Psyllid ID: psy17178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MSESFFNRALTITLTLTESQSLDHKTLTLTESQLSLQFKRWKIECTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccEEEEEEccEEEEEEcccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHcccccccccccccccccccccccHHHHcccccccccccccccccccEEEEEEEcccccccccHHHHcccccEEEEEEcccccccccEEccccEEEEcEEEEEccccccccccccccccEEEEEEccEEEEEEcccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHccccccccccccccccccccccccccccccccccccEEcEEEEEEccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccccccccccccccHHHHcccccccHccccccccEccccEEEEEEccEEEEEEHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHcccHHHcccccccccEEEccccHHHHHcccEEccccccEEEEEEccEEEEEEEEccccccHHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccEccccEEEEEEccEEEEEEHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHcccHHHcccccccccEEEccccHHHHHcccEEccccEEEEEEEEEccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MSESFFNRALTITLtltesqsldhktlTLTESQLSLQFKRWKIecttfysknlskpapfwqgtavvdgqlkeiklsdyyGKYLVFFfypldftfvcptEILAFNDRLEEFHQINTEVVAASVDSHFTHlawvntprkegglgklkipllsdlthkisldygvylsdqgpvrgsLLSTAIFVYAltspvngyaggALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHasraipfvskpapfwqgtavvdgqlkeiklsdyyGKYLVFFfypldftfvcptEILAFNDRLEEFHQINTEVVAASVDSHFTHlawvntprkegglgklkipllsdlthkisldygvylsdqghtldKYCLECYKMVIVYWFERGNCDW
Flexible Loop (DISEMBL)
MSESFFNRALTItltltesqsldhkTLTLTESQLSLQFKRWKIECTTFysknlskpapfwQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWvntprkegglgKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWvntprkegglgKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Low Complexity Region (SEG)
MSESFFNRALTITLTLTESQSLDHKtltltesqlslqFKRWKIECTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Disordered region (IsUnstruct)
*****FNRALTITLTLTESQSLDHKTLTLTESQLSLQFKRWKIECTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN***
Disordered Region (DISOPRED)
********ALTITLT************************************NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Disordered Region (DISEMBL)
MSESFFNRALTITLTLTESQSLDHKTLTLTESQLSLQFKRWKIECTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Disordered Region (DISPRO)
*********************************************TTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVV**********RAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSESFFNRALTITLTLTESQSLDHKTLTLTESQLSLQFKRWKIECTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q13162	271	Peroxiredoxin-4 OS=Homo s	yes	N/A	0.325	0.461	0.763	9e-54
O08807	274	Peroxiredoxin-4 OS=Mus mu	yes	N/A	0.325	0.456	0.740	8e-53
Q9Z0V5	273	Peroxiredoxin-4 OS=Rattus	yes	N/A	0.325	0.457	0.740	2e-52
Q9BGI2	274	Peroxiredoxin-4 OS=Bos ta	yes	N/A	0.325	0.456	0.724	8e-52
Q9BGI3	199	Peroxiredoxin-2 OS=Bos ta	no	N/A	0.302	0.582	0.715	7e-45
Q555L5	259	Peroxiredoxin-4 OS=Dictyo	yes	N/A	0.307	0.455	0.663	7e-44
P35705	257	Thioredoxin-dependent per	no	N/A	0.322	0.482	0.656	2e-43
Q5RC63	177	Peroxiredoxin-2 OS=Pongo	no	N/A	0.302	0.655	0.672	2e-43
Q5REY3	256	Thioredoxin-dependent per	no	N/A	0.322	0.484	0.640	3e-43
P20108	257	Thioredoxin-dependent per	no	N/A	0.380	0.568	0.581	4e-43

>sp|Q13162|PRDX4_HUMAN Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1

 Score =  211 bits (536), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 75  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 132

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 133 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 192

Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 193 EDSGHTL 199

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|O08807|PRDX4_MOUSE Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1

 Score =  207 bits (528), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 78  HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 135

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL
Sbjct: 136 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYL 195

Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 196 EDSGHTL 202

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9Z0V5|PRDX4_RAT Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 77  HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 134

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL
Sbjct: 135 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYL 194

Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 195 EDSGHTL 201

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9BGI2|PRDX4_BOVIN Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 110/127 (86%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 78  HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 135

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR++EF  INTEVVA SVDS FTHLAW+NTPR++GGLG + IPLL+DL H+IS DYGVYL
Sbjct: 136 DRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYL 195

Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 196 EDSGHTL 202

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9BGI3|PRDX2_BOVIN Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 96/116 (82%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           V KPAP +Q TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF+DR  EFH+
Sbjct: 9   VGKPAPEFQATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRAAEFHK 68

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           +N EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T K+S DYGV   D+G
Sbjct: 69  LNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEG 124

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q555L5|PRDX4_DICDI Peroxiredoxin-4 OS=Dictyostelium discoideum GN=prdx4 PE=1 SV=2

 Score =  178 bits (451), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 96/119 (80%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           + KPAP ++G AVV+G+ KEI L DY GKYL  FFYPLDFTFVCPTEI+AF++  EEF +
Sbjct: 68  IRKPAPAFKGQAVVNGEFKEISLDDYKGKYLYLFFYPLDFTFVCPTEIIAFSNAAEEFKK 127

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
              E+V  S+DS FTHLAW+NTPRKEGGLG + IPLLSDLTH+IS DYGVY+ + GHT+
Sbjct: 128 AGCELVGCSIDSPFTHLAWINTPRKEGGLGGINIPLLSDLTHQISKDYGVYIEEDGHTI 186

Reduces peroxides. May play an important role in eliminating peroxides generated during metabolism.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P35705|PRDX3_BOVIN Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 99/128 (77%), Gaps = 4/128 (3%)

Query: 234 YHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF 293
           YHA    P V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF
Sbjct: 61  YHA----PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAF 116

Query: 294 NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +D+  EFH +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV 
Sbjct: 117 SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 176

Query: 354 LSDQGHTL 361
           L   G  L
Sbjct: 177 LEGPGLAL 184

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5RC63|PRDX2_PONAB Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 97/116 (83%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+FH+
Sbjct: 8   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFHK 67

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G
Sbjct: 68  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG 123

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5REY3|PRDX3_PONAB Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 100/128 (78%), Gaps = 4/128 (3%)

Query: 234 YHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF 293
           YHA    P V++ AP+++GTAVV+G+ K++ L D+ GKYLV FFYPLDFTFVCPTEI+AF
Sbjct: 60  YHA----PAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAF 115

Query: 294 NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +D+  EFH +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV 
Sbjct: 116 SDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 175

Query: 354 LSDQGHTL 361
           L   G  L
Sbjct: 176 LEGSGLAL 183

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P20108|PRDX3_MOUSE Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 214 CLVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYL 273
           CL  +L  A+A   +  A    +S   P V++ AP+++GTAVV+G+ KE+ L D+ GKYL
Sbjct: 39  CLTDILWSASAQGKS--AFSTSSSFHTPAVTQHAPYFKGTAVVNGEFKELSLDDFKGKYL 96

Query: 274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGK 333
           V FFYPLDFTFVCPTEI+AF+D+  EFH +N EVVA SVDSHF+HLAW+NTPRK GGLG 
Sbjct: 97  VLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGH 156

Query: 334 LKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           + I LLSD+T +IS DYGV L   G  L
Sbjct: 157 MNITLLSDITKQISRDYGVLLESAGIAL 184

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
410915698	875	PREDICTED: zinc finger X-chromosomal pro	0.424	0.186	0.590	3e-54
225713470	236	Peroxiredoxin-4 [Lepeophtheirus salmonis	0.312	0.508	0.825	5e-53
348518736	261	PREDICTED: peroxiredoxin-4-like [Oreochr	0.325	0.478	0.787	7e-53
148232668	267	peroxiredoxin 4 precursor [Xenopus laevi	0.325	0.468	0.771	1e-52
55742316	271	peroxiredoxin 4 precursor [Xenopus (Silu	0.325	0.461	0.771	1e-52
326913542	314	PREDICTED: peroxiredoxin-4-like [Meleagr	0.309	0.378	0.798	1e-52
432102092	272	Peroxiredoxin-4 [Myotis davidii]	0.325	0.459	0.763	2e-52
222159957	264	2-Cys peroxiredoxin 4 [Seriola lalandi]	0.325	0.473	0.771	2e-52
403263674	271	PREDICTED: peroxiredoxin-4 [Saimiri boli	0.325	0.461	0.771	3e-52
449482803	198	PREDICTED: peroxiredoxin-4 [Taeniopygia	0.309	0.601	0.798	3e-52

>gi|410915698|ref|XP_003971324.1| PREDICTED: zinc finger X-chromosomal protein-like [Takifugu rubripes]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 133/193 (68%), Gaps = 30/193 (15%)

Query: 174 LLSTAIFVYALTSP-----VNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVN 228
           LL+  +   A  SP      + YAGG +Y    G A+          VPV          
Sbjct: 30  LLACTVRTAAEASPDKNSQCHNYAGGHVYP---GEAF---------RVPV---------- 67

Query: 229 FIAMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPT 288
                 H S+A   +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPT
Sbjct: 68  -SDHSLHLSKAK--ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPT 124

Query: 289 EILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 348
           EI+AF+DR+ EFH INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS 
Sbjct: 125 EIIAFSDRVHEFHAINTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISK 184

Query: 349 DYGVYLSDQGHTL 361
           DYGVYL DQGHTL
Sbjct: 185 DYGVYLEDQGHTL 197

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225713470|gb|ACO12581.1| Peroxiredoxin-4 [Lepeophtheirus salmonis] gi|290563010|gb|ADD38899.1| Peroxiredoxin-4 [Lepeophtheirus salmonis]

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 108/120 (90%)

Query: 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
            +SKPAPFW+GTAVV G++KE++LSDY GKYLVFFFYPLDFTFVCPTEILAFNDR+EEF 
Sbjct: 43  MISKPAPFWKGTAVVKGEMKEVQLSDYKGKYLVFFFYPLDFTFVCPTEILAFNDRVEEFR 102

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           +INTEVVA SVDSHFTHLAW N PRKEGGLGKL IPLLSDLTH IS DYGVYL + GHTL
Sbjct: 103 KINTEVVACSVDSHFTHLAWTNLPRKEGGLGKLNIPLLSDLTHSISKDYGVYLEENGHTL 162

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348518736|ref|XP_003446887.1| PREDICTED: peroxiredoxin-4-like [Oreochromis niloticus]

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 113/127 (88%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+
Sbjct: 65  HLSKAK--ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFS 122

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRL EF  INTEVVA SVDS FTHLAW+NTPRK+GGLGK+KIPLLSDLTH+IS DYGVYL
Sbjct: 123 DRLHEFQAINTEVVACSVDSQFTHLAWINTPRKQGGLGKMKIPLLSDLTHQISKDYGVYL 182

Query: 355 SDQGHTL 361
            DQGHTL
Sbjct: 183 EDQGHTL 189

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148232668|ref|NP_001085918.1| peroxiredoxin 4 precursor [Xenopus laevis] gi|49118952|gb|AAH73532.1| MGC82793 protein [Xenopus laevis] gi|343479681|gb|AEM44541.1| peroxiredoxin 4 [Xenopus laevis]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 113/127 (88%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 71  HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYKGKYLVFFFYPLDFTFVCPTEIIAFG 128

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+EEF  INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL
Sbjct: 129 DRIEEFRSINTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYL 188

Query: 355 SDQGHTL 361
            DQGHTL
Sbjct: 189 EDQGHTL 195

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|55742316|ref|NP_001006812.1| peroxiredoxin 4 precursor [Xenopus (Silurana) tropicalis] gi|49898976|gb|AAH76692.1| peroxiredoxin 4 [Xenopus (Silurana) tropicalis] gi|89269080|emb|CAJ83798.1| peroxiredoxin 4 [Xenopus (Silurana) tropicalis]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 113/127 (88%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 75  HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYKGKYLVFFFYPLDFTFVCPTEIIAFG 132

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+EEF  INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL
Sbjct: 133 DRIEEFRSINTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYL 192

Query: 355 SDQGHTL 361
            DQGHTL
Sbjct: 193 EDQGHTL 199

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326913542|ref|XP_003203096.1| PREDICTED: peroxiredoxin-4-like [Meleagris gallopavo]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 110/119 (92%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF+DR+EEF  
Sbjct: 124 LSKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRA 183

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTL
Sbjct: 184 INTEVVACSVDSKFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTL 242

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432102092|gb|ELK29907.1| Peroxiredoxin-4 [Myotis davidii]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 113/127 (88%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAPFW+GTAV++G+ KE+KLSDY+GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 76  HLSKAK--ISKPAPFWEGTAVINGEFKELKLSDYHGKYLVFFFYPLDFTFVCPTEIIAFG 133

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG +KIPLLSDLTH+I+ DYGVYL
Sbjct: 134 DRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQIAKDYGVYL 193

Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 194 EDSGHTL 200

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|222159957|gb|ACM47312.1| 2-Cys peroxiredoxin 4 [Seriola lalandi]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 114/127 (89%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKP+P W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+
Sbjct: 68  HLSKAK--ISKPSPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFS 125

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+ EFH INTEVVA SVDS FTHLAW+NTPRK+GGLG++KIPLLSDLTH+IS DYGVYL
Sbjct: 126 DRVHEFHAINTEVVACSVDSQFTHLAWINTPRKQGGLGEMKIPLLSDLTHQISKDYGVYL 185

Query: 355 SDQGHTL 361
            DQGHTL
Sbjct: 186 EDQGHTL 192

Source: Seriola lalandi

Species: Seriola lalandi

Genus: Seriola

Family: Carangidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403263674|ref|XP_003924143.1| PREDICTED: peroxiredoxin-4 [Saimiri boliviensis boliviensis]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 112/127 (88%), Gaps = 2/127 (1%)

Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 75  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 132

Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPRK+GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 133 DRLEEFRAINTEVVACSVDSQFTHLAWINTPRKQGGLGPIRIPLLSDLTHQISKDYGVYL 192

Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 193 EDSGHTL 199

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449482803|ref|XP_002196161.2| PREDICTED: peroxiredoxin-4 [Taeniopygia guttata]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 110/119 (92%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF+DR+EEF  
Sbjct: 8   ISKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRA 67

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTL
Sbjct: 68  INTEVVACSVDSKFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTL 126

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
UNIPROTKB|Q13162	271	PRDX4 "Peroxiredoxin-4" [Homo	0.325	0.461	0.763	5.6e-52
UNIPROTKB|A6NJJ0	185	PRDX4 "Peroxiredoxin-4" [Homo	0.309	0.643	0.798	9.2e-52
UNIPROTKB|F1NNS8	288	PRDX4 "Uncharacterized protein	0.325	0.434	0.763	1.2e-51
UNIPROTKB|E2RNL3	272	PRDX4 "Uncharacterized protein	0.325	0.459	0.755	2.4e-51
UNIPROTKB|F1SQ01	272	PRDX4 "Uncharacterized protein	0.325	0.459	0.740	1.1e-50
ZFIN|ZDB-GENE-030131-1096	260	prdx4 "peroxiredoxin 4" [Danio	0.325	0.480	0.755	1.1e-50
MGI|MGI:1859815	274	Prdx4 "peroxiredoxin 4" [Mus m	0.325	0.456	0.740	1.3e-50
RGD|620043	273	Prdx4 "peroxiredoxin 4" [Rattu	0.325	0.457	0.740	1.3e-50
UNIPROTKB|Q9BGI2	274	PRDX4 "Peroxiredoxin-4" [Bos t	0.325	0.456	0.724	5.8e-50
UNIPROTKB|K7GLN4	179	PRDX4 "Uncharacterized protein	0.291	0.625	0.776	2e-47

UNIPROTKB|Q13162 PRDX4 "Peroxiredoxin-4" [Homo sapiens (taxid:9606)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 97/127 (76%), Positives = 112/127 (88%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct:    75 HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 132

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct:   133 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 192

Query:   355 SDQGHTL 361
              D GHTL
Sbjct:   193 EDSGHTL 199

GO:0005615 "extracellular space" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=TAS

GO:0008379 "thioredoxin peroxidase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A6NJJ0 PRDX4 "Peroxiredoxin-4" [Homo sapiens (taxid:9606)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 95/119 (79%), Positives = 108/119 (90%)

Query:   243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
             VSKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct:    67 VSKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 126

Query:   303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTL
Sbjct:   127 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 185

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1NNS8 PRDX4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 97/127 (76%), Positives = 113/127 (88%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF+
Sbjct:    92 HLSQAK--ISKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIAFS 149

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR+EEF  INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL
Sbjct:   150 DRIEEFRAINTEVVACSVDSKFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYL 209

Query:   355 SDQGHTL 361
              DQGH L
Sbjct:   210 EDQGHAL 216

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|E2RNL3 PRDX4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 96/127 (75%), Positives = 112/127 (88%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct:    76 HHSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 133

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG +KIPLLSDLTH+IS DYGVYL
Sbjct:   134 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGVYL 193

Query:   355 SDQGHTL 361
              D GHTL
Sbjct:   194 EDSGHTL 200

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

UNIPROTKB|F1SQ01 PRDX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct:    76 HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 133

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL
Sbjct:   134 DRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYL 193

Query:   355 SDQGHTL 361
              D GHTL
Sbjct:   194 EDSGHTL 200

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

ZFIN|ZDB-GENE-030131-1096 prdx4 "peroxiredoxin 4" [Danio rerio (taxid:7955)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 96/127 (75%), Positives = 111/127 (87%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+
Sbjct:    64 HLSKAK--ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFS 121

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR+ EF  IN EVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGV+L
Sbjct:   122 DRVHEFQAINAEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVFL 181

Query:   355 SDQGHTL 361
              DQGHTL
Sbjct:   182 EDQGHTL 188

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

MGI|MGI:1859815 Prdx4 "peroxiredoxin 4" [Mus musculus (taxid:10090)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct:    78 HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 135

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL
Sbjct:   136 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYL 195

Query:   355 SDQGHTL 361
              D GHTL
Sbjct:   196 EDSGHTL 202

GO:0003674 "molecular_function" evidence=ND

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IDA

RGD|620043 Prdx4 "peroxiredoxin 4" [Rattus norvegicus (taxid:10116)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct:    77 HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 134

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR+EEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL
Sbjct:   135 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYL 194

Query:   355 SDQGHTL 361
              D GHTL
Sbjct:   195 EDSGHTL 201

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|Q9BGI2 PRDX4 "Peroxiredoxin-4" [Bos taurus (taxid:9913)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 92/127 (72%), Positives = 110/127 (86%)

Query:   235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             H S+A   +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct:    78 HLSKAK--ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 135

Query:   295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             DR++EF  INTEVVA SVDS FTHLAW+NTPR++GGLG + IPLL+DL H+IS DYGVYL
Sbjct:   136 DRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYL 195

Query:   355 SDQGHTL 361
              D GHTL
Sbjct:   196 EDSGHTL 202

GO:0005576 "extracellular region" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

UNIPROTKB|K7GLN4 PRDX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 87/112 (77%), Positives = 102/112 (91%)

Query:   243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
             VSKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct:    68 VSKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRS 127

Query:   303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL
Sbjct:   128 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYL 179

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74887	TSA1_SCHPO	1, ., 1, 1, ., 1, ., 1, 5	0.5714	0.3098	0.6197	yes	N/A
Q6ER94	BAS1_ORYSJ	1, ., 1, 1, ., 1, ., 1, 5	0.5737	0.3151	0.4636	yes	N/A
Q13162	PRDX4_HUMAN	1, ., 1, 1, ., 1, ., 1, 5	0.7637	0.3255	0.4612	yes	N/A
P34760	TSA1_YEAST	1, ., 1, 1, ., 1, ., 1, 5	0.5210	0.3098	0.6071	yes	N/A
Q9Z0V5	PRDX4_RAT	1, ., 1, 1, ., 1, ., 1, 5	0.7401	0.3255	0.4578	yes	N/A
Q555L5	PRDX4_DICDI	1, ., 1, 1, ., 1, ., 1, 5	0.6638	0.3072	0.4555	yes	N/A
Q9C5R8	BAS1B_ARATH	1, ., 1, 1, ., 1, ., 1, 5	0.5772	0.3177	0.4468	yes	N/A
Q9BGI2	PRDX4_BOVIN	1, ., 1, 1, ., 1, ., 1, 5	0.7244	0.3255	0.4562	yes	N/A
O08807	PRDX4_MOUSE	1, ., 1, 1, ., 1, ., 1, 5	0.7401	0.3255	0.4562	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.11.1.15	0.737
3rd Layer	1.11.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	384
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	2e-64
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	4e-63
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	2e-50
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	1e-48
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	8e-41
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	1e-40
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	5e-37
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	5e-36
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	1e-32
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	6e-32
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	7e-32
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	3e-31
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	4e-28
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	5e-28
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	1e-26
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	1e-25
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	2e-22
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	2e-22
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	1e-21
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	1e-21
pfam02990	518	pfam02990, EMP70, Endomembrane protein 70	2e-21
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	1e-20
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	1e-20
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	5e-20
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	2e-19
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	5e-19
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	6e-19
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	2e-17
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	2e-17
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	4e-17
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	5e-17
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	8e-17
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	2e-16
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	1e-15
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	3e-15
cd03014	143	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family,	1e-08
PRK00522	167	PRK00522, tpx, lipid hydroperoxide peroxidase; Pro	6e-07
cd03014	143	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family,	8e-07
pfam08534	142	pfam08534, Redoxin, Redoxin	2e-05
pfam08534	142	pfam08534, Redoxin, Redoxin	2e-05
PRK09437	154	PRK09437, bcp, thioredoxin-dependent thiol peroxid	9e-05
PRK09437	154	PRK09437, bcp, thioredoxin-dependent thiol peroxid	9e-05
PRK00522	167	PRK00522, tpx, lipid hydroperoxide peroxidase; Pro	6e-04

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score =  202 bits (517), Expect = 2e-64
 Identities = 77/120 (64%), Positives = 93/120 (77%), Gaps = 1/120 (0%)

Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           V K AP ++ TAVV +G+ KEI LSDY GK++V FFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 1   VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFK 60

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           ++N EV+  S DSHF+HLAW NTPRKEGGLGK+  PLL+D   KIS DYGV   ++G  L
Sbjct: 61  KLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVAL 120

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score =  199 bits (508), Expect = 4e-63
 Identities = 75/115 (65%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 55  KPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           K AP ++ TAVV +G+ KEI LSDY GK++V FFYPLDFTFVCPTEI+AF+DR EEF ++
Sbjct: 3   KKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL 62

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 168
           N EV+  S DSHF+HLAW NTPRKEGGLGK+  PLL+D   KIS DYGV   ++G
Sbjct: 63  NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEG 117

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  167 bits (424), Expect = 2e-50
 Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 241 PFVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE 299
             + K AP +   AV+ G+  +EI LSDYYGK++V FFYP DFTFVCPTEI+AF  R EE
Sbjct: 3   SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEE 62

Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 359
           F +   EV+  S DS F+H AW  T R+ GG+GK+K P+++D   +I+  YGV   ++G 
Sbjct: 63  FQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGL 122

Query: 360 TLD 362
            L 
Sbjct: 123 ALR 125

Length = 194

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  162 bits (413), Expect = 1e-48
 Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 2/123 (1%)

Query: 55  KPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           K AP +   AV+ G+  +EI LSDYYGK++V FFYP DFTFVCPTEI+AF  R EEF + 
Sbjct: 7   KKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR 66

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
             EV+  S DS F+H AW  T R+ GG+GK+K P+++D   +I+  YGV   ++G  +RG
Sbjct: 67  GVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRG 126

Query: 173 SLL 175
           + +
Sbjct: 127 TFI 129

Length = 194

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score =  142 bits (360), Expect = 8e-41
 Identities = 58/117 (49%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 53  LSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
           ++ PAP ++  A++ +G  K+I LS Y GK++V FFYPLDFTFVCPTEI+ F+D ++ F+
Sbjct: 8   INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFN 67

Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 168
           ++N EV+A S+DS + HL W    RK+GGLG + IP+L+D T  I+  YGV   +QG
Sbjct: 68  ELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG 124

Length = 199

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score =  142 bits (359), Expect = 1e-40
 Identities = 58/117 (49%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           ++ PAP ++  A++ +G  K+I LS Y GK++V FFYPLDFTFVCPTEI+ F+D ++ F+
Sbjct: 8   INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFN 67

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           ++N EV+A S+DS + HL W    RK+GGLG + IP+L+D T  I+  YGV   +QG
Sbjct: 68  ELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG 124

Length = 199

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score =  130 bits (330), Expect = 5e-37
 Identities = 46/115 (40%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +      E+ LSD+ GK++V FFYP DFT VC TE+ AF D  EEF +   EV+  SVDS
Sbjct: 7   LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAI 179
            F+H AW          G L  PLLSD   + +  YGV +        +  +T I
Sbjct: 67  PFSHKAWAEK------EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFI 115

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score =  128 bits (323), Expect = 5e-36
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           +      E+ LSD+ GK++V FFYP DFT VC TE+ AF D  EEF +   EV+  SVDS
Sbjct: 7   LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
            F+H AW          G L  PLLSD   + +  YGV +  
Sbjct: 67  PFSHKAWAEK------EGGLNFPLLSDPDGEFAKAYGVLIEK 102

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score =  122 bits (308), Expect = 1e-32
 Identities = 53/132 (40%), Positives = 82/132 (62%), Gaps = 1/132 (0%)

Query: 45  CTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAF 103
           C T  S  + K  P ++GTA+++  L +   SDY+   Y +  FYPLDFTFVCP+E+L F
Sbjct: 62  CNTVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGF 121

Query: 104 NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           ++RL+EF +   +V+  SVDS F+H AW     ++GG+  LK PL SD++ ++S  +G+ 
Sbjct: 122 SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLL 181

Query: 164 LSDQGPVRGSLL 175
             +    R S+L
Sbjct: 182 RDEGFSHRASVL 193

Length = 261

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score =  116 bits (293), Expect = 6e-32
 Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           V   AP F     + D   KE+ LSDY GK++V FFYP DFT VC TE+ A  D  EEF 
Sbjct: 1   VGDKAPDF----ELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFK 56

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           ++  EV+  SVDS  +H  +            L  PLLSD   +++  YGV   ++G  L
Sbjct: 57  KLGVEVLGVSVDSPESHKKFAEKL-------GLPFPLLSDPDGEVAKAYGVLNEEEGLAL 109

