pred EeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeec
Confidence 888889988888887422 22 22255666542 124 6777777777776655321 123588
Q ss_pred HHHHHHHHHH
Q psy1686 300 MEDIRKVYAL 309 (448)
Q Consensus 300 ~e~V~~~~~l 309 (448)
.+|.++++..
T Consensus 254 ~~df~~al~~ 263 (274)
T 2x8a_A 254 HKHFEEAFKK 263 (274)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8888888754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0036 Score=55.67 Aligned_cols=51 Identities=6% Similarity=-0.139 Sum_probs=34.4
Q ss_pred CCCCCcccccccccc-chhhhhhhHHHHHHHhcCCCC-CCCcccccCCCCCcch
Q psy1686 31 DDSLEPRKVSQGMVG-QLQARRAAGVVLGMIKEEVVM-VWPCVMCGRGKNPQKV 82 (448)
Q Consensus 31 ~~~~~p~~~~~~~VG-Q~~~r~a~~~l~~mI~~~ki~-gpf~~~~G~ei~GKtt 82 (448)
++++++.+ |+++++ ......+...+.+.+++-.+. |..+.++||+..||||
T Consensus 1 ~~r~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 1 AKRYWNAN-LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp CCSCTTCC-SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHH
T ss_pred CchhhhCc-cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHH
Confidence 46788887 799996 233334445567777665543 4567899998558986
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=57.52 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=31.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC---CCeEEEEecCceeEeeccccCCC--CCCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM---SPVVITATNRGVTKIRGTAYSSP--HGIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~---~pi~IlaT~~~i~lI~~Ttenp~--~~Ip~~lLSR~~ 238 (448)
+++|+|||++.++...+..|...++... .+++|++|+. .|. ..+ ++|.||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~----------~p~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY----------TPQQLVIR-EDLRTRMA 140 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS----------CTTTSSCC-HHHHHHGG
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC----------CHHHcccc-HHHHHHHh
Confidence 5899999999998755555555544321 2224445543 221 123 89999984
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0011 Score=82.19 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=57.1
Q ss_pred CeEEEEeccCCCCHH------HHHHHHHhhhhcC-----CCeEEEEecCceeEeeccccCCC-----CCCChhhhhhccc
Q psy1686 176 PGVLFIDEVHMLDIE------CFSFLNRALESEM-----SPVVITATNRGVTKIRGTAYSSP-----HGIPIDLLDRMVI 239 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~------~f~~Llk~lEe~~-----~pi~IlaT~~~i~lI~~Ttenp~-----~~Ip~~lLSR~~i 239 (448)
+.|+||||+||-..+ ...+|...+|..- ...++ +-.++.+|+|+ ||+ +.|++.|++||.+
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~--~~~~i~lIaA~--Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWV--TIERIHIVGAC--NPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEE--EEESEEEEEEE--CCTTSTTCCCCCHHHHTTEEE
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEE--EecCEEEEEec--CCCccCCCccCChhhhheeeE
Confidence 479999999997544 6777777776421 11111 11356777777 555 6899999999999
Q ss_pred ccCCCCCHHHHHHHHHH
Q psy1686 240 IPTQPYQDEEIQAILKI 256 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~ 256 (448)
|.+...+.+++..|+..
T Consensus 1413 i~i~~P~~~~l~~I~~~ 1429 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEI 1429 (2695)
T ss_dssp EECCCCTTTHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 99999999999999873
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0091 Score=57.48 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=63.7
Q ss_pred CeEEEEeccCCCCH-------HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCH
Q psy1686 176 PGVLFIDEVHMLDI-------ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~-------~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~ 247 (448)
+.|+||||+|.++. +....|....+....-.+|+++.... .+...-. ......++..|.. .+.+.||+.
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~-~l~~~l~--~~~~~~~l~~~~~~~i~l~pl~~ 205 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVG-LLHDFLK--ITDYESPLYGRIAGEVLVKPFDK 205 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHH-HHHHHHC--TTCTTSTTTTCCCEEEECCCCCH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHH-HHHHHHh--hcCCCCccccCccceeeCCCCCH
Confidence 47999999999864 55666666666542223443332210 0000000 0011123444553 899999999
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQL 282 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~l 282 (448)
+|..+++.... ++++++..+.+.+ +|.+++.-.+
T Consensus 206 ~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~~l~~~ 245 (350)
T 2qen_A 206 DTSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPGWLVVF 245 (350)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHH
Confidence 99999988532 7889999999998 9999754333
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=59.16 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=44.9
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccC---CCCCCChhhhhhc-ccccCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYS---SPHGIPIDLLDRM-VIIPTQPYQ 246 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tten---p~~~Ip~~lLSR~-~ii~~~pys 246 (448)
+.++||||+|+|+++.+++|.+..++ -.+++ +.|++.+ |+|..++.|++|+ .+.++++..
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~-~~~Vi----------~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic 140 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR-GIDVF----------CAGLDLTHKQNPFETTALLLSLADTVIKKKAVC 140 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT-TCEEE----------EEEESBCTTSCBCHHHHHHHHHCSEEEECCBCC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC-CCCEE----------EEeeccccccCCccchHHHHHHhhheEEeeeec
Confidence 48999999999999999999888875 22333 3334444 8999999999999 466666554
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.023 Score=54.62 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=61.1
Q ss_pred CeEEEEeccCCCCH----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc-ccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDI----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~-~ii~~~pys~~eI 250 (448)
+.|+||||+|.++. +...+|....+....-.+|+++...- .+... -+ ......++..|. ..+.+.||+.+|.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~-~l~~~-l~-~~~~~~~l~~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMG-LLYDY-LR-VEDPESPLFGRAFSTVELKPFSREEA 214 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHH-HHHHH-TT-TTCTTSTTTTCCCEEEEECCCCHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchH-HHHHH-Hh-ccCCCCccccCccceeecCCCCHHHH
Confidence 68999999999864 45666666666532223444433210 00000 00 001112345565 5889999999999
Q ss_pred HHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1686 251 QAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLIT 284 (448)
Q Consensus 251 ~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe 284 (448)
.+++..+. .+.+....+.+.+ +|.+.+.-.+..
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~i~~~t-~G~P~~l~~~~~ 251 (357)
T 2fna_A 215 IEFLRRGFQEADIDFKDYEVVYEKI-GGIPGWLTYFGF 251 (357)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHH-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHh-CCCHHHHHHHHH
Confidence 99987532 2222236788888 899987655443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.014 Score=52.59 Aligned_cols=56 Identities=5% Similarity=-0.164 Sum_probs=36.5
Q ss_pred cCCCCCCCCCccccccccccch-hhhhhhHHHHHHHhcCCCCC--CCcccccCCCCCcch
Q psy1686 26 RGLGLDDSLEPRKVSQGMVGQL-QARRAAGVVLGMIKEEVVMV--WPCVMCGRGKNPQKV 82 (448)
Q Consensus 26 ~glgL~~~~~p~~~~~~~VGQ~-~~r~a~~~l~~mI~~~ki~g--pf~~~~G~ei~GKtt 82 (448)
+..++...+++.+ |++++++. ....+...+.+.+++..-.+ +.+.++||+..|||+
T Consensus 11 ~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~ 69 (202)
T 2w58_A 11 QSMFMPREILRAS-LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69 (202)
T ss_dssp EEESSCGGGGCCC-TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHH
T ss_pred HHcCCCHHHHcCC-HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHH
Confidence 4456666677777 79999865 33334456677777653221 457899998558876
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.075 Score=54.78 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=28.1
Q ss_pred cccCccCCCCCCCCCccccccccc-cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch
Q psy1686 21 AHSHIRGLGLDDSLEPRKVSQGMV-GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 21 ~hsHi~glgL~~~~~p~~~~~~~V-GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt 82 (448)
.|+|-+ |.-+..||.+ ++++- +|..+... +.+.+.+++ +++.+.|++.+|||+
T Consensus 7 ~~~~~~--~~~~~~~p~~-~~~Ln~~Q~~av~~---~~~~i~~~~---~~~li~G~aGTGKT~ 60 (459)
T 3upu_A 7 HHHHSS--GLVPRGSHMT-FDDLTEGQKNAFNI---VMKAIKEKK---HHVTINGPAGTGATT 60 (459)
T ss_dssp ----------------CC-SSCCCHHHHHHHHH---HHHHHHSSS---CEEEEECCTTSCHHH
T ss_pred CCCccC--CCccccCCCc-cccCCHHHHHHHHH---HHHHHhcCC---CEEEEEeCCCCCHHH
Confidence 355544 4456789998 78888 88887644 566667654 256788888569986
|
| >1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.45 Score=37.13 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=48.8
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHhc
Q psy1686 250 IQAILKIRL---MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALFL 311 (448)
Q Consensus 250 I~~IL~~Ra---i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf~ 311 (448)
+..||+.-. +++++...|.+++ -||+.++|.-|..+|.-.|++.|+.+||+-+.+...
T Consensus 7 i~~iLk~~G~~~~~~~v~~~L~e~~----~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 7 IMSILKELNVQEYEPRVVNQLLEFT----FRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHTTCCCBCTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHCCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 567777322 9999999999998 599999999999999766888999999998887543
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.1 Score=51.25 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=34.5
Q ss_pred ccCCCCCCCCCccccccccccch-hhhhhhHHHHHHHhcCCC-CCCCcccccCCCCCcch
Q psy1686 25 IRGLGLDDSLEPRKVSQGMVGQL-QARRAAGVVLGMIKEEVV-MVWPCVMCGRGKNPQKV 82 (448)
Q Consensus 25 i~glgL~~~~~p~~~~~~~VGQ~-~~r~a~~~l~~mI~~~ki-~gpf~~~~G~ei~GKtt 82 (448)
++-.++...+++.+ |++|++.. ....+...+.+.+++..- .++.+.++||+..|||.
T Consensus 109 ~~~~~l~~~~~~~t-fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~ 167 (308)
T 2qgz_A 109 IQLVSLPKSYRHIH-LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSY 167 (308)
T ss_dssp EEEESSCGGGGSCC-GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHH
T ss_pred HHHcCCCHHHHhCC-HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHH
Confidence 34456666677777 79999633 222233445666665321 13457899998558875
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=87.68 E-value=0.52 Score=45.88 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=50.9
Q ss_pred eEEEEeccCCCCHHHHHHHHHhhh--------h------cCCCeEEEEecCceeEe-eccccCCCCCCChhhhhhccccc
Q psy1686 177 GVLFIDEVHMLDIECFSFLNRALE--------S------EMSPVVITATNRGVTKI-RGTAYSSPHGIPIDLLDRMVIIP 241 (448)
Q Consensus 177 ~VLfIDEVH~L~~~~f~~Llk~lE--------e------~~~pi~IlaT~~~i~lI-~~Ttenp~~~Ip~~lLSR~~ii~ 241 (448)
.|++.||..+.+ ++++.+-+.++ - ...+-+|+.||..+... .+... +...-++|.|||.+|+
T Consensus 150 ~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~--s~~~~~~L~sR~~~f~ 226 (267)
T 1u0j_A 150 MVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST--TFEHQQPLQDRMFKFE 226 (267)
T ss_dssp SEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE--ECTTHHHHHTTEEEEE
T ss_pred EEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc--chhhhHHHhhhEEEEE
Confidence 567778887764 66677777776 1 12345566777765332 22111 1234578999999999
Q ss_pred CC--------CCCHHHHHHHHH
Q psy1686 242 TQ--------PYQDEEIQAILK 255 (448)
Q Consensus 242 ~~--------pys~~eI~~IL~ 255 (448)
|. +++.++++..++
T Consensus 227 F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 227 LTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp CCSCCCTTSCCCCHHHHHHHHH
T ss_pred CCCcCCcccCCCCHHHHHHHHH
Confidence 99 899999988876
|
| >1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 | Back alignment and structure |
|---|
Probab=86.88 E-value=2.4 Score=32.58 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 246 QDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 246 s~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
+..-+..|++ ++ +++++...|.+.. -++..++++.|..+|...+++.|+.+||+-+.
