Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 93
PTZ00018 136
PTZ00018, PTZ00018, histone H3; Provisional
2e-59 smart00428 105
smart00428, H3, Histone H3
8e-53 PLN00121 136
PLN00121, PLN00121, histone H3; Provisional
9e-52 PLN00161 135
PLN00161, PLN00161, histone H3; Provisional
3e-38 PLN00160 97
PLN00160, PLN00160, histone H3; Provisional
2e-36 pfam00125 75
pfam00125, Histone, Core histone H2A/H2B/H3/H4
1e-30 COG2036 91
COG2036, HHT1, Histones H3 and H4 [Chromatin struc
7e-30
>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional
Back Hide alignment and domain information
Score = 177 bits (451), Expect = 2e-59
Identities = 88/93 (94%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVG
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVG 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
>gnl|CDD|128705 smart00428, H3, Histone H3
Back Show alignment and domain information
Score = 159 bits (405), Expect = 8e-53
Identities = 82/95 (86%), Positives = 86/95 (90%), Gaps = 2/95 (2%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSAAIGALQEASEAYL 58
PG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T DLRFQS+AI ALQEA+EAYL
Sbjct: 11 PGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYL 70
Query: 59 VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
VGLFEDTNL AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 71 VGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGERL 105
>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional
Back Show alignment and domain information
Score = 158 bits (400), Expect = 9e-52
Identities = 88/93 (94%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVG
Sbjct: 44 PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVG 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional
Back Show alignment and domain information
Score = 124 bits (312), Expect = 3e-38
Identities = 68/91 (74%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSAAIGALQEASEAYLV 59
PGTVALREIR+YQKSTELLIRKLPF RLVREI+ + + R+ + A+ ALQEA+E +LV
Sbjct: 37 PGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLV 96
Query: 60 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90
LFED NLCAIHAKRVTIMPKD+QLARRIRG
Sbjct: 97 HLFEDCNLCAIHAKRVTIMPKDMQLARRIRG 127
>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional
Back Show alignment and domain information
Score = 118 bits (296), Expect = 2e-36
Identities = 65/92 (70%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSAAIGALQEASEAYLV 59
PG AL+EI+ YQKST+LLIR+LPF RLVREI + + R+Q +AI ALQEA+EA+LV
Sbjct: 3 PGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLV 62
Query: 60 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91
GLFED+NLCAIH KRVTIMPKD+QLARRIRG+
Sbjct: 63 GLFEDSNLCAIHGKRVTIMPKDMQLARRIRGQ 94
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4
Back Show alignment and domain information
Score = 102 bits (257), Expect = 1e-30
Identities = 41/75 (54%), Positives = 49/75 (65%)
Query: 15 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 74
S+ LLI KLPF R+VRE+ + F +LR S A ALQEA E L + ED L A HAKR
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 75 VTIMPKDIQLARRIR 89
TI P+DIQLA R+
Sbjct: 61 KTITPRDIQLAVRLD 75
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Score = 101 bits (253), Expect = 7e-30
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PG V L+EIRRYQ+ST+LL+ K P +R++R+ + R S+AI LQEA E YL
Sbjct: 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 92
+ ED A HAKR T+ +DI+LA + G R
Sbjct: 56 IAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
93
PLN00160 97
histone H3; Provisional
100.0 PTZ00018 136
histone H3; Provisional
100.0 PLN00121 136
histone H3; Provisional
100.0 smart00428 105
H3 Histone H3.
100.0 PLN00161 135
histone H3; Provisional
100.0 KOG1745|consensus 137
100.0 COG2036 91
HHT1 Histones H3 and H4 [Chromatin structure and d
99.96 PF00125 75
Histone: Core histone H2A/H2B/H3/H4 histone h2a si
99.87 cd00076 85
H4 Histone H4, one of the four histones, along wit
99.55 PLN00035 103
histone H4; Provisional
99.52 cd07981 72
TAF12 TATA Binding Protein (TBP) Associated Factor
99.51 PTZ00015 102
histone H4; Provisional
99.49 smart00803 65
TAF TATA box binding protein associated factor. TA
99.43 smart00417 74
H4 Histone H4.
99.41 cd07979 117
TAF9 TATA Binding Protein (TBP) Associated Factor
99.05 PF00808 65
CBFD_NFYB_HMF: Histone-like transcription factor (
99.0 smart00576 77
BTP Bromodomain transcription factors and PHD doma
98.75 cd00074 115
H2A Histone 2A; H2A is a subunit of the nucleosome
98.6 PF15630 76
CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C
98.55 cd08050 343
TAF6 TATA Binding Protein (TBP) Associated Factor
98.44 PF15511 414
CENP-T: Centromere kinetochore component CENP-T; P
98.35 KOG0870|consensus 172
98.35 PF02969 66
TAF: TATA box binding protein associated factor (T
98.18 PF03847 68
TFIID_20kDa: Transcription initiation factor TFIID
98.09 PF02291 129
TFIID-31kDa: Transcription initiation factor IID,
98.03 KOG1142|consensus 258
97.83 KOG0869|consensus 168
97.69 KOG3467|consensus 103
97.58 PF07524 77
Bromo_TP: Bromodomain associated; InterPro: IPR006
97.12 smart00427 89
H2B Histone H2B.
97.09 PLN00158 116
histone H2B; Provisional
97.0 PTZ00463 117
histone H2B; Provisional
96.98 KOG3334|consensus 148
96.9 KOG0871|consensus 156
96.66 smart00414 106
H2A Histone 2A.
96.03 KOG2549|consensus 576
95.97 PF02269 93
TFIID-18kDa: Transcription initiation factor IID,
95.7 PLN00154 136
histone H2A; Provisional
95.59 PTZ00017 134
histone H2A; Provisional
95.46 PLN00157 132
histone H2A; Provisional
94.65 PLN00156 139
histone H2AX; Provisional
94.46 KOG1744|consensus 127
94.25 PLN00153 129
histone H2A; Provisional
94.24 COG5262 132
HTA1 Histone H2A [Chromatin structure and dynamics
94.21 COG5150 148
Class 2 transcription repressor NC2, beta subunit
93.53 PTZ00252 134
histone H2A; Provisional
93.11 KOG1756|consensus 131
92.97 KOG4336|consensus 323
92.61 cd07978 92
TAF13 The TATA Binding Protein (TBP) Associated Fa
92.25 cd08045 212
TAF4 TATA Binding Protein (TBP) Associated Factor
91.92 COG5094 145
TAF9 Transcription initiation factor TFIID, subuni
91.75 COG5208 286
HAP5 CCAAT-binding factor, subunit C [Transcriptio
91.63 PF05236 264
TAF4: Transcription initiation factor TFIID compon
91.04 KOG1657|consensus 236
90.19 COG5248 126
TAF19 Transcription initiation factor TFIID, subun
89.11 KOG3901|consensus 109
88.33 KOG2389|consensus 353
87.01 COG5095 450
TAF6 Transcription initiation factor TFIID, subuni
84.48 PF09415 72
CENP-X: CENP-S associating Centromere protein X; I
81.99 PF09123 138
DUF1931: Domain of unknown function (DUF1931); Int
81.85
>PLN00160 histone H3; Provisional
Back Hide alignment and domain information
Probab=100.00 E-value=5.4e-49 Score=259.56 Aligned_cols=92 Identities=71% Similarity=1.061 Sum_probs=89.5
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 79 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~ 79 (93)
|||+||+|||+||+||++||||+||+||||||++++. +++||+++|+.+||||+|+|||++|||||+||+||||||||+
T Consensus 3 pGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~ 82 (97)
T PLN00160 3 PGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMP 82 (97)
T ss_pred CccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccch
Confidence 8999999999999999999999999999999999986 569999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhccc
Q psy16895 80 KDIQLARRIRGER 92 (93)
Q Consensus 80 ~Di~La~~irg~~ 92 (93)
+||+|+.+|||+.