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score =  116 bits (293), Expect = 7e-32
 Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 8/112 (7%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           + D   KE+ LSDY GK++V FFYP DFT VC TE+ A  D  EEF ++  EV+  SVDS
Sbjct: 10  LPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGVSVDS 69

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGSLL 175
             +H  +            L  PLLSD   +++  YGV   ++G  +R + +
Sbjct: 70  PESHKKFAEKL-------GLPFPLLSDPDGEVAKAYGVLNEEEGLALRTTFV 114

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score =  119 bits (299), Expect = 3e-31
 Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 2/118 (1%)

Query: 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
            V K  P ++GTA+++  L +   SDY+   Y +  FYPLDFTFVCP+E+L F++RL+EF
Sbjct: 69  LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEF 128

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
            +   +V+  SVDS F+H AW     ++GG+  LK PL SD++ ++S  +G+ L D+G
Sbjct: 129 EERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGL-LRDEG 185

Length = 261

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score =  108 bits (272), Expect = 4e-28
 Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 5/119 (4%)

Query: 58  PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 117
           PF + TA  +G+  E+   D  GK+ VFFFYP DFTFVCPTE+    D   E  ++  EV
Sbjct: 10  PF-KATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEV 68

Query: 118 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGSLL 175
            + S D+HF H AW +T      +GK+  P+L D T  ++ ++GV + + G   RG+ +
Sbjct: 69  YSVSTDTHFVHKAWHDTSEA---IGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFV 124

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score =  108 bits (271), Expect = 5e-28
 Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
             ++     ++ TA  +G+  E+   D  GK+ VFFFYP DFTFVCPTE+    D   E 
Sbjct: 2   SLINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAEL 61

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
            ++  EV + S D+HF H AW +T      +GK+  P+L D T  ++ ++GV + + G
Sbjct: 62  KKLGVEVYSVSTDTHFVHKAWHDTSEA---IGKITYPMLGDPTGVLTRNFGVLIEEAG 116

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score =  105 bits (262), Expect = 1e-26
 Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 80  GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 139
           GK  V FF+P+DFTFVCP+E++AF+ R EEF +   EVV  S DS F H AW NTP  +G
Sbjct: 34  GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKG 93

Query: 140 GLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGSLLSTA 178
           G+G +K  +++D+  +I   YG+   D+G  +RGS L  A
Sbjct: 94  GIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDA 133

Length = 200

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score =  102 bits (255), Expect = 1e-25
 Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 242 FVSKPAPFWQGTAVV-DGQLKE-IKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLE 298
            V++ AP +   AV+  G++ +      +  GK  V FF+P+DFTFVCP+E++AF+ R E
Sbjct: 3   LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYE 62

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           EF +   EVV  S DS F H AW NTP  +GG+G +K  +++D+  +I   YG+   D+G
Sbjct: 63  EFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG 122

Query: 359 HTL 361
             L
Sbjct: 123 VAL 125

Length = 200

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score = 93.1 bits (231), Expect = 2e-22
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 58  PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 117
           PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++  +V
Sbjct: 10  PF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDV 68

Query: 118 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 168
            + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 69  YSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 116

Length = 187

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score = 93.1 bits (231), Expect = 2e-22
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 307
           PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++  +V
Sbjct: 10  PF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDV 68

Query: 308 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
            + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 69  YSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 116

Length = 187

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 71  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
           + + LSD  GK +V +FYP DFT  C TE   F D LEEF ++   V+  S DS  +H  
Sbjct: 21  ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80

Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           +     K G    L  PLLSD   +++  YGV+
Sbjct: 81  FAE---KHG----LTFPLLSDEDGEVAEAYGVW 106

Length = 157

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
           + + LSD  GK +V +FYP DFT  C TE   F D LEEF ++   V+  S DS  +H  
Sbjct: 21  ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80

Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +     K G    L  PLLSD   +++  YGV+
Sbjct: 81  FAE---KHG----LTFPLLSDEDGEVAEAYGVW 106

Length = 157

>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 33/73 (45%), Positives = 43/73 (58%)

Query: 170 VRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNF 229
            RGSLL+ AI +YALT  V GY    LY    G+ W R+ +L+A L P +V     V+NF
Sbjct: 291 NRGSLLTAAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLILTAFLFPGIVFVIFFVLNF 350

Query: 230 IAMYYHASRAIPF 242
           +   Y +S AIPF
Sbjct: 351 VLWAYGSSGAIPF 363

Length = 518

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 2/91 (2%)

Query: 72  EIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
            IKL D Y GK+ V F +P DFT VC TE +AF  R +EF ++NTE++  S+D  F+H+ 
Sbjct: 26  PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIK 85

Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 161
           WV   +++ G+ +++ P+++D   +I+   G
Sbjct: 86  WVEWIKEKLGV-EIEFPIIADDRGEIAKKLG 115

Length = 222

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 2/91 (2%)

Query: 262 EIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
            IKL D Y GK+ V F +P DFT VC TE +AF  R +EF ++NTE++  S+D  F+H+ 
Sbjct: 26  PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIK 85

Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351
           WV   +++ G+ +++ P+++D   +I+   G
Sbjct: 86  WVEWIKEKLGV-EIEFPIIADDRGEIAKKLG 115

Length = 222

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 84.9 bits (211), Expect = 5e-20
 Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 71  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
           + + LSD  GK +V +FYP D T  C  E   F D  EEF  +   V+  S DS  +H  
Sbjct: 14  ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAK 73

Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIF 180
           +     K G    L  PLLSD   K++  YGV+   +    G   ST + 
Sbjct: 74  FAE---KYG----LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLI 116

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 11/115 (9%)

Query: 65  VVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123
           + D   +E++LS++ G K +V  F+PL FT VC  E+ A  D LE F     EV+  SVD
Sbjct: 12  LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71

Query: 124 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL-TH-KISLDYGVYLSDQG-PVRGSLL 175
           S F+  AW     +E GL     PLLSD   H +++  YGV+  D G   R   +
Sbjct: 72  SPFSLRAW----AEENGLT---FPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFV 119

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 82.2 bits (204), Expect = 5e-19
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
           + + LSD  GK +V +FYP D T  C  E   F D  EEF  +   V+  S DS  +H  
Sbjct: 14  ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAK 73

Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +     K G    L  PLLSD   K++  YGV+
Sbjct: 74  FAE---KYG----LPFPLLSDPDGKLAKAYGVW 99

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score = 82.3 bits (204), Expect = 6e-19
 Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 10/107 (9%)

Query: 255 VVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313
           + D   +E++LS++ G K +V  F+PL FT VC  E+ A  D LE F     EV+  SVD
Sbjct: 12  LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71

Query: 314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL-TH-KISLDYGVYLSDQG 358
           S F+  AW     +E GL     PLLSD   H +++  YGV+  D G
Sbjct: 72  SPFSLRAW----AEENGLT---FPLLSDFWPHGEVAKAYGVFDEDLG 111

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 66  VDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           V     +IKL D Y G++ V F +P DFT VC TE  +F  + EEF ++NTE++  SVDS
Sbjct: 18  VITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSD 151
           + +H+ WV    K   + ++  P+++D
Sbjct: 78  NISHIEWVMWIEKNLKV-EVPFPIIAD 103

Length = 215

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 256 VDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           V     +IKL D Y G++ V F +P DFT VC TE  +F  + EEF ++NTE++  SVDS
Sbjct: 18  VITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSD 341
           + +H+ WV    K   + ++  P+++D
Sbjct: 78  NISHIEWVMWIEKNLKV-EVPFPIIAD 103

Length = 215

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score = 78.7 bits (195), Expect = 4e-17
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 256 VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
            D     IK  DY G  + + F +P DFT VC TE+ AF     EF + N +++  SVDS
Sbjct: 10  ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
             +H+ W+    +E    ++  P+++D   +++   G+   D G TL
Sbjct: 70  VESHIKWIEDI-EEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTL 115

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 78.4 bits (193), Expect = 5e-17
 Identities = 36/99 (36%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 322
           I LS Y GK+++ F +P DFT VC TE +AF+ R E+F ++  E+V  SVDS ++H+AW+
Sbjct: 20  IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79

Query: 323 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
               +  G+ K+  P+++D+  +++ +Y +   + G T+
Sbjct: 80  RDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATV 117

Length = 202

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 78.0 bits (192), Expect = 8e-17
 Identities = 38/104 (36%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 73  IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 132
           I LS Y GK+++ F +P DFT VC TE +AF+ R E+F ++  E+V  SVDS ++H+AW+
Sbjct: 20  IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79

Query: 133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGSLL 175
               +  G+ K+  P+++D+  +++ +Y +   + G  VRG  +
Sbjct: 80  RDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFI 122

Length = 202

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score = 77.2 bits (191), Expect = 2e-16
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 66  VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
            D     IK  DY G  + + F +P DFT VC TE+ AF     EF + N +++  SVDS
Sbjct: 10  ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG---PVRGSLLSTAIFV 181
             +H+ W+    +E    ++  P+++D   +++   G+   D G    VR      A+F+
Sbjct: 70  VESHIKWIEDI-EEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVR------AVFI 122

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 75.1 bits (184), Expect = 1e-15
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 77  DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 136
           DY GK+ V F +P DFT VC TE + F  +  +F ++NTE++  SVD  F+H+ WV   +
Sbjct: 25  DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIK 84

Query: 137 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFV 181
               +  +  P+++D   K+S   G+      P +G+    A+F+
Sbjct: 85  DNTNI-AIPFPVIADDLGKVSNQLGMI----HPGKGTNTVRAVFI 124

Length = 215

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 73.6 bits (180), Expect = 3e-15
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 326
           DY GK+ V F +P DFT VC TE + F  +  +F ++NTE++  SVD  F+H+ WV   +
Sbjct: 25  DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIK 84

Query: 327 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
               +  +  P+++D   K+S   G+    +G
Sbjct: 85  DNTNI-AIPFPVIADDLGKVSNQLGMIHPGKG 115

Length = 215

>gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 64  AVVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 122
            +V   L E+ L+D+ GK  V   +P +D T VC T+   FN    +    NT V+  S 
Sbjct: 10  TLVTSDLSEVSLADFAGKVKVISVFPSID-TPVCATQTKRFNKEAAKLD--NTVVLTISA 66

Query: 123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
           D  F    W        G+  +    LSD   H     YGV + D G     LL+ A+FV
Sbjct: 67  DLPFAQKRWCGAE----GVDNVTT--LSDFRDHSFGKAYGVLIKDLG-----LLARAVFV 115

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143

>gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 13/119 (10%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123
           +V   L ++ L+D+ GK  V   +P +D T VC T +  FN    E    NT V+  S D
Sbjct: 29  LVANDLSDVSLADFAGKRKVLNIFPSID-TGVCATSVRKFNQEAAELD--NTVVLCISAD 85

Query: 124 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
             F    +        GL  +    LSD   H     YGV +++ GP++G LL+ A+FV
Sbjct: 86  LPFAQKRFCGAE----GLENVI--TLSDFRDHSFGKAYGVAIAE-GPLKG-LLARAVFV 136

Length = 167

>gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFH 301
           V   AP +    +V   L E+ L+D+ GK  V   +P +D T VC T+   FN    +  
Sbjct: 2   VGDKAPDF---TLVTSDLSEVSLADFAGKVKVISVFPSID-TPVCATQTKRFNKEAAKLD 57

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
             NT V+  S D  F    W        G+  +    LSD   H     YGV + D G
Sbjct: 58  --NTVVLTISADLPFAQKRWCGAE----GVDNVTT--LSDFRDHSFGKAYGVLIKDLG 107

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 66  VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVA-ASVDS 124
           V    K + LSD+ GK +V  F+P  F   C  E        + +     +VVA  + + 
Sbjct: 13  VALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVAVNASND 72

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 164
            F  + +     KEG    LK P+L+D     +  YG+  
Sbjct: 73  PFFVMNFWA---KEG----LKYPVLADRDGAFTKAYGLTE 105

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 256 VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVA-ASVDS 314
           V    K + LSD+ GK +V  F+P  F   C  E        + +     +VVA  + + 
Sbjct: 13  VALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVAVNASND 72

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
            F  + +     KEG    LK P+L+D     +  YG+  
Sbjct: 73  PFFVMNFWA---KEG----LKYPVLADRDGAFTKAYGLTE 105

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 19/99 (19%)

Query: 71  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
           +++ L+D+ G+ ++ +FYP   T  C  +     D ++E  +    V+  S D       
Sbjct: 21  EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK------ 74

Query: 131 WVNTPRKEGGLGK------LKIPLLSDLTHKISLDYGVY 163
               P K   L +      L   LLSD  H+++  +GV+
Sbjct: 75  ----PEK---LSRFAEKELLNFTLLSDEDHQVAEQFGVW 106

Length = 154

>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 19/99 (19%)

Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
           +++ L+D+ G+ ++ +FYP   T  C  +     D ++E  +    V+  S D       
Sbjct: 21  EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK------ 74

Query: 321 WVNTPRKEGGLGK------LKIPLLSDLTHKISLDYGVY 353
               P K   L +      L   LLSD  H+++  +GV+
Sbjct: 75  ----PEK---LSRFAEKELLNFTLLSDEDHQVAEQFGVW 106

Length = 154

>gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 14/119 (11%)

Query: 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLE 298
           +P V   AP +    +V   L ++ L+D+ GK  V   +P +D T VC T +  FN    
Sbjct: 17  LPQVGDKAPDF---TLVANDLSDVSLADFAGKRKVLNIFPSID-TGVCATSVRKFNQEAA 72

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSD 356
           E    NT V+  S D  F    +        GL  +    LSD   H     YGV +++
Sbjct: 73  ELD--NTVVLCISADLPFAQKRFCGAE----GLENVI--TLSDFRDHSFGKAYGVAIAE 123

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.97
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.95
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.95
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.95
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.94
PRK15000	200	peroxidase; Provisional	99.94
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.94
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.94
PRK13190	202	putative peroxiredoxin; Provisional	99.94
PRK13599	215	putative peroxiredoxin; Provisional	99.93
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.93
PRK13191	215	putative peroxiredoxin; Provisional	99.93
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.93
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.93
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.93
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.93
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.93
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.93
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.93
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.93
PRK13189	222	peroxiredoxin; Provisional	99.92
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.92
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.92
PRK15000	200	peroxidase; Provisional	99.92
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.92
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.92
PRK13190	202	putative peroxiredoxin; Provisional	99.92
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.92
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.92
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.92
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.92
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.92
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.92
PRK13599	215	putative peroxiredoxin; Provisional	99.91
PRK13191	215	putative peroxiredoxin; Provisional	99.91
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.91
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.91
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.91
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.91
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.9
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.9
PRK13189	222	peroxiredoxin; Provisional	99.9
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.9
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.89
KOG0852|consensus	196		99.89
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.88
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.88
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.88
PTZ00056	199	glutathione peroxidase; Provisional	99.88
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.88
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.87
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.87
PLN02412	167	probable glutathione peroxidase	99.86
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.86
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.86
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.86
PTZ00056	199	glutathione peroxidase; Provisional	99.86
PLN02412	167	probable glutathione peroxidase	99.85
KOG0852|consensus	196		99.85
PTZ00256	183	glutathione peroxidase; Provisional	99.85
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.85
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.85
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.85
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.85
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.85
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.84
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.84
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.84
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.83
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.83
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.83
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.83
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.83
PTZ00256	183	glutathione peroxidase; Provisional	99.82
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.82
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.81
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.81
KOG0854|consensus	224		99.8
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.8
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.8
KOG0855|consensus	211		99.8
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.8
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.79
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.78
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.77
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.77
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.76
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.75
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.74
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.73
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.73
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.73
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.72
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.71
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.71
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.7
KOG0855|consensus	211		99.7
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.69
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.66
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.66
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.66
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.63
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.61
KOG0854|consensus	224		99.61
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.6
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.57
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.56
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.55
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	99.41
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.39
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.37
KOG0541|consensus	171		99.34
KOG2792|consensus	280		99.33
KOG2501|consensus	157		99.25
KOG2792|consensus	280		99.24
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.21
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.21
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.2
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.07
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.05
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.04
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	99.04
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.02
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.98
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.97
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.93
KOG2501|consensus	157		98.92
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.91
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.9
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.87
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.8
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.79
KOG0541|consensus	171		98.79
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.75
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.72
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.71
PRK09381	109	trxA thioredoxin; Provisional	98.7
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.69
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.66
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.65
PTZ00051	98	thioredoxin; Provisional	98.63
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.62
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.62
KOG1651|consensus	171		98.61
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.61
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.61
KOG0907|consensus	106		98.59
PHA02278	103	thioredoxin-like protein	98.58
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.57
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.57
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.56
KOG0910|consensus	150		98.55
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.55
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.55
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.55
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.55
PRK10996	139	thioredoxin 2; Provisional	98.54
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.54
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.53
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.53
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.51
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.51
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.5
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.5
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.5
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.48
KOG1651|consensus	171		98.48
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.47
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.44
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.42
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.41
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.37
PRK09381	109	trxA thioredoxin; Provisional	98.37
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.36
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.3
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.29
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.29
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.29
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.27
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.25
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.25
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.24
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.24
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.24
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.24
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.23
PRK10996	139	thioredoxin 2; Provisional	98.23
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.19
PTZ00051	98	thioredoxin; Provisional	98.19
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.17
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.17
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.17
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.16
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.16
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.14
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.14
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	98.14
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.14
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.13
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.11
PF13728	215	TraF: F plasmid transfer operon protein	98.1
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.1
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.08
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.07
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	98.03
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.03
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.03
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	98.02
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.02
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.0
KOG0907|consensus	106		97.99
KOG0910|consensus	150		97.99
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.98
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.98
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.96
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.95
PF13728	215	TraF: F plasmid transfer operon protein	97.95
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	97.88
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.87
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.86
PHA02278	103	thioredoxin-like protein	97.85
PTZ00102	477	disulphide isomerase; Provisional	97.85
PLN02309	457	5'-adenylylsulfate reductase	97.84
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.84
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.83
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.81
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.81
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.78
PTZ00102	477	disulphide isomerase; Provisional	97.77
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.76
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.76
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.73
PTZ00062	204	glutaredoxin; Provisional	97.7
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.69
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.65
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.65
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.6
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.59
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.58
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.58
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.56
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.55
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.54
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	97.54
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.53
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.49
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.48
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.47
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.47
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.46
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.46
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.45
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.44
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.4
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	97.39
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.36
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.36
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.35
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.34
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.34
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.32
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.31
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.3
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.2
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.18
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	97.18
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	97.15
KOG0191|consensus	383		97.14
PLN02309	457	5'-adenylylsulfate reductase	97.11
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.04
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	97.01
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	96.97
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.94
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.93
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.92
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	96.9
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	96.84
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	96.83
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	96.82
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	96.78
PHA02125	75	thioredoxin-like protein	96.77
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	96.66
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.65
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.64
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	96.56
smart00594	122	UAS UAS domain.	96.51
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	96.43
KOG0908|consensus	288		96.42
KOG4498|consensus	197		96.4
KOG0908|consensus	288		96.29
PTZ00062	204	glutaredoxin; Provisional	96.12
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.0
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	95.56
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	95.47
KOG4498|consensus	197		95.42
PHA02125	75	thioredoxin-like protein	95.4
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	94.92
KOG1278|consensus	628		94.87
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	94.65
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	94.64
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	94.49
smart00594	122	UAS UAS domain.	94.37
COG2143	182	Thioredoxin-related protein [Posttranslational mod	93.98
KOG0190|consensus	493		93.7
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	93.6
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	93.47
KOG0190|consensus	493		93.01
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	92.92
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	92.73
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	92.41
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	92.2
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	91.86
COG2143	182	Thioredoxin-related protein [Posttranslational mod	91.79
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	91.73
KOG1277|consensus	593		91.48
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	91.41
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	91.22
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	91.02
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	90.74
KOG0912|consensus	375		90.72
KOG3425|consensus	128		90.7
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	90.7
KOG0191|consensus	383		89.97
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	89.93
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	89.83
PF07976	169	Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim	89.77
COG3054	184	Predicted transcriptional regulator [General funct	89.72
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	89.65
COG3054	184	Predicted transcriptional regulator [General funct	89.46
KOG3425|consensus	128		89.3
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	89.03
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	88.95
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	88.76
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	88.55
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	88.38
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	88.2
TIGR03765	105	ICE_PFL_4695 integrating conjugative element prote	88.19
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	87.75
KOG1731|consensus	606		87.7
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	87.62
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	87.48
PRK11200	85	grxA glutaredoxin 1; Provisional	87.44
PRK11200	85	grxA glutaredoxin 1; Provisional	87.38
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	86.62
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	86.43
PF11072	142	DUF2859: Protein of unknown function (DUF2859); In	86.22
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	85.23
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	83.25
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	82.73
KOG0912|consensus	375		81.81
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	81.66
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	81.51
cd02979	167	PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami	80.49
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	80.39

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-30  Score=216.30  Aligned_cols=134  Identities=29%  Similarity=0.390  Sum_probs=120.2

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      +++++|++||||+|++.   +|++++|+|++||+|||+|||.+++|.|..|+..|++.+++|++.|++|+|||+|+++++
T Consensus         2 ~~l~~G~~aPdF~Lp~~---~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~   78 (157)
T COG1225           2 MMLKVGDKAPDFELPDQ---DGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH   78 (157)
T ss_pred             CcCCCCCcCCCeEeecC---CCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence            46789999999999876   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCC-cccceeEEEEEEEecCCCccccc
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP-VRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~-~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      ++|++.   +    +++||+|+|.+++++++|||+..+... .....+.|++||||++|+|+...
T Consensus        79 ~~F~~k---~----~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~  136 (157)
T COG1225          79 KKFAEK---H----GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW  136 (157)
T ss_pred             HHHHHH---h----CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence            999995   3    899999999999999999998766422 12234568999999999998554

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.9e-28  Score=204.88  Aligned_cols=150  Identities=42%  Similarity=0.711  Sum_probs=134.3

Q ss_pred             cccCCCCCCccEEEeeecCcc--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ++.+|+++|+|+.++.. +++  .+++|+++.|||+||+|||++++|+|++|+..+++.|++|++.|++||+||+|+.++
T Consensus         2 ~~lIg~~aP~F~~~a~~-~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fs   80 (194)
T COG0450           2 MSLIGKKAPDFTANAVL-GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS   80 (194)
T ss_pred             ccccCCcCCCcEEEEEe-cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHH
Confidence            45799999999998874 222  499999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcccee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIR  207 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~  207 (384)
                      +.+|.+..+++.+.++++||+++|.+++++++||+..+++|     .+-|++|||||+|+||.   ..+|+...||+...
T Consensus        81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g-----~a~R~~FIIDp~g~ir~---~~v~~~~iGRn~dE  152 (194)
T COG0450          81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEG-----LALRGTFIIDPDGVIRH---ILVNPLTIGRNVDE  152 (194)
T ss_pred             HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCC-----cceeEEEEECCCCeEEE---EEEecCCCCcCHHH
Confidence            99999998888888789999999999999999999887755     36789999999999964   57788888998654


Q ss_pred             e
Q psy17178        208 H  208 (384)
Q Consensus       208 ~  208 (384)
                      .
T Consensus       153 i  153 (194)
T COG0450         153 I  153 (194)
T ss_pred             H
Confidence            4

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.95  E-value=8.9e-28  Score=209.25  Aligned_cols=143  Identities=31%  Similarity=0.552  Sum_probs=123.5

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  130 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~  130 (384)
                      +.+|+++|+|+.+.+.+++..+++|++++||++||+|||++|||+|+.|++.|++++++|++.|+++++||.|+++.+++
T Consensus         2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a   81 (187)
T PRK10382          2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA   81 (187)
T ss_pred             CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence            46999999999999877888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      |.+..++   ..+++||+++|++++++++||++.+..|     ...|++||||++|+|+....   ++...+++
T Consensus        82 ~~~~~~~---~~~l~fpllsD~~~~ia~~ygv~~~~~g-----~~~r~tfIID~~G~I~~~~~---~~~~~~~~  144 (187)
T PRK10382         82 WHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG-----LADRATFVVDPQGIIQAIEV---TAEGIGRD  144 (187)
T ss_pred             HHHhhcc---ccCCceeEEEcCchHHHHHcCCCcccCC-----ceeeEEEEECCCCEEEEEEE---eCCCCCCC
Confidence            9975322   1368999999999999999999765433     35699999999999986533   34445554

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.5e-27  Score=198.10  Aligned_cols=131  Identities=32%  Similarity=0.435  Sum_probs=121.7

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      +.+|+.+|+|+|+   |++|+.++|+|++||+|||+|||..++|.|..|+..++..+++|++.|.+|++||+|+++++++
T Consensus         4 l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~   80 (157)
T COG1225           4 LKVGDKAPDFELP---DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK   80 (157)
T ss_pred             CCCCCcCCCeEee---cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence            4689999999998   7799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C----ceeeEEEEEeCCceEEEEEecCC
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~----~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      |++++       +++|++++|++++++++||++..+.  |    ...|+|||||++|+|+++|+...
T Consensus        81 F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~  140 (157)
T COG1225          81 FAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVK  140 (157)
T ss_pred             HHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCC
Confidence            99987       9999999999999999999987543  1    36799999999999999996543

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.94  E-value=2.9e-26  Score=208.14  Aligned_cols=150  Identities=37%  Similarity=0.672  Sum_probs=124.3

Q ss_pred             cccccccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         46 TTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        46 ~~~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ....++.+|+++|+|+++++.++++++++|+++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+
T Consensus        63 ~~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds  142 (261)
T PTZ00137         63 NTVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS  142 (261)
T ss_pred             cccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            334566899999999998744556678999998 8999999999999999999999999999999999999999999999


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      ++.+++|.+...+..+..+++||+++|++++++++||++.. .|     ...|++||||++|+|+...   +++...+++
T Consensus       143 ~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g-----~a~R~tFIID~dG~I~~~~---~~~~~~gr~  213 (261)
T PTZ00137        143 PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EG-----FSHRASVLVDKAGVVKHVA---VYDLGLGRS  213 (261)
T ss_pred             HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CC-----ceecEEEEECCCCEEEEEE---EeCCCCCCC
Confidence            99999998743232223378999999999999999999653 22     4578999999999997543   355666665

>PRK15000 peroxidase; Provisional

Probab=99.94  E-value=2.6e-26  Score=202.83  Aligned_cols=145  Identities=36%  Similarity=0.630  Sum_probs=119.7