T Consensus 8 p~a~v~Rl~r-~~g~~ris~~a~~~l~e~~----~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 8 PIAPVDRLIR-KAGAERVSEQAAKVLAEYL----EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp CHHHHHHHHH-HTTCSEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred ChHHHHHHHH-HcCcceeCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3445666776 44 9999999999987 47999999999999987788899999998765
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=84.70 E-value=0.83 Score=41.04 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=45.9
Q ss_pred CeEEEEeccC---CCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh--cccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVH---MLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR--MVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH---~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR--~~ii~~~pys~~eI 250 (448)
|.++++||++ .|+...+..+.+.+++. ...+|+++-. + . ...+...+.+| |.++.+.+.+.+++
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~--------~-h-~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPI--------R-D-VHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCS--------S-C-CSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEcc--------C-C-CchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 6899999975 45788899999999873 3335545421 0 0 12233567777 78999999887777
Q ss_pred HHHH
Q psy1686 251 QAIL 254 (448)
Q Consensus 251 ~~IL 254 (448)
..-|
T Consensus 169 ~~~l 172 (178)
T 1ye8_A 169 LEDI 172 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=83.41 E-value=5.1 Score=39.83 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=51.9
Q ss_pred cCeEEEEeccCCCC----HHHHHHHHHhhhhcCC--CeEEEEecCceeEeeccccCCCC-CCChhhhhhcccccCCCCCH
Q psy1686 175 VPGVLFIDEVHMLD----IECFSFLNRALESEMS--PVVITATNRGVTKIRGTAYSSPH-GIPIDLLDRMVIIPTQPYQD 247 (448)
Q Consensus 175 ~~~VLfIDEVH~L~----~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~Ttenp~~-~Ip~~lLSR~~ii~~~pys~ 247 (448)
.+.+++|||+|.+. ....++|.+.+.+.-. -.++++|-.--.+. ++.- ..-.++++.|...-+-+.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~-----~~~~~~~~~~il~n~~~~i~l~~~~ 336 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL-----APEVQRYGQALLDNPTYKLLLAQGE 336 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG-----STTTHHHHHHHHHSCSEEEECSCCH
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh-----ChhhHHHHHHHHHhhhhhheeCCCh
Confidence 37899999999995 3355556655554332 24555555411000 0000 00147888887444455667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc
Q psy1686 248 EEIQAILKIRLMQTDGLRVLTKIA 271 (448)
Q Consensus 248 ~eI~~IL~~Rai~deal~~La~~a 271 (448)
.++..+.+.-.++++..++|....
T Consensus 337 ~~~~~~~~~~~ls~~e~~~l~~~~ 360 (392)
T 4ag6_A 337 KDLEAITTLMNLSEAEHDLLVNAK 360 (392)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred hhHHHHHHHhCCCHHHHHhccCCC
Confidence 776655441118888887776654
|
| >1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... | Back alignment and structure |
|---|
Probab=81.12 E-value=4.2 Score=33.78 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++..-|..+++ ++ |++++.+.|+... -.+.-++++.|..+|+..+++.|+.+||..++..
T Consensus 30 ip~~~I~Rlar-~~G~~rIs~~a~~~l~~vl----e~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 30 ITKPAIRRLAR-RGGVKRISGLIYEETRGVL----KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp SCHHHHHHHHH-HTTCCEECTTHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 44556777777 44 8889988888876 3577788889988887677889999999988874
|
| >2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} | Back alignment and structure |
|---|
Probab=80.87 E-value=4.4 Score=33.67 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
++..-|..+++ ++ |++++.+.|+... -.+.-++++.|..+|+..+++.|+.+||..++..
T Consensus 30 ip~~~I~Rlar-~~G~~rIs~~a~~~l~~vl----e~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 30 ITKPAIRRLAR-RGGVKRISGLIYEEVRNVL----KTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp CCHHHHHHHHH-HTTCCEECTTHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 44446677776 44 8888888888776 2577788888988887677889999999988874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 448 | ||||
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 2e-04 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 0.002 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 0.004 |
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 10/129 (7%)
Query: 178 VLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM 237
V IDEVHML F+ L + LE V K+ T S + LD
Sbjct: 118 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 177
Query: 238 VIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATE 297
I + E + L++L + A + SLR A+ L A +
Sbjct: 178 QIRHQLEHILNEEH-----IAHEPRALQLLARAA-EGSLRDALSLTDQAIASGDGQ---- 227
Query: 298 ICMEDIRKV 306
+ + + +
Sbjct: 228 VSTQAVSAM 236
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 37.5 bits (87), Expect = 0.002
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 41/157 (26%)
Query: 176 PGVLFIDEVHML-----------DIECFSFLNRAL------ESEMSPVVITATNRGVTKI 218
P ++FIDE+ + + E LN+ L E + + VV+ ATNR
Sbjct: 102 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR----- 156
Query: 219 RGTAYSSPHGIPIDLL-----DRMVIIPTQPYQDEEIQAILKIRL--MQTDGLRVLTKIA 271
P + LL DR + I + + IL+I L +A
Sbjct: 157 -------PDILDPALLRPGRFDRQIAID--APDVKGREQILRIHARGKPLAEDVDLALLA 207
Query: 272 LDT---SLRYAIQLITTASVVCRRRKATEICMEDIRK 305
T L+ A+++ R +I M+D+ +
Sbjct: 208 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 244
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 36.7 bits (83), Expect = 0.004
Identities = 28/206 (13%), Positives = 50/206 (24%), Gaps = 22/206 (10%)
Query: 122 VHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFI 181
+ + + L+L TG + + E ++ +
Sbjct: 79 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVIL 138
Query: 182 DEVHMLD------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAY--SSPHGIPIDL 233
DE + E L R E E+ + IP
Sbjct: 139 DEFQSMLSSPRIAAEDLYTLLRVHE-EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVE 197
Query: 234 LDRMVIIPTQPYQDEEIQAILKIRLMQTDGLRVLTKIALDT-------------SLRYAI 280
+ Y+ E+ IL+ R V L+ S R AI
Sbjct: 198 SQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAI 257
Query: 281 QLITTASVVCRRRKATEICMEDIRKV 306
+ A + + + +RK
Sbjct: 258 VALKMACEMAEAMGRDSLSEDLVRKA 283
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 448 | |||
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.95 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.92 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.92 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.89 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.88 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.88 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.87 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.85 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.82 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.67 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.62 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.52 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.47 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.33 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.32 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.18 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.98 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.78 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 98.64 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.64 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.62 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.61 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 98.53 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.48 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 98.42 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.42 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 98.25 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 98.21 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.75 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 96.19 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.6 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.01 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.4 | |
| d1htaa_ | 68 | Archaeal histone {Archaeon Methanothermus fervidus | 91.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 83.87 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 83.73 | |
| d1ku5a_ | 66 | Archaeal histone {Archaeon (Pyrococcus horikoshii) | 82.85 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.57 |
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7e-28 Score=227.96 Aligned_cols=227 Identities=21% Similarity=0.273 Sum_probs=167.0
Q ss_pred CCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcc
Q psy1686 30 LDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDL 108 (448)
Q Consensus 30 L~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv 108 (448)
|+++.||++ |+++|||+++... |.++++++++++ .++++||+..|||+ |+..... +.+ .....
T Consensus 2 ~~~KyrP~~-~~dlig~~~~~~~---L~~~i~~~~~~~-~~Ll~Gp~G~GKtt~a~~~~~~-------l~~----~~~~~ 65 (239)
T d1njfa_ 2 LARKWRPQT-FADVVGQEHVLTA---LANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKG-------LNC----ETGIT 65 (239)
T ss_dssp HHHHTCCSS-GGGSCSCHHHHHH---HHHHHHTTCCCS-EEEEECSTTSSHHHHHHHHHHH-------HHC----TTCSC
T ss_pred chhhhCCCC-HHHccChHHHHHH---HHHHHHcCCCCe-eEEEECCCCCcHHHHHHHHHHH-------hcC----ccccc
Confidence 577899998 8999999999754 899999999876 35789999558876 5533221 110 01112
Q ss_pred ccCCCcccceeeeee--ccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 109 RCPDGELQKRKTVVH--TVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 109 ~~p~ge~~k~kei~~--~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
..|.+.+..|+++.. +++++++|..... .| +++|+.+.... .....-.++|+||||+|.
T Consensus 66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~i-~~ir~~~~~~~-----~~~~~~~~kviiIde~d~ 126 (239)
T d1njfa_ 66 ATPCGVCDNCREIEQGRFVDLIEIDAASRT-------------KV-EDTRDLLDNVQ-----YAPARGRFKVYLIDEVHM 126 (239)
T ss_dssp SSCCSCSHHHHHHHHTCCTTEEEEETTCSS-------------SH-HHHHHHHHSCC-----CSCSSSSSEEEEEETGGG
T ss_pred cCccccchHHHHHHcCCCCeEEEecchhcC-------------CH-HHHHHHHHHHH-----hccccCCCEEEEEECccc
Confidence 233343333333322 3455555544322 11 67777655431 222222358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
|+.++++.|++.+|+++.+ .||++||. +.++.++++|||++++|.|++.+++++++...+ +
T Consensus 127 l~~~~q~~Llk~lE~~~~~~~~il~tn~------------~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~ 194 (239)
T d1njfa_ 127 LSRHSFNALLKTLEEPPEHVKFLLATTD------------PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 194 (239)
T ss_dssp SCHHHHHHHHHHHHSCCTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred CCHHHHHHHHHHHhcCCCCeEEEEEcCC------------ccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCC
Confidence 9999999999999998765 78888887 788999999999999999999999999888655 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.|++.| +||+|+|+++|+.+.. .+...|+.++|+++++
T Consensus 195 ~~~~l~~i~~~s-~Gd~R~ain~l~~~~~----~~~~~I~~~~v~~~lg 238 (239)
T d1njfa_ 195 EPRALQLLARAA-EGSLRDALSLTDQAIA----SGDGQVSTQAVSAMLG 238 (239)
T ss_dssp CHHHHHHHHHHT-TTCHHHHHHHHHHHHH----HTTTSBCHHHHHHHHT
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHH----hCCCCcCHHHHHHHhC
Confidence 999999999999 9999999999998743 2445799999998864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.9e-25 Score=207.79 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=156.8
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
||..++.||++ ++++|||+++++. |.++++++++++ +.++|||..|||| |++.+.. +.+ +
T Consensus 3 ~pw~eKyrP~~-~~d~ig~~~~~~~---L~~~~~~~~~~~--~ll~Gp~G~GKTt~a~~la~~-------l~~------~ 63 (224)
T d1sxjb2 3 LPWVEKYRPQV-LSDIVGNKETIDR---LQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHE-------LLG------R 63 (224)
T ss_dssp CCHHHHTCCSS-GGGCCSCTHHHHH---HHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHH-------HHG------G
T ss_pred CchHhHhCCCC-HHHhcCCHHHHHH---HHHHHHcCCCCe--EEEECCCCCCchhhHHHHHHH-------Hhc------c
Confidence 78889999999 7999999998754 899999999988 8899999558876 6644221 110 0
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
+.. .+..++++...+ | . ..++..+..........+ .-.++|+||||+|+
T Consensus 64 ~~~---------------~~~~~~n~~~~~--~-------~-----~~i~~~~~~~~~~~~~~~--~~~~kviiiDe~d~ 112 (224)
T d1sxjb2 64 SYA---------------DGVLELNASDDR--G-------I-----DVVRNQIKHFAQKKLHLP--PGKHKIVILDEADS 112 (224)
T ss_dssp GHH---------------HHEEEECTTSCC--S-------H-----HHHHTHHHHHHHBCCCCC--TTCCEEEEEESGGG
T ss_pred ccc---------------cccccccccccC--C-------c-----eehhhHHHHHHHhhccCC--CcceEEEEEecccc
Confidence 000 011223333222 1 1 344444443322211111 12358999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++..++++|++.+|+++.+ .|++.|+. ...++++|+|||.+|+|+|++.+++..+|...+ +
T Consensus 113 ~~~~~~~~ll~~~e~~~~~~~~i~~~~~------------~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i 180 (224)
T d1sxjb2 113 MTAGAQQALRRTMELYSNSTRFAFACNQ------------SNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY 180 (224)
T ss_dssp SCHHHHHTTHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred cchhHHHHHhhhccccccceeeeeccCc------------hhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCC
Confidence 9999999999999998877 66666665 677999999999999999999999999988555 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
++++++.|++.| +||+|.||++|+.+... ...|+.++|.++.