T Consensus 83 kD~~L~~rirg~~ 95 (97)
T PLN00160 83 KDMQLARRIRGQT 95 (97)
T ss_pred hhHHHHHHhhccc
Confidence 9999999999973
>PTZ00018 histone H3; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=4e-47 Score=263.28 Aligned_cols=93 Identities=95% Similarity=1.326 Sum_probs=91.2
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 80 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~ 80 (93)
||+++|+|||+||+||++||||+||+||||||++++.+++||+++|+++|||++|+|||++|||+|+||+||||||||++
T Consensus 44 pGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~k 123 (136)
T PTZ00018 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123 (136)
T ss_pred CchhHHHHHHHHcccchhccccccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcccC
Q psy16895 81 DIQLARRIRGERA 93 (93)
Q Consensus 81 Di~La~~irg~~~ 93 (93)
||+|+.+|||+.+
T Consensus 124 D~~L~~rirg~~~ 136 (136)
T PTZ00018 124 DIQLARRIRGERS 136 (136)
T ss_pred hHHHHHHhcccCC
Confidence 9999999999863
>PLN00121 histone H3; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=4.3e-47 Score=263.16 Aligned_cols=93 Identities=95% Similarity=1.323 Sum_probs=91.4
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 80 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~ 80 (93)
||+++|+|||+||+||++||||+||+||||||++++.+++||+++|+.+|||++|+|||++|||+|+||+||||||||++
T Consensus 44 pGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~k 123 (136)
T PLN00121 44 PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123 (136)
T ss_pred chhHHHHHHHHhccccccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcccC
Q psy16895 81 DIQLARRIRGERA 93 (93)
Q Consensus 81 Di~La~~irg~~~ 93 (93)
||+|+.+|||+.+
T Consensus 124 D~~L~~rirg~~~ 136 (136)
T PLN00121 124 DIQLARRIRGERA 136 (136)
T ss_pred hHHHHHHhccccC
Confidence 9999999999864
>smart00428 H3 Histone H3
Back Show alignment and domain information
Probab=100.00 E-value=6.3e-47 Score=252.87 Aligned_cols=92 Identities=89% Similarity=1.231 Sum_probs=90.4
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccC
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~--~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~ 78 (93)
||++||+|||+||+||++||||+||+||||||++++.+ ++|||++|+.+||+++|+|++++||+|++||.||||||||
T Consensus 11 pg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~ 90 (105)
T smart00428 11 PGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIM 90 (105)
T ss_pred CcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 89999999999999999999999999999999999986 9999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhccc
Q psy16895 79 PKDIQLARRIRGER 92 (93)
Q Consensus 79 ~~Di~La~~irg~~ 92 (93)
++||+||.+|||++
T Consensus 91 ~kDi~La~rir~~~ 104 (105)
T smart00428 91 PKDIQLARRIRGER 104 (105)
T ss_pred HhhHHHHHHHhccC
Confidence 99999999999975
>PLN00161 histone H3; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=5.4e-47 Score=262.01 Aligned_cols=92 Identities=74% Similarity=1.090 Sum_probs=89.6
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 79 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~ 79 (93)
|||+||+|||+||+||++|||++||+||||||++++. +++||+++|+.+||||+|+|||++|||||+||+||||||||+
T Consensus 37 pGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~ 116 (135)
T PLN00161 37 PGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMP 116 (135)
T ss_pred CcchHHHHHHHHccccccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccch
Confidence 8999999999999999999999999999999999996 589999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhccc
Q psy16895 80 KDIQLARRIRGER 92 (93)
Q Consensus 80 ~Di~La~~irg~~ 92 (93)
+||+|+.+|||+.
T Consensus 117 kDm~La~rirg~~ 129 (135)
T PLN00161 117 KDMQLARRIRGPI 129 (135)
T ss_pred hhHHHHHHhcccc
Confidence 9999999999974
>KOG1745|consensus
Back Show alignment and domain information
Probab=100.00 E-value=4.1e-45 Score=252.94 Aligned_cols=93 Identities=95% Similarity=1.341 Sum_probs=91.5
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 80 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~ 80 (93)
||+++++|||+||+||++||+|+||+||||||.+++..++|||++|+.+||||+|+|||+||||+|+||+||||||||++
T Consensus 45 pg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpk 124 (137)
T KOG1745|consen 45 PGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 124 (137)
T ss_pred CchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcccC
Q psy16895 81 DIQLARRIRGERA 93 (93)
Q Consensus 81 Di~La~~irg~~~ 93 (93)
||+||++|||+++
T Consensus 125 diQlArrirg~~~ 137 (137)
T KOG1745|consen 125 DIQLARRIRGERA 137 (137)
T ss_pred ceehhhhcccCCC
Confidence 9999999999874
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=99.96 E-value=4e-30 Score=168.11 Aligned_cols=87 Identities=49% Similarity=0.684 Sum_probs=83.8
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 80 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~ 80 (93)
||+..++|+|+||+++.++||++||+|++|+. +..|||.+|.++||+++|.|+..++++|+.||.|+||+||+++
T Consensus 1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~-----~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~ 75 (91)
T COG2036 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKA-----GAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAE 75 (91)
T ss_pred CCcchHHHHHhhhhhhhhhcCchHHHHHHHHH-----hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 79999999999999999999999999999999 5569999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhccc
Q psy16895 81 DIQLARRIRGER 92 (93)
Q Consensus 81 Di~La~~irg~~ 92 (93)
||+|+.+.+|..
T Consensus 76 DI~la~~~~~~~ 87 (91)
T COG2036 76 DIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHhccc
Confidence 999999999853
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]
Back Show alignment and domain information
Probab=99.87 E-value=2.9e-22 Score=124.25 Aligned_cols=75 Identities=48% Similarity=0.641 Sum_probs=71.2
Q ss_pred chhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 15 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 15 st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
+|...||+.||.|++|++..+....+||+++|+..||.++|.+++++|++|+.+|.|+||+||+++||++|.+++
T Consensus 1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 467899999999999999888777799999999999999999999999999999999999999999999999885
Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Back Show alignment and domain information
Probab=99.55 E-value=1.4e-14 Score=93.75 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=69.1
Q ss_pred hcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhccc
Q psy16895 13 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 92 (93)
Q Consensus 13 Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~~ 92 (93)
++.+..-||++|..||+|.. |..|++.++.+++.++.|.|+.++..||+.+|.||+|+||+..||.++.+-.|..