Q ss_pred             cCCCCCCccEEEeeecCccc---eEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~---~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      .+|+++|+|++++. .++|+   .++|+++ +||++||+|||++|||+|++|+++|++++++|+++|++|++||.|+.+.
T Consensus         3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~   81 (200)
T PRK15000          3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV   81 (200)
T ss_pred             cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            48999999999875 22344   4567777 8999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      +++|.+.+.+..+.++++||+++|+++++++.||+...+.|     ...|++||||++|+|+....   ++...+|+.
T Consensus        82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g-----~~~r~tfiID~~G~I~~~~~---~~~~~gr~~  151 (200)
T PRK15000         82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG-----VALRGSFLIDANGIVRHQVV---NDLPLGRNI  151 (200)
T ss_pred             HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCC-----cEEeEEEEECCCCEEEEEEe---cCCCCCCCH
Confidence            99998764444333357999999999999999999765533     45799999999999986543   455666663

>TIGR03137 AhpC peroxiredoxin

Probab=99.94  E-value=2.3e-26  Score=201.63  Aligned_cols=134  Identities=34%  Similarity=0.633  Sum_probs=113.9

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      .+|+++|+|+++++.++....+++++++||++||+|||++|||+|+.|++.|++++++|++.|++|++||.|+.+.+++|
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~   82 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW   82 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence            58999999999874233334789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      .+.....   .+++||+++|++++++++||++....|     ...|++||||++|+|+....
T Consensus        83 ~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g-----~~~p~tfiID~~G~I~~~~~  136 (187)
T TIGR03137        83 HDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAG-----LADRGTFVIDPEGVIQAVEI  136 (187)
T ss_pred             Hhhhhhc---cCcceeEEECCccHHHHHhCCcccCCC-----ceeeEEEEECCCCEEEEEEE
Confidence            8753111   268899999999999999999765422     34689999999999986554

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.94  E-value=1.4e-25  Score=195.55  Aligned_cols=135  Identities=29%  Similarity=0.503  Sum_probs=122.0

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  321 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~  321 (384)
                      .+|.++|+|+.+.+.+.+...++|++++||++||+||+++|||+|..|++.|++++++|++.|++|++||.|+++.+++|
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~   82 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW   82 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence            58999999999998777888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+..+..   .+++||+++|+++.++++||+.....+...|++||||++|+|++.+..
T Consensus        83 ~~~~~~~---~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~  137 (187)
T PRK10382         83 HSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT  137 (187)
T ss_pred             HHhhccc---cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence            9764321   268999999999999999999765555667999999999999998864

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.94  E-value=3.9e-26  Score=202.39  Aligned_cols=142  Identities=30%  Similarity=0.568  Sum_probs=120.0

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  130 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~  130 (384)
                      +.+|+.+|+|++++.   +| .++|++++||++||+|||++|||+|+.|++.|++++++|+++|+++++||.|+.+.+.+
T Consensus         2 ~~vG~~aP~F~~~~~---~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~   77 (202)
T PRK13190          2 VKLGQKAPDFTVNTT---KG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA   77 (202)
T ss_pred             CCCCCCCCCcEEecC---CC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            569999999999875   55 79999999999999888899999999999999999999999999999999999999999


Q ss_pred             hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      |.+.+.+..+. .++||+++|++++++++||+.....|     ...|++||||++|+|+...   .++...|++.
T Consensus        78 w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g-----~~~p~~fiId~~G~I~~~~---~~~~~~gr~~  143 (202)
T PRK13190         78 WLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSG-----ATVRGVFIIDPNQIVRWMI---YYPAETGRNI  143 (202)
T ss_pred             HHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCC-----cEEeEEEEECCCCEEEEEE---EeCCCCCCCH
Confidence            98765443221 36899999999999999999765433     3568999999999998543   4666677763

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.93  E-value=5.6e-26  Score=202.48  Aligned_cols=143  Identities=28%  Similarity=0.452  Sum_probs=121.6

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      .+|+++|+|++++.   +|+...+++++||++||+|+|++|||+|..|++.|++++++|+++|+++++||.|+.+.+++|
T Consensus         3 ~~Gd~aPdF~l~t~---~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w   79 (215)
T PRK13599          3 LLGEKFPSMEVVTT---QGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW   79 (215)
T ss_pred             CCCCCCCCCEeECC---CCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            68999999999876   888888899999999888888999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      .+.+++..+ .+++||+++|++++++++||+.....    +....|++||||++|+|+..   ..||...+++.
T Consensus        80 ~~~i~~~~~-~~i~fPil~D~~~~va~~yg~~~~~~----~~~~~R~tfIID~dG~Ir~~---~~~p~~~gr~~  145 (215)
T PRK13599         80 VEWIKDNTN-IAIPFPVIADDLGKVSNQLGMIHPGK----GTNTVRAVFIVDDKGTIRLI---MYYPQEVGRNV  145 (215)
T ss_pred             HHhHHHhcC-CCCceeEEECCCchHHHHcCCCccCC----CCceeeEEEEECCCCEEEEE---EEcCCCCCCCH
Confidence            876543211 26899999999999999999975432    22356999999999999865   45677777763

>TIGR03137 AhpC peroxiredoxin

Probab=99.93  E-value=2.7e-25  Score=194.94  Aligned_cols=133  Identities=33%  Similarity=0.540  Sum_probs=116.6

Q ss_pred             CCCCCCCCceeeeEEcCcce--eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLK--EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~--~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+|+.+|+|+++++  .+|+  .+++++++||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.++
T Consensus         3 ~~G~~aP~f~l~~~--~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~   80 (187)
T TIGR03137         3 LINTEIKPFKATAY--HNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHK   80 (187)
T ss_pred             ccCCcCCCcEeeec--cCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHH
Confidence            57999999999853  2454  7899999999999999999999999999999999999999999999999999998888


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.+.....   .+++||+++|+++.+++.||++....+...|++||||++|+|++.+..
T Consensus        81 ~~~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~  137 (187)
T TIGR03137        81 AWHDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT  137 (187)
T ss_pred             HHHhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence            888764222   168899999999999999999766555678999999999999998864

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.93  E-value=1.5e-25  Score=199.82  Aligned_cols=144  Identities=29%  Similarity=0.469  Sum_probs=119.8

Q ss_pred             cccCCCCCCccEEEeeecCccceEEc-cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l-~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++.+|+++|+|++++.   +|+ +++ ++++||++||+|||++|||+|.+|++.|++++++|+++|++|++||+|+.+.+
T Consensus         6 ~~~iG~~aPdF~l~~~---~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h   81 (215)
T PRK13191          6 IPLIGEKFPEMEVITT---HGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH   81 (215)
T ss_pred             cccCCCcCCCCEeecC---CCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            5679999999999876   776 556 55799999998999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      ++|.+..++..+. +++||+++|.+++++++||++....    +....|++||||++|+|+...   +++...||+.
T Consensus        82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~----~~~~~r~tfIID~~G~Ir~~~---~~~~~~gr~~  150 (215)
T PRK13191         82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAES----STATVRAVFIVDDKGTVRLIL---YYPMEIGRNI  150 (215)
T ss_pred             HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCccccc----CCceeEEEEEECCCCEEEEEE---ecCCCCCCCH
Confidence            9998765432222 6899999999999999999976431    124568999999999997543   4566777763

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.93  E-value=1.8e-25  Score=193.90  Aligned_cols=138  Identities=55%  Similarity=0.945  Sum_probs=116.7

Q ss_pred             CCCCCCccEEEeeec-CccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         53 LSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~-~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      +|+++|+|++++..+ ++|+.++|++++||++||+||+++|||+|..+++.|++++++|++.|+++++||.|+.+..++|
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~   80 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW   80 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence            699999999998732 3348999999999999999999999999999999999999999999999999999998888888


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .+...+..+.++++||+++|.+++++++||++..+.|     ...|++||||++|+|++...+.
T Consensus        81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~-----~~~p~~~lID~~G~I~~~~~~~  139 (173)
T cd03015          81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEG-----VALRGTFIIDPEGIIRHITVND  139 (173)
T ss_pred             HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCC-----ceeeEEEEECCCCeEEEEEecC
Confidence            8765331112368999999999999999999766522     3457899999999999776554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.93  E-value=1.7e-25  Score=198.26  Aligned_cols=147  Identities=41%  Similarity=0.788  Sum_probs=121.1

Q ss_pred             ccCCCCCCccEEEee-ecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         51 KNLSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~-~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      +.+|+++|+|++.++ .+++|++++|++++||+++|+|||++|||+|+.++++|++++++|+++|++|++||.|+.+.+.
T Consensus         6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~   85 (199)
T PTZ00253          6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHL   85 (199)
T ss_pred             cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence            469999999998764 2567889999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      +|....+...+.+.++||+++|.+++++++||++..+.|     ...|++||||++|+|+....+   +...+++.
T Consensus        86 ~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g-----~~~r~~fiID~~G~i~~~~~~---~~~~~r~~  153 (199)
T PTZ00253         86 QWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG-----VAYRGLFIIDPKGMLRQITVN---DMPVGRNV  153 (199)
T ss_pred             HHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCC-----ceEEEEEEECCCCEEEEEEec---CCCCCCCH
Confidence            886532222123358999999999999999999766533     345899999999999864433   33456653

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.93  E-value=5.3e-25  Score=190.99  Aligned_cols=137  Identities=57%  Similarity=0.922  Sum_probs=118.1

Q ss_pred             CCCCCCCceeeeEEc-CcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178        243 VSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  321 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d-~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~  321 (384)
                      +|+.+|+|+++++.+ ++|+.+++++++||++||+||+++|||.|+.+++.|++++++|+++|++|++||.|+.+..++|
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~   80 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW   80 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence            589999999996621 2338999999999999999999999999999999999999999999999999999998877888


Q ss_pred             hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+...+..+..+++|+++.|+++++++.||++..+.+...|++||||++|+|++++..
T Consensus        81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~  138 (173)
T cd03015          81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVN  138 (173)
T ss_pred             HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEec
Confidence            8775432212268999999999999999999766656678999999999999999853

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.93  E-value=1.6e-25  Score=188.09  Aligned_cols=127  Identities=30%  Similarity=0.402  Sum_probs=112.1

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  132 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~  132 (384)
                      +|+++|+|++++.   +|++++|++++||++||+||+++|||+|+.+++.|+++++++  .|+.+++||.|+.+.+++|.
T Consensus         2 ~G~~aP~f~l~~~---~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~   76 (143)
T cd03014           2 VGDKAPDFTLVTS---DLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWC   76 (143)
T ss_pred             CCCCCCCcEEECC---CCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHH
Confidence            7999999999877   899999999999999999998888999999999999999998  38999999999999999998


Q ss_pred             cCccccCCCCc-cceeEEeeCc-chhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        133 NTPRKEGGLGK-LKIPLLSDLT-HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       133 ~~~~~~~~~~~-~~~p~l~D~~-~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +.+       + .+||+++|.. ++++++||++.+..|     ...|++||||++|+|+....|..
T Consensus        77 ~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~-----~~~~~~~iid~~G~I~~~~~~~~  130 (143)
T cd03014          77 GAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLG-----LLARAVFVIDENGKVIYVELVPE  130 (143)
T ss_pred             Hhc-------CCCCceEeecCcccHHHHHhCCeeccCC-----ccceEEEEEcCCCeEEEEEECCC
Confidence            854       4 3799999996 999999999765432     34688999999999998776654

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.7e-25  Score=185.48  Aligned_cols=138  Identities=44%  Similarity=0.751  Sum_probs=128.8

Q ss_pred             CCCCCCCCCceeeeEEcCcc---eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDGQL---KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g---~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      ..+|+++|+|+.+++.  .|   .+++++++.||++|++||++..+++|+.|+..+++.|++|+++|++|++||+|+..+
T Consensus         3 ~lIg~~aP~F~~~a~~--~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fs   80 (194)
T COG0450           3 SLIGKKAPDFTANAVL--GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS   80 (194)
T ss_pred             cccCCcCCCcEEEEEe--cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHH
Confidence            4689999999999873  45   499999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +.+|.+..++..++++++||+++|.+++++++||+..++.|.+.+++||||++|+|++.....
T Consensus        81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~  143 (194)
T COG0450          81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNP  143 (194)
T ss_pred             HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEec
Confidence            999999988888887899999999999999999999888888999999999999999987653

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.93  E-value=6.8e-25  Score=179.50  Aligned_cols=124  Identities=25%  Similarity=0.353  Sum_probs=114.4

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  322 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~  322 (384)
                      +|+++|+|+++   |.+|+.+++++++||++||+||+++|||.|..+++.|++++++++++++++++|+.|+++.+++|.
T Consensus         1 vG~~~P~f~l~---~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~   77 (124)
T PF00578_consen    1 VGDKAPDFTLT---DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL   77 (124)
T ss_dssp             TTSBGGCEEEE---TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred             CcCCCCCcEeE---CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence            68999999999   559999999999999999999966699999999999999999999999999999999999999999


Q ss_pred             cCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        323 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      +..       +++||++.|+++.+.+.||+.........|++||||++|+|+|.
T Consensus        78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   78 EEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             hhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            987       79999999999999999999655433589999999999999984

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.93  E-value=3.7e-25  Score=190.59  Aligned_cols=131  Identities=29%  Similarity=0.393  Sum_probs=111.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      .+.+|+++|+|++++.   +|+.++|++++||++||+|||++|||+|..|+|.|+++++++  .|++|++||.|+++.++
T Consensus        17 ~~~~G~~~P~f~l~~~---~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~   91 (167)
T PRK00522         17 LPQVGDKAPDFTLVAN---DLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQK   91 (167)
T ss_pred             CCCCCCCCCCeEEEcC---CCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHH
Confidence            4569999999999876   899999999999999999998888999999999999999998  38999999999999999


Q ss_pred             hhccCccccCCCCccc-eeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        130 AWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +|.+..       +++ +++++|. .+.++++||+...+.. ..| ...|++||||++|+|+....+
T Consensus        92 ~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~-~~g-~~~r~tfvId~~G~I~~~~~~  149 (167)
T PRK00522         92 RFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGP-LKG-LLARAVFVLDENNKVVYSELV  149 (167)
T ss_pred             HHHHhC-------CCCCceEeecCCccHHHHHhCCeecccc-cCC-ceeeEEEEECCCCeEEEEEEC
Confidence            999853       665 8999995 5699999999754410 122 467899999999999866543

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.93  E-value=9.6e-25  Score=198.21  Aligned_cols=139  Identities=37%  Similarity=0.659  Sum_probs=120.3

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      .+.+|+.+|+|+++++.+++++.++++++ +||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.+
T Consensus        67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h  146 (261)
T PTZ00137         67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSH  146 (261)
T ss_pred             cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            34689999999998643566678999998 89999999999999999999999999999999999999999999999889


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+...+..+..+++||+++|++++++++||+... .|...|++||||++|+|++.+..
T Consensus       147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~  206 (261)
T PTZ00137        147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVY  206 (261)
T ss_pred             HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEe
Confidence            9998754333333378999999999999999999653 35678999999999999998854

>PRK13189 peroxiredoxin; Provisional

Probab=99.92  E-value=4.5e-25  Score=197.97  Aligned_cols=144  Identities=29%  Similarity=0.529  Sum_probs=120.0

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++.+|+++|+|++++.   +| .++++++ +||++||+|||++|||+|.+|++.|++++++|+++|++|++||+|+.+.+
T Consensus         8 ~~~vG~~aPdF~~~~~---~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h   83 (222)
T PRK13189          8 MPLIGDKFPEFEVKTT---HG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH   83 (222)
T ss_pred             cccCCCcCCCcEeEcC---CC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence            4569999999999886   66 4788875 99999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      .+|.+.+.+..+. +++||+++|.+++++++||+.....+    ....|++||||++|+|+...   +++...++++
T Consensus        84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~----~~~~r~tfIID~~G~Ir~~~---~~~~~~gr~~  152 (222)
T PRK13189         84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKG----TNTVRAVFIIDPKGIIRAIL---YYPQEVGRNM  152 (222)
T ss_pred             HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccC----CCceeEEEEECCCCeEEEEE---ecCCCCCCCH
Confidence            9999865443222 57999999999999999999654311    12568999999999998654   4566677764

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.92  E-value=3.2e-25  Score=181.47  Aligned_cols=123  Identities=23%  Similarity=0.379  Sum_probs=112.2

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  132 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~  132 (384)
                      +|+++|+|++++.   +|+.++|++++||++||+||+++|||.|..++++|++++++++++|+++++|+.|+.+.+++|.
T Consensus         1 vG~~~P~f~l~~~---~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~   77 (124)
T PF00578_consen    1 VGDKAPDFTLTDS---DGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL   77 (124)
T ss_dssp             TTSBGGCEEEETT---TSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred             CcCCCCCcEeECC---CCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence            6999999999877   9999999999999999999977799999999999999999999999999999999999999999


Q ss_pred             cCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       133 ~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      +..       +++||+++|.++++++.||+....     .....|++||||++|+|++
T Consensus        78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   78 EEY-------GLPFPVLSDPDGELAKAFGIEDEK-----DTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             HHH-------TCSSEEEEETTSHHHHHTTCEETT-----TSEESEEEEEEETTSBEEE
T ss_pred             hhh-------ccccccccCcchHHHHHcCCcccc-----CCceEeEEEEECCCCEEEe
Confidence            854       789999999999999999996543     2346789999999999975

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.92  E-value=5.4e-25  Score=186.93  Aligned_cols=134  Identities=22%  Similarity=0.281  Sum_probs=114.1

Q ss_pred             CCCCCCccEEEeeecCccceEEccc-cCCCeEEEEEeeCCCCCCchHH-HHHHHHhHHHHHhCCc-EEEEEeCCCHHhHH
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSHFTHL  129 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~-~~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~v-~vi~Vs~d~~~~~~  129 (384)
                      +|+++|+|++++..+++|++++|++ ++||++||+|||+.|||+|..| ++.|++.+++|++.|+ +|++||.|+++.++
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~   80 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK   80 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence            6999999999886333489999999 5999999999999999999999 9999999999999999 69999999999999


Q ss_pred             hhccCccccCCCCcc--ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        130 AWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +|++..       ++  +||+++|++++++++||++....-...+....|++|||| +|+|+.....
T Consensus        81 ~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~  139 (155)
T cd03013          81 AWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVE  139 (155)
T ss_pred             HHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEe
Confidence            999864       54  899999999999999999865420001234579999999 7999865443

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK15000 peroxidase; Provisional

Probab=99.92  E-value=1.6e-24  Score=191.32  Aligned_cols=137  Identities=37%  Similarity=0.660  Sum_probs=118.0

Q ss_pred             CCCCCCCCceeeeEEcCcce---eeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        242 FVSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~---~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      .+|+.+|+|+++++ ..+|+   .++++++ +||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.
T Consensus         3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~   81 (200)
T PRK15000          3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV   81 (200)
T ss_pred             cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            47999999999865 23444   4566666 8999999999889999999999999999999999999999999999998


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|.+...+..+..+++||+++|+++++++.||+...+.|...|++||||++|+|++.+..
T Consensus        82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~  143 (200)
T PRK15000         82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVN  143 (200)
T ss_pred             HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEec
Confidence            89998765444443357999999999999999999776666789999999999999998764

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.92  E-value=1.3e-24  Score=183.75  Aligned_cols=130  Identities=34%  Similarity=0.520  Sum_probs=117.7

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      .+|+.+|+|++.+   .+|+.+++++++| |++||+||+++||+.|+.+++.|++++++++++++++++||.|+++.+++
T Consensus         2 ~~G~~~p~~~l~~---~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~   78 (149)
T cd03018           2 EVGDKAPDFELPD---QNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA   78 (149)
T ss_pred             CCCCcCCCcEecC---CCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence            5799999999984   4899999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCc--hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      |++++       +++|++++|.+  +++++.||+...+.+.+.|++||||++|+|++.+....
T Consensus        79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          79 WAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             HHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence            99876       78999999987  99999999976554556779999999999999887643

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.92  E-value=2e-24  Score=191.40  Aligned_cols=139  Identities=42%  Similarity=0.775  Sum_probs=120.9

Q ss_pred             CCCCCCCCCceeeeE-EcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l-~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +.+|+.+|+|++.++ .+.+|+.+++++++||++||+||+++||++|+.+++.|++++++|+++|++|++||.|+.+...
T Consensus         6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~   85 (199)
T PTZ00253          6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHL   85 (199)
T ss_pred             cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence            358999999998863 2567889999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|....+...+.++++||+++|+++++++.||++..+.+...|++||||++|+|++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~  145 (199)
T PTZ00253         86 QWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVN  145 (199)
T ss_pred             HHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence            886543333333358999999999999999999876666678999999999999998764

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.92  E-value=2e-24  Score=191.41  Aligned_cols=133  Identities=29%  Similarity=0.548  Sum_probs=116.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      +.+|+.+|+|++.+.   +| .+++++++||++||+|++++|||+|+.|++.|++++++|+++|++|++||.|+.+..++
T Consensus         2 ~~vG~~aP~F~~~~~---~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~   77 (202)
T PRK13190          2 VKLGQKAPDFTVNTT---KG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA   77 (202)
T ss_pred             CCCCCCCCCcEEecC---CC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            368999999999844   66 69999999999888777799999999999999999999999999999999999999889


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      |++.+.+..+. .++||+++|+++.++++||+.....|...|++||||++|+|++++.
T Consensus        78 w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~  134 (202)
T PRK13190         78 WLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIY  134 (202)
T ss_pred             HHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEE
Confidence            98776443322 3689999999999999999976655667999999999999998774

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.92  E-value=7.5e-25  Score=186.45  Aligned_cols=137  Identities=18%  Similarity=0.275  Sum_probs=117.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      .+.+|+++|+|++++.   +|+.++|++++||++||+||+++|||.|+.+++.|++++++++++|+++|+||.|+++.++
T Consensus         3 ~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~   79 (154)
T PRK09437          3 PLKAGDIAPKFSLPDQ---DGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS   79 (154)
T ss_pred             cCCCCCcCCCcEeeCC---CCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            4578999999999887   8999999999999999999988999999999999999999999999999999999999999


Q ss_pred             hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccc-eeEEEEEEEecCCCcccccceee
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS-LLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~-~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|.+..       +++||++.|+++.++++||+...+.....+. ...+++||||++|+|+....|..
T Consensus        80 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~  140 (154)
T PRK09437         80 RFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFK  140 (154)
T ss_pred             HHHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence            998753       7899999999999999999976542110111 12257899999999998877643

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.92  E-value=3e-24  Score=180.42  Aligned_cols=125  Identities=27%  Similarity=0.356  Sum_probs=112.1

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  322 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~  322 (384)
                      +|+.+|+|+++   |.+|+.+++++++||++||+||++.|||+|+.+++.|+++++++  .|+.|++||.|+++.+++|.
T Consensus         2 ~G~~aP~f~l~---~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~   76 (143)
T cd03014           2 VGDKAPDFTLV---TSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWC   76 (143)
T ss_pred             CCCCCCCcEEE---CCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHH
Confidence            68999999998   55999999999999999999997777999999999999999998  48999999999999999999


Q ss_pred             cCccccCCCCC-cceeEEecCc-hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        323 NTPRKEGGLGK-LKIPLLSDLT-HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       323 ~~~~~~~~~~~-~~~~~~~D~~-~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+       + .++++++|.. +.++++||++....+...|++||||++|+|++.+..
T Consensus        77 ~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~  128 (143)
T cd03014          77 GAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELV  128 (143)
T ss_pred             Hhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence            876       4 3799999996 999999999876555668999999999999998863

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.92  E-value=2e-24  Score=182.10  Aligned_cols=131  Identities=23%  Similarity=0.308  Sum_probs=113.0

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCC-CCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLD-FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~-~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      ++|+.+|+|++++. +.+|+++++++++||++||+|| ++ |||+|..++|.|++++++++++++.+++|+.++.....+
T Consensus         1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~   78 (146)
T PF08534_consen    1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE   78 (146)
T ss_dssp             STTSB--CCEEEEE-ETTSEEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred             CCCCCCCCeEEEee-cCCCCEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence            47999999999754 5799999999999999999999 66 999999999999999999999999999999987666888


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEecCC
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      |+++.       +.+|+++.|+++.++++||+.....   +..+|+++|||++|+|++++....
T Consensus        79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~  135 (146)
T PF08534_consen   79 FLKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD  135 (146)
T ss_dssp             HHHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred             HHHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence            88875       8999999999999999999842221   237999999999999999887543

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.92  E-value=7.6e-25  Score=185.27  Aligned_cols=131  Identities=34%  Similarity=0.518  Sum_probs=116.1

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      +++|+++|+|++.+.   +|+.+++++++| |++||+||+++|||.|+.+++.|++++++++++|+++++||.|+++.++
T Consensus         1 ~~~G~~~p~~~l~~~---~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~   77 (149)
T cd03018           1 LEVGDKAPDFELPDQ---NGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR   77 (149)
T ss_pred             CCCCCcCCCcEecCC---CCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence            468999999999877   899999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             hhccCccccCCCCccceeEEeeCc--chhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~--~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|.+..       +++||+++|.+  +++++.||+.....    + ...+++||||++|+|++...|..
T Consensus        78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~----~-~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDL----G-VAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             HHHHhc-------CCCceEecCCCchhHHHHHhCCccccC----C-CccceEEEECCCCEEEEEEecCC
Confidence            998753       78999999988  99999999975442    2 34568899999999997766654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.92  E-value=5.8e-24  Score=183.11  Aligned_cols=128  Identities=27%  Similarity=0.363  Sum_probs=112.5

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+.+|+.+|+|++.   |.+|+.+++++++||++||+||++.|||+|..|++.|+++++++  .+++|++||.|+++.+
T Consensus        16 ~~~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~   90 (167)
T PRK00522         16 SLPQVGDKAPDFTLV---ANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQ   90 (167)
T ss_pred             CCCCCCCCCCCeEEE---cCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHH
Confidence            345689999999998   55999999999999999999995555999999999999999998  4899999999999999


Q ss_pred             HHHhcCccccCCCCCcc-eeEEec-CchHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKLK-IPLLSD-LTHKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~-~~~~~D-~~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++|.+.+       +++ +++++| +++.+++.||+...+   .|...|++||||++|+|++.+.
T Consensus        91 ~~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~  148 (167)
T PRK00522         91 KRFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL  148 (167)
T ss_pred             HHHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence            9999876       665 799999 456999999997654   4567889999999999999885