T Consensus 181 ~~~~l~~I~~~s-~Gd~R~ai~~Lq~~~~~-----~~~i~~~~i~~~~ 222 (224)
T d1sxjb2 181 TNDGLEAIIFTA-EGDMRQAINNLQSTVAG-----HGLVNADNVFKIV 222 (224)
T ss_dssp CHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-----HSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHc-CCcHHHHHHHHHHHHHc-----CCCcCHHHHHHHh
Confidence 999999999999 99999999999987432 2479999998765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.2e-25 Score=208.61 Aligned_cols=217 Identities=16% Similarity=0.193 Sum_probs=157.2
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
+|+.++.||++ ++++|||+++.+ .|.++++++++++ +.++||+..|||+ +++..+ ++.. ..
T Consensus 2 ~pw~ekyrP~~-~~divg~~~~~~---~L~~~i~~~~~~~--lLl~Gp~G~GKttl~~~la~-------~l~~-----~~ 63 (227)
T d1sxjc2 2 LPWVEKYRPET-LDEVYGQNEVIT---TVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALAR-------EIYG-----KN 63 (227)
T ss_dssp CCHHHHTCCSS-GGGCCSCHHHHH---HHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHH-------HHHT-----TS
T ss_pred CchhhhhCCCC-HHHccCcHHHHH---HHHHHHHcCCCCe--EEEECCCCCChhHHHHHHHH-------Hhhc-----CC
Confidence 68889999998 799999999864 5899999999988 8899999559875 553322 1110 01
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
+.. ...|++.++.+ | + +..+.........+ ....-.++++||||+|.
T Consensus 64 ~~~----------------~~~e~~~~~~~--~-----------~-~~~~~~~~~~~~~~---~~~~~~~kiiiiDe~d~ 110 (227)
T d1sxjc2 64 YSN----------------MVLELNASDDR--G-----------I-DVVRNQIKDFASTR---QIFSKGFKLIILDEADA 110 (227)
T ss_dssp HHH----------------HEEEECTTSCC--S-----------H-HHHHTHHHHHHHBC---CSSSCSCEEEEETTGGG
T ss_pred Ccc----------------eeEEecccccC--C-----------e-eeeecchhhccccc---cccCCCeEEEEEecccc
Confidence 100 00111111111 1 1 22222222221111 11111247999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
++...+++|++++|++..+ +|+++|+. ++.++++++|||..++|+|++.+++.++|...+ +
T Consensus 111 ~~~~~~~~Ll~~le~~~~~~~~~~~~~~------------~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i 178 (227)
T d1sxjc2 111 MTNAAQNALRRVIERYTKNTRFCVLANY------------AHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 178 (227)
T ss_dssp SCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred chhhHHHHHHHHhhhcccceeeccccCc------------HHHhHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 9999999999999998765 67677765 778999999999999999999999999988544 9
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
++++++.|++.+ +||+|.|+++|+.+...+...+...||.++|+++++
T Consensus 179 ~~~~l~~i~~~s-~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 179 SPNAEKALIELS-NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226 (227)
T ss_dssp CHHHHHHHHHHH-TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCCCCCeeCHHHHHHHhC
Confidence 999999999999 999999999999876554434557899999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.4e-24 Score=197.87 Aligned_cols=227 Identities=13% Similarity=0.072 Sum_probs=153.7
Q ss_pred CCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCc
Q psy1686 29 GLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKD 107 (448)
Q Consensus 29 gL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~f 107 (448)
|+++++||++ ++++|||+++.+ .|++++++++.++ ..++||+..|||+ ++...+. +.. .+. ....+
T Consensus 1 ~w~~ky~P~~-~~diig~~~~~~---~l~~~i~~~~~~~--lll~Gp~G~GKTtl~~~i~~~--l~~--~~~---~~~~~ 67 (237)
T d1sxjd2 1 PWVEKYRPKN-LDEVTAQDHAVT---VLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKE--LYG--PDL---MKSRI 67 (237)
T ss_dssp CHHHHTCCSS-TTTCCSCCTTHH---HHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHH--HHH--HHH---HTTSE
T ss_pred CcchhhCCCC-HHHccCcHHHHH---HHHHHHHcCCCCe--EEEECCCCCChHHHHHHHHHH--HcC--Ccc---cccch
Confidence 5678899999 799999999864 5899999998877 8899999559976 4422111 000 000 00011
Q ss_pred cccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC
Q psy1686 108 LRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML 187 (448)
Q Consensus 108 v~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L 187 (448)
..+..+... .+....-.+-|.. ......... ..+. . ...+ ...|+||||+|+|
T Consensus 68 ~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~---~~~~----~-~~~~----~~~viiiDe~d~l 120 (237)
T d1sxjd2 68 LELNASDER-------GISIVREKVKNFA--------RLTVSKPSK---HDLE----N-YPCP----PYKIIILDEADSM 120 (237)
T ss_dssp EEECSSSCC-------CHHHHTTHHHHHH--------HSCCCCCCT---THHH----H-SCCC----SCEEEEETTGGGS
T ss_pred hheeccccc-------cchHHHHHHHHHh--------hhhhhhhhH---HHHh----h-cccc----CceEEEEeccccc
Confidence 111111100 0000000010100 000000000 0011 1 1111 2479999999999
Q ss_pred CHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------CC
Q psy1686 188 DIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------MQ 260 (448)
Q Consensus 188 ~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i~ 260 (448)
+..+++.|.+.++.+..+ .||++++. +.++++++.|||.+|+|+|++.+++.++|+..+ ++
T Consensus 121 ~~~~~~~l~~~~~~~~~~~~~i~~~~~------------~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~ 188 (237)
T d1sxjd2 121 TADAQSALRRTMETYSGVTRFCLICNY------------VTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCD 188 (237)
T ss_dssp CHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC
T ss_pred CHHHHHHHhhccccccccccccccccc------------cccccccccchhhhhccccccccccchhhhhhhhhhcCcCC
Confidence 999999999999998776 66666665 667899999999999999999999999998654 99
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhh-CCCcccHHHHHHHHH
Q psy1686 261 TDGLRVLTKIALDTSLRYAIQLITTASVVCRRR-KATEICMEDIRKVYA 308 (448)
Q Consensus 261 deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~-~~~~It~e~V~~~~~ 308 (448)
++++++|++.+ +||+|.|+++|+.+...+... .+..||.++|+++++
T Consensus 189 ~~~l~~ia~~s-~gd~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e~~g 236 (237)
T d1sxjd2 189 DGVLERILDIS-AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 236 (237)
T ss_dssp HHHHHHHHHHT-SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhcCCCCccCHHHHHHhhC
Confidence 99999999999 999999999999987766543 345799999999875
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=1.1e-21 Score=183.26 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=156.3
Q ss_pred CCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccC
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCP 111 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p 111 (448)
.|||++ |+++|||+|+.+....+.++.+.++-+-|.+.++|||..|||+ |++.+ +++.+ +|..+
T Consensus 2 ~~RP~~-~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la-------~~~~~------~~~~~- 66 (239)
T d1ixsb2 2 ALRPKT-LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIA-------HELGV------NLRVT- 66 (239)
T ss_dssp CCCCCS-GGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHH-------HHHTC------CEEEE-
T ss_pred CcCCCC-HHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH-------HHhCC------CeEec-
Confidence 379998 8999999999988777777666655555669999999559976 66542 22222 23321
Q ss_pred CCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHH
Q psy1686 112 DGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIEC 191 (448)
Q Consensus 112 ~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~ 191 (448)
|+. .... .......+ .+.. + ...|+||||+|.+++..
T Consensus 67 ----------------------~~~-------~~~~----~~~~~~~~----~~~~--~----~~~i~~iDe~~~~~~~~ 103 (239)
T d1ixsb2 67 ----------------------SGP-------AIEK----PGDLAAIL----ANSL--E----EGDILFIDEIHRLSRQA 103 (239)
T ss_dssp ----------------------ETT-------TCCS----HHHHHHHH----HTTC--C----TTCEEEEETGGGCCHHH
T ss_pred ----------------------cCC-------cccc----chhhHHHH----Hhhc--c----CCCeeeeecccccchhH
Confidence 110 0000 01111111 1111 1 24799999999999999
Q ss_pred HHHHHHhhhhcCC---------CeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----
Q psy1686 192 FSFLNRALESEMS---------PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL---- 258 (448)
Q Consensus 192 f~~Llk~lEe~~~---------pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra---- 258 (448)
++.|+..+|+... ...+...+..+.+|.+ +.+++...++.+.+||..+++.+++.+++.+++...+
T Consensus 104 ~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (239)
T d1ixsb2 104 EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA-TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 182 (239)
T ss_dssp HHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEE-ESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGC
T ss_pred HHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEee-ccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhC
Confidence 9999999997531 1223334444555544 4456777888999999999999999999999988544
Q ss_pred --CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 259 --MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 259 --i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+++++++.|++.+ +||+|+|+++|+.+..++...+...||.+++.+++..+
T Consensus 183 i~~~~~~l~~ia~~s-~gd~R~a~~~l~~~~~~a~~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 183 VRITEEAALEIGRRS-RGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 235 (239)
T ss_dssp CCBCHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHTTSCCSCBCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhh
Confidence 9999999999999 99999999999999887765566789999999988753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.88 E-value=2.1e-23 Score=194.07 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=154.7
Q ss_pred CCCCCCCCccccccccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 28 LGLDDSLEPRKVSQGMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 28 lgL~~~~~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
-|+.++++|++ ++++|||+++.+. |.++++++++++ +.++||+..|||+ +++.++ ++.+ + .
T Consensus 12 ~~w~~ky~P~~-~~diig~~~~~~~---l~~~i~~~~~~~--lll~Gp~G~GKTtla~~iak-------~l~~---~--~ 73 (231)
T d1iqpa2 12 KPWVEKYRPQR-LDDIVGQEHIVKR---LKHYVKTGSMPH--LLFAGPPGVGKTTAALALAR-------ELFG---E--N 73 (231)
T ss_dssp SCHHHHTCCCS-TTTCCSCHHHHHH---HHHHHHHTCCCE--EEEESCTTSSHHHHHHHHHH-------HHHG---G--G
T ss_pred chHHHHhCCCC-HHHccCcHHHHHH---HHHHHHcCCCCe--EEEECCCCCcHHHHHHHHHH-------HHHh---c--c
Confidence 36789999998 8999999999765 899999999877 8899999559876 664322 1110 0 0
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
+ ..+..|+++...+ |. +.+|+.+..........+ -.+.|+++||+|.
T Consensus 74 ~----------------~~~~~e~n~s~~~--~~------------~~~~~~~~~~~~~~~~~~---~~~~iilide~d~ 120 (231)
T d1iqpa2 74 W----------------RHNFLELNASDER--GI------------NVIREKVKEFARTKPIGG---ASFKIIFLDEADA 120 (231)
T ss_dssp H----------------HHHEEEEETTCHH--HH------------HTTHHHHHHHHHSCCGGG---CSCEEEEEETGGG
T ss_pred c----------------CCCeeEEecCccc--ch------------hHHHHHHHHHHhhhhccC---CCceEEeehhhhh
Confidence 0 0011122222111 11 344444443321111111 1468999999999
Q ss_pred CCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc------C
Q psy1686 187 LDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL------M 259 (448)
Q Consensus 187 L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra------i 259 (448)
+....++.|++.++++..+ .+|++|+. +..++.+++|||.++.|.|++..++..+|+..+ +
T Consensus 121 ~~~~~~~~ll~~l~~~~~~~~~i~~~n~------------~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i 188 (231)
T d1iqpa2 121 LTQDAQQALRRTMEMFSSNVRFILSCNY------------SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 188 (231)
T ss_dssp SCHHHHHHHHHHHHHTTTTEEEEEEESC------------GGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred cchhHHHHHhhhcccCCcceEEEeccCC------------hhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCC
Confidence 9999999999999999887 55566665 677999999999999999999999999998655 8
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 260 QTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 260 ~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
++++++.|++.+ +||+|.|+++|+.+.. ..+.|+.++|.++.