T Consensus 7 ~~~~~~gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 7 LRDNIKGITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HHHhhccCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 34444459999999999998 9999999999999999999999999999999999999999999999999998853
>PLN00035 histone H4; Provisional
Back Show alignment and domain information
Probab=99.52 E-value=4.1e-14 Score=94.45 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=67.8
Q ss_pred cchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 14 ~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
+..-.=||++|..||+|.. +..|++.+|.++|.++.|.|+.++..||+..|.||+|+||+.+|+.++.+-.|.
T Consensus 24 ~d~i~~ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 24 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred HhhhccCCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 3333449999999999999 999999999999999999999999999999999999999999999999998875
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=99.51 E-value=4.8e-14 Score=88.15 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=56.0
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
+++--.+.|++++ .+..|++++|.++||+.+|+|+.+++++|..+|.|+||+||+++||+|+.+
T Consensus 2 ~~k~~l~~lv~~i----d~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 2 LTKRKLQELLKEI----DPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred CcHHHHHHHHHhh----CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3444455666666 456999999999999999999999999999999999999999999999975
The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
>PTZ00015 histone H4; Provisional
Back Show alignment and domain information
Probab=99.49 E-value=6.8e-14 Score=93.23 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=69.3
Q ss_pred hhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 11 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 11 ~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+.++....-||++|..||+|.. +..|++.++.+++.++.|.|+.++..+|+.+|.||+|+||+.+||.++.+-.|
T Consensus 22 k~~r~~i~gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g 96 (102)
T PTZ00015 22 KVLRDNIRGITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQG 96 (102)
T ss_pred HHHhhcccCCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC
Confidence 3334444459999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred c
Q psy16895 91 E 91 (93)
Q Consensus 91 ~ 91 (93)
.
T Consensus 97 ~ 97 (102)
T PTZ00015 97 R 97 (102)
T ss_pred C
Confidence 5
>smart00803 TAF TATA box binding protein associated factor
Back Show alignment and domain information
Probab=99.43 E-value=2.7e-13 Score=83.60 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=61.3
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.+|+.|..|+.+.. |..|+++++..+|.+..|.++-++.++|..++.|+||+||+++||.+|.+
T Consensus 2 ~~p~~~i~ria~~~-----Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESL-----GIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 58999999999998 99999999999999999999999999999999999999999999999863
TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
>smart00417 H4 Histone H4
Back Show alignment and domain information
Probab=99.41 E-value=2.9e-13 Score=85.63 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=61.5
Q ss_pred hcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHH
Q psy16895 13 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 84 (93)
Q Consensus 13 Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~L 84 (93)
++.+-.-||++|..||+|.- |..|++.++.+++.++.|.|+..+..+|+.+|.||+|+||+.+|+..
T Consensus 7 ~~d~i~gI~k~~IrRLaRr~-----GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 7 LRDNIQGITKPAIRRLARRG-----GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred HHhhhcCCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 33444459999999999998 99999999999999999999999999999999999999999999864
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=99.05 E-value=8.1e-10 Score=74.85 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 26 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 26 ~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
.++|..|..+. |..++++++...|-+.++.|..++..+|...|.||||.||+.+|++||.+.|+.
T Consensus 4 ~~~v~~iLk~~-Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 4 ARVIAAILKSM-GITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 46666665544 678999999999999999999999999999999999999999999999999875
The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin
Back Show alignment and domain information
Probab=99.00 E-value=9.9e-10 Score=66.62 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=54.1
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 86 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~ 86 (93)
+|.+...|++|.. .+..+++.+|..+++.++|.|+..|...|+..|.+.+|+||+.+|+.-|.
T Consensus 3 lP~a~vkri~k~~----~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 3 LPLARVKRIMKSD----PDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp S-HHHHHHHHHHT----STTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CChHHHHHHhccC----CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 6888888888776 35678999999999999999999999999999999999999999998763
The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins
Back Show alignment and domain information
Probab=98.75 E-value=3.3e-08 Score=62.14 Aligned_cols=54 Identities=24% Similarity=0.155 Sum_probs=51.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
|-.+++++|++.|.+..|.|+..+.+.+...|.|++|.++++.|+.++..--|.
T Consensus 20 Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 20 GFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 778999999999999999999999999999999999999999999999877664
subdomain of archael histone-like transcription factors
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome
Back Show alignment and domain information
Probab=98.60 E-value=7.2e-08 Score=65.44 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=62.6
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..+.+|-.++.|++|+- ....|++.+|...|-.+.|.+..+++|.|...|.|.+|.+|+++|++++.+
T Consensus 17 agL~fPV~ri~R~Lk~~----~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 17 AGLQFPVGRIHRYLKKG----RYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred cCccCcHHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 36889999999999872 157999999999999999999999999999999999999999999999975
The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C
Back Show alignment and domain information
Probab=98.55 E-value=2.1e-07 Score=59.07 Aligned_cols=65 Identities=28% Similarity=0.260 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 23 LPFQRLVREIAQDF--KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 23 ~pF~Rlvrei~~~~--~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
+.+..-|-+|+.+. ..+..++++.+.+|-|.+=.++..+..|--..|.||||.||+++|+.|..|
T Consensus 5 aal~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 5 AALWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 34445566666665 468899999999999999999999999999999999999999999999864
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=98.44 E-value=5.6e-07 Score=70.08 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=55.0
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 29 VREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 29 vrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
|+.|+... |..+++++|..+|.+-+|.++-++.++|..+|.|+||+||+++||++|.+.++.
T Consensus 5 i~~ia~~~-Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~ 66 (343)
T cd08050 5 IKLIAESL-GIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNV 66 (343)
T ss_pred HHHHHHHc-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCC
Confidence 44444322 677999999999999999999999999999999999999999999999999864
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T
Back Show alignment and domain information
Probab=98.35 E-value=7.1e-07 Score=71.21 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=43.9
Q ss_pred cccccHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCccc
Q psy16895 20 IRKLPFQRLVREIAQD-FKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 81 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~-~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~D 81 (93)
+|..+..+++.-.+.. +....+++++|+.+|.+++|-|..+|-+|--..|.|||||||...|
T Consensus 352 lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 352 LPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4555555555555442 2357999999999999999999999999999999999999999877
>KOG0870|consensus
Back Show alignment and domain information
Probab=98.35 E-value=7.5e-07 Score=63.96 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=64.2
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.++.+|++-..||||+...+. +.-++.+|..++++++=-|+.-|.-.|+..|.-.+|+|++++|+-=++.