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.92  E-value=1.7e-24  Score=192.21  Aligned_cols=141  Identities=28%  Similarity=0.477  Sum_probs=117.4

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      +|+++|+|++++.   +| .++|++++| |++||+|++++|||+|..|++.|++++++|+++|+++++||.|+.+.+++|
T Consensus         1 vG~~aP~F~~~~~---~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~   76 (203)
T cd03016           1 LGDTAPNFEADTT---HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW   76 (203)
T ss_pred             CcCCCCCeEEecC---CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence            5899999999876   65 599999999 788888888999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      .+.+++..+ .+++||+++|++++++++||+.....+  .+ ...|++||||++|+|+....   ++...+++
T Consensus        77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~--~~-~~~r~~fiID~~G~I~~~~~---~~~~~gr~  142 (203)
T cd03016          77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAG--ST-LTVRAVFIIDPDKKIRLILY---YPATTGRN  142 (203)
T ss_pred             HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCC--CC-ceeeEEEEECCCCeEEEEEe---cCCCCCCC
Confidence            887644322 378999999999999999999754322  11 24589999999999986544   45555665

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.91  E-value=6.4e-24  Score=189.26  Aligned_cols=135  Identities=27%  Similarity=0.446  Sum_probs=116.2

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      +.+|+.+|+|++.+   .+|+...+++++||++||+|++++|||+|..|++.|++++++|+++|++|++||.|+.+.+++
T Consensus         2 ~~~Gd~aPdF~l~t---~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~   78 (215)
T PRK13599          2 KLLGEKFPSMEVVT---TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK   78 (215)
T ss_pred             CCCCCCCCCCEeEC---CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            46899999999984   489988889999999877777799999999999999999999999999999999999999998


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC-ceeeEEEEEeCCceEEEEEec
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~-~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |.+.+++..+. +++||+++|+++++++.||+.....+ ...|++||||++|+|++++..
T Consensus        79 w~~~i~~~~~~-~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~  137 (215)
T PRK13599         79 WVEWIKDNTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYY  137 (215)
T ss_pred             HHHhHHHhcCC-CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEc
Confidence            88765432111 68999999999999999998654333 268999999999999998764

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.91  E-value=7.5e-24  Score=188.95  Aligned_cols=137  Identities=27%  Similarity=0.429  Sum_probs=116.1

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+.+|+|++.+.   +|+....++++||++||+|++++|||+|+.|++.|++++++|+++|++|++||+|+...++
T Consensus         6 ~~~iG~~aPdF~l~~~---~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~   82 (215)
T PRK13191          6 IPLIGEKFPEMEVITT---HGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHI   82 (215)
T ss_pred             cccCCCcCCCCEeecC---CCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            4568999999999844   7864433558999999888889999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC-CceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~-~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|.+..++..+. +++||+++|++++++++||++.... +...|++||||++|+|++++..+
T Consensus        83 aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~  143 (215)
T PRK13191         83 EWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP  143 (215)
T ss_pred             HHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC
Confidence            988766443222 6899999999999999999975432 45789999999999999987643

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.91  E-value=8e-24  Score=180.13  Aligned_cols=129  Identities=21%  Similarity=0.319  Sum_probs=115.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      ..+|+.+|+|+++++   +|+.+++++++||++||+||++.|||.|+.+++.|++++++++++|+++|+||.|+++.+++
T Consensus         4 ~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~   80 (154)
T PRK09437          4 LKAGDIAPKFSLPDQ---DGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSR   80 (154)
T ss_pred             CCCCCcCCCcEeeCC---CCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            357999999999854   99999999999999999999888999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C----ceeeEEEEEeCCceEEEEEec
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~----~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |+++.       +++|+++.|+++.++++||+...+.  +    ...|++||||++|+|++.|..
T Consensus        81 ~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g  138 (154)
T PRK09437         81 FAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK  138 (154)
T ss_pred             HHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC
Confidence            99876       7899999999999999999865432  1    123788999999999999874

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.91  E-value=7.6e-24  Score=177.17  Aligned_cols=126  Identities=31%  Similarity=0.363  Sum_probs=113.0

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcC
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  324 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~  324 (384)
                      +++|+|+++   |.+|+.+++++++||++||+||+++|||.|+.+++.|++++++++++++++++|++|+++.+++|.++
T Consensus         1 ~~~p~f~l~---~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~   77 (140)
T cd03017           1 DKAPDFTLP---DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK   77 (140)
T ss_pred             CCCCCcccc---CCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            468999998   45999999999999999999998899999999999999999999999999999999999999999988


Q ss_pred             ccccCCCCCcceeEEecCchHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEecC
Q psy17178        325 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       325 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +       +++|+++.|+++.+++.||+...+   .+...|++||||++|+|++.+...
T Consensus        78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~  129 (140)
T cd03017          78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKV  129 (140)
T ss_pred             h-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecC
Confidence            6       789999999999999999996542   123458999999999999988643

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.91  E-value=3.7e-24  Score=180.46  Aligned_cols=136  Identities=21%  Similarity=0.271  Sum_probs=112.1

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      ++|+++|+|++++. +.+|++++|++++||++||+||++.|||+|+.++|.+++++++++++++++++|+.++.....+|
T Consensus         1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (146)
T PF08534_consen    1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF   79 (146)
T ss_dssp             STTSB--CCEEEEE-ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred             CCCCCCCCeEEEee-cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence            58999999999762 33999999999999999999995549999999999999999999999999999998876557888


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      .+.   +    +++||++.|.+++++++||+...... ..| ...|.+++||++|+|++...|...
T Consensus        80 ~~~---~----~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~-~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   80 LKK---Y----GINFPVLSDPDGALAKALGVTIMEDP-GNG-FGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             HHH---T----TTTSEEEEETTSHHHHHTTCEEECCT-TTT-SSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHh---h----CCCceEEechHHHHHHHhCCcccccc-ccC-CeecEEEEEECCCEEEEEEeCCCC
Confidence            774   3    78999999999999999998533211 011 356788999999999988888764

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.91  E-value=5.8e-24  Score=177.87  Aligned_cols=130  Identities=28%  Similarity=0.362  Sum_probs=114.3

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  134 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~  134 (384)
                      +++|+|++++.   +|+.+++++++||++||+||+++|||+|..+++.|++++++++++|+++++|+.|+++.+++|.+.
T Consensus         1 ~~~p~f~l~~~---~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~   77 (140)
T cd03017           1 DKAPDFTLPDQ---DGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK   77 (140)
T ss_pred             CCCCCccccCC---CCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            47899999877   899999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             ccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        135 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       135 ~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .       +++||+++|+++.++++||+.....+  ......|.+||||++|+|+....|..
T Consensus        78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~--~~~~~~p~~~lid~~G~v~~~~~g~~  130 (140)
T cd03017          78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKK--KYMGIERSTFLIDPDGKIVKVWRKVK  130 (140)
T ss_pred             h-------CCCceEEECCccHHHHHhCCcccccc--ccCCcceeEEEECCCCEEEEEEecCC
Confidence            3       78999999999999999999765321  11233478999999999998887766

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.90  E-value=5.3e-23  Score=182.68  Aligned_cols=132  Identities=26%  Similarity=0.404  Sum_probs=113.7

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  321 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~  321 (384)
                      +|+.+|+|++.+.   +| .+++++++| |++||+|++++|||+|..|++.|++++++|+++|++|++||.|+.+.+++|
T Consensus         1 vG~~aP~F~~~~~---~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~   76 (203)
T cd03016           1 LGDTAPNFEADTT---HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW   76 (203)
T ss_pred             CcCCCCCeEEecC---CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence            5889999999854   66 589999999 788777777999999999999999999999999999999999999999999


Q ss_pred             hcCccccCCCCCcceeEEecCchHHHHHhCceecC--CCceeeEEEEEeCCceEEEEEec
Q psy17178        322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD--QGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~--~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+.+++..+ .+++||+++|+++.++++||+....  .+...|++||||++|+|++.+..
T Consensus        77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~  135 (203)
T cd03016          77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYY  135 (203)
T ss_pred             HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEec
Confidence            887654333 2789999999999999999997543  23467899999999999998765

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.90  E-value=9e-23  Score=170.58  Aligned_cols=127  Identities=39%  Similarity=0.548  Sum_probs=113.7

Q ss_pred             CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCc
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  325 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~  325 (384)
                      .+|+|++.++   +|+++++++++||++||+||+++||+.|..+++.|+++++++++.++.+++|+.|+++.+++|.+++
T Consensus         1 ~~p~f~l~~~---~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971           1 KAPDFTLPAT---DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCCceeccC---CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            3799999855   9999999999999999999999999999999999999999998889999999999999999998875


Q ss_pred             cccCCCCCcceeEEecCchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEecCC
Q psy17178        326 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      .      +.+|+++.|+++.+++.||+...+.   +...|++||||++|+|++.+....
T Consensus        78 ~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~  130 (140)
T cd02971          78 G------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPL  130 (140)
T ss_pred             c------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence            2      5789999999999999999976543   356789999999999999887654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK13189 peroxiredoxin; Provisional

Probab=99.90  E-value=8.3e-23  Score=183.28  Aligned_cols=134  Identities=30%  Similarity=0.520  Sum_probs=114.8

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +.+|+.+|+|+++++   +|+ ++++++ +||++||+|++++|||+|+.|++.|++++++|+++|++|++||+|+...+.
T Consensus         9 ~~vG~~aPdF~~~~~---~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~   84 (222)
T PRK13189          9 PLIGDKFPEFEVKTT---HGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHI   84 (222)
T ss_pred             ccCCCcCCCcEeEcC---CCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence            468999999999955   674 788775 999888888889999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC-CceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~-~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.+.+++..+. +++||+++|.++.++++||+..... +...|++||||++|+|++++..
T Consensus        85 aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~  144 (222)
T PRK13189         85 KWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYY  144 (222)
T ss_pred             HHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEec
Confidence            998876543322 5899999999999999999965432 2478999999999999998764

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.90  E-value=1.3e-22  Score=172.25  Aligned_cols=132  Identities=23%  Similarity=0.321  Sum_probs=115.6

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccc-cCCCeEEEEEEeCCCCcCchHh-HHHHHHHHHHHHhCCc-EEEEEeCCCHHhHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSHFTHL  319 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d-~~Gk~vvl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~v-~vv~Is~d~~~~~~  319 (384)
                      +|+.+|+|++++..+.+|+.++|++ ++||++||+|+|+.|||.|..| ++.+++.+++|++.|+ .|++||.|+++.++
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~   80 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK   80 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence            5899999999854112389999999 5999999999999999999999 9999999999999999 69999999999999


Q ss_pred             HHhcCccccCCCCCc--ceeEEecCchHHHHHhCceecCC--Cc---eeeEEEEEeCCceEEEEEecCCC
Q psy17178        320 AWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQ--GH---TLDKYCLECYKMVIVYWFERGNC  382 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~~~~--~~---~~p~~~lId~~G~i~~~~~~~~~  382 (384)
                      +|.++.       ++  +|++++|++++++++||+.....  +.   ..+.+|||| +|+|++++....+
T Consensus        81 ~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~  142 (155)
T cd03013          81 AWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP  142 (155)
T ss_pred             HHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence            999986       55  89999999999999999976543  22   578999999 7999999886543

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.89  E-value=8.1e-23  Score=170.85  Aligned_cols=131  Identities=40%  Similarity=0.619  Sum_probs=115.5

Q ss_pred             CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCc
Q psy17178         56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  135 (384)
Q Consensus        56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~  135 (384)
                      .+|+|++.+.   +|+++++++++||+++|+||+++|||+|..+++.|+++++++++.++++++|+.|+++.+++|.+..
T Consensus         1 ~~p~f~l~~~---~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971           1 KAPDFTLPAT---DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCCceeccC---CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            4799999887   8999999999999999999999999999999999999999998889999999999999999998853


Q ss_pred             cccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        136 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       136 ~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                            ++.+||+++|+++.++++||+...+..  .+....|++||||++|+|++...|..+
T Consensus        78 ------~~~~~~~l~D~~~~~~~~~g~~~~~~~--~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971          78 ------GGLNFPLLSDPDGEFAKAYGVLIEKSA--GGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             ------cCCCceEEECCChHHHHHcCCcccccc--ccCceeEEEEEECCCCcEEEEEecCCC
Confidence                  156899999999999999999765521  223457899999999999988888775

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG0852|consensus

Probab=99.89  E-value=8.1e-23  Score=168.17  Aligned_cols=136  Identities=61%  Similarity=1.043  Sum_probs=126.6

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      ++.+..++|+|....++|+.-+.++|++|+||+|++.|||..+.-+|++|+-.+.+.+++|++.|.+|+++|+|+.+.+.
T Consensus         3 ~~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl   82 (196)
T KOG0852|consen    3 MEVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL   82 (196)
T ss_pred             ccccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence            44577888999999989998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      +|+...++..+.+++++|+++|.+.++++.|||+.+++|     ..-|..||||++|.+|.
T Consensus        83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G-----~~lRglfIId~~gi~R~  138 (196)
T KOG0852|consen   83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEG-----IALRGLFIIDPDGILRQ  138 (196)
T ss_pred             hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCC-----cceeeeEEEccccceEE
Confidence            999999999888889999999999999999999998876     44567789999999974

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.88  E-value=8.1e-23  Score=172.59  Aligned_cols=129  Identities=19%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             CCCccEEEeeecCccceEEccccC-CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178         56 PAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  134 (384)
Q Consensus        56 ~aP~f~l~~~~~~~g~~~~l~~~~-gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~  134 (384)
                      .+|+|++++.   +|+++++++++ +|++||+||+++|||+|+.+++.|+++++++++.|+++++|+.|+.+...+|.+.
T Consensus         1 ~~p~f~l~~~---~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~   77 (149)
T cd02970           1 TAPDFELPDA---GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG   77 (149)
T ss_pred             CCCCccccCC---CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence            4799999887   89999999986 5788899988999999999999999999999999999999999998888778774


Q ss_pred             ccccCCCCccceeEEeeCcchhHHhhcCcccCC------------------CCcccceeEEEEEEEecCCCcccccce
Q psy17178        135 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ------------------GPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       135 ~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~------------------g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      .       +++||+++|++++++++||+.....                  +........+++||||++|+|+..+.|
T Consensus        78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970          78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence            3       7899999999999999999964331                  111122356899999999999977654

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.88  E-value=3.5e-22  Score=168.68  Aligned_cols=124  Identities=20%  Similarity=0.165  Sum_probs=108.4

Q ss_pred             CCCCceeeeEEcCcceeeeccccC-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcC
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  324 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~  324 (384)
                      .+|+|+++++   +|+.++++++. +|++||+||+++|||+|+.+++.|+++++++++.|+++++|+.|+.+...+|.+.
T Consensus         1 ~~p~f~l~~~---~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~   77 (149)
T cd02970           1 TAPDFELPDA---GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG   77 (149)
T ss_pred             CCCCccccCC---CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence            3799999854   99999999985 5778888887999999999999999999999999999999999998888888876


Q ss_pred             ccccCCCCCcceeEEecCchHHHHHhCceecC-----------------------CCceeeEEEEEeCCceEEEEEec
Q psy17178        325 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD-----------------------QGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       325 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~-----------------------~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .       +++||+++|+++.+.++||+....                       .+...|++||||++|+|++.|..
T Consensus        78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970          78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence            5       789999999999999999996322                       12468999999999999998763

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.88  E-value=6.3e-22  Score=173.39  Aligned_cols=120  Identities=18%  Similarity=0.209  Sum_probs=102.3

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~  318 (384)
                      ..+|+.+|+|+++++ +.+|+.++++++ +||+++|+|| ++||++|+.++|.|+++++    ++++|++|+.| +++..
T Consensus        39 ~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~~  112 (185)
T PRK15412         39 ALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQKA  112 (185)
T ss_pred             hhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHHH
Confidence            357999999999966 333678888776 8999999999 9999999999999988753    58999999975 56778


Q ss_pred             HHHhcCccccCCCCCcceeE-EecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|++++       +.+|++ +.|+++.+.+.||+      ...|++|+||++|+|++++..
T Consensus       113 ~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv------~~~P~t~vid~~G~i~~~~~G  161 (185)
T PRK15412        113 ISWLKEL-------GNPYALSLFDGDGMLGLDLGV------YGAPETFLIDGNGIIRYRHAG  161 (185)
T ss_pred             HHHHHHc-------CCCCceEEEcCCccHHHhcCC------CcCCeEEEECCCceEEEEEec
Confidence            8898876       788884 78999999999999      678999999999999997763

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.88  E-value=2.4e-22  Score=177.46  Aligned_cols=135  Identities=13%  Similarity=0.100  Sum_probs=103.8

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--------C
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------D  123 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--------d  123 (384)
                      ..|..+|+|++++.   +|+.++|++++||++||+|| ++|||+|+.|+|.|++++++|+++|++||+|+.        |
T Consensus        14 ~~~~~~pdf~l~d~---~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d   89 (199)
T PTZ00056         14 ELRKSIYDYTVKTL---EGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP   89 (199)
T ss_pred             hcCCCCCceEEECC---CCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence            36789999999887   99999999999999999999 999999999999999999999999999999996        4


Q ss_pred             CHHhHHhhccCccccCCCCccceeEEeeC------cchhHHhhc----CcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        124 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL------THKISLDYG----VYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~------~~~~~~~yg----v~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      +.+.+++|++.   +    +++||+++|.      ...+.+.++    ..+...|...++...+.+||||++|+|+.+..
T Consensus        90 ~~e~~~~f~~~---~----~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~  162 (199)
T PTZ00056         90 NTKDIRKFNDK---N----KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS  162 (199)
T ss_pred             CHHHHHHHHHH---c----CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence            56778888874   3    8899999863      223332221    11111122122222246899999999998777


Q ss_pred             eeee
Q psy17178        194 GALY  197 (384)
Q Consensus       194 g~~~  197 (384)
                      |...
T Consensus       163 g~~~  166 (199)
T PTZ00056        163 PRTE  166 (199)
T ss_pred             CCCC
Confidence            7553

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.88  E-value=3.3e-22  Score=164.29  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=97.9

Q ss_pred             cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC------CCHHhHHHHhcCccccCCCC
Q psy17178        259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------DSHFTHLAWVNTPRKEGGLG  332 (384)
Q Consensus       259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~------d~~~~~~~~~~~~~~~~~~~  332 (384)
                      .|+++++++++||++||+|| ++|||+|..++|.|++++++++++++.+++|+.      ++++.+++|++++       
T Consensus        12 ~~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~-------   83 (126)
T cd03012          12 TDKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY-------   83 (126)
T ss_pred             CCCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc-------
Confidence            45789999999999999999 999999999999999999999999999999986      4577888888876       


Q ss_pred             CcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        333 KLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       333 ~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++||++.|+++.+.+.|++      ...|++||||++|+|++++..
T Consensus        84 ~~~~p~~~D~~~~~~~~~~v------~~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012          84 GITYPVANDNDYATWRAYGN------QYWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCCCCEEECCchHHHHHhCC------CcCCeEEEECCCCcEEEEEec
Confidence            89999999999999999998      688999999999999998764

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.87  E-value=2.9e-22  Score=170.06  Aligned_cols=121  Identities=13%  Similarity=0.045  Sum_probs=97.7

Q ss_pred             CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------CHHhH
Q psy17178        247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH  318 (384)
Q Consensus       247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------~~~~~  318 (384)
                      +|+|+++   |.+|+++++++++||++||+|| ++||| |..|+|.|++++++|+++|+.|++|+.|        +++.+
T Consensus         2 ~~~f~l~---d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~   76 (152)
T cd00340           2 IYDFSVK---DIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI   76 (152)
T ss_pred             cceeEEE---CCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence            6899998   5599999999999999999999 99999 9999999999999999899999999864        46778


Q ss_pred             HHHhcC-ccccCCCCCcceeEEecC--chH-HHHHhCceec--C-----CCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNT-PRKEGGLGKLKIPLLSDL--THK-ISLDYGVYLS--D-----QGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~-~~~~~~~~~~~~~~~~D~--~~~-~~~~~gv~~~--~-----~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|+++ .       +++||++.|.  ++. ..+.|++...  +     .-.+.+++||||++|+|++++..
T Consensus        77 ~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G  141 (152)
T cd00340          77 KEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP  141 (152)
T ss_pred             HHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence            889875 4       7899999864  333 4556663211  1     00224589999999999998764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.87  E-value=2.1e-22  Score=170.99  Aligned_cols=131  Identities=11%  Similarity=0.082  Sum_probs=102.1

Q ss_pred             CCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHHhH
Q psy17178         57 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH  128 (384)
Q Consensus        57 aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~~~  128 (384)
                      +|+|++++.   +|++++|++++||++||+|| ++||| |+.|+|.|++++++|+++|+++++|+.|        +.+.+
T Consensus         2 ~~~f~l~d~---~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~   76 (152)
T cd00340           2 IYDFSVKDI---DGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI   76 (152)
T ss_pred             cceeEEECC---CCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence            689999877   99999999999999999999 99999 9999999999999999899999999874        35678


Q ss_pred             HhhccCccccCCCCccceeEEeeC--cch-hHHhhcCcccCC-CC-cccceeEEEEEEEecCCCcccccceeeee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDL--THK-ISLDYGVYLSDQ-GP-VRGSLLSTAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~--~~~-~~~~ygv~~~~~-g~-~~g~~~~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                      ++|++.  ++    +++||+++|.  ++. .++.|+++.... +. .......+++||||++|+|+....|.+.+
T Consensus        77 ~~f~~~--~~----~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~  145 (152)
T cd00340          77 KEFCET--NY----GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDP  145 (152)
T ss_pred             HHHHHH--hc----CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCH
Confidence            888863  12    7899999874  343 566777532210 00 01112235789999999999988887643

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PLN02412 probable glutathione peroxidase

Probab=99.86  E-value=6.4e-22  Score=170.33  Aligned_cols=133  Identities=13%  Similarity=0.110  Sum_probs=105.6

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHH
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF  126 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~  126 (384)
                      +.+|+|++++.   +|+.++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|+.|        +.+
T Consensus         7 ~~~pdf~l~d~---~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~   82 (167)
T PLN02412          7 KSIYDFTVKDI---GGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE   82 (167)
T ss_pred             CCCCceEEECC---CCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence            67999999887   99999999999999999999 9999999999999999999999999999999975        333


Q ss_pred             h-HHhhccCccccCCCCccceeEEee--Ccc-hhHHhhcCcccCCCC--cccceeEEEEEEEecCCCcccccceeeee
Q psy17178        127 T-HLAWVNTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQGP--VRGSLLSTAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       127 ~-~~~~~~~~~~~~~~~~~~~p~l~D--~~~-~~~~~ygv~~~~~g~--~~g~~~~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                      . .+.|.+.   +    +++||+++|  .++ ..++.|+++....+.  ..++...|++||||++|+|+....|...+
T Consensus        83 ~~~~~~~~~---~----~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~  153 (167)
T PLN02412         83 EIQQTVCTR---F----KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSP  153 (167)
T ss_pred             HHHHHHHHc---c----CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCH
Confidence            3 3444453   3    789999974  554 788888865433221  12233357899999999999888877743

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.86  E-value=9e-21  Score=164.38  Aligned_cols=126  Identities=24%  Similarity=0.294  Sum_probs=112.9

Q ss_pred             cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-H
Q psy17178        237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-H  315 (384)
Q Consensus       237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~  315 (384)
                      ....+.+|+.+|+|++.++   +|+.+++++++||+++|+|| ++||+.|+.+++.|+++++++++.++++++|+.|+ .
T Consensus        31 ~~~~~~~g~~~p~~~~~~~---~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~  106 (173)
T PRK03147         31 DKEKVQVGKEAPNFVLTDL---EGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE  106 (173)
T ss_pred             cccccCCCCCCCCcEeecC---CCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence            3345678999999999854   99999999999999999999 99999999999999999999998889999999974 4


Q ss_pred             HhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        316 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +..++|.+++       +.+|+++.|.++.+.+.||+      ...|++|+||++|+|+..+..
T Consensus       107 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~g~i~~~~~g  157 (173)
T PRK03147        107 LAVKNFVNRY-------GLTFPVAIDKGRQVIDAYGV------GPLPTTFLIDKDGKVVKVITG  157 (173)
T ss_pred             HHHHHHHHHh-------CCCceEEECCcchHHHHcCC------CCcCeEEEECCCCcEEEEEeC
Confidence            6778888776       78999999999999999999      678999999999999987754

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.86  E-value=2e-21  Score=174.45  Aligned_cols=127  Identities=15%  Similarity=0.119  Sum_probs=102.5

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  313 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------  313 (384)
                      ..|+.+|+|+++   |.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|+.|        
T Consensus        74 ~~g~~aPdF~l~---d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~  149 (236)
T PLN02399         74 ATEKSVHDFTVK---DIDGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  149 (236)
T ss_pred             hcCCCCCceEEE---CCCCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Confidence            478999999998   5599999999999999999999 9999999999999999999999999999999963        


Q ss_pred             CHHhHHHHh-cCccccCCCCCcceeEEec--Cch-HHHHHhCceecCC----C---ceeeEEEEEeCCceEEEEEec
Q psy17178        314 SHFTHLAWV-NTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQ----G---HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       314 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~D--~~~-~~~~~~gv~~~~~----~---~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+++++|+ +++       +++||++.|  .++ .+...|++.....    +   ...|++||||++|+|+++|..
T Consensus       150 s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G  219 (236)
T PLN02399        150 SNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP  219 (236)
T ss_pred             CHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC
Confidence            456777776 444       789999854  444 4555554310000    0   246899999999999998864

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.86  E-value=8.4e-22  Score=176.81  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC------
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  123 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d------  123 (384)
                      ....|+.+|+|++++.   +|+.++|++++||++||+|| ++|||+|..++|+|++++++|+++|++||+|+.|      
T Consensus        72 ~~~~g~~aPdF~l~d~---~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e  147 (236)
T PLN02399         72 RAATEKSVHDFTVKDI---DGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  147 (236)
T ss_pred             chhcCCCCCceEEECC---CCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence            4458999999999887   99999999999999999999 9999999999999999999999999999999964      