T Consensus 189 ~~~~l~~I~~~~-~gdiR~ai~~Lq~~~~-----~~~~it~e~v~~v~ 230 (231)
T d1iqpa2 189 TEEGLQAILYIA-EGDMRRAINILQAAAA-----LDKKITDENVFMVA 230 (231)
T ss_dssp CHHHHHHHHHHH-TTCHHHHHHHHHHHHT-----TCSEECHHHHHHHT
T ss_pred CHHHHHHHHHHc-CCCHHHHHHHHHHHHH-----cCCCcCHHHHHhhh
Confidence 999999999999 9999999999998743 34579999887653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=8.2e-22 Score=183.74 Aligned_cols=215 Identities=19% Similarity=0.199 Sum_probs=146.4
Q ss_pred CCCccccccccccchhhhhhhHHHHH-HHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCcccc
Q psy1686 33 SLEPRKVSQGMVGQLQARRAAGVVLG-MIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRC 110 (448)
Q Consensus 33 ~~~p~~~~~~~VGQ~~~r~a~~~l~~-mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~ 110 (448)
.|||++ ++++|||+++.+....+.+ ....++. .|.+.|+|||..|||+ |++. |+++++ +|..+
T Consensus 2 ~~RP~~-~~divGqe~~~~~l~~~i~~~~~~~~~-~~~~L~~GPpGtGKT~lA~~l-------a~~~~~------~~~~~ 66 (238)
T d1in4a2 2 FLRPKS-LDEFIGQENVKKKLSLALEAAKMRGEV-LDHVLLAGPPGLGKTTLAHII-------ASELQT------NIHVT 66 (238)
T ss_dssp TTSCSS-GGGCCSCHHHHHHHHHHHHHHHHHTCC-CCCEEEESSTTSSHHHHHHHH-------HHHHTC------CEEEE
T ss_pred CCCCCc-HHHcCChHHHHHHHHHHHHHHHhcCCC-CCeEEEECCCCCcHHHHHHHH-------HhccCC------Ccccc
Confidence 589998 8999999999877443332 2222221 2459999999558876 6654 233332 23321
Q ss_pred CCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHH
Q psy1686 111 PDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIE 190 (448)
Q Consensus 111 p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~ 190 (448)
...+. .. ..+++..+.. .+ ...++||||+|.+++.
T Consensus 67 ~~~~~------------------------------~~----~~~~~~~~~~-------~~----~~~~~~ide~~~~~~~ 101 (238)
T d1in4a2 67 SGPVL------------------------------VK----QGDMAAILTS-------LE----RGDVLFIDEIHRLNKA 101 (238)
T ss_dssp ETTTC------------------------------CS----HHHHHHHHHH-------CC----TTCEEEEETGGGCCHH
T ss_pred cCccc------------------------------cc----HHHHHHHHHh-------hc----cCCchHHHHHHHhhhH
Confidence 10000 00 0233332221 12 2478999999999999
Q ss_pred HHHHHHHhhhhcCCCeEEE---------EecCceeEeeccccCCCCCCChhhhhhcc-cccCCCCCHHHHHHHHHHhc--
Q psy1686 191 CFSFLNRALESEMSPVVIT---------ATNRGVTKIRGTAYSSPHGIPIDLLDRMV-IIPTQPYQDEEIQAILKIRL-- 258 (448)
Q Consensus 191 ~f~~Llk~lEe~~~pi~Il---------aT~~~i~lI~~Ttenp~~~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~Ra-- 258 (448)
.++.|+..+|+........ -....+++|.+|+.. -.+++++++||. ++.|++++.+++..+++..+
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (238)
T d1in4a2 102 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS--GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL 179 (238)
T ss_dssp HHHHHHHHHHTSCCCC---------------CCCEEEEEESCG--GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCC--ccccccceeeeeEEEEecCCCHHHHHHHHHHhhhh
Confidence 9999999999864321110 011223455555433 347899999986 78999999999999988555
Q ss_pred ----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 259 ----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 259 ----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+++++++.+++.+ +||+|+|+++|+.+...+...+...||.+.+++++..+
T Consensus 180 ~~~~~~~~~l~~i~~~s-~gd~R~ai~~l~~~~~~~~~~~~~~it~~~~~~al~~l 234 (238)
T d1in4a2 180 MDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234 (238)
T ss_dssp TTCCBCHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Confidence 8999999999999 99999999999998876655666789999999998753
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7.1e-22 Score=183.67 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=138.2
Q ss_pred cchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeee
Q psy1686 45 GQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVH 123 (448)
Q Consensus 45 GQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~ 123 (448)
+|+++. .-|.+++++++++|. ..++||+..|||+ ++..++ .+.+ .......|+|++..|+++..
T Consensus 6 w~~~~~---~~l~~~~~~~~l~h~-lLl~Gp~G~GKtt~a~~~a~-------~l~~----~~~~~~~~~~~~~~~~~i~~ 70 (207)
T d1a5ta2 6 WLRPDF---EKLVASYQAGRGHHA-LLIQALPGMGDDALIYALSR-------YLLC----QQPQGHKSCGHCRGCQLMQA 70 (207)
T ss_dssp GGHHHH---HHHHHHHHTTCCCSE-EEEECCTTSCHHHHHHHHHH-------HHTC----SSCBTTBCCSCSHHHHHHHH
T ss_pred ccHHHH---HHHHHHHHcCCcCeE-EEEECCCCCcHHHHHHHHHH-------hccc----ccccccccccccchhhhhhh
Confidence 455554 448899999999873 4689998548865 553322 2222 11223445677766655443
Q ss_pred c--cchhhhhhhccccccchhhhcCCCCCC-chHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 124 T--VTLHEIDVINSRTHGFLALFAGDTGEI-TPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 124 ~--vtLheiD~~nsr~~g~~a~~~~~~~eI-~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
. ..++++....+ ...| .+++|+.+... ......+ .++|++|||+|+++.+++++|+|++|
T Consensus 71 ~~~~~~~~~~~~~~------------~~~i~~~~ir~l~~~~-~~~~~~~----~~kviIide~d~l~~~a~n~Llk~lE 133 (207)
T d1a5ta2 71 GTHPDYYTLAPEKG------------KNTLGVDAVREVTEKL-NEHARLG----GAKVVWVTDAALLTDAAANALLKTLE 133 (207)
T ss_dssp TCCTTEEEECCCTT------------CSSBCHHHHHHHHHHT-TSCCTTS----SCEEEEESCGGGBCHHHHHHHHHHHT
T ss_pred ccccccchhhhhhc------------ccccccchhhHHhhhh-hhccccC----ccceEEechhhhhhhhhhHHHHHHHH
Confidence 2 12222211111 1111 26677665432 1111222 35899999999999999999999999
Q ss_pred hcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHcCCCCHHH
Q psy1686 201 SEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL-MQTDGLRVLTKIALDTSLRY 278 (448)
Q Consensus 201 e~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra-i~deal~~La~~a~~Gd~R~ 278 (448)
+|+.. .||+.|+. +.++.++++|||+.|+|.|++.+++.++|+... +++++++.+++.| +||+|+
T Consensus 134 ep~~~~~fIl~t~~------------~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~~~~~~~~~~~i~~~s-~Gs~r~ 200 (207)
T d1a5ta2 134 EPPAETWFFLATRE------------PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLS-AGSPGA 200 (207)
T ss_dssp SCCTTEEEEEEESC------------GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHT-TTCHHH
T ss_pred hhcccceeeeeecC------------hhhhhhhhcceeEEEecCCCCHHHHHHHHHHcCCCCHHHHHHHHHHc-CCCHHH
Confidence 99876 77788887 788999999999999999999999999999666 9999999999999 999999
Q ss_pred HHHHHH
Q psy1686 279 AIQLIT 284 (448)
Q Consensus 279 AL~lLe 284 (448)
||++|+
T Consensus 201 al~~le 206 (207)
T d1a5ta2 201 ALALFQ 206 (207)
T ss_dssp HHHTTS
T ss_pred HHHHhC
Confidence 999875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=6.1e-20 Score=171.17 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=89.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAIL 254 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL 254 (448)
..+++|||+|.++.+.++.|.+.+|++..+ .||++|+. +..++++++|||.+|+|.|++.+++.++|
T Consensus 132 ~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~------------~~~i~~~l~sR~~~i~~~~~~~~~~~~~l 199 (252)
T d1sxje2 132 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS------------MSPIIAPIKSQCLLIRCPAPSDSEISTIL 199 (252)
T ss_dssp CEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC------------SCSSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred ceEEEeccccccccccchhhhcccccccccccceeeecc------------ccchhhhhhcchheeeecccchhhHHHHH
Confidence 469999999999999999999999998876 57777776 78899999999999999999999999999
Q ss_pred HHhc-------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy1686 255 KIRL-------MQTDGLRVLTKIALDTSLRYAIQLITTASV 288 (448)
Q Consensus 255 ~~Ra-------i~deal~~La~~a~~Gd~R~AL~lLe~a~~ 288 (448)
+..+ .++++++.|++.+ +||+|.|++.|+.+..
T Consensus 200 ~~i~~~e~~~~~~~~~l~~i~~~s-~Gd~R~ai~~Lq~~~~ 239 (252)
T d1sxje2 200 SDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMAL 239 (252)
T ss_dssp HHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHTHHHH
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHc-CCcHHHHHHHHHHHHH
Confidence 8654 4689999999999 9999999999997754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.5e-16 Score=148.15 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=90.0
Q ss_pred cCeEEEEeccCCCCHHHHHHHHHhhhh---cCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFSFLNRALES---EMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ 251 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~~Llk~lEe---~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~ 251 (448)
.+.++++||++.++...+.++...++. ...|+++.+++. +.....++.+||..|+|.+++.+++.
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~------------~~~~~~~l~~~~~~i~f~~~~~~~i~ 190 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER------------NLPKMRPFDRVCLDIQFRRPDANSIK 190 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCT------------TSSTTGGGTTTSEEEECCCCCHHHHH
T ss_pred cceEEEeeeccccccchhhhhHHHhhhhcccccccccccccc------------cccccccccceeeeeeccccchhHHH
Confidence 358999999999998887777777764 333444333222 23345689999999999999999999
Q ss_pred HHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 252 AILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 252 ~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.+|+..+ +++++++.|++.+ +||+|.|++.|+.+... .+.|+.++|+++..
T Consensus 191 ~~l~~i~~~e~i~i~~~~l~~i~~~s-~GDiR~ai~~L~~~~~~-----~~~i~~~~~~~~~~ 247 (253)
T d1sxja2 191 SRLMTIAIREKFKLDPNVIDRLIQTT-RGDIRQVINLLSTISTT-----TKTINHENINEISK 247 (253)
T ss_dssp HHHHHHHHHHTCCCCTTHHHHHHHHT-TTCHHHHHHHHTHHHHH-----SSCCCTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-----CCCCCHHHHHHHhc
Confidence 9998654 9999999999999 99999999999876432 34688888877664
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=3e-16 Score=144.95 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=92.4
Q ss_pred hHHHHHHHhcCCCCCCCcccccCCCCCcch-hhhhhhccCccccccCCCccCCCCccccCCCcccceeeeeeccchhhhh
Q psy1686 53 AGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTKDLRCPDGELQKRKTVVHTVTLHEID 131 (448)
Q Consensus 53 ~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~fv~~p~ge~~k~kei~~~vtLheiD 131 (448)
...|.++|+++..++ +.++||+..|||+ |...+.. .. .+-+ .+.++++++
T Consensus 3 ~~~l~~~i~~~~~~~--~l~~G~~g~gk~~~a~~l~~~-------i~-------~~~~-------------~h~D~~~i~ 53 (198)
T d2gnoa2 3 LETLKRIIEKSEGIS--ILINGEDLSYPREVSLELPEY-------VE-------KFPP-------------KASDVLEID 53 (198)
T ss_dssp HHHHHHHHHTCSSEE--EEEECSSSSHHHHHHHHHHHH-------HH-------TSCC-------------CTTTEEEEC
T ss_pred HHHHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHH-------Hh-------cccc-------------CCCCEEEEe
Confidence 467899999987666 9999998557765 3322110 00 0000 122344443
Q ss_pred hhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCHHHHHHHHHhhhhcCCC-eEEEE
Q psy1686 132 VINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEMSP-VVITA 210 (448)
Q Consensus 132 ~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p-i~Ila 210 (448)
..+. .-|+ ++||+.++.. .. ...+-.++|++|||+|+|+.+++|+|+|++|||+.. +||+.