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 468899999999999997765 6899999999999999999999999999999999999999999876654
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex
Back Show alignment and domain information
Probab=98.18 E-value=5.9e-06 Score=51.17 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=45.1
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 29 VREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 29 vrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
||.++... |-...++++...|.+-+|.-+-++.++|..++.|+||.++++.||..|.|
T Consensus 9 vk~iAes~-Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 9 VKDIAESL-GISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHT-T---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 44554433 33468999999999999999999999999999999999999999998875
TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []
Back Show alignment and domain information
Probab=98.09 E-value=1.5e-05 Score=49.46 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
++.||++| .+...+.+++-+.|.+.+++|+.+....|..+|.|.|--||.++|+++..+
T Consensus 5 l~~Lv~~i----Dp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 5 LQELVKQI----DPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHCC-----SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 34455555 678999999999999999999999999999999999999999999999875
; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []
Back Show alignment and domain information
Probab=98.03 E-value=2.5e-05 Score=53.99 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 26 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 26 ~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
.|+|..|..+. |-..+++.++..|-|.+=.|..++++||...|.||+|.+|..+|++||...|.+
T Consensus 15 a~~i~~iL~~~-Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~ 79 (129)
T PF02291_consen 15 ARVIHLILKSM-GVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLD 79 (129)
T ss_dssp HHHHHHHHHHT-T---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT--
T ss_pred HHHHHHHHHHc-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHh
Confidence 57888887766 344589999999999999999999999999999999999999999999988753
TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
>KOG1142|consensus
Back Show alignment and domain information
Probab=97.83 E-value=2.9e-05 Score=59.04 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=66.1
Q ss_pred hhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 11 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 11 ~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.++.+++.++-|--...||++| .++..+.+++-+.|.+.|++|+..+-.-|-.+|+|.|-.||-++||+|+.+
T Consensus 146 ~~~~~~~~il~k~kl~dLvqqI----d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLE 218 (258)
T KOG1142|consen 146 QDEPGNNPILSKRKLDDLVQQI----DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLE 218 (258)
T ss_pred cccCCCCccccccchhHHHHhh----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeee
Confidence 5667888888888888888888 568889999999999999999999999999999999999999999999864
>KOG0869|consensus
Back Show alignment and domain information
Probab=97.69 E-value=0.00012 Score=52.38 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=64.4
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
.+-++|.+-..|+.|.+ +..+-.++++|.+..||.+=.|+-=+-..|..-.---||+||+.+|+-.|+--.|
T Consensus 29 qDr~LPIANV~RIMK~~---lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLG 100 (168)
T KOG0869|consen 29 QDRFLPIANVSRIMKKA---LPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLG 100 (168)
T ss_pred hhhhccHHHHHHHHHhc---CCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcC
Confidence 34569999999999999 4488899999999999999999999999999999999999999999998876554
>KOG3467|consensus
Back Show alignment and domain information
Probab=97.58 E-value=0.00022 Score=46.83 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
|-|....||.|.- +--|+..-..+....++-.|+.....+|...+-||||+||+.-|+--+.+-.|.
T Consensus 30 itKpaIRRlARr~-----GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~ 96 (103)
T KOG3467|consen 30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred cchHHHHHHHHhc-----CcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc
Confidence 3477788888877 788999999999999999999999999999999999999999999888877664
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)
Back Show alignment and domain information
Probab=97.12 E-value=0.003 Score=39.17 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=49.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
|=...++.|++.|-+.+..|+..+...+...|-|++|-...+.|+.++..--|.
T Consensus 20 GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 20 GFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 334789999999999999999999999999999999999999999999876664
The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
>smart00427 H2B Histone H2B
Back Show alignment and domain information
Probab=97.09 E-value=0.0041 Score=40.66 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 26 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 26 ~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
..-+..+..+..++..++..|+..+--..-++...+..+|..++...||.||+.+||+.|.++.
T Consensus 4 ~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 4 AIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred HHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 3344444444567889999999999999999999999999999999999999999999998875
>PLN00158 histone H2B; Provisional
Back Show alignment and domain information
Probab=97.00 E-value=0.0047 Score=42.15 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=61.5
Q ss_pred ccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 21 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 21 pk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
++..|..-|..+..+..++..++..|+..+--...++...+..+|..++...+|.||+.+||+-+.++.
T Consensus 25 r~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 25 KTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred ccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 356777777777777778999999999999999999999999999999999999999999999998875
>PTZ00463 histone H2B; Provisional
Back Show alignment and domain information
Probab=96.98 E-value=0.0048 Score=42.15 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=60.7
Q ss_pred cccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 22 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 22 k~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
+..|..-|..++.+..++..++..|+..+--..-++...+..+|..++...+|.||+.+||+-+.++.
T Consensus 27 ~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 27 YDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred cchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 45677777777777778999999999999999999999999999999999999999999999999875
>KOG3334|consensus
Back Show alignment and domain information
Probab=96.90 E-value=0.0035 Score=44.29 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=54.2
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhccc
Q psy16895 26 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 92 (93)
Q Consensus 26 ~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~~ 92 (93)
.+++..|..+++ -.-+.+..+.-|-|.+=.|.+.+++||...+.||++.||..+|++||...++.+
T Consensus 16 a~~i~~iL~s~G-I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~~ 81 (148)
T KOG3334|consen 16 ARVIASILKSLG-IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVDH 81 (148)
T ss_pred HHHHHHHHHHcC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhcc
Confidence 355555655443 344567778888899999999999999999999999999999999999988764
>KOG0871|consensus
Back Show alignment and domain information
Probab=96.66 E-value=0.0075 Score=42.88 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=65.5
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
-++-+||+....+|+|++ ..+.||..+|-+.+++++=.|+--+--.||..+.--.++||.++-+.=|..-.|
T Consensus 9 de~sLPkAtv~KmIke~l---P~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~Lg 80 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEML---PKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLG 80 (156)
T ss_pred ccccCcHHHHHHHHHHhC---CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcc
Confidence 456799999999999994 479999999999999999999999999999999999999999999887776655
>smart00414 H2A Histone 2A
Back Show alignment and domain information
Probab=96.03 E-value=0.01 Score=39.69 Aligned_cols=67 Identities=25% Similarity=0.198 Sum_probs=58.8
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
++.+|-.-|.|++|+- .-..|++..|..-|--+.|....+++|-|...+...|+..|+++|++++.+
T Consensus 7 gL~fPVgRi~r~Lk~~----~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~ 73 (106)
T smart00414 7 GLQFPVGRIHRLLRKG----TYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR 73 (106)
T ss_pred CccCchHHHHHHHHcC----ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence 5677888888888765 236799999999999999999999999999999999999999999999864
>KOG2549|consensus
Back Show alignment and domain information
Probab=95.97 E-value=0.02 Score=47.86 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=49.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
|-..++.+|..+|-+-.|.-+-++.++|.+++.|+||-+++.+|+.-|.+.+.