Q ss_pred             --CHHhHHhhc-cCccccCCCCccceeEEee--Ccc-hhHHhhcCcccCCCCccc--ceeEEEEEEEecCCCccccccee
Q psy17178        124 --SHFTHLAWV-NTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQGPVRG--SLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       124 --~~~~~~~~~-~~~~~~~~~~~~~~p~l~D--~~~-~~~~~ygv~~~~~g~~~g--~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                        +.+.+++|+ ++   +    +++||++.|  .++ .++..|++.....|...|  +...+.+||||++|+|+..+.|.
T Consensus       148 ~~s~~ei~~f~~~~---~----g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~  220 (236)
T PLN02399        148 PGSNPEIKQFACTR---F----KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT  220 (236)
T ss_pred             CCCHHHHHHHHHHh---c----CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC
Confidence              445677776 33   2    789999864  444 566777753221111101  12246799999999999988887


Q ss_pred             eee
Q psy17178        196 LYS  198 (384)
Q Consensus       196 ~~p  198 (384)
                      +.+
T Consensus       221 ~~~  223 (236)
T PLN02399        221 TSP  223 (236)
T ss_pred             CCH
Confidence            744

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.86  E-value=4.3e-21  Score=169.55  Aligned_cols=126  Identities=12%  Similarity=-0.010  Sum_probs=100.3

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------C
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------D  313 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d  313 (384)
                      ..+..+|+|+++   |.+|+.+++++++||++||+|| ++|||+|..|+|.|++++++|+++|++||+|+.        |
T Consensus        14 ~~~~~~pdf~l~---d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d   89 (199)
T PTZ00056         14 ELRKSIYDYTVK---TLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP   89 (199)
T ss_pred             hcCCCCCceEEE---CCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence            357889999998   4599999999999999999999 999999999999999999999999999999986        5


Q ss_pred             CHHhHHHHhcCccccCCCCCcceeEEecC------chHHHHH--------hCceecCCCc-eeeEEEEEeCCceEEEEEe
Q psy17178        314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL------THKISLD--------YGVYLSDQGH-TLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~------~~~~~~~--------~gv~~~~~~~-~~p~~~lId~~G~i~~~~~  378 (384)
                      +++.+++|++++       +++||++.|.      ...+.+.        |+......+. ..+++||||++|+|++++.
T Consensus        90 ~~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~  162 (199)
T PTZ00056         90 NTKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS  162 (199)
T ss_pred             CHHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence            677889998876       8999998752      2333322        2221111111 2247999999999998665

>PLN02412 probable glutathione peroxidase

Probab=99.85  E-value=3.5e-21  Score=165.79  Aligned_cols=123  Identities=14%  Similarity=0.100  Sum_probs=99.3

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------CHH
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF  316 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------~~~  316 (384)
                      +.+|+|+++   |.+|+.+++++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++||.|        +.+
T Consensus         7 ~~~pdf~l~---d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~   82 (167)
T PLN02412          7 KSIYDFTVK---DIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE   82 (167)
T ss_pred             CCCCceEEE---CCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence            679999998   5599999999999999999999 9999999999999999999999999999999974        344


Q ss_pred             hHHH-HhcCccccCCCCCcceeEEec--Cc-hHHHHHhCceecCC------C-ceeeEEEEEeCCceEEEEEe
Q psy17178        317 THLA-WVNTPRKEGGLGKLKIPLLSD--LT-HKISLDYGVYLSDQ------G-HTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       317 ~~~~-~~~~~~~~~~~~~~~~~~~~D--~~-~~~~~~~gv~~~~~------~-~~~p~~~lId~~G~i~~~~~  378 (384)
                      .+.+ |.+++       +++||++.|  .+ ....+.|++.....      + ...|++||||++|+|++++.
T Consensus        83 ~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~  148 (167)
T PLN02412         83 EIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA  148 (167)
T ss_pred             HHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence            4444 45655       899999873  44 36666676432110      0 23689999999999999886

>KOG0852|consensus

Probab=99.85  E-value=1.2e-20  Score=155.42  Aligned_cols=138  Identities=61%  Similarity=0.986  Sum_probs=130.7

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  321 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~  321 (384)
                      .+..++|+|+.+.+.|+.-+.++|+||+||+|++.||+..++-+|+.|+-.+...+++|++.|.+|+++|+|+...+.+|
T Consensus         5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW   84 (196)
T KOG0852|consen    5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAW   84 (196)
T ss_pred             ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhH
Confidence            45567799999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +..-++++|.++.++|+++|.++++++.||++..+.|...+..||||++|.+|.+-.+
T Consensus        85 ~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~N  142 (196)
T KOG0852|consen   85 INTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITIN  142 (196)
T ss_pred             hcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeec
Confidence            9999999999999999999999999999999999999999999999999999986543

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.85  E-value=2.5e-21  Score=169.21  Aligned_cols=135  Identities=13%  Similarity=0.106  Sum_probs=102.3

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEE-EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-------
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLV-FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-------  124 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vv-l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-------  124 (384)
                      .++.+|+|++++.   +|++++|++++||++| +.+| ++|||+|+.|+|.|++++++|+++|+++++||.|+       
T Consensus        16 ~~~~~p~f~l~d~---~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~   91 (183)
T PTZ00256         16 PTKSFFEFEAIDI---DGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW   91 (183)
T ss_pred             CCCcccceEeEcC---CCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence            4678999999887   9999999999999765 4557 99999999999999999999999999999999752       


Q ss_pred             -HHhHHhhccCccccCCCCccceeEEee--Ccchh-HHhhcCcccCC-------CCcccceeEEEEEEEecCCCcccccc
Q psy17178        125 -HFTHLAWVNTPRKEGGLGKLKIPLLSD--LTHKI-SLDYGVYLSDQ-------GPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~p~l~D--~~~~~-~~~ygv~~~~~-------g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                       .+...+|.+.  ++    +++||+++|  .++.. ++.|+.+....       +...+++.++++||||++|+|+..+.
T Consensus        92 ~~~~~~~f~~~--~~----~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~  165 (183)
T PTZ00256         92 DEPEIKEYVQK--KF----NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS  165 (183)
T ss_pred             CHHHHHHHHHH--hc----CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence             3455566431  22    789999966  45543 45564433221       11234555668899999999998887


Q ss_pred             eeee
Q psy17178        194 GALY  197 (384)
Q Consensus       194 g~~~  197 (384)
                      |...
T Consensus       166 g~~~  169 (183)
T PTZ00256        166 PKVN  169 (183)
T ss_pred             CCCC
Confidence            7653

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.85  E-value=6.6e-21  Score=165.03  Aligned_cols=118  Identities=23%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             CCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC--------
Q psy17178        244 SKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------  314 (384)
Q Consensus       244 g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~--------  314 (384)
                      |+.+|+|++.   +.+|+.++++++ +||++||+|| ++|||.|..+++.|++++++++++++.+++|+.|+        
T Consensus         1 g~~~p~f~l~---~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~   76 (171)
T cd02969           1 GSPAPDFSLP---DTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS   76 (171)
T ss_pred             CCcCCCcccc---CCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence            5789999998   449999999998 8999999999 99999999999999999999998899999999865        


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++..++|++++       +++|+++.|+++.+++.||+      ...|.+||||++|+|++...
T Consensus        77 ~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v------~~~P~~~lid~~G~v~~~~~  127 (171)
T cd02969          77 PENMKAKAKEH-------GYPFPYLLDETQEVAKAYGA------ACTPDFFLFDPDGKLVYRGR  127 (171)
T ss_pred             HHHHHHHHHHC-------CCCceEEECCchHHHHHcCC------CcCCcEEEECCCCeEEEeec
Confidence            56777777765       78899999999999999999      57789999999999998753

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.85  E-value=1.8e-21  Score=159.88  Aligned_cols=107  Identities=16%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC------CCHHhHHhhccCccccCCCCc
Q psy17178         70 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------DSHFTHLAWVNTPRKEGGLGK  143 (384)
Q Consensus        70 g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~------d~~~~~~~~~~~~~~~~~~~~  143 (384)
                      |++++|++++||++||+|| ++|||+|+.++|.|++++++++++++++++|+.      ++++.+++|++.   +    +
T Consensus        13 ~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~---~----~   84 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLR---Y----G   84 (126)
T ss_pred             CCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHH---c----C
Confidence            5789999999999999999 999999999999999999999989999999986      346677777774   3    8


Q ss_pred             cceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        144 LKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       144 ~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++||++.|+++++++.||+           ..+|++||||++|+|+....|.
T Consensus        85 ~~~p~~~D~~~~~~~~~~v-----------~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          85 ITYPVANDNDYATWRAYGN-----------QYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCCEEECCchHHHHHhCC-----------CcCCeEEEECCCCcEEEEEecC
Confidence            8999999999999999998           2346889999999999887764

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.85  E-value=3.1e-21  Score=163.99  Aligned_cols=119  Identities=14%  Similarity=0.112  Sum_probs=95.6

Q ss_pred             CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHHhH
Q psy17178        247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTH  318 (384)
Q Consensus       247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~~~  318 (384)
                      +-+|+++   |.+|+++++++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+.        |+++.+
T Consensus         2 ~~~f~l~---~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~   77 (153)
T TIGR02540         2 FYSFEVK---DARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEI   77 (153)
T ss_pred             cccceeE---CCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHH
Confidence            3467887   5699999999999999999999 999999999999999999999999999999984        667888


Q ss_pred             HHHhcC-ccccCCCCCcceeEEecC-----chHHHHHhCceecCCCceeeE----EEEEeCCceEEEEEec
Q psy17178        319 LAWVNT-PRKEGGLGKLKIPLLSDL-----THKISLDYGVYLSDQGHTLDK----YCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~-~~~~~~~~~~~~~~~~D~-----~~~~~~~~gv~~~~~~~~~p~----~~lId~~G~i~~~~~~  379 (384)
                      ++|+++ +       +++||++.|.     +......|.+...   ...|+    +||||++|+|++.+..
T Consensus        78 ~~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p~~~~~tflID~~G~v~~~~~g  138 (153)
T TIGR02540        78 ESFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRP  138 (153)
T ss_pred             HHHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcC---CCCCCCccEEEEEcCCCcEEEEECC
Confidence            999874 5       7899999772     2222233433111   13455    9999999999998764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.85  E-value=1.4e-20  Score=163.19  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=99.2

Q ss_pred             CCCCCCCCCceeeeEEcCcce--eeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLK--EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHF  316 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~--~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~  316 (384)
                      +.+|..+|+|+++++   +|+  .++++++ +||+++|+|| ++|||+|+.++|.++++++    +++++++|+.+ +.+
T Consensus        34 ~~vG~~ap~f~l~~~---~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~  105 (173)
T TIGR00385        34 ALIGKPVPAFPLAAL---REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQ  105 (173)
T ss_pred             hhcCCCCCCcccccc---CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChH
Confidence            468999999999955   665  6776776 7999999999 9999999999999987764    57999999985 445


Q ss_pred             hHHHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ...+|++++       +++|+ ++.|+++.++++|++      ...|++|+||++|+|++.+..
T Consensus       106 ~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v------~~~P~~~~id~~G~i~~~~~G  156 (173)
T TIGR00385       106 NALKFLKEL-------GNPYQAILIDPNGKLGLDLGV------YGAPETFLVDGNGVILYRHAG  156 (173)
T ss_pred             HHHHHHHHc-------CCCCceEEECCCCchHHhcCC------eeCCeEEEEcCCceEEEEEec
Confidence            566787765       78887 568999999999999      578999999999999997763

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.85  E-value=2.3e-21  Score=164.75  Aligned_cols=128  Identities=10%  Similarity=0.053  Sum_probs=98.9

Q ss_pred             CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--------CCHHhHH
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTHL  129 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--------d~~~~~~  129 (384)
                      -+|++++.   +|++++|++++||++||+|| ++|||+|..++|.|++++++|+++|+++++|+.        |+.+.++
T Consensus         3 ~~f~l~~~---~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~   78 (153)
T TIGR02540         3 YSFEVKDA---RGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE   78 (153)
T ss_pred             ccceeECC---CCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence            46888776   99999999999999999999 999999999999999999999999999999994        5677888


Q ss_pred             hhccCccccCCCCccceeEEeeC---cchhHHhhcCcccCCCCccccee-EEEEEEEecCCCcccccceeeee
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGPVRGSLL-STAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~ygv~~~~~g~~~g~~~-~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                      +|++.  ++    +++||+++|.   +......|+......+   +.+. .+++||||++|+|+....|...+
T Consensus        79 ~f~~~--~~----~~~fp~~~d~~~~~~~~~~~~~~~~~~~~---~~p~~~~~tflID~~G~v~~~~~g~~~~  142 (153)
T TIGR02540        79 SFARR--NY----GVTFPMFSKIKILGSEAEPAFRFLVDSSK---KEPRWNFWKYLVNPEGQVVKFWRPEEPV  142 (153)
T ss_pred             HHHHH--hc----CCCCCccceEecCCCCCCcHHHHHHhcCC---CCCCCccEEEEEcCCCcEEEEECCCCCH
Confidence            88863  12    7899999873   2333333332211101   1111 34689999999999888887643

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.84  E-value=1.7e-20  Score=157.22  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=105.0

Q ss_pred             CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcC-chHhHHHHHHHHHHHHhCC---cEEEEEeCCC----HHh
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQIN---TEVVAASVDS----HFT  317 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~-C~~~~~~l~~l~~~~~~~~---v~vv~Is~d~----~~~  317 (384)
                      .+|+|++.   |.+|+++++++++||++||+|| ++||+. |..+++.|+++++++++.+   +++++||.|+    ++.
T Consensus         1 ~~p~f~l~---~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~   76 (142)
T cd02968           1 IGPDFTLT---DQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV   76 (142)
T ss_pred             CCCceEEE---cCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence            37999998   5599999999999999999999 899997 9999999999999998864   9999999854    577


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCCC--------ceeeEEEEEeCCceEEEEEe
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG--------HTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~~--------~~~p~~~lId~~G~i~~~~~  378 (384)
                      +++|++++       +.+|+++.|++   +.++++||+...+..        .+.|.+||||++|+|+++|+
T Consensus        77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~  141 (142)
T cd02968          77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG  141 (142)
T ss_pred             HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence            88888876       78999999875   789999998765321        24678999999999999876

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.84  E-value=5.4e-20  Score=161.58  Aligned_cols=115  Identities=16%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecc--ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~--d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      +.+|+.+|+|++++   .+|+.++++  +++||+++|+|| ++|||+|+.++|.+++++++   .++.+++||.|+++++
T Consensus        46 ~~vG~~aP~f~l~d---~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~  118 (189)
T TIGR02661        46 PDVGDAAPIFNLPD---FDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEH  118 (189)
T ss_pred             CCCCCcCCCcEecC---CCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence            46899999999994   499999994  579999999999 99999999999999998864   3688999999999999


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      ++|++++       +++++.+. .++++.+.||+      ...|++|+||++|+|++.
T Consensus       119 ~~~~~~~-------~~~~~~~~-~~~~i~~~y~v------~~~P~~~lID~~G~I~~~  162 (189)
T TIGR02661       119 RRFLKDH-------ELGGERYV-VSAEIGMAFQV------GKIPYGVLLDQDGKIRAK  162 (189)
T ss_pred             HHHHHhc-------CCCcceee-chhHHHHhccC------CccceEEEECCCCeEEEc
Confidence            9999876       66666543 46789999998      678999999999999985

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.84  E-value=9.7e-21  Score=158.68  Aligned_cols=127  Identities=21%  Similarity=0.218  Sum_probs=105.0

Q ss_pred             CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCC-chHHHHHHHHhHHHHHhCC---cEEEEEeCCC----HHh
Q psy17178         56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQIN---TEVVAASVDS----HFT  127 (384)
Q Consensus        56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~~~---v~vi~Vs~d~----~~~  127 (384)
                      .+|+|++++.   +|+++++++++||++||+|| ++||+. |..+++.|+++++++++++   +++++||.|+    ++.
T Consensus         1 ~~p~f~l~~~---~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~   76 (142)
T cd02968           1 IGPDFTLTDQ---DGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV   76 (142)
T ss_pred             CCCceEEEcC---CCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence            4799999877   99999999999999999999 899997 9999999999999998865   9999999865    466


Q ss_pred             HHhhccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCCC---cccceeEEEEEEEecCCCcccccc
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGP---VRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~---~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      +++|.+.+       +.+||++.|+.   +.++++||+...+...   ..+..+++.+||||++|+|+.+..
T Consensus        77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~  141 (142)
T cd02968          77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG  141 (142)
T ss_pred             HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence            77777743       67899999975   7899999997654211   123345688999999999987643

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.83  E-value=2.4e-20  Score=153.38  Aligned_cols=114  Identities=18%  Similarity=0.192  Sum_probs=99.3

Q ss_pred             CCCCceeeeEEcCcc--eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-CCHHhHHHHh
Q psy17178        246 PAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWV  322 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g--~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-d~~~~~~~~~  322 (384)
                      .+|+|+++++   +|  +.+++++++||++||+|| ++|||+|..++|.|+++.+++   +++|++|+. |+.+..++|+
T Consensus         2 ~~p~f~~~~~---~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~   74 (127)
T cd03010           2 PAPAFSLPAL---PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWL   74 (127)
T ss_pred             CCCCcccccc---cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHH
Confidence            5899999865   66  889999999999999999 999999999999999998765   599999997 5677888888


Q ss_pred             cCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        323 NTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++.       ++.|+ ++.|.++.+++.|++      ..+|++|+||++|+|++.+..
T Consensus        75 ~~~-------~~~~~~~~~D~~~~~~~~~~v------~~~P~~~~ld~~G~v~~~~~G  119 (127)
T cd03010          75 ARH-------GNPYAAVGFDPDGRVGIDLGV------YGVPETFLIDGDGIIRYKHVG  119 (127)
T ss_pred             Hhc-------CCCCceEEECCcchHHHhcCC------CCCCeEEEECCCceEEEEEec
Confidence            775       66665 668999999999999      678999999999999997763

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.83  E-value=1.8e-20  Score=156.05  Aligned_cols=102  Identities=11%  Similarity=0.104  Sum_probs=85.2

Q ss_pred             eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-------CcEEEEEeCCC-HHhHHHHhcCccccCCCC
Q psy17178        261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS-HFTHLAWVNTPRKEGGLG  332 (384)
Q Consensus       261 ~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-------~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~  332 (384)
                      ..+++++++||+++|+|| |+|||+|+.++|.|+++|++++++       ++.+|+||.|. .+..++|+++.       
T Consensus        16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~-------   87 (146)
T cd03008          16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM-------   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence            357889999999999999 999999999999999999988753       69999999985 44567787765       


Q ss_pred             Cccee---EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        333 KLKIP---LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       333 ~~~~~---~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      +++|+   +..+.++.+++.||+      ..+|++||||++|+|+..
T Consensus        88 ~~~~~~~p~~~~~~~~l~~~y~v------~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008          88 PKKWLFLPFEDEFRRELEAQFSV------EELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             CCCceeecccchHHHHHHHHcCC------CCCCEEEEECCCCcEEee
Confidence            55553   333334689999999      689999999999999974

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.83  E-value=5.7e-21  Score=167.33  Aligned_cols=124  Identities=18%  Similarity=0.217  Sum_probs=102.7

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-CHHh
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFT  127 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-~~~~  127 (384)
                      ...+|+++|+|+++++ +++|+.++++++ +||++||+|| ++|||+|+.++|.|+++++    +|+++++|+.| +.+.
T Consensus        38 ~~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~  111 (185)
T PRK15412         38 SALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQK  111 (185)
T ss_pred             hhhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHH
Confidence            3568999999999887 333677888776 7999999999 9999999999999987753    58999999975 4677


Q ss_pred             HHhhccCccccCCCCccceeE-EeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~-l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      +++|.++.       +++||+ +.|.++.++++||+           ...|.+|+||++|+|+....|.+.
T Consensus       112 ~~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv-----------~~~P~t~vid~~G~i~~~~~G~~~  164 (185)
T PRK15412        112 AISWLKEL-------GNPYALSLFDGDGMLGLDLGV-----------YGAPETFLIDGNGIIRYRHAGDLN  164 (185)
T ss_pred             HHHHHHHc-------CCCCceEEEcCCccHHHhcCC-----------CcCCeEEEECCCceEEEEEecCCC
Confidence            88888753       778984 78999999999998           234678999999999988888763

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.83  E-value=6.3e-20  Score=147.82  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             CCceeeeEEcCcceeeeccccC-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCcc
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR  326 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~  326 (384)
                      |+|+++   |.+|+.+++++++ ||++||+|| ++||++|+.++|.+++++++++ .++.+++++.++.+..++|++++ 
T Consensus         1 p~f~l~---~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~-   74 (114)
T cd02967           1 PTFDLT---TIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKH-   74 (114)
T ss_pred             CCceee---cCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHh-
Confidence            788888   4599999999997 999999999 9999999999999999988875 46888988877788888898876 


Q ss_pred             ccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        327 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       327 ~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                            ++ .+|++.+  +.+.+.|++      ...|++|+||++|+|++.
T Consensus        75 ------~~~~~p~~~~--~~~~~~~~~------~~~P~~~vid~~G~v~~~  111 (114)
T cd02967          75 ------GLEAFPYVLS--AELGMAYQV------SKLPYAVLLDEAGVIAAK  111 (114)
T ss_pred             ------CCCCCcEEec--HHHHhhcCC------CCcCeEEEECCCCeEEec
Confidence                  56 4888774  568899998      578999999999999983

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.83  E-value=2.4e-20  Score=161.56  Aligned_cols=115  Identities=21%  Similarity=0.237  Sum_probs=101.1

Q ss_pred             CCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--------
Q psy17178         54 SKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------  124 (384)
Q Consensus        54 G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--------  124 (384)
                      |+++|+|++.+.   +|++++|+++ +||++||+|| ++|||.|..+++.|.+++++|+++++.+++|+.|+        
T Consensus         1 g~~~p~f~l~~~---~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~   76 (171)
T cd02969           1 GSPAPDFSLPDT---DGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS   76 (171)
T ss_pred             CCcCCCccccCC---CCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence            688999999877   8999999999 8899999999 99999999999999999999998899999999975        


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      ++..++|.+.   +    +++||++.|.++.+++.||+.           ..|.++|||++|+|+.
T Consensus        77 ~~~~~~~~~~---~----~~~~~~l~D~~~~~~~~~~v~-----------~~P~~~lid~~G~v~~  124 (171)
T cd02969          77 PENMKAKAKE---H----GYPFPYLLDETQEVAKAYGAA-----------CTPDFFLFDPDGKLVY  124 (171)
T ss_pred             HHHHHHHHHH---C----CCCceEEECCchHHHHHcCCC-----------cCCcEEEECCCCeEEE
Confidence            4555666653   3    788999999999999999993           2357899999999973

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.82  E-value=4.5e-20  Score=161.34  Aligned_cols=126  Identities=11%  Similarity=0.084  Sum_probs=94.5

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEE-EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLV-FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  313 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vv-l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------  313 (384)
                      .+..+|+|++++   .+|+.+++++++||++| +.+| ++|||+|..|+|.|++++++|+++|+.|++||.|        
T Consensus        16 ~~~~~p~f~l~d---~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~   91 (183)
T PTZ00256         16 PTKSFFEFEAID---IDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW   91 (183)
T ss_pred             CCCcccceEeEc---CCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence            457899999984   49999999999999654 4557 9999999999999999999999999999999964        


Q ss_pred             CHHhHHHHhc-CccccCCCCCcceeEEec--CchHH-HHHhCceecC--------CC-ceee---EEEEEeCCceEEEEE
Q psy17178        314 SHFTHLAWVN-TPRKEGGLGKLKIPLLSD--LTHKI-SLDYGVYLSD--------QG-HTLD---KYCLECYKMVIVYWF  377 (384)
Q Consensus       314 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~D--~~~~~-~~~~gv~~~~--------~~-~~~p---~~~lId~~G~i~~~~  377 (384)
                      +.+...+|.+ ++       +++||++.|  .++.. .+.|+.....        .+ ...|   ++||||++|+|++++
T Consensus        92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~  164 (183)
T PTZ00256         92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF  164 (183)
T ss_pred             CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence            2356666654 44       789999965  44332 2334211000        01 2445   579999999999987


Q ss_pred             ec
Q psy17178        378 ER  379 (384)
Q Consensus       378 ~~  379 (384)
                      ..
T Consensus       165 ~g  166 (183)
T PTZ00256        165 SP  166 (183)
T ss_pred             CC
Confidence            63

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.82  E-value=2.4e-20  Score=153.34  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=99.9

Q ss_pred             CCCCccEEEeeecCcc--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC-CCHHhHHhh
Q psy17178         55 KPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAW  131 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~-d~~~~~~~~  131 (384)
                      +++|+|++++.   +|  +.+++++++||++||+|| ++|||+|+.++|.++++.+++   ++++++|+. ++.+.+++|
T Consensus         1 ~~~p~f~~~~~---~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~   73 (127)
T cd03010           1 KPAPAFSLPAL---PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW   73 (127)
T ss_pred             CCCCCcccccc---cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence            46899999887   65  889999999999999999 999999999999999987764   599999997 457788888


Q ss_pred             ccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        132 VNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      .+..       +++|+ ++.|..+++++.||+.           ..|++|+||++|+|+....|.+.
T Consensus        74 ~~~~-------~~~~~~~~~D~~~~~~~~~~v~-----------~~P~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010          74 LARH-------GNPYAAVGFDPDGRVGIDLGVY-----------GVPETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             HHhc-------CCCCceEEECCcchHHHhcCCC-----------CCCeEEEECCCceEEEEEeccCC
Confidence            7643       66775 6689999999999992           24678999999999988888763

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.81  E-value=1.1e-19  Score=157.50  Aligned_cols=127  Identities=23%  Similarity=0.308  Sum_probs=111.4

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HH
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HF  126 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~  126 (384)
                      ...+.+|+.+|+|++.+.   +|+.+++++++||+++|+|| ++|||.|+.+++.|+++++++++.++++++|+.|. .+
T Consensus        32 ~~~~~~g~~~p~~~~~~~---~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~  107 (173)
T PRK03147         32 KEKVQVGKEAPNFVLTDL---EGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETEL  107 (173)
T ss_pred             ccccCCCCCCCCcEeecC---CCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHH
Confidence            456789999999999877   89999999999999999999 99999999999999999999998889999999976 56