T Consensus 54 ~~~~-~I~I------------d~IR~i~~~~-~~----~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLi 115 (198)
T d2gnoa2 54 PEGE-NIGI------------DDIRTIKDFL-NY----SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLN 115 (198)
T ss_dssp CSSS-CBCH------------HHHHHHHHHH-TS----CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEE
T ss_pred CCcC-CCCH------------HHHHHHHHHH-hh----CcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeec
Confidence 2211 1122 8899855543 22 222224689999999999999999999999999887 88888
Q ss_pred ecCceeEeeccccCCCCCCChhhhhhcccccCCCCC
Q psy1686 211 TNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQ 246 (448)
Q Consensus 211 T~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys 246 (448)
|+. +..++++++|||++|+|++.+
T Consensus 116 t~~------------~~~ll~TI~SRC~~i~~~~p~ 139 (198)
T d2gnoa2 116 TRR------------WHYLLPTIKSRVFRVVVNVPK 139 (198)
T ss_dssp ESC------------GGGSCHHHHTTSEEEECCCCH
T ss_pred cCC------------hhhCHHHHhcceEEEeCCCch
Confidence 887 778999999999999998664
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.52 E-value=1.7e-13 Score=126.28 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=98.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC---CC--eEEEEecCceeEeeccccCCCCCCChhhhhhcc--cccCCCCCHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM---SP--VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIPTQPYQDE 248 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~---~p--i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~~~pys~~ 248 (448)
..+.++|+++.+.....+.+....+... .+ .+|++++. ......+.+.+.+|+. .+.|.||+.+
T Consensus 125 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~r~~~~~i~~~~~~~~ 195 (276)
T d1fnna2 125 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN---------DAVLNNLDPSTRGIMGKYVIRFSPYTKD 195 (276)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS---------THHHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred ccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCc---------hhhhhhcchhhhhhhcchhccccchhHH
Confidence 4788899999999888777777666432 11 33333332 1223357788999985 5899999999
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHH
Q psy1686 249 EIQAILKIRL--------MQTDGLRVLTKIA--------LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYAL 309 (448)
Q Consensus 249 eI~~IL~~Ra--------i~deal~~La~~a--------~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~l 309 (448)
|+.+||+.|+ ++++++++|++.+ ..||+|.|+++++.|...|..++...|+.+||+++..-
T Consensus 196 e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~ 272 (276)
T d1fnna2 196 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 272 (276)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9999998776 8999999999873 37999999999999998888778889999999998874
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.47 E-value=9.3e-13 Score=121.91 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=94.1
Q ss_pred CeEEEEeccCCC------CHHHHHHHHHhhhhcCCC------eEEEEecCceeEeeccccCCCCCCChhhhhh-cccccC
Q psy1686 176 PGVLFIDEVHML------DIECFSFLNRALESEMSP------VVITATNRGVTKIRGTAYSSPHGIPIDLLDR-MVIIPT 242 (448)
Q Consensus 176 ~~VLfIDEVH~L------~~~~f~~Llk~lEe~~~p------i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR-~~ii~~ 242 (448)
+.++++||+|.+ +.+.++.|.+..|..... .+|+.++.. ..++ .....++.+++| +..+.|
T Consensus 133 ~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~----~~~~--~~~~~~~~~~~r~~~~i~f 206 (287)
T d1w5sa2 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDV----RALS--YMREKIPQVESQIGFKLHL 206 (287)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEET----HHHH--HHHHHCHHHHTTCSEEEEC
T ss_pred ccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcccceeEEeecccH----HHHH--HHHhhccchhcccceeeec
Confidence 478899999988 346777777777654311 233222210 0000 011234566777 569999
Q ss_pred CCCCHHHHHHHHHHhc--------CCHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 243 QPYQDEEIQAILKIRL--------MQTDGLRVLTKIA-----LDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 243 ~pys~~eI~~IL~~Ra--------i~deal~~La~~a-----~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
.||+.+|+.+|++.|+ ++++++++|++.+ .+||+|.|+++|+.|...|..++...||.++|+++..
T Consensus 207 ~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~ 285 (287)
T d1w5sa2 207 PAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285 (287)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred cCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 9999999999999876 8999999999875 3699999999999999888878888999999999875
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.33 E-value=1.5e-11 Score=119.80 Aligned_cols=132 Identities=18% Similarity=0.248 Sum_probs=86.1
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCC------eEEEEecCceeEeeccccCCCCCCChhhhhhccc-ccCC-CCCH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSP------VVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVI-IPTQ-PYQD 247 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~p------i~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~i-i~~~-pys~ 247 (448)
.+|+||||+++++.+.+++|+.++|+..-. .+- -.-.+.++.+++. .+..+|.++++|+.+ +.+. |.+.
T Consensus 128 ~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g~~~~--~p~~f~liaa~Np-~~~~l~~~llDRf~~~i~v~~~~~~ 204 (333)
T d1g8pa_ 128 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIR--HPARFVLVGSGNP-EEGDLRPQLLDRFGLSVEVLSPRDV 204 (333)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEE--EECCEEEEEEECS-CSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred ccEeecccHHHHHHHHHHHHhhhhcCCeEEecccCceec--CCCCEEEEEecCc-cccccccchhhhhcceeeccCcchh
Confidence 489999999999999999999999975210 000 0001122222222 246799999999963 4443 3333
Q ss_pred HHHHHHHHHh-----------------------------c------CCHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHH
Q psy1686 248 EEIQAILKIR-----------------------------L------MQTDGLRVLTKIA--LD-TSLRYAIQLITTASVV 289 (448)
Q Consensus 248 ~eI~~IL~~R-----------------------------a------i~deal~~La~~a--~~-Gd~R~AL~lLe~a~~~ 289 (448)
++-.+++..+ . ++++....++... .+ -++|-.+.++..|..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~S~R~~~~llrvArti 284 (333)
T d1g8pa_ 205 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARAL 284 (333)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3222222110 0 6666666665553 12 2899999999999888
Q ss_pred hhhhCCCcccHHHHHHHHHHh
Q psy1686 290 CRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 290 a~~~~~~~It~e~V~~~~~lf 310 (448)
|.-+++..|+.+||+++..+.
T Consensus 285 A~L~gr~~V~~~di~~a~~lv 305 (333)
T d1g8pa_ 285 AALEGATAVGRDHLKRVATMA 305 (333)
T ss_dssp HHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHH
Confidence 877889999999999988753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=3.9e-12 Score=120.70 Aligned_cols=210 Identities=17% Similarity=0.207 Sum_probs=133.1
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCC------CCCC-CcccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEV------VMVW-PCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~k------i~gp-f~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|.-.|++++|++.+++...=+...++... ...| =+.++|||.+|||+ ++-. |+++++ +
T Consensus 3 ~p~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ai-------a~~~~~------~ 69 (247)
T d1ixza_ 3 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV-------AGEARV------P 69 (247)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHH-------HHHTTC------C
T ss_pred CCCCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHH-------HHHcCC------C
Confidence 467568999999999876433333333211 1111 17899999558875 5522 222222 3
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+. +|+ +.+.+.-.+|-...+++.++.+. .. .|.|+||||+|.
T Consensus 70 ~~~--------------------i~~--------~~l~~~~~g~~~~~l~~~f~~a~------~~---~p~Ii~iDeid~ 112 (247)
T d1ixza_ 70 FIT--------------------ASG--------SDFVEMFVGVGAARVRDLFETAK------RH---APCIVFIDEIDA 112 (247)
T ss_dssp EEE--------------------EEH--------HHHHHSCTTHHHHHHHHHHHHHT------TS---SSEEEEEETHHH
T ss_pred EEE--------------------EEh--------HHhhhccccHHHHHHHHHHHHHH------Hc---CCEEEEEEChhh
Confidence 333 222 12233322333355666554431 11 478999999998
Q ss_pred CCH--------------HHHHHHHHhhhhcCC--CeEE-EEecCceeEeeccccCCCCCCChhhh--hhcc-cccCCCCC
Q psy1686 187 LDI--------------ECFSFLNRALESEMS--PVVI-TATNRGVTKIRGTAYSSPHGIPIDLL--DRMV-IIPTQPYQ 246 (448)
Q Consensus 187 L~~--------------~~f~~Llk~lEe~~~--pi~I-laT~~~i~lI~~Ttenp~~~Ip~~lL--SR~~-ii~~~pys 246 (448)
|.. ...+.|+..++.... ++++ .+||. +..++++++ +|+- +|.|.+++
T Consensus 113 l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~------------~~~ld~al~R~~Rf~~~i~~~~P~ 180 (247)
T d1ixza_ 113 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR------------PDILDPALLRPGRFDRQIAIDAPD 180 (247)
T ss_dssp HHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC------------GGGSCGGGGSTTSSCEEEECCSCC
T ss_pred hCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC------------ccccCHhHcCCCCCcEEEEECCcC
Confidence 721 245667777775432 3333 34444 778999998 5774 99999999
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHH
Q psy1686 247 DEEIQAILKIRL-----MQTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVY 307 (448)
Q Consensus 247 ~~eI~~IL~~Ra-----i~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~ 307 (448)
.++-.+|++.-. ..+..++.|++.. .| +.++--+++..|...|..++...|+.+|+++++
T Consensus 181 ~~eR~~il~~~l~~~~~~~~~~~~~la~~t-~g~s~~di~~lv~~A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 181 VKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCccccCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHhh
Confidence 999999998433 3333478899987 55 888888888888877766677889999999875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.2e-10 Score=109.12 Aligned_cols=213 Identities=15% Similarity=0.208 Sum_probs=135.1
Q ss_pred CccccccccccchhhhhhhHHHHHHHhcCC----CCC--CC-cccccCCCCCcch-hhhhhhccCccccccCCCccCCCC
Q psy1686 35 EPRKVSQGMVGQLQARRAAGVVLGMIKEEV----VMV--WP-CVMCGRGKNPQKV-KKISTATGREEEPDYDGWLADVTK 106 (448)
Q Consensus 35 ~p~~~~~~~VGQ~~~r~a~~~l~~mI~~~k----i~g--pf-~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~~~~ 106 (448)
.|+..+++++|.+.+.+...=+...++... +.. |- +.++|||.+|||+ ++.. |++++ .+
T Consensus 6 ~~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~i-------A~~~~------~~ 72 (256)
T d1lv7a_ 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI-------AGEAK------VP 72 (256)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHH-------HHHHT------CC
T ss_pred CCCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHH-------HHHcC------CC
Confidence 356568999999999876433333333221 111 21 7789999558875 5533 22222 24
Q ss_pred ccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCC
Q psy1686 107 DLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHM 186 (448)
Q Consensus 107 fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~ 186 (448)
|+.+..+++. ..+.| |-...+|+.++.+.. . .|.||||||+|.
T Consensus 73 ~~~i~~~~l~-------------------------~~~~g---~~~~~l~~~f~~A~~------~---~P~il~iDeiD~ 115 (256)
T d1lv7a_ 73 FFTISGSDFV-------------------------EMFVG---VGASRVRDMFEQAKK------A---APCIIFIDEIDA 115 (256)
T ss_dssp EEEECSCSST-------------------------TSCCC---CCHHHHHHHHHHHHT------T---CSEEEEETTHHH
T ss_pred EEEEEhHHhh-------------------------hcchh---HHHHHHHHHHHHHHH------c---CCEEEEEEChhh
Confidence 4443333221 11122 223567776665521 1 478999999998
Q ss_pred CCH--------------HHHHHHHHhhhhcC--CCeEEE-EecCceeEeeccccCCCCCCChhhhh--hc-ccccCCCCC
Q psy1686 187 LDI--------------ECFSFLNRALESEM--SPVVIT-ATNRGVTKIRGTAYSSPHGIPIDLLD--RM-VIIPTQPYQ 246 (448)
Q Consensus 187 L~~--------------~~f~~Llk~lEe~~--~pi~Il-aT~~~i~lI~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys 246 (448)
|.. ..++.|+..++... .+++++ +||. |..++++++. |+ ..|.+.+.+
T Consensus 116 l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~------------~~~ld~al~R~gRfd~~i~i~~P~ 183 (256)
T d1lv7a_ 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR------------PDVLDPALLRPGRFDRQVVVGLPD 183 (256)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC------------TTTSCGGGGSTTSSCEEEECCCCC
T ss_pred hCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC------------cccCCHhHcCCCCCCEEEECCCcC
Confidence 621 23566777776432 234433 3333 7789999984 77 589999999
Q ss_pred HHHHHHHHHHhc----C-CHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 247 DEEIQAILKIRL----M-QTDGLRVLTKIALDT-SLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i-~deal~~La~~a~~G-d~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
.++-.+|++... + .+..+..|++.+ +| +.++--+++..|...|..++...|+.+|+++++...