T Consensus 25 Gi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~n 77 (576)
T KOG2549|consen 25 GITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLN 77 (576)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcc
Confidence 67789999999999999999999999999999999999999999999988763
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18)
Back Show alignment and domain information
Probab=95.70 E-value=0.017 Score=37.55 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 29 VREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 29 vrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
|++++-.++....-.++....+.+..=.|++.+...|..+|...+|.+|+.+|+.++.|
T Consensus 7 I~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 7 IRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp CHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 45555566666777889999999999999999999999999999999999999988764
Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
>PLN00154 histone H2A; Provisional
Back Show alignment and domain information
Probab=95.59 E-value=0.03 Score=39.21 Aligned_cols=68 Identities=19% Similarity=0.125 Sum_probs=60.2
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.|.+|-..+.|+.|+-.. ...|+...|..-|--+.|....+++|-|...|...++..|++++++|+.+
T Consensus 36 gL~FPVgRi~r~Lk~g~~---~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 36 GLQFPVGRIHRQLKQRVS---AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred CccCchHHHHHHHHhhhh---hccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 677888888888887621 35799999999999999999999999999999999999999999999863
>PTZ00017 histone H2A; Provisional
Back Show alignment and domain information
Probab=95.46 E-value=0.019 Score=40.10 Aligned_cols=67 Identities=24% Similarity=0.186 Sum_probs=59.8
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.|.+|-.-+.|+.++- ....|+...|..-|--+.|....+++|-|...+...++..|++++++++.+
T Consensus 25 gL~FPVgRi~R~Lk~g----~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 25 GLQFPVGRVHRYLKKG----RYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred CcccchHHHHHHHhcc----chhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 6778888888888764 236799999999999999999999999999999999999999999999864
>PLN00157 histone H2A; Provisional
Back Show alignment and domain information
Probab=94.65 E-value=0.038 Score=38.46 Aligned_cols=67 Identities=25% Similarity=0.199 Sum_probs=59.1
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.|.+|-.-+.|++|+- ....|++..|..-|--..|....+++|-|...|...++..|++++++++.+
T Consensus 24 gL~FPVgRi~R~Lk~g----~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 24 GLQFPVGRIARYLKAG----KYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred CcccchHHHHHHHhcC----chhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 6778888888888763 246799999999999999999999999999999999999999999999863
>PLN00156 histone H2AX; Provisional
Back Show alignment and domain information
Probab=94.46 E-value=0.052 Score=38.11 Aligned_cols=67 Identities=25% Similarity=0.198 Sum_probs=58.3
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.|.+|-..+.|+.++- ....|+...|..-|--+.|....+++|-|...+...++..|+|+.++|+.+
T Consensus 27 gL~FPVgRi~R~Lk~g----~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 27 GLQFPVGRIARFLKAG----KYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred CcccchHHHHHHHhcC----ChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 5667777777777664 246799999999999999999999999999999999999999999999864
>KOG1744|consensus
Back Show alignment and domain information
Probab=94.25 E-value=0.13 Score=35.64 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
|...|..++.+...+.-++..|+..+--..=+++..+...|+.+|-.-||-||..++|+.|.++.
T Consensus 39 ~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 39 YSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred eeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 33444445444455677999999999888888888999999999999999999999999999875
>PLN00153 histone H2A; Provisional
Back Show alignment and domain information
Probab=94.24 E-value=0.059 Score=37.39 Aligned_cols=67 Identities=25% Similarity=0.194 Sum_probs=59.0
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.+.+|-..+.|++|+- ....|+...|..-|--..|....+++|-|...|...++..|+|+.++++.+
T Consensus 22 gL~FpVgRi~R~Lr~g----~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 22 GLQFPVGRIARYLKKG----KYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred CcccchHHHHHHHhcC----chhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 5778878888887763 246799999999999999999999999999999999999999999999864
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=94.21 E-value=0.09 Score=36.27 Aligned_cols=66 Identities=23% Similarity=0.235 Sum_probs=55.5
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 86 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~ 86 (93)
.+..|---..|+.| .-....|+.++|...|--..|....++.|-|-..|.--|-+.|+|+-++||.
T Consensus 24 gl~fpvgrvkr~lk----~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAI 89 (132)
T COG5262 24 GLIFPVGRVKRLLK----KGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAI 89 (132)
T ss_pred CccccHHHHHHHHH----cCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHh
Confidence 34455555555554 3346899999999999999999999999999999999999999999999985
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Back Show alignment and domain information
Probab=93.53 E-value=0.32 Score=34.06 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=62.5
Q ss_pred chhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 15 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 15 st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
+.++-+||+..+..|.+|. ..++-|+.+|-+.++++.=.|+.-+--.||.++-.-..+||.++-+-=|..-
T Consensus 7 dDe~sLPKATVqKMvS~iL---p~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 7 DDENSLPKATVQKMVSSIL---PKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred cccccCcHHHHHHHHHHhc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 3456799999999999994 4899999999999999999999999999999999999999999877655543
>PTZ00252 histone H2A; Provisional
Back Show alignment and domain information
Probab=93.11 E-value=0.14 Score=35.80 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=56.8
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhh--cCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH--AKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H--akR~Tl~~~Di~La~~ 87 (93)
.+|.+|-..+.|++|+- ....|+...|..-|--+.|....+++|-|...|.. .|+..|+++.++|+.+
T Consensus 22 AGL~FPVgRi~R~Lr~g----~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 22 AGLIFPVGRVGSLLRRG----QYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred cCccCchHHHHHHHHcC----CcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 35777777777877664 23679999999999999999999999999999865 5778999999999864
>KOG1756|consensus
Back Show alignment and domain information
Probab=92.97 E-value=0.16 Score=35.35 Aligned_cols=67 Identities=25% Similarity=0.225 Sum_probs=57.5
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
++..|---..|+.|+ -....|++.+|...|--..|.....+.|.|-..|.-.++..|+|+-++||.+
T Consensus 25 gl~fPvgri~r~Lr~----~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 25 GLQFPVGRIHRLLRK----GRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred ccccCHHHHHHHHHc----cchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 455666666666666 2368999999999999999999999999999999999999999999999964
>KOG4336|consensus
Back Show alignment and domain information
Probab=92.61 E-value=0.54 Score=36.99 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=49.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhccc
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 92 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~~ 92 (93)
+---++..|++.|-++.-.|+-.+|+.+-..+.|+||--.+..|+.|.....|..
T Consensus 19 gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~ 73 (323)
T KOG4336|consen 19 GFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIK 73 (323)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCC
Confidence 4445888999999999999999999999999999999999999999999887753
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=92.25 E-value=1 Score=29.20 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
|..=++..+-.++..-.=.++....+.+..=.|++.+.-.|..+|. .+|-.++++|+..+.|
T Consensus 4 f~~ei~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR 65 (92)
T cd07978 4 FTKEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLR 65 (92)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHh
Confidence 4455566666666666677899999999999999999999999998 6666669999998864
The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=91.92 E-value=0.6 Score=34.02 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCc
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 74 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR 74 (93)
..++..-|+.+.+..|+.+.+-. -++++.+..|..|+|.+|-.+.++...++.|...