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..++|.+.+       +++||++.|.++++.++||+.           ..|++|++|++|+|+....|..
T Consensus       108 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~g~i~~~~~g~~  159 (173)
T PRK03147        108 AVKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG-----------PLPTTFLIDKDGKVVKVITGEM  159 (173)
T ss_pred             HHHHHHHHh-------CCCceEEECCcchHHHHcCCC-----------CcCeEEEECCCCcEEEEEeCCC
Confidence            677777643       789999999999999999982           2467899999999987666654

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.81  E-value=1.2e-19  Score=159.39  Aligned_cols=116  Identities=12%  Similarity=0.126  Sum_probs=97.7

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEcc--ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~--~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      .++.+|+++|+|++++.   +|+.++++  +++||+++|+|| ++|||+|+.++|.+++++++   .++.+++|+.|+++
T Consensus        44 ~~~~vG~~aP~f~l~d~---~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~  116 (189)
T TIGR02661        44 HGPDVGDAAPIFNLPDF---DGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPA  116 (189)
T ss_pred             cCCCCCCcCCCcEecCC---CCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHH
Confidence            35689999999999887   99999995  579999999999 99999999999999998764   47889999988888


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      .+++|.++.       +++++.+. .++++++.||+.           ..|++|+||++|+|++
T Consensus       117 ~~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~-----------~~P~~~lID~~G~I~~  161 (189)
T TIGR02661       117 EHRRFLKDH-------ELGGERYV-VSAEIGMAFQVG-----------KIPYGVLLDQDGKIRA  161 (189)
T ss_pred             HHHHHHHhc-------CCCcceee-chhHHHHhccCC-----------ccceEEEECCCCeEEE
Confidence            999998853       66776554 468899999982           2467799999999985

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG0854|consensus

Probab=99.80  E-value=1.5e-19  Score=148.73  Aligned_cols=152  Identities=24%  Similarity=0.407  Sum_probs=128.9

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .+.+|+.+|+|+..+.    -.++.+.||.|. |+||+-.|+.++|+|.+|+.++.++..+|..+|+..|+.|+|+.+++
T Consensus         5 ~l~lgd~~PNfea~Tt----~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH   80 (224)
T KOG0854|consen    5 RLRLGDTVPNFEADTT----VGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESH   80 (224)
T ss_pred             cccccCcCCCcccccc----ccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHH
Confidence            4568999999997654    357999999885 99999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCC--ccceeEEeeCcchhHHhhcCcccCCCCcccc-eeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        129 LAWVNTPRKEGGLG--KLKIPLLSDLTHKISLDYGVYLSDQGPVRGS-LLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       129 ~~~~~~~~~~~~~~--~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~-~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      ++|.++++.+....  .++||++.|+..+++-.|+....++-...|. ...|++||||++-+|   ++..+||..+|||.
T Consensus        81 ~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKi---rLs~lYP~ttGRN~  157 (224)
T KOG0854|consen   81 KDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKI---RLSFLYPSTTGRNF  157 (224)
T ss_pred             HHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceE---EEEEEcccccCcCH
Confidence            99998874443222  3899999999999999999987664222222 556999999999988   68999999999996


Q ss_pred             eee
Q psy17178        206 IRH  208 (384)
Q Consensus       206 k~~  208 (384)
                      -..
T Consensus       158 dEi  160 (224)
T KOG0854|consen  158 DEI  160 (224)
T ss_pred             HHH
Confidence            543

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.80  E-value=9e-20  Score=158.11  Aligned_cols=121  Identities=18%  Similarity=0.225  Sum_probs=99.3

Q ss_pred             cccCCCCCCccEEEeeecCccc--eEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-H
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLK--EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-H  125 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~--~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~  125 (384)
                      ...+|+++|+|++++.   +|+  +++++++ +||+++|+|| ++|||+|+.++|.++++++    +|+++++|+.++ .
T Consensus        33 ~~~vG~~ap~f~l~~~---~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~  104 (173)
T TIGR00385        33 SALIGKPVPAFPLAAL---REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS  104 (173)
T ss_pred             chhcCCCCCCcccccc---CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence            3468999999999876   665  6666776 7899999999 9999999999999987654    579999999854 5


Q ss_pred             HhHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +...+|.+..       +++|| ++.|+.++++++|++           ...|++|+||++|+|+....|.+
T Consensus       105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v-----------~~~P~~~~id~~G~i~~~~~G~~  158 (173)
T TIGR00385       105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGV-----------YGAPETFLVDGNGVILYRHAGPL  158 (173)
T ss_pred             HHHHHHHHHc-------CCCCceEEECCCCchHHhcCC-----------eeCCeEEEEcCCceEEEEEeccC
Confidence            5566777643       77897 568999999999998           22467899999999998888865

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.80  E-value=3.4e-19  Score=143.56  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             CccEEEeeecCccceEEccccC-CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCcc
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR  136 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~-gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~  136 (384)
                      |+|++++.   +|+.++|++++ ||++||+|| ++|||+|+.++|.+++++++++ .++.+++|+.++.+..++|++.+ 
T Consensus         1 p~f~l~~~---~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~-   74 (114)
T cd02967           1 PTFDLTTI---DGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKH-   74 (114)
T ss_pred             CCceeecC---CCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHh-
Confidence            78999877   89999999997 999999999 9999999999999999988875 46888988877788888888854 


Q ss_pred             ccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        137 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       137 ~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                            ++ .+|++.+  ++++++||+           ...|++|+||++|+|++
T Consensus        75 ------~~~~~p~~~~--~~~~~~~~~-----------~~~P~~~vid~~G~v~~  110 (114)
T cd02967          75 ------GLEAFPYVLS--AELGMAYQV-----------SKLPYAVLLDEAGVIAA  110 (114)
T ss_pred             ------CCCCCcEEec--HHHHhhcCC-----------CCcCeEEEECCCCeEEe
Confidence                  56 4888874  468888998           23578899999999974

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>KOG0855|consensus

Probab=99.80  E-value=2.4e-19  Score=146.28  Aligned_cols=133  Identities=23%  Similarity=0.326  Sum_probs=117.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .+++|+.+|||+|++-   +|++++|.++.|+ +||++|||++-+|.|.++.+.|.+-|++++..+.+|+|+|.|+...+
T Consensus        62 ~v~~Gd~iPD~tL~de---dg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sq  138 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDE---DGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQ  138 (211)
T ss_pred             eeecCCcCCCcccccC---CCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHH
Confidence            6779999999999655   9999999999985 99999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|...   +    +++|.+|+|+.+++.+.+|+..++    .|....|+.||+|..|....+..-.+
T Consensus       139 KaF~sK---q----nlPYhLLSDpk~e~ik~lGa~k~p----~gg~~~Rsh~if~kg~~k~~ik~~~i  195 (211)
T KOG0855|consen  139 KAFASK---Q----NLPYHLLSDPKNEVIKDLGAPKDP----FGGLPGRSHYIFDKGGVKQLIKNNQI  195 (211)
T ss_pred             HHhhhh---c----cCCeeeecCcchhHHHHhCCCCCC----CCCcccceEEEEecCCeEEEEEeccc
Confidence            999874   3    899999999999999999997665    34566788999999987765544433

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.80  E-value=1.1e-18  Score=172.47  Aligned_cols=120  Identities=10%  Similarity=0.151  Sum_probs=102.5

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC------C
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------S  314 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d------~  314 (384)
                      ...++.+|+|++.   |.+|+.++++  +||++||+|| |+||++|+.++|.|++++++++.++++||+|+.+      +
T Consensus        32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~  105 (521)
T PRK14018         32 ATVPHTLSTLKTA---DNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK  105 (521)
T ss_pred             ccccCCCCCeEee---cCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence            3456789999998   5599999997  8999999999 9999999999999999999998788999999863      2


Q ss_pred             HHhHHHHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        315 HFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+..++|.+.+       ++ ++|++.|.++.+++.|++      ..+|+++|||++|+|+..+..
T Consensus       106 ~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV------~giPTt~IIDkdGkIV~~~~G  158 (521)
T PRK14018        106 DGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNI------SVYPSWAIIGKDGDVQRIVKG  158 (521)
T ss_pred             HHHHHHHHHhC-------CCcccceeccccHHHHHHcCC------CCcCeEEEEcCCCeEEEEEeC
Confidence            34455565543       33 689999999999999999      789999999999999997653

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.79  E-value=1.8e-19  Score=150.03  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=81.5

Q ss_pred             ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-------CcEEEEEeCCC-HHhHHhhccCccccCCCC
Q psy17178         71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS-HFTHLAWVNTPRKEGGLG  142 (384)
Q Consensus        71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-------~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~  142 (384)
                      +.++|++++||+++|+|| |+|||+|+.++|.|.+++++++++       ++++|+||.|. .+..++|.+.+       
T Consensus        16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~-------   87 (146)
T cd03008          16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM-------   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence            467999999999999999 999999999999999999988753       69999999986 44567777643       


Q ss_pred             ccce---eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        143 KLKI---PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       143 ~~~~---p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      +++|   |+..+..+.+++.||+           ...|++||||++|+|+.
T Consensus        88 ~~~~~~~p~~~~~~~~l~~~y~v-----------~~iPt~vlId~~G~Vv~  127 (146)
T cd03008          88 PKKWLFLPFEDEFRRELEAQFSV-----------EELPTVVVLKPDGDVLA  127 (146)
T ss_pred             CCCceeecccchHHHHHHHHcCC-----------CCCCEEEEECCCCcEEe
Confidence            5555   3333434689999998           23467889999999973

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.78  E-value=2e-18  Score=138.08  Aligned_cols=112  Identities=23%  Similarity=0.278  Sum_probs=102.2

Q ss_pred             ceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC--HHhHHHHhcCccc
Q psy17178        250 WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTPRK  327 (384)
Q Consensus       250 f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~--~~~~~~~~~~~~~  327 (384)
                      |.+.   +.+|+.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+  ++..+++.+++  
T Consensus         2 ~~~~---~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~--   75 (116)
T cd02966           2 FSLP---DLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY--   75 (116)
T ss_pred             cccc---CCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc--
Confidence            5555   4599999999999999999999 99999999999999999999987889999999997  88999999887  


Q ss_pred             cCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        328 EGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       328 ~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                           +.+++++.|....+.+.||+      ...|+++|+|++|+|++.+.
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~------~~~P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          76 -----GITFPVLLDPDGELAKAYGV------RGLPTTFLIDRDGRIRARHV  115 (116)
T ss_pred             -----CCCcceEEcCcchHHHhcCc------CccceEEEECCCCcEEEEec
Confidence                 78999999999999999999      68899999999999998764

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.77  E-value=2.6e-18  Score=147.98  Aligned_cols=125  Identities=14%  Similarity=0.057  Sum_probs=94.9

Q ss_pred             CCCCCCCCceeee----EE---cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEE------E
Q psy17178        242 FVSKPAPFWQGTA----VV---DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV------V  308 (384)
Q Consensus       242 ~~g~~~P~f~l~~----l~---d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~v------v  308 (384)
                      .+|+.+|.....+    +.   +-+.++++.++++||+.||+|| |+||++|+.|+|.|.++    +++|+.+      +
T Consensus        24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~   98 (184)
T TIGR01626        24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT   98 (184)
T ss_pred             hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence            5677787776542    00   1145678899999999999999 99999999999999999    4467888      9


Q ss_pred             EEeCCC-HHhHHHHhcCccccCCCCCccee---EEecCchHHHHHhCceecCCCceeeEE-EEEeCCceEEEEEecC
Q psy17178        309 AASVDS-HFTHLAWVNTPRKEGGLGKLKIP---LLSDLTHKISLDYGVYLSDQGHTLDKY-CLECYKMVIVYWFERG  380 (384)
Q Consensus       309 ~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~gv~~~~~~~~~p~~-~lId~~G~i~~~~~~~  380 (384)
                      +||.|+ ......|.+.+.+..   +..||   ++.|+++.+..+||+      ...|++ ||||++|+|++.+..+
T Consensus        99 ~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv------~~~P~T~fVIDk~GkVv~~~~G~  166 (184)
T TIGR01626        99 IINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQL------NSEDSAIIVLDKTGKVKFVKEGA  166 (184)
T ss_pred             EEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCC------CCCCceEEEECCCCcEEEEEeCC
Confidence            999985 333344443222211   45555   999999999999999      678777 8999999999977753

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.77  E-value=2.7e-18  Score=142.13  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=86.7

Q ss_pred             cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCC-HHhHHHHhcCccccCCCCC
Q psy17178        257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGK  333 (384)
Q Consensus       257 d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~  333 (384)
                      |++ +++++++++||+++|+|| ++||++|+.++|.|++++++++++  +++|++|+.|. ++..++|++++       +
T Consensus         5 ~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~   75 (132)
T cd02964           5 DGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P   75 (132)
T ss_pred             cCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C
Confidence            555 699999999999999999 999999999999999999999875  79999999985 45777888765       3


Q ss_pred             cceeEE--ec--CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178        334 LKIPLL--SD--LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF  377 (384)
Q Consensus       334 ~~~~~~--~D--~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~  377 (384)
                       .+..+  .|  ..+.+.+.|++      ..+|+++|||++|+|++..
T Consensus        76 -~~~~~~~~d~~~~~~~~~~~~v------~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          76 -PWLAVPFEDEELRELLEKQFKV------EGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             -CeEeeccCcHHHHHHHHHHcCC------CCCCEEEEECCCCCEEchh
Confidence             33332  23  23577888999      6899999999999999754

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.76  E-value=1.7e-18  Score=143.17  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=86.5

Q ss_pred             cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCCH-HhHHHHhcCccccCCCCC
Q psy17178        257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSH-FTHLAWVNTPRKEGGLGK  333 (384)
Q Consensus       257 d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~-~~~~~~~~~~~~~~~~~~  333 (384)
                      |.+|+.+++++++||++||+|| ++||++|+.++|.|+++++++++.  +++|++||.|.. +..+++.+...      .
T Consensus         5 ~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~------~   77 (131)
T cd03009           5 RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMP------W   77 (131)
T ss_pred             ccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCC------e
Confidence            6699999999999999999999 999999999999999999999865  799999999854 34445544321      1


Q ss_pred             cceeEE-ecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178        334 LKIPLL-SDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF  377 (384)
Q Consensus       334 ~~~~~~-~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~  377 (384)
                      ..+++. .|....+.++||+      ...|+++|||++|+|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~  116 (131)
T cd03009          78 LAVPFSDRERRSRLNRTFKI------EGIPTLIILDADGEVVTTD  116 (131)
T ss_pred             eEcccCCHHHHHHHHHHcCC------CCCCEEEEECCCCCEEccc
Confidence            122222 2444788999999      6789999999999999753

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.75  E-value=8.9e-18  Score=137.14  Aligned_cols=108  Identities=18%  Similarity=0.259  Sum_probs=96.1

Q ss_pred             CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--CHHhHHHHhcCc
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTHLAWVNTP  325 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--~~~~~~~~~~~~  325 (384)
                      |+|++++   .+|+.+++++++||+++|+|| ++||++|+.++|.|++++++     +.+++|+.|  +++.+++|.+++
T Consensus         1 p~f~l~~---~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~   71 (123)
T cd03011           1 PLFTATT---LDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK   71 (123)
T ss_pred             CCceeec---CCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence            7889884   499999999999999999999 99999999999999999875     567888876  467888888876


Q ss_pred             cccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        326 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                             +++|+++.|+++++.+.|++      .+.|+++|||++| |++++.
T Consensus        72 -------~~~~~~~~d~~~~~~~~~~i------~~~P~~~vid~~g-i~~~~~  110 (123)
T cd03011          72 -------GYGFPVINDPDGVISARWGV------SVTPAIVIVDPGG-IVFVTT  110 (123)
T ss_pred             -------CCCccEEECCCcHHHHhCCC------CcccEEEEEcCCC-eEEEEe
Confidence                   78999999999999999999      6899999999999 888665

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.74  E-value=7.6e-18  Score=166.50  Aligned_cols=123  Identities=10%  Similarity=0.164  Sum_probs=103.3

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC------
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------  124 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~------  124 (384)
                      ...++++|+|++.+.   +|+.++++  +||+|||+|| ++|||+|+.++|.|++++++++..+++||+|+.+.      
T Consensus        32 ~~~~~~lP~f~l~D~---dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~  105 (521)
T PRK14018         32 ATVPHTLSTLKTADN---RPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK  105 (521)
T ss_pred             ccccCCCCCeEeecC---CCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence            567789999999777   99999998  8999999999 99999999999999999999987889999998742      


Q ss_pred             HHhHHhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      .+..++|.+.+       ++ ++|++.|.++++++.|++           ...|+++|||++|+|+....|.+.
T Consensus       106 ~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV-----------~giPTt~IIDkdGkIV~~~~G~~~  161 (521)
T PRK14018        106 DGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNI-----------SVYPSWAIIGKDGDVQRIVKGSIS  161 (521)
T ss_pred             HHHHHHHHHhC-------CCcccceeccccHHHHHHcCC-----------CCcCeEEEEcCCCeEEEEEeCCCC
Confidence            23444555432       33 689999999999999998           234678899999999999999764

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.73  E-value=3.9e-17  Score=141.38  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCC----CHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVD----SHF  316 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d----~~~  316 (384)
                      .....|+|++.   |++|+++++++++||++||+|.++.|..+|+..+..|+++++++.++  .+++++||+|    +|+
T Consensus        28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~  104 (174)
T PF02630_consen   28 NPRIVPDFTLT---DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE  104 (174)
T ss_dssp             TSCSSST-EEE---ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH
T ss_pred             CCccCCCcEEE---cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH
Confidence            55678999998   78999999999999999999999999999999999999999999864  6999999986    467


Q ss_pred             hHHHHhcCccccCCCCCcceeEEec---CchHHHHHhCceecC------CC----ceeeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSD------QG----HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~~~~------~~----~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+++|.+.+       +.++..+..   .-.++++.|+++...      .+    .|...+||||++|+|+..|..
T Consensus       105 ~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~  173 (174)
T PF02630_consen  105 VLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL  173 (174)
T ss_dssp             HHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred             HHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence            888888877       444444432   226788899987532      11    467789999999999998863

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.73  E-value=9.4e-18  Score=136.99  Aligned_cols=113  Identities=19%  Similarity=0.301  Sum_probs=97.9

Q ss_pred             CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--HHhHHhhccCc
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTP  135 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--~~~~~~~~~~~  135 (384)
                      |+|++.+.   +|+.+++++++||+++|+|| ++|||+|+.++|.|++++++     +++++|+.|+  ++.+++|.+.+
T Consensus         1 p~f~l~~~---~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~   71 (123)
T cd03011           1 PLFTATTL---DGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK   71 (123)
T ss_pred             CCceeecC---CCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence            78999877   89999999999999999999 99999999999999999875     6678888764  67777887753


Q ss_pred             cccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178        136 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       136 ~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                             +++||++.|.++++.++|++           ...|+++++|++| |+....|...+
T Consensus        72 -------~~~~~~~~d~~~~~~~~~~i-----------~~~P~~~vid~~g-i~~~~~g~~~~  115 (123)
T cd03011          72 -------GYGFPVINDPDGVISARWGV-----------SVTPAIVIVDPGG-IVFVTTGVTSE  115 (123)
T ss_pred             -------CCCccEEECCCcHHHHhCCC-----------CcccEEEEEcCCC-eEEEEeccCCH
Confidence                   78999999999999999998           3457889999999 98888887744

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.73  E-value=3.8e-18  Score=147.01  Aligned_cols=130  Identities=16%  Similarity=0.108  Sum_probs=100.3

Q ss_pred             cccCCCCCCccEEEee----ecC---ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEE-----
Q psy17178         50 SKNLSKPAPFWQGTAV----VDG---QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV-----  117 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~----~~~---~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~v-----  117 (384)
                      .+.+|++.|..+..+-    .++   +.++++.++++||+.||+|| |+||++|+.|+|.|.++    +++|+.+     
T Consensus        22 ~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~   96 (184)
T TIGR01626        22 NLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT   96 (184)
T ss_pred             hhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence            5679999999976532    111   24578999999999999999 99999999999999998    4568888     


Q ss_pred             -EEEeCCC-HHhHHhhccCccccCCCCcccee---EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        118 -VAASVDS-HFTHLAWVNTPRKEGGLGKLKIP---LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       118 -i~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p---~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                       ++||.|+ ......|.+.+.+.   .+..||   ++.|.++.++.+||+.        +.+  +++||||++|+|+..+
T Consensus        97 t~~IN~dd~~~~~~~fVk~fie~---~~~~~P~~~vllD~~g~v~~~~gv~--------~~P--~T~fVIDk~GkVv~~~  163 (184)
T TIGR01626        97 TTIINADDAIVGTGMFVKSSAKK---GKKENPWSQVVLDDKGAVKNAWQLN--------SED--SAIIVLDKTGKVKFVK  163 (184)
T ss_pred             eEEEECccchhhHHHHHHHHHHH---hcccCCcceEEECCcchHHHhcCCC--------CCC--ceEEEECCCCcEEEEE
Confidence             9999986 44445554433222   155677   9999999999999983        222  3448999999999999


Q ss_pred             ceeee
Q psy17178        193 GGALY  197 (384)
Q Consensus       193 ~g~~~  197 (384)
                      .|.+.
T Consensus       164 ~G~l~  168 (184)
T TIGR01626       164 EGALS  168 (184)
T ss_pred             eCCCC
Confidence            99763

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.73  E-value=1.5e-17  Score=133.02  Aligned_cols=113  Identities=20%  Similarity=0.287  Sum_probs=98.6

Q ss_pred             ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--HHhHHhhccCcc
Q psy17178         59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTPR  136 (384)
Q Consensus        59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--~~~~~~~~~~~~  136 (384)
                      +|++.+.   +|+.+++++++||+++|.|| ++||+.|...++.|.++.+++++.++.+++|+.|+  .+..+++.+.. 
T Consensus         1 ~~~~~~~---~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~-   75 (116)
T cd02966           1 DFSLPDL---DGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY-   75 (116)
T ss_pred             CccccCC---CCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence            4666666   88999999999999999999 99999999999999999999987889999999998  78888888753 


Q ss_pred             ccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        137 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       137 ~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                            +.+++++.|....+++.||+.           ..|.++|+|++|+|+....
T Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~-----------~~P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          76 ------GITFPVLLDPDGELAKAYGVR-----------GLPTTFLIDRDGRIRARHV  115 (116)
T ss_pred             ------CCCcceEEcCcchHHHhcCcC-----------ccceEEEECCCCcEEEEec
Confidence                  689999999999999999982           3467899999999976544

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.72  E-value=1.7e-17  Score=179.00  Aligned_cols=122  Identities=11%  Similarity=0.094  Sum_probs=105.8

Q ss_pred             CCCCCCCCceeeeEEcCcceeeec-cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC---CC---
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DS---  314 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l-~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~---d~---  314 (384)
                      ..|..+|+|..+.. +.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.|++|+.   |.   
T Consensus       392 ~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~  469 (1057)
T PLN02919        392 KTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKD  469 (1057)
T ss_pred             ccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccccc
Confidence            36899999998753 358899998 6899999999999 999999999999999999999988999999974   33   


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .+..+++++++       +++||++.|.++.+.++|++      ...|+++|||++|+|++.+.
T Consensus       470 ~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V------~~iPt~ilid~~G~iv~~~~  520 (1057)
T PLN02919        470 LEAIRNAVLRY-------NISHPVVNDGDMYLWRELGV------SSWPTFAVVSPNGKLIAQLS  520 (1057)
T ss_pred             HHHHHHHHHHh-------CCCccEEECCchHHHHhcCC------CccceEEEECCCCeEEEEEe
Confidence            34455566554       89999999999999999999      78999999999999999764

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.71  E-value=5.1e-17  Score=139.16  Aligned_cols=108  Identities=10%  Similarity=0.094  Sum_probs=87.8

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  322 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~  322 (384)
                      .....|+|++.     +|+.+++++++    ||+|| ++|||+|+.++|.|+++++++   ++.|++||.|...      
T Consensus        51 ~~~~~~~f~l~-----dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------  111 (181)
T PRK13728         51 EKPAPRWFRLS-----NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------  111 (181)
T ss_pred             CCCCCCccCCC-----CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC------
Confidence            34567889886     99999999997    77899 999999999999999999987   6999999987431      


Q ss_pred             cCccccCCCCCcceeEEec-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCC
Q psy17178        323 NTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCD  383 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d  383 (384)
                                ...||++.| .++.+.+.||+..    ..+|++||||++|++++....|..|
T Consensus       112 ----------~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~~  159 (181)
T PRK13728        112 ----------DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGATD  159 (181)
T ss_pred             ----------CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCCC
Confidence                      368999985 5677888898410    3789999999999998644445554

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.71  E-value=7.2e-17  Score=139.92  Aligned_cols=123  Identities=12%  Similarity=0.055  Sum_probs=93.5

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHH
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF  316 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~  316 (384)
                      +.+++|++.++   +|+.++|++++||++||+|| |+||+.|. +++.|++++++|+++|+.|++|+.        ++.+
T Consensus         3 ~~~~~f~~~~~---~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~   77 (183)
T PRK10606          3 DSILTTVVTTI---DGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE   77 (183)
T ss_pred             CCccCcEeECC---CCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence            35789998855   99999999999999999999 99999885 899999999999999999999987        4667


Q ss_pred             hHHHHhc-CccccCCCCCcceeEEec--Cc----hHHHHHhCceec----CC--C------------------ceeeEEE
Q psy17178        317 THLAWVN-TPRKEGGLGKLKIPLLSD--LT----HKISLDYGVYLS----DQ--G------------------HTLDKYC  365 (384)
Q Consensus       317 ~~~~~~~-~~~~~~~~~~~~~~~~~D--~~----~~~~~~~gv~~~----~~--~------------------~~~p~~~  365 (384)
                      ++++|++ ++       +++||++.+  -+    +.+.+-+.-..+    +.  +                  .-.=+-|
T Consensus        78 ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KF  150 (183)
T PRK10606         78 EIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF  150 (183)
T ss_pred             HHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEE
Confidence            8888886 44       889999944  33    234433321000    00  0                  0011369


Q ss_pred             EEeCCceEEEEEec
Q psy17178        366 LECYKMVIVYWFER  379 (384)
Q Consensus       366 lId~~G~i~~~~~~  379 (384)
                      |||++|+++.+|..
T Consensus       151 Lv~~~G~vv~r~~~  164 (183)
T PRK10606        151 LVGRDGQVIQRFSP  164 (183)
T ss_pred             EECCCCcEEEEECC
Confidence            99999999998864