T Consensus 184 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t-~G~s~adi~~l~~~A~~~a~~~~~~~i~~~d~~~Al~rv 252 (256)
T d1lv7a_ 184 VRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (256)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCcccCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 999888987433 3 234477888888 55 999988999888877766677789999999998743
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=3.9e-09 Score=101.27 Aligned_cols=123 Identities=23% Similarity=0.265 Sum_probs=96.4
Q ss_pred CeEEEEeccCCCC---------HHHHHHHHHhhhhcCCCeEEEEecCceeEeecccc---CCCCCCChhhhhhcccccCC
Q psy1686 176 PGVLFIDEVHMLD---------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAY---SSPHGIPIDLLDRMVIIPTQ 243 (448)
Q Consensus 176 ~~VLfIDEVH~L~---------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Tte---np~~~Ip~~lLSR~~ii~~~ 243 (448)
..||||||+|.|- .+.-++|.+++. .+.+.+|++||+ .-++.-.++|..|+..+.+.
T Consensus 111 ~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-----------rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~ 179 (268)
T d1r6bx2 111 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 179 (268)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-----------SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECC
T ss_pred CceEEecchHHHhcCCCCCCccccHHHHhhHHHh-----------CCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccC
Confidence 3799999999992 356777777777 578899999984 34566678999999999999
Q ss_pred CCCHHHHHHHHHHhc----------CCHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhhh----hCCCcccHHHHH
Q psy1686 244 PYQDEEIQAILKIRL----------MQTDGLRVLTKIA-----LDTSLRYAIQLITTASVVCRR----RKATEICMEDIR 304 (448)
Q Consensus 244 pys~~eI~~IL~~Ra----------i~deal~~La~~a-----~~Gd~R~AL~lLe~a~~~a~~----~~~~~It~e~V~ 304 (448)
+.+.++...||.... ++++|+..+.+++ ...=+..|+.+|+.|+..+.. .....|+.+||+
T Consensus 180 Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllDea~a~~~~~~~~~~~~~i~~~di~ 259 (268)
T d1r6bx2 180 EPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIE 259 (268)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhhccccCcccCCHHHHH
Confidence 999999999997422 9999999998885 244688999999998765532 123469999998
Q ss_pred HHHHH
Q psy1686 305 KVYAL 309 (448)
Q Consensus 305 ~~~~l 309 (448)
.+.+.
T Consensus 260 ~~i~~ 264 (268)
T d1r6bx2 260 SVVAR 264 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=2.5e-08 Score=94.02 Aligned_cols=116 Identities=21% Similarity=0.262 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCCH-----------HHHHHHHHhhhhcCC--CeE-EEEecCceeEe
Q psy1686 153 PEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLDI-----------ECFSFLNRALESEMS--PVV-ITATNRGVTKI 218 (448)
Q Consensus 153 ~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~~-----------~~f~~Llk~lEe~~~--pi~-IlaT~~~i~lI 218 (448)
..+|+..+.+.. . .|.|+||||++.|.. ...+.++..+..... +++ |.+||.
T Consensus 84 ~~l~~~f~~A~~----~-----~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~----- 149 (258)
T d1e32a2 84 SNLRKAFEEAEK----N-----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR----- 149 (258)
T ss_dssp HHHHHHHHHHHH----T-----CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESC-----
T ss_pred HHHHHHHHHHHh----c-----CCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCC-----
Confidence 566665555421 1 379999999999942 234445544443322 233 344444
Q ss_pred eccccCCCCCCChhhhh--hc-ccccCCCCCHHHHHHHHHHhc----CCHH-HHHHHHHHcCCC-CHHHHHHHHHHHHHH
Q psy1686 219 RGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRL----MQTD-GLRVLTKIALDT-SLRYAIQLITTASVV 289 (448)
Q Consensus 219 ~~Ttenp~~~Ip~~lLS--R~-~ii~~~pys~~eI~~IL~~Ra----i~de-al~~La~~a~~G-d~R~AL~lLe~a~~~ 289 (448)
+..++++++. |+ ..|.+.+.+.++-++|++.-. +.++ -++.|++.+ .| +.++--++...|...
T Consensus 150 -------~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t-~G~s~adl~~lv~~A~~~ 221 (258)
T d1e32a2 150 -------PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQ 221 (258)
T ss_dssp -------GGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred -------ccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcc-cCCCHHHHHHHHHHHHHH
Confidence 7779999997 77 499999999999999998533 3333 378899998 55 888877777776655
Q ss_pred h
Q psy1686 290 C 290 (448)
Q Consensus 290 a 290 (448)
|
T Consensus 222 a 222 (258)
T d1e32a2 222 A 222 (258)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.64 E-value=2.3e-08 Score=93.98 Aligned_cols=186 Identities=10% Similarity=0.110 Sum_probs=109.0
Q ss_pred cccccccccch----hhhhhhHHHHHHHhcCCCCCCC-cccccCCCCCcch-hhhh-hhccCccccccCCCccCCCCccc
Q psy1686 37 RKVSQGMVGQL----QARRAAGVVLGMIKEEVVMVWP-CVMCGRGKNPQKV-KKIS-TATGREEEPDYDGWLADVTKDLR 109 (448)
Q Consensus 37 ~~~~~~~VGQ~----~~r~a~~~l~~mI~~~ki~gpf-~~~~G~ei~GKtt-~~I~-~~~gk~~a~~~d~~~~~~~~fv~ 109 (448)
++..+|+||+. ++...+..+++++++....+|- +.++|||..|||+ ++.. ..+| .+|+.
T Consensus 5 ~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~--------------~~~~~ 70 (246)
T d1d2na_ 5 SYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--------------FPFIK 70 (246)
T ss_dssp TTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--------------CSEEE
T ss_pred HhhccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccc--------------ccccc
Confidence 44568899964 4556677788888876654221 6789999558875 5533 2233 13333
Q ss_pred cCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCC-CchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC-
Q psy1686 110 CPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGE-ITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML- 187 (448)
Q Consensus 110 ~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~e-I~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L- 187 (448)
++..+ .+.|..++ -...+|+....+. .. .|.||||||||.|
T Consensus 71 --------------------i~~~~--------~~~g~~~~~~~~~i~~if~~A~------~~---~p~il~iDEid~l~ 113 (246)
T d1d2na_ 71 --------------------ICSPD--------KMIGFSETAKCQAMKKIFDDAY------KS---QLSCVVVDDIERLL 113 (246)
T ss_dssp --------------------EECGG--------GCTTCCHHHHHHHHHHHHHHHH------TS---SEEEEEECCHHHHT
T ss_pred --------------------ccccc--------ccccccccchhhhhhhhhhhhh------hc---ccceeehhhhhhHh
Confidence 11110 11121110 0134565555442 11 3689999999876
Q ss_pred ---------CHHHHHHHHHhhhhcCC---CeEEE-EecCceeEeeccccCCCCCCCh-hhhhhcc-cccCCCC-CHHHHH
Q psy1686 188 ---------DIECFSFLNRALESEMS---PVVIT-ATNRGVTKIRGTAYSSPHGIPI-DLLDRMV-IIPTQPY-QDEEIQ 251 (448)
Q Consensus 188 ---------~~~~f~~Llk~lEe~~~---pi~Il-aT~~~i~lI~~Ttenp~~~Ip~-~lLSR~~-ii~~~py-s~~eI~ 251 (448)
....++.|+..++.... +++|+ +||. +..+++ .+.+|+. .|.+..+ +.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~------------~~~ld~~~~~~rF~~~i~~P~~~~r~~il 181 (246)
T d1d2na_ 114 DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR------------KDVLQEMEMLNAFSTTIHVPNIATGEQLL 181 (246)
T ss_dssp TCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC------------HHHHHHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred hhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCC------------hhhccchhhcCccceEEecCCchhHHHHH
Confidence 33456777777776543 24443 3333 344544 3667764 6777555 456787
Q ss_pred HHHHHhc-CCHHHHHHHHHHcCCC-----CHHHHHHHHHHH
Q psy1686 252 AILKIRL-MQTDGLRVLTKIALDT-----SLRYAIQLITTA 286 (448)
Q Consensus 252 ~IL~~Ra-i~deal~~La~~a~~G-----d~R~AL~lLe~a 286 (448)
++|.... +++..+..+++.. .| ++|.++++++.+
T Consensus 182 ~~l~~~~~~~~~~~~~i~~~~-~g~~~~~~ik~ll~~ie~a 221 (246)
T d1d2na_ 182 EALELLGNFKDKERTTIAQQV-KGKKVWIGIKKLLMLIEMS 221 (246)
T ss_dssp HHHHHHTCSCHHHHHHHHHHH-TTSEEEECHHHHHHHHHHH
T ss_pred HHHHhccCCChHHHHHHHHHc-CCCccchhHHHHHHHHHHH
Confidence 7877444 7888888888886 44 588888887765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.64 E-value=4.9e-08 Score=94.46 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=55.1
Q ss_pred CeEEEEeccCCCCHH------------HHHHHHHhhhhc---CCCeEEEEecCceeEe--eccccCCCCCCChhhhhhcc
Q psy1686 176 PGVLFIDEVHMLDIE------------CFSFLNRALESE---MSPVVITATNRGVTKI--RGTAYSSPHGIPIDLLDRMV 238 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~------------~f~~Llk~lEe~---~~pi~IlaT~~~i~lI--~~Ttenp~~~Ip~~lLSR~~ 238 (448)
++|+|||||+.+.+. .++.|+..++.. ....+|. |+ .+.+| ++...+.+..+.++++.|+-
T Consensus 116 ~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~-~s-~ilfi~~ga~~~~~~~~~~p~l~~R~~ 193 (309)
T d1ofha_ 116 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVK-TD-HILFIASGAFQVARPSDLIPELQGRLP 193 (309)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEE-CT-TCEEEEEECCSSSCGGGSCHHHHHTCC
T ss_pred CceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEE-cc-ceeEEeccchhhcCcccchhhhhhhhh
Confidence 589999999998542 566788888742 2233333 33 23334 44445556668899999985
Q ss_pred -cccCCCCCHHHHHHHHH
Q psy1686 239 -IIPTQPYQDEEIQAILK 255 (448)
Q Consensus 239 -ii~~~pys~~eI~~IL~ 255 (448)
++.+.+++..++.+|++
T Consensus 194 ~~i~~~~~~~~~~~~Il~ 211 (309)
T d1ofha_ 194 IRVELTALSAADFERILT 211 (309)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred eeeeccCCCHHHHHHHHH
Confidence 79999999999999986
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=2.8e-08 Score=94.24 Aligned_cols=194 Identities=18% Similarity=0.187 Sum_probs=113.0
Q ss_pred ccccccccccchhhhhhhHHHHHHHh----------cCCCCCC-CcccccCCCCCcch-hhhhhhccCccccccCCCccC
Q psy1686 36 PRKVSQGMVGQLQARRAAGVVLGMIK----------EEVVMVW-PCVMCGRGKNPQKV-KKISTATGREEEPDYDGWLAD 103 (448)
Q Consensus 36 p~~~~~~~VGQ~~~r~a~~~l~~mI~----------~~ki~gp-f~~~~G~ei~GKtt-~~I~~~~gk~~a~~~d~~~~~ 103 (448)
|+-.|++++|.+++.++ |.+.|. +..+..| =+.++||+.+|||+ ++-. |+.+++
T Consensus 2 p~~~f~di~G~~~~k~~---l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~al-------a~~~~~---- 67 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRE---LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI-------ANECQA---- 67 (265)
T ss_dssp CCCSCSSCSSSSCCCCH---HHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHH-------HHHTTC----
T ss_pred CCCCHHHhcCHHHHHHH---HHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHH-------HHHhCC----
Confidence 56568999999999766 333332 1112111 17789998558865 4422 222222
Q ss_pred CCCccccCCCcccceeeeeeccchhhhhhhccccccchhhhcCCCCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEec
Q psy1686 104 VTKDLRCPDGELQKRKTVVHTVTLHEIDVINSRTHGFLALFAGDTGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDE 183 (448)
Q Consensus 104 ~~~fv~~p~ge~~k~kei~~~vtLheiD~~nsr~~g~~a~~~~~~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDE 183 (448)
+|+.+.. ..+.+...++....+|+....+... .|.|+||||
T Consensus 68 --~~~~~~~----------------------------~~l~~~~~~~~~~~l~~~f~~A~~~---------~p~il~ide 108 (265)
T d1r7ra3 68 --NFISIKG----------------------------PELLTMWFGESEANVREIFDKARQA---------APCVLFFDE 108 (265)
T ss_dssp --EEEEECH----------------------------HHHHTSCTTTHHHHHHHHHHHHHHT---------CSEEEEESS
T ss_pred --cEEEEEH----------------------------HHhhhccccchHHHHHHHHHHHHhc---------CCcceeHHh
Confidence 4444211 1122233334446777766655321 379999999
Q ss_pred cCCCCHH--------------HHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhh--hcc-cccCCCCC
Q psy1686 184 VHMLDIE--------------CFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ 246 (448)
Q Consensus 184 VH~L~~~--------------~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLS--R~~-ii~~~pys 246 (448)
++-|... ..+.|+..++.... +.++.+|++| |-+..+|+++++ |+. ++++.+++
T Consensus 109 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~v~vi~tt--n~~~~ld~al~r~gRf~~~i~~~~p~ 179 (265)
T d1r7ra3 109 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-------KKNVFIIGAT--NRPDIIDPAILRPGRLDQLIYIPLPD 179 (265)
T ss_dssp GGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-------------CCEEEECC--BSCTTTSCGGGSSTTSEEEEECCCCC
T ss_pred hhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCC-------CCCEEEEEeC--CCchhCCHHHhCCCCccEEEEecchH
Confidence 9988421 34677777754221 2222223222 126779999985 775 89999999
Q ss_pred HHHHHHHHHHhc----CC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy1686 247 DEEIQAILKIRL----MQ-TDGLRVLTKIALDTSLRYAIQLITTASVVCR 291 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~-deal~~La~~a~~Gd~R~AL~lLe~a~~~a~ 291 (448)
.++-.+|++.-. .. +.-++.|++.+.+-+.++--++...|...|.