T Consensus 42 ~~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~ 98 (212)
T cd08045 42 PSFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRVD 98 (212)
T ss_pred hhccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46888899999999998876544 8899999999999999999999999999999743
The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Back Show alignment and domain information
Probab=91.75 E-value=0.5 Score=33.01 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=45.6
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCc---ccHHHHHHHh
Q psy16895 27 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP---KDIQLARRIR 89 (93)
Q Consensus 27 Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~---~Di~La~~ir 89 (93)
||+.=|....+ -....+....-|-+.+--|..++.+||...|.|++|-.+.. +|++||.--+
T Consensus 18 rlihliL~Slg-i~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 18 RLIHLILRSLG-IEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred hHHHHHHHhcC-chhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 55555544332 23344555666778899999999999999999999976655 9999997544
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Back Show alignment and domain information
Probab=91.63 E-value=0.38 Score=36.56 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=59.7
Q ss_pred hhhhhhhcchhhh---------cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCcccc
Q psy16895 7 REIRRYQKSTELL---------IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 77 (93)
Q Consensus 7 rEIr~~Q~st~ll---------Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl 77 (93)
+=+|+||++.+.+ ...+||.|+=| ++..-.+--=++++|=...-.++|-|+..|--.|...|...||-|+
T Consensus 85 ~i~ryWq~ti~~~e~~~q~~~k~h~LPlARIkk-vMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtL 163 (286)
T COG5208 85 RISRYWQQTIKAAEEERQILLKDHNLPLARIKK-VMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTL 163 (286)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhccCcHHHHHH-HHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Confidence 4478888765433 23478888743 3221112234677888889999999999999999999999999999
Q ss_pred CcccHHHHHH
Q psy16895 78 MPKDIQLARR 87 (93)
Q Consensus 78 ~~~Di~La~~ 87 (93)
...||.-|.+
T Consensus 164 QksDia~Av~ 173 (286)
T COG5208 164 QKSDIAAAVK 173 (286)
T ss_pred HHHHHHHHHH
Confidence 9999987764
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site
Back Show alignment and domain information
Probab=91.04 E-value=0.34 Score=36.38 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=38.6
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCcc
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 75 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~ 75 (93)
.+++...|+.+-+++|+.+.+ ...+.++.+..|--|+|.+|-.|.+++...|.|....
T Consensus 41 ~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~ 98 (264)
T PF05236_consen 41 EPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDS 98 (264)
T ss_dssp ---S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 467777889999999986554 6789999999999999999999999999999997554
Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
>KOG1657|consensus
Back Show alignment and domain information
Probab=90.19 E-value=0.5 Score=35.64 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=59.9
Q ss_pred cchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHH
Q psy16895 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 86 (93)
Q Consensus 14 ~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~ 86 (93)
...++.+..+|..|+ |.|...-..---|+.+|....-.++|.++..|-..|+.-|--++|.|+...|+.-+.
T Consensus 66 ~~~d~~~~~lPlaRi-KkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av 137 (236)
T KOG1657|consen 66 GQLDFKNHILPLARI-KKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAV 137 (236)
T ss_pred cccchhhccCcHhhc-cccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHh
Confidence 456778888999997 455443333448999999999999999999999999999999999999999887654
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Back Show alignment and domain information
Probab=89.11 E-value=2.5 Score=28.93 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
|..=++..+-.|+....=..+.+++|.+..=+|++.+.-.|-.+|- .|-.++.+|.+.+.+
T Consensus 11 F~KDikslmYayGDvv~P~~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr 71 (126)
T COG5248 11 FMKDIKSLMYAYGDVVAPRYDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALR 71 (126)
T ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHh
Confidence 6666777777777777777899999999999999999999988887 777889999999875
>KOG3901|consensus
Back Show alignment and domain information
Probab=88.33 E-value=3.2 Score=28.00 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 22 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 22 k~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
+--|++=+|..+-.|+.+..=-.+.+++|.+..=.|++.+...|..+. +|=.+.++|+..+.|
T Consensus 8 k~lF~Kdl~~mmYgfGDd~nP~~~tv~~Le~iV~~Yi~elt~~a~~~g---~rgk~~veD~~f~lR 70 (109)
T KOG3901|consen 8 KHLFSKDLRSMMYGFGDDVNPYPETVDLLEDIVLEYITELTHAAMEIG---KRGKVKVEDFKFLLR 70 (109)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHhc---ccCceeHHHHHHHHH
Confidence 345888888888888877777789999999999999999977666665 888899999998764
>KOG2389|consensus
Back Show alignment and domain information
Probab=87.01 E-value=1.6 Score=34.83 Aligned_cols=53 Identities=21% Similarity=0.104 Sum_probs=47.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+---++..|++.|+..+=.|+-++.+.|-..+.|++|+-....||-++..--|
T Consensus 43 g~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~dls 95 (353)
T KOG2389|consen 43 GYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQDLS 95 (353)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHHhh
Confidence 34456777999999999999999999999999999999999999999886554
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Back Show alignment and domain information
Probab=84.48 E-value=2.6 Score=33.96 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 29 VREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 29 vrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+|..++. .|--.+..+++.+|.--.|.-+-++-+.|.+.+.|.||--++..||.-|.+-+.
T Consensus 11 ~KdvAes-lGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lN 71 (450)
T COG5095 11 LKDVAES-LGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLN 71 (450)
T ss_pred HHHHHHH-cCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcC
Confidence 4444432 345678899999999999999999999999999999999999999999987653
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex
Back Show alignment and domain information
Probab=81.99 E-value=2.4 Score=26.38 Aligned_cols=56 Identities=5% Similarity=0.041 Sum_probs=40.9
Q ss_pred HHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccc-cCcccHHH
Q psy16895 29 VREIAQDF--KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT-IMPKDIQL 84 (93)
Q Consensus 29 vrei~~~~--~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~T-l~~~Di~L 84 (93)
|..|.... +...|++++|+....+..+-|...-..-|+.-+.--+-.+ |.++|++=
T Consensus 5 i~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEk 63 (72)
T PF09415_consen 5 IARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEK 63 (72)
T ss_dssp HHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444433 3689999999999999999999999888888777777777 88888763
The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
>PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five
Back Show alignment and domain information
Probab=81.85 E-value=2.9 Score=29.40 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
|.|+.|+. ..+-+.++=+.-+-+..|.-+-.||.-|...|.--+|-+|.+.|+.+...+.