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.70  E-value=2e-17  Score=136.76  Aligned_cols=109  Identities=12%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCCH-HhHHhhccCccccCCCCc
Q psy17178         67 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSH-FTHLAWVNTPRKEGGLGK  143 (384)
Q Consensus        67 ~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~  143 (384)
                      +.+|+.++|++++||+++|+|| ++||++|+.++|.|++++++++++  ++++++|+.|.. +..+++.+.   . ....
T Consensus         5 ~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~---~-~~~~   79 (131)
T cd03009           5 RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSK---M-PWLA   79 (131)
T ss_pred             ccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHc---C-CeeE
Confidence            3489999999999999999999 899999999999999999999865  799999999863 333444432   2 0002


Q ss_pred             cceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        144 LKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       144 ~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      ++++. .|....++++||+        .+   .|+++|||++|+|+...
T Consensus        80 ~~~~~-~~~~~~~~~~~~v--------~~---~P~~~lid~~G~i~~~~  116 (131)
T cd03009          80 VPFSD-RERRSRLNRTFKI--------EG---IPTLIILDADGEVVTTD  116 (131)
T ss_pred             cccCC-HHHHHHHHHHcCC--------CC---CCEEEEECCCCCEEccc
Confidence            22322 3445789999998        22   36789999999997543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG0855|consensus

Probab=99.70  E-value=1.5e-16  Score=129.99  Aligned_cols=130  Identities=24%  Similarity=0.245  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..++|+.+|+|+|.   |++|.+++|.++.|+ +||++||++..+|.|..+...+..-|++++..+.+|+++|.|+...+
T Consensus        62 ~v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sq  138 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQ  138 (211)
T ss_pred             eeecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHH
Confidence            34689999999998   889999999999885 99999999999999999999999999999998999999999999999


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC-CceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~-~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|....       +++|.+++|+.+++.+.+|+...+. |...+.+||.|+.|....+++.
T Consensus       139 KaF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~  193 (211)
T KOG0855|consen  139 KAFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNN  193 (211)
T ss_pred             HHhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEec
Confidence            9998876       8999999999999999999976554 4578889999988877766653

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.69  E-value=7.4e-17  Score=133.51  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCC-HHhHHhhccCccccCCCCc
Q psy17178         67 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGK  143 (384)
Q Consensus        67 ~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~  143 (384)
                      |++ +++++++++||+++|+|| ++||++|+.++|.|+++++++++.  ++++++|+.|. .+..++|.+++       +
T Consensus         5 ~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~   75 (132)
T cd02964           5 DGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P   75 (132)
T ss_pred             cCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C
Confidence            444 699999999999999999 999999999999999999999875  79999999986 45677777743       3


Q ss_pred             cceeEE--ee--CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        144 LKIPLL--SD--LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       144 ~~~p~l--~D--~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                       +++.+  .|  ..+.+++.||+           ...|+++|||++|+|+..
T Consensus        76 -~~~~~~~~d~~~~~~~~~~~~v-----------~~iPt~~lid~~G~iv~~  115 (132)
T cd02964          76 -PWLAVPFEDEELRELLEKQFKV-----------EGIPTLVVLKPDGDVVTT  115 (132)
T ss_pred             -CeEeeccCcHHHHHHHHHHcCC-----------CCCCEEEEECCCCCEEch
Confidence             33333  33  23578888998           234678899999999743

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.69  E-value=3.5e-17  Score=176.58  Aligned_cols=129  Identities=14%  Similarity=0.102  Sum_probs=103.9

Q ss_pred             ccCCCCCCccEEEeeecCccceEEc-cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC---CCHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DSHF  126 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l-~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~---d~~~  126 (384)
                      ..+|+++|+|+.++. ..+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++++++|+.   |..+
T Consensus       391 ~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~  468 (1057)
T PLN02919        391 KKTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEK  468 (1057)
T ss_pred             cccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccc
Confidence            447999999997651 227889998 6899999999999 999999999999999999999988999999974   3322


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..+++.+.+.++    +++||++.|.++++++.|++           ...|+++|||++|+|+....|..
T Consensus       469 ~~~~~~~~~~~~----~i~~pvv~D~~~~~~~~~~V-----------~~iPt~ilid~~G~iv~~~~G~~  523 (1057)
T PLN02919        469 DLEAIRNAVLRY----NISHPVVNDGDMYLWRELGV-----------SSWPTFAVVSPNGKLIAQLSGEG  523 (1057)
T ss_pred             cHHHHHHHHHHh----CCCccEEECCchHHHHhcCC-----------CccceEEEECCCCeEEEEEeccc
Confidence            233333333344    88999999999999999998           33467899999999987766644

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.66  E-value=5.9e-16  Score=134.21  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--------CCHH
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF  126 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--------d~~~  126 (384)
                      +.+++|++.++   +|++++|++++||++||+|| |+||+.|. +++.|++++++|+++|++|++|+.        ++.+
T Consensus         3 ~~~~~f~~~~~---~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~   77 (183)
T PRK10606          3 DSILTTVVTTI---DGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE   77 (183)
T ss_pred             CCccCcEeECC---CCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence            35789999887   99999999999999999999 99999885 899999999999999999999987        3567


Q ss_pred             hHHhhccCccccCCCCccceeEEeeC
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDL  152 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~  152 (384)
                      .+++|++.  ++    +++||++++.
T Consensus        78 ei~~f~~~--~~----g~~Fpv~~k~   97 (183)
T PRK10606         78 EIKTYCRT--TW----GVTFPMFSKI   97 (183)
T ss_pred             HHHHHHHH--cc----CCCceeEEEE
Confidence            78888752  22    7899999543

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.66  E-value=7.3e-16  Score=119.88  Aligned_cols=90  Identities=14%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCC-HHhHHHHhcCccccCCCCCcceeEEec---Cch
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSD---LTH  344 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~D---~~~  344 (384)
                      ||+++|+|| ++||++|..++|.|.+++++++ +.++++|+||.|. .+..+++.+..       +.++..+..   ...
T Consensus         1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   72 (95)
T PF13905_consen    1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN-------NFPWYNVPFDDDNNS   72 (95)
T ss_dssp             TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC-------TTSSEEEETTTHHHH
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc-------CCCceEEeeCcchHH
Confidence            899999999 9999999999999999999998 6789999999985 35566666654       345555443   347


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCCceE
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .+.+.|++      ...|+++|+|++|+|
T Consensus        73 ~l~~~~~i------~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   73 ELLKKYGI------NGIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHHTT-------TSSSEEEEEETTSBE
T ss_pred             HHHHHCCC------CcCCEEEEECCCCCC
Confidence            88999999      789999999999997

...

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=7.4e-16  Score=124.63  Aligned_cols=127  Identities=28%  Similarity=0.468  Sum_probs=109.0

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      .+++|+++|+|++.+.   +.+.++|+++.||..+|+.+|+-.+|+|..+...|++...++  .++.|+.||.|-|++++
T Consensus        17 ~~~vGd~ap~ftl~~~---dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPFAq~   91 (158)
T COG2077          17 EPQVGDKAPDFTLVGK---DLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPFAQK   91 (158)
T ss_pred             CCccCCcCCceEEEcC---cccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChhHHh
Confidence            4679999999999555   889999999999999999999999999999999999988776  45899999999999999


Q ss_pred             hhccCccccCCCCcc-ceeEEeeCc-chhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        130 AWVNTPRKEGGLGKL-KIPLLSDLT-HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~-~~p~l~D~~-~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      +|....       ++ +...++|.- .++.++||+...+ |...| ...|++|++|.+|+|.+
T Consensus        92 RfC~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~e-gpL~g-LlARaV~V~De~g~V~y  145 (158)
T COG2077          92 RFCGAE-------GIENVITLSDFRDRAFGENYGVLINE-GPLAG-LLARAVFVLDENGKVTY  145 (158)
T ss_pred             hhhhhc-------CcccceEhhhhhhhhhhHhhCEEecc-ccccC-eeeeEEEEEcCCCcEEE
Confidence            999853       44 477888864 6799999998765 33334 55799999999999974

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.63  E-value=7.2e-16  Score=132.10  Aligned_cols=108  Identities=10%  Similarity=0.119  Sum_probs=86.9

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      .+..+.|+|++  .   +|+.+++++++    +|+|| ++|||+|++++|.|+++++++   |++|++||.|...     
T Consensus        50 ~~~~~~~~f~l--~---dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~-----  111 (181)
T PRK13728         50 TEKPAPRWFRL--S---NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-----  111 (181)
T ss_pred             cCCCCCCccCC--C---CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-----
Confidence            45667889997  3   88999999998    77899 999999999999999999987   6999999987421     


Q ss_pred             ccCccccCCCCccceeEEee-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc-cccceeee
Q psy17178        132 VNTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN-GYAGGALY  197 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~-~~~~g~~~  197 (384)
                                 ...||++.| ..+.+.+.||+..         ...|++|+||++|+++ ....|.+.
T Consensus       112 -----------~~~fPv~~dd~~~~~~~~~g~~~---------~~iPttfLId~~G~i~~~~~~G~~~  159 (181)
T PRK13728        112 -----------DTAFPEALPAPPDVMQTFFPNIP---------VATPTTFLVNVNTLEALPLLQGATD  159 (181)
T ss_pred             -----------CCCCceEecCchhHHHHHhCCCC---------CCCCeEEEEeCCCcEEEEEEECCCC
Confidence                       347999996 5677888888511         1347889999999995 46777663

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.61  E-value=2.2e-14  Score=127.20  Aligned_cols=124  Identities=20%  Similarity=0.212  Sum_probs=98.9

Q ss_pred             CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH---hCCcEEEEEeCCCH----HhHHHH
Q psy17178        249 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSH----FTHLAW  321 (384)
Q Consensus       249 ~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~---~~~v~vv~Is~d~~----~~~~~~  321 (384)
                      +|+++   |++|+++++.+++||+++|+|.+++|..+|+.++..|.+++++..   ..+++++.||+|+.    +.+++|
T Consensus        49 ~f~l~---d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y  125 (207)
T COG1999          49 DFELT---DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY  125 (207)
T ss_pred             ceeee---cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence            68887   889999999999999999999999999999999999999999987   35689999998754    555555


Q ss_pred             hc-CccccCCCCCcceeEEecCc---hHHHHHhCceec--CC----C---ceeeEEEEEeCCceEEEEEecCCC
Q psy17178        322 VN-TPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLS--DQ----G---HTLDKYCLECYKMVIVYWFERGNC  382 (384)
Q Consensus       322 ~~-~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~--~~----~---~~~p~~~lId~~G~i~~~~~~~~~  382 (384)
                      .+ ..       ...|..+....   .++.++|+++..  +.    +   .|....||||++|+++..+..++.
T Consensus       126 ~~~~~-------~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~  192 (207)
T COG1999         126 AELNF-------DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP  192 (207)
T ss_pred             hcccC-------CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC
Confidence            55 22       45555555433   688899999852  11    1   467778999999999998887653

>KOG0854|consensus

Probab=99.61  E-value=4.5e-15  Score=122.46  Aligned_cols=136  Identities=24%  Similarity=0.381  Sum_probs=118.4

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      .+|+.+|+|+..+.   . ..+++.||.| .|.|++-.++.++|+|..|+..+.++..+|..+||+.++.|+|+.++++.
T Consensus         7 ~lgd~~PNfea~Tt---~-g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~   82 (224)
T KOG0854|consen    7 RLGDTVPNFEADTT---V-GKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD   82 (224)
T ss_pred             cccCcCCCcccccc---c-cceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH
Confidence            57999999998643   3 4799999988 59999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCC--cceeEEecCchHHHHHhCceecCC------CceeeEEEEEeCCceEEEEEecCC
Q psy17178        321 WVNTPRKEGGLGK--LKIPLLSDLTHKISLDYGVYLSDQ------GHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       321 ~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~gv~~~~~------~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      |++.++.++...+  ++||++.|+..+++-.||+....+      |.+.++.|+||++-+|+-.+-+++
T Consensus        83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~  151 (224)
T KOG0854|consen   83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPS  151 (224)
T ss_pred             HHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccc
Confidence            9998865543333  899999999999999999976532      467899999999999998876643

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.4e-14  Score=117.21  Aligned_cols=130  Identities=24%  Similarity=0.323  Sum_probs=113.7

Q ss_pred             cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+..+++|+.+|+|++.   +.+.+.++++++.||..+|+.+|+-.+|+|..+...+++...++  .++.|+.||.|.|.
T Consensus        14 ~g~~~~vGd~ap~ftl~---~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPF   88 (158)
T COG2077          14 KGNEPQVGDKAPDFTLV---GKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPF   88 (158)
T ss_pred             cCCCCccCCcCCceEEE---cCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChh
Confidence            34557899999999998   55899999999999999999999999999999999999988877  45899999999999


Q ss_pred             hHHHHhcCccccCCCCCcc-eeEEecCc-hHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEe
Q psy17178        317 THLAWVNTPRKEGGLGKLK-IPLLSDLT-HKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~D~~-~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .+++|+...       ++. ...++|-. ..+.++||+...+.   |...++.|++|.+|+|+|...
T Consensus        89 Aq~RfC~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el  148 (158)
T COG2077          89 AQKRFCGAE-------GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL  148 (158)
T ss_pred             HHhhhhhhc-------CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence            999999876       444 77788855 67889999988776   678899999999999999654

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.57  E-value=6.9e-15  Score=127.32  Aligned_cols=131  Identities=18%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCC----HH
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS----HF  126 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~----~~  126 (384)
                      .....|+|+|.+.   +|+++++++++||++||+|....|..+|+..+..|.++.+++.+.  +++++.||+||    ++
T Consensus        28 ~~~~~~~f~L~d~---~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~  104 (174)
T PF02630_consen   28 NPRIVPDFTLTDQ---DGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE  104 (174)
T ss_dssp             TSCSSST-EEEET---TSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH
T ss_pred             CCccCCCcEEEcC---CCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH
Confidence            4566789999655   999999999999999999998887789999999999999999864  68999999987    67


Q ss_pred             hHHhhccCccccCCCCccceeEEe---eCcchhHHhhcCcccCC-----CCcccceeEEEEEEEecCCCcccccc
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ-----GPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~~~~~ygv~~~~~-----g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      .+++|++.+       +.+|..+.   +...++++.|++++...     +....+.++..+++|||+|+|+.+..
T Consensus       105 ~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~  172 (174)
T PF02630_consen  105 VLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN  172 (174)
T ss_dssp             HHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred             HHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence            778888765       33444443   33467899999876432     11233456788999999999987653

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.56  E-value=2.6e-14  Score=120.42  Aligned_cols=94  Identities=18%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178        259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  338 (384)
Q Consensus       259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  338 (384)
                      .|+.++++++    .||+|| ++|||+|+.|+|.|+++++++   ++.|++|+.|....                ..||.
T Consensus        43 ~G~~~~l~~~----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp~   98 (153)
T TIGR02738        43 QGRHANQDDY----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFPD   98 (153)
T ss_pred             cchhhhcCCC----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------ccccc
Confidence            4556666554    599999 999999999999999999887   58999999885320                13444


Q ss_pred             EecCchHHH-HHh---CceecCCCceeeEEEEEeCCceEEEEEecCCC
Q psy17178        339 LSDLTHKIS-LDY---GVYLSDQGHTLDKYCLECYKMVIVYWFERGNC  382 (384)
Q Consensus       339 ~~D~~~~~~-~~~---gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~  382 (384)
                      ..|.+.... +.|   ++      ...|++||||++|+++.....|..
T Consensus        99 ~~~~~~~~~~~~~~~~~v------~~iPTt~LID~~G~~i~~~~~G~~  140 (153)
T TIGR02738        99 PLPATPEVMQTFFPNPRP------VVTPATFLVNVNTRKAYPVLQGAV  140 (153)
T ss_pred             ccCCchHHHHHHhccCCC------CCCCeEEEEeCCCCEEEEEeeccc
Confidence            444333333 445   55      588999999999887554444543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.55  E-value=9.1e-15  Score=113.67  Aligned_cols=90  Identities=12%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC---cc
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL---TH  154 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~  154 (384)
                      ||+++|+|| ++||+.|..++|.|.+++++++ +.++++|+||.|. .+..+++.+.   .    +.+++.+...   ..
T Consensus         1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~   72 (95)
T PF13905_consen    1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK---N----NFPWYNVPFDDDNNS   72 (95)
T ss_dssp             TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT---C----TTSSEEEETTTHHHH
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh---c----CCCceEEeeCcchHH
Confidence            799999999 9999999999999999999998 6789999999986 3455555543   2    4456655433   46


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCc
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPV  188 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v  188 (384)
                      .+.+.|++           ...|+++|+|++|+|
T Consensus        73 ~l~~~~~i-----------~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   73 ELLKKYGI-----------NGIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHHTT------------TSSSEEEEEETTSBE
T ss_pred             HHHHHCCC-----------CcCCEEEEECCCCCC
Confidence            78888988           234678999999986

...

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.8e-12  Score=104.81  Aligned_cols=134  Identities=20%  Similarity=0.263  Sum_probs=104.9

Q ss_pred             cccCCCCCCccEEEeee---cCcc-ceEEcccc-CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHHHhCCc-EEEEEeC
Q psy17178         50 SKNLSKPAPFWQGTAVV---DGQL-KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASV  122 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~---~~~g-~~~~l~~~-~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~v-~vi~Vs~  122 (384)
                      +.++|++.|+.++.+-.   +.+| ..++-.++ +||.|+|+-.|++++|.|.. ++|.+.+++++|+++|| +++.||+
T Consensus         2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV   81 (165)
T COG0678           2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV   81 (165)
T ss_pred             ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence            45799999999987642   1122 45677777 89999999999999999997 89999999999999999 6889999


Q ss_pred             CCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                      ++...+.+|.+..    +. +-+..+++|.++++.++.|......+..-|.. +-.+-++-+||.|.
T Consensus        82 ND~FVm~AWak~~----g~-~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~R-S~RYsmvV~nGvV~  142 (165)
T COG0678          82 NDAFVMNAWAKSQ----GG-EGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVR-SWRYSMVVENGVVE  142 (165)
T ss_pred             CcHHHHHHHHHhc----CC-CccEEEecCCCchhhhhcCceeecccCCccee-eeeEEEEEeCCeEE
Confidence            9999999999864    11 11788999999999999999766532223333 33345666788875

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.39  E-value=5.7e-13  Score=112.31  Aligned_cols=96  Identities=19%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeE
Q psy17178         69 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  148 (384)
Q Consensus        69 ~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~  148 (384)
                      .|+.+++++++    +|+|| ++|||+|+.++|.|+++++++   ++.+++|+.|....     +           .||.
T Consensus        43 ~G~~~~l~~~~----lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~-----~-----------~fp~   98 (153)
T TIGR02738        43 QGRHANQDDYA----LVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL-----T-----------GFPD   98 (153)
T ss_pred             cchhhhcCCCE----EEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc-----c-----------cccc
Confidence            46777776654    99999 999999999999999999887   68999999886321     1           3555


Q ss_pred             EeeCcchhH-HhhcCcccCCCCcccceeEEEEEEEecCCCc-ccccceee
Q psy17178        149 LSDLTHKIS-LDYGVYLSDQGPVRGSLLSTAIFVYALTSPV-NGYAGGAL  196 (384)
Q Consensus       149 l~D~~~~~~-~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v-~~~~~g~~  196 (384)
                      ..|.+.... +.|+.+        ++...|++|+||++|++ +....|.+
T Consensus        99 ~~~~~~~~~~~~~~~~--------~v~~iPTt~LID~~G~~i~~~~~G~~  140 (153)
T TIGR02738        99 PLPATPEVMQTFFPNP--------RPVVTPATFLVNVNTRKAYPVLQGAV  140 (153)
T ss_pred             ccCCchHHHHHHhccC--------CCCCCCeEEEEeCCCCEEEEEeeccc
Confidence            554444443 344220        22345788999999885 44566655

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.37  E-value=1.7e-12  Score=115.19  Aligned_cols=132  Identities=19%  Similarity=0.163  Sum_probs=98.9

Q ss_pred             ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH---hCCcEEEEEeCCCHHhHHhhccCc
Q psy17178         59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSHFTHLAWVNTP  135 (384)
Q Consensus        59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~---~~~v~vi~Vs~d~~~~~~~~~~~~  135 (384)
                      +|++.   |++|+++++.+++||+++|+|...+|..+|+.++..|.++.+++.   ..+++++.||+||.....+..+.+
T Consensus        49 ~f~l~---d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y  125 (207)
T COG1999          49 DFELT---DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY  125 (207)
T ss_pred             ceeee---cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence            79985   459999999999999999999988877899999999999999997   457899999999844333333322


Q ss_pred             cc-cCCCCccceeEEee---CcchhHHhhcCcccC--C-CC-cccceeEEEEEEEecCCCcccccceee
Q psy17178        136 RK-EGGLGKLKIPLLSD---LTHKISLDYGVYLSD--Q-GP-VRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       136 ~~-~~~~~~~~~p~l~D---~~~~~~~~ygv~~~~--~-g~-~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+ +.   ...|..+..   ...+++++|+|+...  . +. .+.+.++..++++|++|++.....+..
T Consensus       126 ~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~  191 (207)
T COG1999         126 AELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGE  191 (207)
T ss_pred             hcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCC
Confidence            22 11   334555554   237899999998632  2 21 467788899999999999986554443

>KOG0541|consensus

Probab=99.34  E-value=3.8e-12  Score=103.50  Aligned_cols=138  Identities=17%  Similarity=0.232  Sum_probs=106.6

Q ss_pred             cccccCCCCCCccEEEeeecC----ccceEEcccc-CCCeEEEEEeeCCCCCCch-HHHHHHHHhHHHHHhCCc-EEEEE
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDG----QLKEIKLSDY-YGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINT-EVVAA  120 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~----~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~v-~vi~V  120 (384)
                      ..++.+|+..|+-+.....+.    .+.+++++++ +||.+||+-.|++++|.|. .++|.+.+..++++.+|+ +|+.|
T Consensus         6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv   85 (171)
T KOG0541|consen    6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV   85 (171)
T ss_pred             cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence            456789999999332211111    1238999998 8999999999999999966 679999999999999999 57799


Q ss_pred             eCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        121 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       121 s~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      |+|+++..++|.+.+.+     +-...+++|+.+++.+++|+..+..+ .-+.+.++..-++-.||+|...
T Consensus        86 SVnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d-~~~g~RS~R~a~vvengkV~~~  150 (171)
T KOG0541|consen   86 SVNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSD-KLLGVRSRRYALVVENGKVTVV  150 (171)
T ss_pred             ecCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeecc-ccCccccccEEEEEeCCeEEEE
Confidence            99999999999987622     23688999999999999999765421 2334556666677789988644

>KOG2792|consensus

Probab=99.33  E-value=2.4e-11  Score=107.07  Aligned_cols=121  Identities=19%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcE--EEEEeCC----CHHhHHH
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTE--VVAASVD----SHFTHLA  320 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~--vv~Is~d----~~~~~~~  320 (384)
                      -+|+|.   |.+|+.++-.|+.||+++|+|.++.|..+|+.|+..|.+..++..+ .++.  -|+|++|    +++.+++
T Consensus       120 GpF~L~---d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~e  196 (280)
T KOG2792|consen  120 GPFSLV---DHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAE  196 (280)
T ss_pred             CceEEE---ecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHH
Confidence            678987   6699999999999999999999999999999999999999999876 3433  4677765    5788888


Q ss_pred             HhcCccccCCCCCcceeEEec---CchHHHHHhCceecCC----C-----ceeeEEEEEeCCceEEEEEe
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSDQ----G-----HTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~~~~~----~-----~~~p~~~lId~~G~i~~~~~  378 (384)
                      |.+++       +....-+..   .-.++++.|.||....    +     .|.=.+|||||+|+++..|-
T Consensus       197 Y~~eF-------~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G  259 (280)
T KOG2792|consen  197 YVSEF-------HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG  259 (280)
T ss_pred             HHHhc-------ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence            88887       444443433   3378899999987651    1     35557899999999987543

>KOG2501|consensus

Probab=99.25  E-value=1.4e-11  Score=101.85  Aligned_cols=108  Identities=22%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             cCcceeeecc-ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCC-HHhHHHHhcCccccCCCC
Q psy17178        257 DGQLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLG  332 (384)
Q Consensus       257 d~~g~~~~l~-d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~  332 (384)
                      +.+|..+... +++||++.++|- |.|||+|+.-.|.|.++|++.++.  .+.||.||.|. .+++.+|...+...    
T Consensus        19 ~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~----   93 (157)
T KOG2501|consen   19 KQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD----   93 (157)
T ss_pred             ccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCC----
Confidence            5578877777 579998888887 999999999999999999999864  59999999984 56777777765222    


Q ss_pred             CcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        333 KLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       333 ~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      -+-.|+..+...++.+.|++      .+.|+..++.++|+++-
T Consensus        94 W~~iPf~d~~~~~l~~ky~v------~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen   94 WLAIPFGDDLIQKLSEKYEV------KGIPALVILKPDGTVVT  130 (157)
T ss_pred             eEEecCCCHHHHHHHHhccc------CcCceeEEecCCCCEeh
Confidence            23344444455899999999      78999999999998775

>KOG2792|consensus

Probab=99.24  E-value=2.8e-11  Score=106.63  Aligned_cols=133  Identities=15%  Similarity=0.184  Sum_probs=99.6

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-C--cEEEEEeCCC-
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N--TEVVAASVDS-  124 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~--v~vi~Vs~d~-  124 (384)
                      ..+++|-   .|+|.+.   +|+.++-.||+|||++|+|..+.|..+|+.|+..|.+..++.+++ |  +..++||+|+ 
T Consensus       114 gk~~iGG---pF~L~d~---~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe  187 (280)
T KOG2792|consen  114 GKPAIGG---PFSLVDH---DGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE  187 (280)
T ss_pred             CCCccCC---ceEEEec---CCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence            3444553   5998665   999999999999999999996766669999999999999998753 3  3468999987 


Q ss_pred             ---HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccC---C-CCcccceeEEEEEEEecCCCcccc
Q psy17178        125 ---HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---Q-GPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~---~-g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                         ++.++++.+++...    -+.+.--.+.-..+++.|.||++.   + +..+=+-++-..++|||+|....+
T Consensus       188 RD~~~~~~eY~~eF~pk----llGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~  257 (280)
T KOG2792|consen  188 RDSVEVVAEYVSEFHPK----LLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDY  257 (280)
T ss_pred             cCCHHHHHHHHHhcChh----hhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehh
Confidence               56667777665222    344444455557899999999865   1 223445567788999999999764