T Consensus 180 ~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~ 229 (265)
T d1r7ra3 180 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 229 (265)
T ss_dssp CHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 999999998433 22 2246778888733377777777777766553
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=1.8e-07 Score=90.78 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=68.3
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcC-----------CC-eEEEEecCceeEeecc-----ccCCC--------CCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEM-----------SP-VVITATNRGVTKIRGT-----AYSSP--------HGIP 230 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~-----------~p-i~IlaT~~~i~lI~~T-----tenp~--------~~Ip 230 (448)
..|+++|||+-.+++.+++|+..+++-. .. ++|+.+|-+...+... .+... ...+
T Consensus 122 ~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~ 201 (315)
T d1r6bx3 122 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 201 (315)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred cchhhhcccccccchHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcC
Confidence 4899999999999999999999998732 33 5556666443222111 11000 1368
Q ss_pred hhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 231 IDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 231 ~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
|+|++|+- ++.|.|++.+++.+|++... ++++|+++|++.+
T Consensus 202 pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~~~~a~~~l~~~~ 258 (315)
T d1r6bx3 202 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG 258 (315)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred HHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHhC
Confidence 99999996 99999999999998876311 8888888888765
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.53 E-value=2.3e-07 Score=87.10 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=88.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC------------CeEEEEecCceeEeeccccCCCCCCChhhhhhcc--ccc
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS------------PVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMV--IIP 241 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~------------pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~--ii~ 241 (448)
.+.|||||||.|+...|..|++.+++... ..+|++|+....-. . . ...+..+|+.|+. .+.
T Consensus 95 gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l--~-~--~~~f~~~L~~~l~~~~i~ 169 (247)
T d1ny5a2 95 GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKEL--V-K--EGKFREDLYYRLGVIEIE 169 (247)
T ss_dssp TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHH--H-H--TTSSCHHHHHHHTTEEEE
T ss_pred CCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHH--H-H--cCCCcHHHHhhcCeeeec
Confidence 37899999999999999999999986431 12444444321000 0 0 1135678999864 678
Q ss_pred CCCCC--HHHHHHHHHH---hc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHH
Q psy1686 242 TQPYQ--DEEIQAILKI---RL----------MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKV 306 (448)
Q Consensus 242 ~~pys--~~eI~~IL~~---Ra----------i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~ 306 (448)
+.|+. .+||..++.. +. ++++|+..|.++.--|++|..-+++++|...+ .+..|+.+|+...
T Consensus 170 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~---~~~~I~~~dl~~l 246 (247)
T d1ny5a2 170 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 246 (247)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred CCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCeECHHHcccc
Confidence 88996 3677655543 11 89999999999987899999999999998765 3457999998753
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.48 E-value=6.6e-07 Score=86.92 Aligned_cols=96 Identities=22% Similarity=0.329 Sum_probs=67.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCC-----------C-eEEEEecCceeEeecc--------------ccCCCCCC
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMS-----------P-VVITATNRGVTKIRGT--------------AYSSPHGI 229 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~-----------p-i~IlaT~~~i~lI~~T--------------tenp~~~I 229 (448)
.+|+++|||+-..++.++.|++++++-.. . +||+.||-|--.|... ...-.-..
T Consensus 126 ~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f 205 (315)
T d1qvra3 126 YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 205 (315)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhc
Confidence 48999999999999999999999998531 2 4445444322111000 00001237
Q ss_pred Chhhhhhcc-cccCCCCCHHHHHHHHHHhc---------------CCHHHHHHHHHHc
Q psy1686 230 PIDLLDRMV-IIPTQPYQDEEIQAILKIRL---------------MQTDGLRVLTKIA 271 (448)
Q Consensus 230 p~~lLSR~~-ii~~~pys~~eI~~IL~~Ra---------------i~deal~~La~~a 271 (448)
+++|++|+- ++.|.|++.+++.+|+.... ++++++++|++.+
T Consensus 206 ~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~~ 263 (315)
T d1qvra3 206 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERG 263 (315)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred CHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHhC
Confidence 899999997 88999999999999987321 8888888887764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.42 E-value=3.5e-07 Score=83.91 Aligned_cols=97 Identities=20% Similarity=0.314 Sum_probs=66.1
Q ss_pred eEEEEeccCCCC--H----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhc---ccccCCCCCH
Q psy1686 177 GVLFIDEVHMLD--I----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRM---VIIPTQPYQD 247 (448)
Q Consensus 177 ~VLfIDEVH~L~--~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~---~ii~~~pys~ 247 (448)
++|+||+||.+. . ..|+.++...+. ...+|++++.. ........++|.||+ .++.++| +.
T Consensus 99 dll~iDDi~~i~~~~~~~~~lf~lin~~~~~--~~~iiits~~~--------p~~l~~~~~dL~SRL~~g~~~~i~p-~d 167 (213)
T d1l8qa2 99 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIILASDRH--------PQKLDGVSDRLVSRFEGGILVEIEL-DN 167 (213)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEEEESSC--------GGGCTTSCHHHHHHHHTSEEEECCC-CH
T ss_pred cchhhhhhhhhcCchHHHHHHHHHHHHHhhc--cceEEEecCCc--------chhccccchHHHHHhhCceEEEECC-Cc
Confidence 799999999994 2 346677777663 12233333321 000112568999997 4788865 78
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy1686 248 EEIQAILKIRL------MQTDGLRVLTKIALDTSLRYAIQLITTA 286 (448)
Q Consensus 248 ~eI~~IL~~Ra------i~deal~~La~~a~~Gd~R~AL~lLe~a 286 (448)
++..++|+.++ ++++++++|++.. + |+|.-..+|...
T Consensus 168 ~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~-~~R~L~~~l~~l 210 (213)
T d1l8qa2 168 KTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLI 210 (213)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-C-cHHHHHHHHHHh
Confidence 88888998777 9999999999986 4 788766665543
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.42 E-value=5.7e-07 Score=90.03 Aligned_cols=130 Identities=23% Similarity=0.267 Sum_probs=83.1
Q ss_pred hhhcCC--CCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCC--------CHHHHHHHHHhhhhcCCCeEEEEe
Q psy1686 142 ALFAGD--TGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHML--------DIECFSFLNRALESEMSPVVITAT 211 (448)
Q Consensus 142 a~~~~~--~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L--------~~~~f~~Llk~lEe~~~pi~IlaT 211 (448)
++.+|- .++.-..++..++.... ..| +.||||||+|.| +.++.++|.+++.
T Consensus 88 ~l~ag~~~~g~~e~r~~~i~~~~~~---~~~-----~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~----------- 148 (387)
T d1qvra2 88 SLLAGAKYRGEFEERLKAVIQEVVQ---SQG-----EVILFIDELHTVVGAGKAEGAVDAGNMLKPALA----------- 148 (387)
T ss_dssp ----------CHHHHHHHHHHHHHT---TCS-----SEEEEECCC-------------------HHHHH-----------
T ss_pred hhhcccCcchhHHHHHHHHHHHhcc---CCC-----ceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh-----------
Confidence 345544 34555555555544321 112 368999999999 3477899999998
Q ss_pred cCceeEeeccccCC--CCCCChhhhhhcccccCCCCCHHHHHHHHHHhc----------CCHHHHHHHHHHc-----CCC
Q psy1686 212 NRGVTKIRGTAYSS--PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL----------MQTDGLRVLTKIA-----LDT 274 (448)
Q Consensus 212 ~~~i~lI~~Ttenp--~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~~Ra----------i~deal~~La~~a-----~~G 274 (448)
.+.+.+|++||..- .|.=-++|..|+..+.+.+.+.++...||+... |+++|+...+++| ...
T Consensus 149 rg~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~ 228 (387)
T d1qvra2 149 RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERR 228 (387)
T ss_dssp TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSC
T ss_pred CCCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhccccccccc
Confidence 57888899998321 233467899999999999999999999988422 9999999999874 356
Q ss_pred CHHHHHHHHHHHHHHh
Q psy1686 275 SLRYAIQLITTASVVC 290 (448)
Q Consensus 275 d~R~AL~lLe~a~~~a 290 (448)
=+..|+.+|+.|+...
T Consensus 229 ~PdKAidlld~a~a~~ 244 (387)
T d1qvra2 229 LPDKAIDLIDEAAARL 244 (387)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH
Confidence 7889999999987644
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2.1e-07 Score=85.21 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=55.7
Q ss_pred eEEEEeccCCCC--------HHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCC---CCCCChhhhhhcccccCCCC
Q psy1686 177 GVLFIDEVHMLD--------IECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSS---PHGIPIDLLDRMVIIPTQPY 245 (448)
Q Consensus 177 ~VLfIDEVH~L~--------~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp---~~~Ip~~lLSR~~ii~~~py 245 (448)
.||||||+|.|- .+.-++|.++++ .+.+.+|++||... ++.-.++|.+|+..+...+.
T Consensus 117 iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~-----------rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep 185 (195)
T d1jbka_ 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALA-----------RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHH-----------TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred EEEEcchHHHHhcCCCCCCcccHHHHHHHHHh-----------CCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCC
Confidence 699999999993 245689999998 57888999998443 45568999999999999999
Q ss_pred CHHHHHHHH
Q psy1686 246 QDEEIQAIL 254 (448)
Q Consensus 246 s~~eI~~IL 254 (448)
+.++...||
T Consensus 186 ~~e~t~~IL 194 (195)
T d1jbka_ 186 SVEDTIAIL 194 (195)
T ss_dssp CHHHHHTTC
T ss_pred CHHHHHHHh
Confidence 999887775
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=98.21 E-value=2e-06 Score=85.21 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=43.2
Q ss_pred CCChhhhhhcc-cccCCCCCHHHHHHHHHH---------hc----------CCHHHHHHHHHHcC--CCCHHHHHHHHHH
Q psy1686 228 GIPIDLLDRMV-IIPTQPYQDEEIQAILKI---------RL----------MQTDGLRVLTKIAL--DTSLRYAIQLITT 285 (448)
Q Consensus 228 ~Ip~~lLSR~~-ii~~~pys~~eI~~IL~~---------Ra----------i~deal~~La~~a~--~Gd~R~AL~lLe~ 285 (448)
..+|+|+.|.- ++.|+|++.+++.+|+.. +. ++++|+++|++.|. +-.||---++++.