T Consensus 1 fe~lFR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~ngRdvI~~~DLPITkGlq 60 (138)
T PF09123_consen 1 FERLFRKA-----AGLDVDKNDAKRYSDFVEKKLYDLLLVAQENAKANGRDVIEPRDLPITKGLQ 60 (138)
T ss_dssp HHHHHHHH-----HS----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTT-SEE-GGGS---HHHH
T ss_pred ChHHHHHH-----hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeccccCCccHHHH
Confidence 67788877 5677778888999999999999999999999999999999999998877654
The exact function of this family has not, as yet, been determined []. ; PDB: 1WWS_A 1WWI_A 1R4V_A.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 93
d1tzyc_ 95
a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
1e-55 d1f1ea_ 151
a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy
2e-09 d1ku5a_ 66
a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc
5e-05 d1htaa_ 68
a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth
3e-04 d1q9ca_ 172
a.22.1.3 (A:) Histone domain of Son of sevenless p
4e-04 d1n1ja_ 87
a.22.1.3 (A:) Nuclear transcription factor Y subun
0.001
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95
Back Hide information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Score = 164 bits (418), Expect = 1e-55
Identities = 90/93 (96%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVG
Sbjct: 3 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 62
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 63 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 49.0 bits (117), Expect = 2e-09
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
+ + + L + +R+++ R S A+ +
Sbjct: 61 KALADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEE 115
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLA 85
L E A R T+ +D++ A
Sbjct: 116 LGEKAAEYADEDGRKTVQGEDVEKA 140
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]
Score = 35.9 bits (83), Expect = 5e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 83 QLA 85
+LA
Sbjct: 61 KLA 63
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Score = 33.6 bits (77), Expect = 3e-04
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 41 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85
R A AL + E + + A HA R TI +DI+LA
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 64
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (80), Expect = 4e-04
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 5 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFED 64
A I + ++ L + L++E+ + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 65 TNLCAIHAKRVTIMPKDIQLARR 87
+ + I +DI++A
Sbjct: 140 AGNYVRNIRHYEITKQDIKVAMC 162
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 32.9 bits (75), Expect = 0.001
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 83 QLA 85
A
Sbjct: 63 LFA 65
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 93
d1tzyc_ 95
Histone H3 {Chicken (Gallus gallus), erythrocytes
100.0 d1f1ea_ 151
Archaeal histone {Archaeon Methanopyrus kandleri [
99.54 d1htaa_ 68
Archaeal histone {Archaeon Methanothermus fervidus
99.52 d1ku5a_ 66
Archaeal histone {Archaeon (Pyrococcus horikoshii)
99.45 d2huec1 82
Histone H4 {African clawed frog (Xenopus laevis) [
99.31 d1f1ea_ 151
Archaeal histone {Archaeon Methanopyrus kandleri [
99.15 d1n1ja_ 87
Nuclear transcription factor Y subunit beta (Nf-Yb
99.14 d1q9ca_ 172
Histone domain of Son of sevenless protein {Human
98.89 d1jfib_ 135
Negative cofactor 2, NC2, beta chain {Human (Homo
98.84 d2bykb1 89
Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax
98.73 d1n1jb_ 78
Nuclear transcription factor Y subunit gamma (Nf-Y
98.69 d1jfia_ 66
Negative cofactor 2, NC2, alpha chain {Human (Homo
98.52 d1tafa_ 68
TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta
98.2 d1tafb_ 70
TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta
98.16 d1h3ob_ 74
TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom
98.1 d1tzyb_ 92
Histone H2B {Chicken (Gallus gallus), erythrocytes
97.85 d1u35c1 106
macro-H2A.1, histone domain {Human (Homo sapiens)
97.2 d1tzya_ 106
Histone H2A {Chicken (Gallus gallus), erythrocytes
97.15 d1f66c_ 103
Histone H2A {Human (Homo sapiens), variant H2A.Z [
97.02 d2byka1 72
Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax
96.95 d1wwia1 148
Hypothetical protein TTHA1479 {Thermus thermophilu
84.64 d1fnna2 276
CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T
83.65
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=100.00 E-value=4.8e-50 Score=261.35 Aligned_cols=93 Identities=97% Similarity=1.338 Sum_probs=91.9
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 80 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~ 80 (93)
||++|++|||+||+||++||||+||+||||||++++++++||+++|+.+||+++|+|||++|+|||+||.|+||||||++
T Consensus 3 pGt~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~k 82 (95)
T d1tzyc_ 3 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 82 (95)
T ss_dssp HHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CchHHHHHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcccC
Q psy16895 81 DIQLARRIRGERA 93 (93)
Q Consensus 81 Di~La~~irg~~~ 93 (93)
||+||++|||+++
T Consensus 83 D~~LarrirG~r~ 95 (95)
T d1tzyc_ 83 DIQLARRIRGERA 95 (95)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCC
Confidence 9999999999986
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=99.54 E-value=3.5e-15 Score=101.88 Aligned_cols=71 Identities=17% Similarity=0.082 Sum_probs=66.5
Q ss_pred hcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 13 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 13 Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
++..++++|++++.|++|+. +..|++++|..+|++++|.|+..++++|+.+|.|+||+||+++||++|...
T Consensus 73 ~~~~~~~fp~a~IkRi~k~~-----g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~ 143 (151)
T d1f1ea_ 73 EDYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 143 (151)
T ss_dssp TTCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCccCHHHHHHHHHcC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 34568899999999999976 889999999999999999999999999999999999999999999999864
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Probab=99.52 E-value=9e-15 Score=87.61 Aligned_cols=63 Identities=29% Similarity=0.305 Sum_probs=60.4
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
+|++++.|++|+. +..|++.+|..++++++|.|+..+.++|+.+|.|+||+||+++|+..|.+
T Consensus 4 LP~a~I~ri~k~~-----~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk 66 (68)
T d1htaa_ 4 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 7999999999986 77899999999999999999999999999999999999999999999975
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]
Probab=99.45 E-value=3.9e-14 Score=84.52 Aligned_cols=63 Identities=30% Similarity=0.366 Sum_probs=59.5
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
+|++++.|++|+- ++.|++.+|..++++++|.|+..+.++|+.+|.|+||+||+++|+..|.+
T Consensus 3 LP~a~I~rI~k~~-----~~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 3 LPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65 (66)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred CCHHHHHHHHHhC-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 7999999999975 67899999999999999999999999999999999999999999999864
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=99.31 E-value=6.5e-13 Score=82.68 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=64.4
Q ss_pred hhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 18 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 18 llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
--||+.+..|+.+.. |..|+++++.++|.+..|.++.++..+|..+|.|++|+||+.+|+.+|++--|+
T Consensus 8 ~gI~k~~i~Riar~~-----Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~g~ 76 (82)
T d2huec1 8 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 76 (82)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred cCcCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhcCC
Confidence 349999999999988 899999999999999999999999999999999999999999999999984444
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=99.15 E-value=1.7e-11 Score=83.23 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=63.9
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
+|++|..|++|++. ++.|++.+|.+.|++..++++..+..+|+.++.|+||+||+++|++.+.+..|.
T Consensus 2 lP~a~I~rilk~~~----~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~ 69 (151)
T d1f1ea_ 2 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 69 (151)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHhC----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 79999999999863 678999999999999999999999999999999999999999999999988774
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.1e-11 Score=74.50 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=63.5
Q ss_pred hhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 18 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 18 llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+++|++...|++|+.. ++..+++.+|..++++++|.|+..+...|+.+|...+|+||.++|+.-|..-.|
T Consensus 1 l~LP~a~v~ri~K~~~---p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~ 70 (87)
T d1n1ja_ 1 IYLPIANVARIMKNAI---PQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 70 (87)
T ss_dssp CCCCHHHHHHHHHHTS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CCCcHhHHHHHHHHhC---CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC
Confidence 5789999999998773 467899999999999999999999999999999999999999999998876544
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.4e-09 Score=75.51 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=62.6
Q ss_pred hhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 9 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 9 Ir~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
|....+..++.+|-.++.|++|+. +..|++++|-..|-.+.|.+...++|.|...|.|+||+||+++||++|.+
T Consensus 89 ~~srs~ragL~fPV~rv~rlLk~~-----~a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~ 162 (172)
T d1q9ca_ 89 IEKRKRRNPLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC 162 (172)
T ss_dssp HC--------CCCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred HhccccccCceecHHHHHHHHHhc-----cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence 334445566899999999999997 68899999999999999999999999999999999999999999999975
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.4e-09 Score=70.56 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=64.0
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
++.+|++...||+++.. +..+++.+|..++++++|.|+..|...|+..|...+|+||+++||.-|..--|
T Consensus 2 dl~LP~a~I~kI~K~~~----~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~~ 71 (135)
T d1jfib_ 2 DLTIPRAAINKMIKETL----PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 71 (135)
T ss_dssp CCCCCHHHHHHHHHHHS----TTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHhhCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence 46799999999999984 36899999999999999999999999999999999999999999998876544
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=2.1e-08 Score=62.14 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=58.9
Q ss_pred ccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 21 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 21 pk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
|++...|++|+.. ++..+++.+|+.+++.++|.|+-.|...|+..|.-.+|+||+++|+.-|..--
T Consensus 1 P~a~i~ri~K~~~---p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~ 66 (89)
T d2bykb1 1 PNAVIGRLIKEAL---PESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 66 (89)
T ss_dssp CCSHHHHHHHHHS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred CccHHHHHHHHhC---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence 7778888888773 36789999999999999999999999999999999999999999998776543
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.3e-08 Score=60.32 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 24 pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
|..|+ +.|+....+..+++.+|..+++.++|.|+..+.+.|+..|...||+||+.+|+..+..
T Consensus 2 P~srV-krImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~ 64 (78)
T d1n1jb_ 2 PLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64 (78)
T ss_dssp CHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CHHHH-HHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHh
Confidence 44443 5555544567999999999999999999999999999999999999999999998864
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4e-08 Score=57.80 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHH
Q psy16895 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85 (93)
Q Consensus 23 ~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La 85 (93)
.|..| |+.|+..-.+..+++.+|...+..++|.|+..+.+.|+..|...||+||+++|+..|
T Consensus 3 fP~sr-Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~a 64 (66)
T d1jfia_ 3 FPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC 64 (66)
T ss_dssp CCHHH-HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred CChHH-HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 45555 355655556678999999999999999999999999999999999999999999865
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)42
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.20 E-value=3.5e-06 Score=50.26 Aligned_cols=63 Identities=21% Similarity=0.413 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 26 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 26 ~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
.|++..|..+. |-.-+++....-|-+.+=.|..++++||...+.||||.+|..+|++||...|
T Consensus 4 a~~i~~iL~~~-GV~~yeprV~~qlLef~yRYtt~VL~DA~vys~HA~k~~id~dDVkLAi~~r 66 (68)
T d1tafa_ 4 AQVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc
Confidence 46777787666 4557788888899999999999999999999999999999999999998776
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.16 E-value=1.6e-06 Score=51.97 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=50.2
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 29 VREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 29 vrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
||.|+... |--..++++...|-+-+|.-+-++.++|.+++.|+||.+++..||.-|.++
T Consensus 12 ik~iAeS~-Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv 70 (70)
T d1tafb_ 12 MKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence 44454433 445789999999999999999999999999999999999999999988763
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=4.5e-06 Score=50.45 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=58.6
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
++-|--.+.||++| .+...+.+++-+.|.+.+++|+.+..+.|..+|.|.|=.||.++|++|..+
T Consensus 3 il~K~~L~eLv~~i----dp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 67 (74)
T d1h3ob_ 3 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 67 (74)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 45566677888888 467899999999999999999999999999999999999999999999875
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=97.85 E-value=3e-05 Score=48.40 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 24 pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
.|..-+..+.-+..++..++..|+..+--...++...+..+|..+|...||.||+.+|||.|.++-
T Consensus 4 sy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~ 69 (92)
T d1tzyb_ 4 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 69 (92)
T ss_dssp CCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 344445555555567899999999999999999999999999999999999999999999999874
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00033 Score=44.49 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=61.8
Q ss_pred chhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 15 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 15 st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..++.+|-.-+.|+.|+- ....|++..|-.-|--+.|....+++|.|...|...|+..|+++|++++.+
T Consensus 7 ragL~FpV~ri~r~Lk~~----~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair 75 (106)
T d1u35c1 7 KAGVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75 (106)
T ss_dssp HHTCSSCHHHHHHHHHHH----STTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCCcccCHHHHHHHHhCC----CCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence 346778888888888874 257899999999999999999999999999999999999999999999974
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=97.15 E-value=0.00039 Score=44.15 Aligned_cols=69 Identities=25% Similarity=0.220 Sum_probs=60.9
Q ss_pred chhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 15 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 15 st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..++.+|-.-+.|+.|+- ....|++..|-.-|--+.|....+++|.|...|...++..|+++|++|+.+
T Consensus 8 rAgL~FpV~rv~r~Lk~~----~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir 76 (106)
T d1tzya_ 8 RAGLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 76 (106)
T ss_dssp HHTCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCCccCChHHHHHHHHcC----ccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence 346777888888888773 256799999999999999999999999999999999999999999999974
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]
Probab=97.02 E-value=0.00033 Score=44.20 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=59.8
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.++.+|-.-|.|+.|+-.. ...|+++.|-.-|--..|....+++|.|...+.-.|+..|+++|++++.+
T Consensus 8 AgL~FpVgrv~r~L~~~~~---~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~ 76 (103)
T d1f66c_ 8 AGLQFPVGRIHRHLKSRTT---SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 76 (103)
T ss_dssp HTCSSCHHHHHHHHHHTSC---SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CCcccChHHHHHHHhccCc---cceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc
Confidence 4577888888888886511 23579999999999999999999999999999999999999999999975
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.95 E-value=0.00073 Score=39.70 Aligned_cols=48 Identities=4% Similarity=-0.052 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhHHHh-hhcCccccCcccHHHHHH
Q psy16895 40 LRFQSAAIGALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 40 ~r~~~~Al~aLqea~E~~lv~lfe~a~~~a-~HakR~Tl~~~Di~La~~ 87 (93)
-.++.+|.-++..|+|-|+..|.+.|..++ .+.+|+||..+|+.-+..
T Consensus 8 ~~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~ 56 (72)
T d2byka1 8 GLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 56 (72)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHc
Confidence 468899999999999999999999998887 577789999999988864
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Bacterial histone-fold protein
domain: Hypothetical protein TTHA1479
species: Thermus thermophilus [TaxId: 274]
Probab=84.64 E-value=0.35 Score=31.63 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=57.8
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
+||-.-|+|+.|+. ..+-+.++=+.-+-+..|.-+-.||.-|...|.--+|-.|.+.|+.+...+.
T Consensus 2 ~m~~~k~e~~FR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLllva~~~A~~n~RdvI~~~DLPITkGl~ 67 (148)
T d1wwia1 2 LMKVAEFERLFRQA-----AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGLQ 67 (148)
T ss_dssp CSCHHHHHHHHHHH-----HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHHH
T ss_pred CCcHHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHHH
Confidence 57788899999999 5677788888899999999999999999999999999999999987655443
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.65 E-value=1.8 Score=27.46 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=38.6
Q ss_pred cccccchHHHHHHHHHHHH------------HHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 37 KTDLRFQSAAIGALQEASE------------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 37 ~~~~r~~~~Al~aLqea~E------------~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.....+++++++.+-+.+. -.+..+++.|...|.--++.+|+.+|++-|.+
T Consensus 209 ~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~ 271 (276)
T d1fnna2 209 LAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 271 (276)
T ss_dssp BCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 3456688888887755442 13566778888888888999999999999875