T Consensus 251 ~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~riie~ 330 (364)
T d1um8a_ 251 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 330 (364)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred hhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHHHHHHH
Confidence 36789999996 889999999999999962 11 89999999999862 2345544444443
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.75 E-value=0.0011 Score=59.10 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=59.5
Q ss_pred CeEEEEeccCCCCH----HHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhh-cccccCCCCCHHHH
Q psy1686 176 PGVLFIDEVHMLDI----ECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDR-MVIIPTQPYQDEEI 250 (448)
Q Consensus 176 ~~VLfIDEVH~L~~----~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR-~~ii~~~pys~~eI 250 (448)
+.++++||+|.+.. +.+..|....+....-.++++..... .+........ ...++..| ...+.+.|++.+|+
T Consensus 137 ~~~i~id~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~L~~l~~~e~ 213 (283)
T d2fnaa2 137 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMG-LLYDYLRVED--PESPLFGRAFSTVELKPFSREEA 213 (283)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHH-HHHHHTTTTC--TTSTTTTCCCEEEEECCCCHHHH
T ss_pred ccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhhhccccch-HHHHHHHhhh--hcchhcccceeEEeeCCCCHHHH
Confidence 57899999999743 34555555555433223333322210 1100000000 11122233 34688999999999
Q ss_pred HHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHH
Q psy1686 251 QAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLI 283 (448)
Q Consensus 251 ~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lL 283 (448)
.+++...+ ++.+.++.+.+.+ +|.+++ |+++
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~i~~~~-~G~P~~-L~~~ 248 (283)
T d2fnaa2 214 IEFLRRGFQEADIDFKDYEVVYEKI-GGIPGW-LTYF 248 (283)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHH-CSCHHH-HHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHh-CCCHHH-HHHH
Confidence 99987544 7777788899998 899864 5544
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=96.19 E-value=0.0024 Score=61.62 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCcccccCeEEEEeccCCCC
Q psy1686 148 TGEITPEVREQISAKVTEWREEGKAEIVPGVLFIDEVHMLD 188 (448)
Q Consensus 148 ~~eI~~eiR~~I~~~v~~~~~~g~~~i~~~VLfIDEVH~L~ 188 (448)
.++--..+|+....+. .+.|+||||||.+.
T Consensus 166 ~G~~e~~~~~~f~~a~-----------~~~ilf~DEid~~~ 195 (321)
T d1w44a_ 166 NTDFNVFVDDIARAML-----------QHRVIVIDSLKNVI 195 (321)
T ss_dssp BCCHHHHHHHHHHHHH-----------HCSEEEEECCTTTC
T ss_pred cchHHHHHHHHHHHHh-----------hccEEEeehhhhhc
Confidence 3444477887776652 14799999999993
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.82 E-value=0.00025 Score=69.61 Aligned_cols=40 Identities=3% Similarity=-0.177 Sum_probs=25.8
Q ss_pred ccccchhhhhhhHHHHHHHhcCCCCCCCcccccCCCCCcch-hh
Q psy1686 42 GMVGQLQARRAAGVVLGMIKEEVVMVWPCVMCGRGKNPQKV-KK 84 (448)
Q Consensus 42 ~~VGQ~~~r~a~~~l~~mI~~~ki~gpf~~~~G~ei~GKtt-~~ 84 (448)
++.|++...-. .+.. +..|...++.+.++|||.+|||+ |+
T Consensus 132 ~~~~~~~~i~~--~l~~-~~~~~~~~~~~~~~g~~~~gk~~~~~ 172 (362)
T d1svma_ 132 LLPKMDSVVYD--FLKC-MVYNIPKKRYWLFKGPIDSGKTTLAA 172 (362)
T ss_dssp TSTTHHHHHHH--HHHH-HHHCCTTCCEEEEECSTTSSHHHHHH
T ss_pred cccchHHHHHH--HHHH-HHhCCCCcCeEEEECCCCCCHHHHHH
Confidence 46677666532 3443 44566666678999999558876 44
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.60 E-value=0.14 Score=50.70 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=91.1
Q ss_pred eEEEEeccCCCC------------HHHHHHHHHhhhhcCC--CeEEEEecCceeEeecc--ccCCCCCCChhhhhhcc-c
Q psy1686 177 GVLFIDEVHMLD------------IECFSFLNRALESEMS--PVVITATNRGVTKIRGT--AYSSPHGIPIDLLDRMV-I 239 (448)
Q Consensus 177 ~VLfIDEVH~L~------------~~~f~~Llk~lEe~~~--pi~IlaT~~~i~lI~~T--tenp~~~Ip~~lLSR~~-i 239 (448)
++.|+||+.... ...+..|+..+|.... ..-...|+ .+.+|.+. +..-++++-|.|..|+- +
T Consensus 251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~-~~l~i~~~~~~~~~~~gliPEliGRlPi~ 329 (443)
T d1g41a_ 251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD-HILFIASGAFQVARPSDLIPELQGRLPIR 329 (443)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECT-TCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CccccchhhhhhhcccCCCCCcccchhhhhhhhhcccccccccccccccc-chhhccccchhhcccccchhhhccceEEE
Confidence 789999997641 1345667777665321 11112222 33344333 22335667899999975 8
Q ss_pred ccCCCCCHHHHHHHHHH--hc-----------------CCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH----
Q psy1686 240 IPTQPYQDEEIQAILKI--RL-----------------MQTDGLRVLTKIAL-------DTSLRYAIQLITTASVV---- 289 (448)
Q Consensus 240 i~~~pys~~eI~~IL~~--Ra-----------------i~deal~~La~~a~-------~Gd~R~AL~lLe~a~~~---- 289 (448)
..|.+|+.+++.+||.. -+ ++++|++.||+.|. +..+|.--+++|....-
T Consensus 330 v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~ 409 (443)
T d1g41a_ 330 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 409 (443)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhcc
Confidence 99999999999999963 01 89999999999984 34788887777776431
Q ss_pred -hhhhCC-CcccHHHHHHHHHHhcchhHHHHH
Q psy1686 290 -CRRRKA-TEICMEDIRKVYALFLDEGRSTQY 319 (448)
Q Consensus 290 -a~~~~~-~~It~e~V~~~~~lf~D~~~s~~~ 319 (448)
+...+. -.|+.+.|++.++-++...+..+|
T Consensus 410 ~p~~~~~~v~Id~~~v~~~l~~~~~~~dl~k~ 441 (443)
T d1g41a_ 410 ASDMNGQTVNIDAAYVADALGEVVENEDLSRF 441 (443)
T ss_dssp GGGCTTCEEEECHHHHHHHHTTTTTCHHHHHH
T ss_pred CCCCCCCEEEECHHHHHhhhhchhhcCCcccc
Confidence 111111 358899998888755544444333
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.01 E-value=0.16 Score=46.65 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=51.5
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhhhcCCCeEEEEecCceeEeeccccCCCCCCChhhhhhcccccCCCCCHHHHHHHHH
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALESEMSPVVITATNRGVTKIRGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILK 255 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lEe~~~pi~IlaT~~~i~lI~~Ttenp~~~Ip~~lLSR~~ii~~~pys~~eI~~IL~ 255 (448)
+.++++|+|+. .+++..+ .. ....+|+ |++ ...+...+-+++.++.+++++.+|-.+++.
T Consensus 136 r~LlVLDDv~~--~~~~~~~----~~-~~srilv-TTR------------~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 195 (277)
T d2a5yb3 136 NTLFVFDDVVQ--EETIRWA----QE-LRLRCLV-TTR------------DVEISNAASQTCEFIEVTSLEIDECYDFLE 195 (277)
T ss_dssp TEEEEEEEECC--HHHHHHH----HH-TTCEEEE-EES------------BGGGGGGCCSCEEEEECCCCCHHHHHHHHH
T ss_pred CeeEecchhhH--Hhhhhhh----cc-cCceEEE-Eee------------hHHHHHhcCCCCceEECCCCCHHHHHHHHH
Confidence 57899999984 4444333 21 1233333 343 112333444556689999999999999998
Q ss_pred Hhc-------CCHHHHHHHHHHcCCCCHHHHHHH
Q psy1686 256 IRL-------MQTDGLRVLTKIALDTSLRYAIQL 282 (448)
Q Consensus 256 ~Ra-------i~deal~~La~~a~~Gd~R~AL~l 282 (448)
.++ -.++....|++.+ +|.+ -||.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~iv~~c-~GlP-LAl~~ 227 (277)
T d2a5yb3 196 AYGMPMPVGEKEEDVLNKTIELS-SGNP-ATLMM 227 (277)
T ss_dssp HTSCCCC--CHHHHHHHHHHHHH-TTCH-HHHHH
T ss_pred HHhCCccCchhhHHHHHHHHHHh-CCCH-HHHHH
Confidence 666 1244556677777 7765 34333
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.40 E-value=0.11 Score=41.89 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=22.8
Q ss_pred CeEEEEeccCCCCHHHHHHHHHhhh---hcCCCeEEEEe
Q psy1686 176 PGVLFIDEVHMLDIECFSFLNRALE---SEMSPVVITAT 211 (448)
Q Consensus 176 ~~VLfIDEVH~L~~~~f~~Llk~lE---e~~~pi~IlaT 211 (448)
.++++|||+|+++.+....+.+.++ ..+...++++|
T Consensus 95 ~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 95 YDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLAT 133 (136)
T ss_dssp CSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 3889999999998876544444444 33334455433
|
| >d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: Archaeal histone domain: Archaeal histone species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Probab=91.32 E-value=0.6 Score=33.88 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHHHh
Q psy1686 245 YQDEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYALF 310 (448)
Q Consensus 245 ys~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~lf 310 (448)
+...-++.|++ +. ++.|+.+.+++.+. -+.-.+.+.|..++...+++.|+.+||..++..|
T Consensus 4 LP~a~I~ri~k-~~~~~ris~ea~~~l~~~~e----~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~~ 68 (68)
T d1htaa_ 4 LPIAPIGRIIK-NAGAERVSDDARIALAKVLE----EMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68 (68)
T ss_dssp SCHHHHHHHHH-HTTCSCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHTC
T ss_pred CcHHHHHHHHH-HCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhC
Confidence 34445677776 33 99999999988872 3666777888888877788999999999998753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=83.87 E-value=0.51 Score=38.72 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.4
Q ss_pred cCeEEEEeccCCC---CHHHHHHHHHhhhhcCCCeE
Q psy1686 175 VPGVLFIDEVHML---DIECFSFLNRALESEMSPVV 207 (448)
Q Consensus 175 ~~~VLfIDEVH~L---~~~~f~~Llk~lEe~~~pi~ 207 (448)
.+.++++||++.. +.+..++|.+.++++..+++
T Consensus 99 ~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il 134 (178)
T d1ye8a1 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred CCCceeecCCCccchhhHHHHHHHHHHhccCCCEEE
Confidence 3689999999877 45778889999987544433
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=83.73 E-value=0.35 Score=46.30 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=23.5
Q ss_pred ccCeEEEEeccCCCCHHHHHHHHHhhh
Q psy1686 174 IVPGVLFIDEVHMLDIECFSFLNRALE 200 (448)
Q Consensus 174 i~~~VLfIDEVH~L~~~~f~~Llk~lE 200 (448)
+..++++|||+-|++...++.+++++-
T Consensus 260 l~~d~lIIDEaSmv~~~l~~~ll~~~~ 286 (359)
T d1w36d1 260 LHLDVLVVDEASMIDLPMMSRLIDALP 286 (359)
T ss_dssp CSCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred cccceeeehhhhccCHHHHHHHHHHhc
Confidence 345899999999999999999998875
|
| >d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: Archaeal histone domain: Archaeal histone species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]
Probab=82.85 E-value=2.7 Score=30.08 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy1686 247 DEEIQAILKIRL----MQTDGLRVLTKIALDTSLRYAIQLITTASVVCRRRKATEICMEDIRKVYA 308 (448)
Q Consensus 247 ~~eI~~IL~~Ra----i~deal~~La~~a~~Gd~R~AL~lLe~a~~~a~~~~~~~It~e~V~~~~~ 308 (448)
..-|+.|++ +. ++.++.+.+.+.+ --+.-.+...|..++...+++.|+.+||..++.
T Consensus 5 ~a~I~rI~k-~~~~~ris~ea~~~l~~a~----e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 5 IAPVDRLIR-KAGAERVSEQAAKVLAEYL----EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65 (66)
T ss_dssp HHHHHHHHH-HTTCSEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHH-hCcccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 345667776 34 9999999998887 246777888888888877889999999998763
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.57 E-value=0.77 Score=35.58 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.1
Q ss_pred cCeEEEEeccCCCCHHHHH
Q psy1686 175 VPGVLFIDEVHMLDIECFS 193 (448)
Q Consensus 175 ~~~VLfIDEVH~L~~~~f~ 193 (448)
..+++++||+|+++.....
T Consensus 98 ~~~lvIiDEaH~~~~~~~~ 116 (140)
T d1yksa1 98 NWEVIIMDEAHFLDPASIA 116 (140)
T ss_dssp CCSEEEETTTTCCSHHHHH
T ss_pred ceeEEEEccccccChhhHH
Confidence 3589999999999776543
|