>TIGR02740 TraF-like TraF-like protein

Probab=99.21  E-value=3e-11  Score=111.62  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178        259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  338 (384)
Q Consensus       259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  338 (384)
                      ..+...+++++||++||+|| ++||++|..++|.|+++++++   ++.|++||+|....                ..||.
T Consensus       155 ~~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----------------~~fp~  214 (271)
T TIGR02740       155 KQKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----------------PGFPN  214 (271)
T ss_pred             HHHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------ccCCc
Confidence            34457889999999999999 999999999999999999887   58999999985321                12454


Q ss_pred             EecCchHHHHHhCceecCCCceeeEEEEEeCC-ceEEE
Q psy17178        339 LSDLTHKISLDYGVYLSDQGHTLDKYCLECYK-MVIVY  375 (384)
Q Consensus       339 ~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~  375 (384)
                      . +.+..+++.||+      ..+|++||+|++ |+|..
T Consensus       215 ~-~~d~~la~~~gV------~~vPtl~Lv~~~~~~v~~  245 (271)
T TIGR02740       215 A-RPDAGQAQQLKI------RTVPAVFLADPDPNQFTP  245 (271)
T ss_pred             c-cCCHHHHHHcCC------CcCCeEEEEECCCCEEEE
Confidence            4 345567899999      789999999995 55544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.21  E-value=9e-11  Score=92.60  Aligned_cols=79  Identities=8%  Similarity=-0.068  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +.+||++||+|| ++||++|+.++|.|+++++++  .++.++.|+.|.....                         ..+
T Consensus        12 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~-------------------------~~l   63 (103)
T cd02985          12 KAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST-------------------------MEL   63 (103)
T ss_pred             HcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH-------------------------HHH
Confidence            346999999999 999999999999999999988  5688999988753211                         245


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +++|++      ...|+++++ ++|+++..+...
T Consensus        64 ~~~~~V------~~~Pt~~~~-~~G~~v~~~~G~   90 (103)
T cd02985          64 CRREKI------IEVPHFLFY-KDGEKIHEEEGI   90 (103)
T ss_pred             HHHcCC------CcCCEEEEE-eCCeEEEEEeCC
Confidence            677888      678875444 899999877643

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.20  E-value=3.1e-11  Score=100.93  Aligned_cols=87  Identities=14%  Similarity=0.032  Sum_probs=68.6

Q ss_pred             cceeeeccc--cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        259 QLKEIKLSD--YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       259 ~g~~~~l~d--~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      ++....+++  .+||++||+|| ++||++|..++|.+.++++++++ .+.++.|++|...                    
T Consensus         7 ~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~--------------------   64 (142)
T cd02950           7 AASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK--------------------   64 (142)
T ss_pred             hhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc--------------------
Confidence            344444444  47899999999 99999999999999999999864 4788999887421                    


Q ss_pred             eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                            ...+.++|++      ..+|+++++|++|+++..+..
T Consensus        65 ------~~~~~~~~~V------~~iPt~v~~~~~G~~v~~~~G   95 (142)
T cd02950          65 ------WLPEIDRYRV------DGIPHFVFLDREGNEEGQSIG   95 (142)
T ss_pred             ------cHHHHHHcCC------CCCCEEEEECCCCCEEEEEeC
Confidence                  0134678898      689999999999999986653

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR02740 TraF-like TraF-like protein

Probab=99.07  E-value=1.5e-10  Score=107.11  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             CCCCccEEEeeec--CccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178         55 KPAPFWQGTAVVD--GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  132 (384)
Q Consensus        55 ~~aP~f~l~~~~~--~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~  132 (384)
                      .+.+.+.......  ...+...+++++|+++||+|| ++|||+|+.++|.|+++.+++   |+.|++||+|....     
T Consensus       139 ~P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~-----  209 (271)
T TIGR02740       139 RPVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL-----  209 (271)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-----
Confidence            3556665543311  123458899999999999999 899999999999999999886   68999999986321     


Q ss_pred             cCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcccccceee
Q psy17178        133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNGYAGGAL  196 (384)
Q Consensus       133 ~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~~~~g~~  196 (384)
                      .           .||.+ +.+..+++.|||           ...|++|++|++ |+|..+..|.+
T Consensus       210 ~-----------~fp~~-~~d~~la~~~gV-----------~~vPtl~Lv~~~~~~v~~v~~G~~  251 (271)
T TIGR02740       210 P-----------GFPNA-RPDAGQAQQLKI-----------RTVPAVFLADPDPNQFTPIGFGVM  251 (271)
T ss_pred             c-----------cCCcc-cCCHHHHHHcCC-----------CcCCeEEEEECCCCEEEEEEeCCC
Confidence            1           25554 445668899998           345788999994 66654444543

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.05  E-value=7.7e-10  Score=86.72  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      ++++||+++|+|| ++||++|+.++|.++++.++++  ++.++.|..++                           ....
T Consensus        14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~~   63 (100)
T cd02999          14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKPS   63 (100)
T ss_pred             HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCHH
Confidence            3579999999999 9999999999999999999885  46777764431                           1236


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.++|++      ..+|+++++++ | .+..+.
T Consensus        64 l~~~~~V------~~~PT~~lf~~-g-~~~~~~   88 (100)
T cd02999          64 LLSRYGV------VGFPTILLFNS-T-PRVRYN   88 (100)
T ss_pred             HHHhcCC------eecCEEEEEcC-C-ceeEec
Confidence            6788999      78999999974 4 444454

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.04  E-value=1.9e-10  Score=96.22  Aligned_cols=89  Identities=17%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             ccceEEcccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccce
Q psy17178         69 QLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  146 (384)
Q Consensus        69 ~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~  146 (384)
                      +++...+++.  +||++||+|| ++||++|+..+|.+.++++++.+ .+.++.|++|...    +               
T Consensus         7 ~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~----~---------------   65 (142)
T cd02950           7 AASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK----W---------------   65 (142)
T ss_pred             hhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----c---------------
Confidence            4444555544  6899999999 99999999999999999999864 4788888876421    0               


Q ss_pred             eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        147 PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       147 p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                             .++++.|+|           ...|+++++|++|+++....|..
T Consensus        66 -------~~~~~~~~V-----------~~iPt~v~~~~~G~~v~~~~G~~   97 (142)
T cd02950          66 -------LPEIDRYRV-----------DGIPHFVFLDREGNEEGQSIGLQ   97 (142)
T ss_pred             -------HHHHHHcCC-----------CCCCEEEEECCCCCEEEEEeCCC
Confidence                   134567887           23457789999999987766644

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.4e-09  Score=84.80  Aligned_cols=136  Identities=21%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             CCCCCCCCceeeeEE---cCcc-eeeecccc-CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHHHhCCc-EEEEEeCCC
Q psy17178        242 FVSKPAPFWQGTAVV---DGQL-KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVDS  314 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~---d~~g-~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~~~~~v-~vv~Is~d~  314 (384)
                      .+|+.+|..++.+-.   +..| ..++..++ +||.++|+--|+..+|.|.. ++|.+.+++++++++|| .|+.||+|+
T Consensus         4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND   83 (165)
T COG0678           4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVND   83 (165)
T ss_pred             ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCc
Confidence            578999998887421   1122 34666664 89999999999999999987 89999999999999998 688999999


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C--c-eeeEEEEEeCCceEEEEEecCCCC
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G--H-TLDKYCLECYKMVIVYWFERGNCD  383 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~--~-~~p~~~lId~~G~i~~~~~~~~~d  383 (384)
                      +..+.+|.+.....    + +..++.|.++++.+..|+.....  |  . ..+..-|+ +||+|.+.+.+.+.|
T Consensus        84 ~FVm~AWak~~g~~----~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p~~  151 (165)
T COG0678          84 AFVMNAWAKSQGGE----G-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPPGD  151 (165)
T ss_pred             HHHHHHHHHhcCCC----c-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCCCC
Confidence            99999999876221    2 78899999999999999865443  2  2 23334455 599999988876544

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.5e-09  Score=85.91  Aligned_cols=123  Identities=15%  Similarity=0.103  Sum_probs=89.2

Q ss_pred             CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHHh
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFT  317 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~~  317 (384)
                      .+-+|+.+++   +|++++|++|+||++||.=- |+-|..-+ +...|+.||++|+++|+.|+++--        ++.++
T Consensus         4 ~~yd~~~~~~---~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eE   78 (162)
T COG0386           4 SIYDFSVKDI---DGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEE   78 (162)
T ss_pred             ccccceeecc---CCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHH
Confidence            3567888855   99999999999998777766 88888665 888899999999999999999953        45678


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCc------hHHHHHhCceecC--CC--ce-eeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLT------HKISLDYGVYLSD--QG--HT-LDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~------~~~~~~~gv~~~~--~~--~~-~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|+..  ++    +.+||++.--+      +.+.+.+.-....  .+  .. .=+-||||++|+|+.+|..
T Consensus        79 I~~fC~~--~Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p  145 (162)
T COG0386          79 IAKFCQL--NY----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSP  145 (162)
T ss_pred             HHHHHHh--cc----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence            8888875  23    89999986422      3333333211100  00  11 1246999999999998863

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.98  E-value=1.3e-09  Score=89.16  Aligned_cols=88  Identities=11%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             CC-CeEEEEEEeCCCCcCchHhHHHHH---HHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178        269 YG-KYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  344 (384)
Q Consensus       269 ~G-k~vvl~F~~a~~c~~C~~~~~~l~---~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  344 (384)
                      .| |+++|+|| ++||++|....+.+.   ++.+.++ .++.++.|++|.......|               ........
T Consensus        12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~---------------~~~~~~~~   74 (125)
T cd02951          12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF---------------DGEALSEK   74 (125)
T ss_pred             cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc---------------CCCCccHH
Confidence            67 89999999 999999999999885   5555555 4688889988754322221               11112457


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCC-ceEEEEEec
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYK-MVIVYWFER  379 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~~~~~  379 (384)
                      .++++|++      ..+|+++++|++ |+++..+..
T Consensus        75 ~l~~~~~v------~~~Pt~~~~~~~gg~~~~~~~G  104 (125)
T cd02951          75 ELARKYRV------RFTPTVIFLDPEGGKEIARLPG  104 (125)
T ss_pred             HHHHHcCC------ccccEEEEEcCCCCceeEEecC
Confidence            88999999      689999999999 899986653

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.97  E-value=1.9e-09  Score=84.95  Aligned_cols=81  Identities=9%  Similarity=-0.024  Sum_probs=60.7

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  155 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  155 (384)
                      ++.+||++||+|| ++||++|+..+|.|.++.+++  .++.++.|+.|.....                         .+
T Consensus        11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~-------------------------~~   62 (103)
T cd02985          11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST-------------------------ME   62 (103)
T ss_pred             HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH-------------------------HH
Confidence            3456899999999 999999999999999999988  5688888887752211                         24


Q ss_pred             hHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        156 ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +++.|+|        .+++   + |++.++|++.....|..
T Consensus        63 l~~~~~V--------~~~P---t-~~~~~~G~~v~~~~G~~   91 (103)
T cd02985          63 LCRREKI--------IEVP---H-FLFYKDGEKIHEEEGIG   91 (103)
T ss_pred             HHHHcCC--------CcCC---E-EEEEeCCeEEEEEeCCC
Confidence            5666777        3333   3 55568999887777754

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.93  E-value=4.7e-09  Score=82.59  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .|++++|+|| ++||++|+...|.|+++++++++..+.++.++.|.+                             .+++
T Consensus        16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~-----------------------------~~~~   65 (102)
T cd02948          16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI-----------------------------DTLK   65 (102)
T ss_pred             cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH-----------------------------HHHH
Confidence            5889999999 999999999999999999988755567777776621                             2346


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecCCC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNC  382 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~  382 (384)
                      +|++      ...|+ +++-++|+++......+.
T Consensus        66 ~~~v------~~~Pt-~~~~~~g~~~~~~~G~~~   92 (102)
T cd02948          66 RYRG------KCEPT-FLFYKNGELVAVIRGANA   92 (102)
T ss_pred             HcCC------CcCcE-EEEEECCEEEEEEecCCh
Confidence            7888      67785 455569998886665443

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG2501|consensus

Probab=98.92  E-value=4e-09  Score=87.35  Aligned_cols=102  Identities=22%  Similarity=0.192  Sum_probs=76.5

Q ss_pred             ccceEEcc-ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCCC-HHhHHhhccCccccCCCCcc
Q psy17178         69 QLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGKL  144 (384)
Q Consensus        69 ~g~~~~l~-~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~  144 (384)
                      +|..+..+ +++||.+.++|- +.|||+|+.--|.|.++|++.++.  .++||.||.|. .+....+.+   ++    +.
T Consensus        21 ~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~---~~----~~   92 (157)
T KOG2501|consen   21 DGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML---EH----HG   92 (157)
T ss_pred             CCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH---hc----CC
Confidence            77777766 668987666666 999999999999999999999864  48999999987 445555554   33    45


Q ss_pred             ceeEEe---eCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        145 KIPLLS---DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       145 ~~p~l~---D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                      +|..+.   |...++.+.|+|           -..|+..++.++|.+.
T Consensus        93 ~W~~iPf~d~~~~~l~~ky~v-----------~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen   93 DWLAIPFGDDLIQKLSEKYEV-----------KGIPALVILKPDGTVV  129 (157)
T ss_pred             CeEEecCCCHHHHHHHHhccc-----------CcCceeEEecCCCCEe
Confidence            665553   334788888888           2345677999999764

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=5.7e-09  Score=85.31  Aligned_cols=129  Identities=14%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             CCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHHhH
Q psy17178         57 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH  128 (384)
Q Consensus        57 aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~~~  128 (384)
                      +-+|+..+.   +|++++|++|+||+++|.=. |+-|..-+ +...|+.+|++|+++|++|++.-.+        +.+..
T Consensus         5 ~yd~~~~~~---~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI   79 (162)
T COG0386           5 IYDFSVKDI---DGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI   79 (162)
T ss_pred             cccceeecc---CCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence            457888877   99999999999998777666 99999655 8999999999999999999999653        35677


Q ss_pred             HhhccCccccCCCCccceeEEee--Ccch-hHHhhcCcccCC-CC--cccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSD--LTHK-ISLDYGVYLSDQ-GP--VRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D--~~~~-~~~~ygv~~~~~-g~--~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|.+.  ++    +.+||++.-  ..|+ ..=.|.-..... |.  ...+.-.-.=|+||++|+|....+-..
T Consensus        80 ~~fC~~--~Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t  147 (162)
T COG0386          80 AKFCQL--NY----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKT  147 (162)
T ss_pred             HHHHHh--cc----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCC
Confidence            888874  34    889999863  2221 111222222111 11  011111235689999999986555444

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.90  E-value=1.2e-08  Score=81.66  Aligned_cols=75  Identities=9%  Similarity=0.260  Sum_probs=61.7

Q ss_pred             cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        268 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       268 ~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      .+||+++|+|| ++||++|....|.+.++.+++++.++.+..|+.|.                            +..+.
T Consensus        22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l~   72 (111)
T cd02963          22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRLA   72 (111)
T ss_pred             cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHHH
Confidence            46899999999 99999999999999999999987678887777662                            13457


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++||+      ..+|+++++. +|+++..+.
T Consensus        73 ~~~~V------~~~Pt~~i~~-~g~~~~~~~   96 (111)
T cd02963          73 RKLGA------HSVPAIVGII-NGQVTFYHD   96 (111)
T ss_pred             HHcCC------ccCCEEEEEE-CCEEEEEec
Confidence            78898      6899999885 888877443

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.87  E-value=1.3e-08  Score=78.84  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=59.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +|++++|+|| ++||++|....|.++++.+.+++ .+.++.|+.|.                            ...+.+
T Consensus        11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~   60 (96)
T cd02956          11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA----------------------------QPQIAQ   60 (96)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998854 36666666542                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|++++++ +|+++..+..
T Consensus        61 ~~~i------~~~Pt~~~~~-~g~~~~~~~g   84 (96)
T cd02956          61 QFGV------QALPTVYLFA-AGQPVDGFQG   84 (96)
T ss_pred             HcCC------CCCCEEEEEe-CCEEeeeecC
Confidence            8888      6899999997 9998876653

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.80  E-value=1.7e-08  Score=79.14  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      ++++||+++|.|| ++||++|+..+|.+.++.++++  ++.++.|..
T Consensus        14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~   57 (100)
T cd02999          14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEE   57 (100)
T ss_pred             HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEEC
Confidence            3579999999999 9999999999999999999885  466666643

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.79  E-value=1.1e-08  Score=83.57  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=65.3

Q ss_pred             CC-CeEEEEEeeCCCCCCchHHHHHHH---HhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         79 YG-KYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        79 ~g-k~vvl~f~~~~~cp~C~~~~~~l~---~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      .| |+++|+|| ++||++|+...+.+.   ++.+.++ .++.++.|+.|.......|..               ......
T Consensus        12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~---------------~~~~~~   74 (125)
T cd02951          12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDG---------------EALSEK   74 (125)
T ss_pred             cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCC---------------CCccHH
Confidence            57 89999999 999999999998875   4555554 468888998876433322211               112457


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcccccceee
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNGYAGGAL  196 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~~~~g~~  196 (384)
                      +++++|++           ...|+++++|++ |++.....|..
T Consensus        75 ~l~~~~~v-----------~~~Pt~~~~~~~gg~~~~~~~G~~  106 (125)
T cd02951          75 ELARKYRV-----------RFTPTVIFLDPEGGKEIARLPGYL  106 (125)
T ss_pred             HHHHHcCC-----------ccccEEEEEcCCCCceeEEecCCC
Confidence            88999998           345788999999 89877666654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0541|consensus

Probab=98.79  E-value=7.4e-08  Score=78.71  Aligned_cols=136  Identities=18%  Similarity=0.262  Sum_probs=102.9

Q ss_pred             CCCCCCCCCceeeeEEcCc----ceeeecccc-CCCeEEEEEEeCCCCcCc-hHhHHHHHHHHHHHHhCCc-EEEEEeCC
Q psy17178        241 PFVSKPAPFWQGTAVVDGQ----LKEIKLSDY-YGKYLVFFFYPLDFTFVC-PTEILAFNDRLEEFHQINT-EVVAASVD  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~----g~~~~l~d~-~Gk~vvl~F~~a~~c~~C-~~~~~~l~~l~~~~~~~~v-~vv~Is~d  313 (384)
                      ..+|+..|+-+.....|..    +.+++++++ +||.++|+--|+..+|.| ..++|-+-.-.++++.+|+ +|+.||+|
T Consensus         9 i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn   88 (171)
T KOG0541|consen    9 IAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN   88 (171)
T ss_pred             ccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence            4578999983222111211    227889886 899999999999999995 6789999999999999998 57899999


Q ss_pred             CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC----CceeeEEEEEeCCceEEEEEecCC
Q psy17178        314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----GHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~----~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      +|..+++|.+.+.+     .-...++.|+.++..+.+|+...-.    |....+.-++-.||+|.+.....+
T Consensus        89 DpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~  155 (171)
T KOG0541|consen   89 DPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEG  155 (171)
T ss_pred             cHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccC
Confidence            99999999998832     3467889999999999998853311    233445555556999999776654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.75  E-value=2.6e-08  Score=78.52  Aligned_cols=78  Identities=12%  Similarity=0.090  Sum_probs=60.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .||+++|+|| ++||++|....+.+   .++.+.+++ ++.++.|+.+..+.                        ....
T Consensus        10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~------------------------~~~~   63 (104)
T cd02953          10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP------------------------EITA   63 (104)
T ss_pred             cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH------------------------HHHH
Confidence            5799999999 99999999998887   577777765 78888887653210                        0135


Q ss_pred             HHHHhCceecCCCceeeEEEEEeC-CceEEEEEe
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECY-KMVIVYWFE  378 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~-~G~i~~~~~  378 (384)
                      +.++|++      ..+|+++++++ +|+++.++.
T Consensus        64 ~~~~~~i------~~~Pti~~~~~~~g~~~~~~~   91 (104)
T cd02953          64 LLKRFGV------FGPPTYLFYGPGGEPEPLRLP   91 (104)
T ss_pred             HHHHcCC------CCCCEEEEECCCCCCCCcccc
Confidence            6678888      68999999998 899887554

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.72  E-value=1e-07  Score=75.75  Aligned_cols=73  Identities=12%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .++++||.|| |+||++|+...|.|.++.+++.+. +.++-|++|.                            ...+++
T Consensus        13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~----------------------------~~~la~   62 (114)
T cd02954          13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE----------------------------VPDFNK   62 (114)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC----------------------------CHHHHH
Confidence            4678999999 999999999999999999988533 5677777663                            235567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .|++      ...|+.+++. +|+++.+..
T Consensus        63 ~~~V------~~iPTf~~fk-~G~~v~~~~   85 (114)
T cd02954          63 MYEL------YDPPTVMFFF-RNKHMKIDL   85 (114)
T ss_pred             HcCC------CCCCEEEEEE-CCEEEEEEc
Confidence            7888      6788766664 888888654

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.71  E-value=6.4e-08  Score=77.06  Aligned_cols=78  Identities=8%  Similarity=0.105  Sum_probs=60.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|.|| ++||++|+...|.+.++.+++++.++.+..|..|...                           ..+.+
T Consensus        20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~---------------------------~~~~~   71 (109)
T cd02993          20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ---------------------------REFAK   71 (109)
T ss_pred             cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc---------------------------hhhHH
Confidence            5789999999 9999999999999999999998767888888877410                           11222


Q ss_pred             -HhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        349 -DYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       349 -~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                       .|++      ..+|++++++++++....|..+
T Consensus        72 ~~~~v------~~~Pti~~f~~~~~~~~~y~g~   98 (109)
T cd02993          72 EELQL------KSFPTILFFPKNSRQPIKYPSE   98 (109)
T ss_pred             hhcCC------CcCCEEEEEcCCCCCceeccCC
Confidence             4777      6788888888877766666543

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK09381 trxA thioredoxin; Provisional

Probab=98.70  E-value=8.2e-08  Score=76.33  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|+|| ++|||+|....|.++++.+++++ ++.+..|+.|..                            ..+.+
T Consensus        20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~----------------------------~~~~~   69 (109)
T PRK09381         20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   69 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC----------------------------hhHHH
Confidence            3678999999 99999999999999999999864 477888776531                            12456


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ...|+++++ ++|+++..+..
T Consensus        70 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   93 (109)
T PRK09381         70 KYGI------RGIPTLLLF-KNGEVAATKVG   93 (109)
T ss_pred             hCCC------CcCCEEEEE-eCCeEEEEecC
Confidence            7888      678988888 59999986653

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.69  E-value=1.7e-08  Score=80.67  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH--hCCcEEEEEeCCCHHh-HHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH--QINTEVVAASVDSHFT-HLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~--~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      +||+++++|| +.|||.|....+.+.+..+--.  +.++.++.++.+.... ...+.+..       +.  +.+.....+
T Consensus         4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~   73 (112)
T PF13098_consen    4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD-------GQ--KNVRLSNKE   73 (112)
T ss_dssp             TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT-------CH--SSCHHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc-------cc--hhhhHHHHH
Confidence            6899999999 9999999988888876544221  2368889998876543 33444422       22  111123358


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.+.||+      ..+|+++++|++|++++++.
T Consensus        74 l~~~~~v------~gtPt~~~~d~~G~~v~~~~  100 (112)
T PF13098_consen   74 LAQRYGV------NGTPTIVFLDKDGKIVYRIP  100 (112)
T ss_dssp             HHHHTT--------SSSEEEECTTTSCEEEEEE
T ss_pred             HHHHcCC------CccCEEEEEcCCCCEEEEec
Confidence            9999999      78999999999999998665

...

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.66  E-value=8.1e-08  Score=76.76  Aligned_cols=46  Identities=11%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         77 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        77 ~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ...|++++|.|| ++||++|+...|.+.++.+++++.++.+..|+.|
T Consensus        21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d   66 (111)
T cd02963          21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG   66 (111)
T ss_pred             ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc
Confidence            346899999999 9999999999999999999997667777777655

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.65  E-value=1.7e-07  Score=84.06  Aligned_cols=45  Identities=9%  Similarity=0.022  Sum_probs=31.3

Q ss_pred             ccCCCeEEEEEee--CCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         77 DYYGKYLVFFFYP--LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        77 ~~~gk~vvl~f~~--~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ..++...++.|..  +.|||+|+...|.+.++.+++.  ++++..+.+|
T Consensus        16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd   62 (215)
T TIGR02187        16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD   62 (215)
T ss_pred             hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence            3454555666773  3999999999999999988773  3454444444

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PTZ00051 thioredoxin; Provisional

Probab=98.63  E-value=2.4e-07  Score=71.98  Aligned_cols=75  Identities=12%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|+|| ++||++|+...+.++++.+++.  ++.++.|+.+.                            ...+.+
T Consensus        17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~   65 (98)
T PTZ00051         17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAE   65 (98)
T ss_pred             cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHH
Confidence            4688999999 9999999999999999998663  46677665431                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      +|++      ...|+++ +.++|+++..+....
T Consensus        66 ~~~v------~~~Pt~~-~~~~g~~~~~~~G~~   91 (98)
T PTZ00051         66 KENI------TSMPTFK-VFKNGSVVDTLLGAN   91 (98)
T ss_pred             HCCC------ceeeEEE-EEeCCeEEEEEeCCC
Confidence            8988      6788755 447999998776543

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.62  E-value=9.6e-08  Score=74.84  Aligned_cols=73  Identities=11%  Similarity=0.070  Sum_probs=55.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|+|| ++||++|+...|.+.++.+++++ .+.+..|+.|..                            ..+.+
T Consensus        17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~----------------------------~~~~~   66 (101)
T cd03003          17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD----------------------------RMLCR   66 (101)
T ss_pred             CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc----------------------------HHHHH
Confidence            5689999999 99999999999999999999864 377777777632                            23456


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|++      ..+|+.+++ ++|+....+.
T Consensus        67 ~~~v------~~~Pt~~~~-~~g~~~~~~~   89 (101)
T cd03003          67 SQGV------NSYPSLYVF-PSGMNPEKYY   89 (101)
T ss_pred             HcCC------CccCEEEEE-cCCCCcccCC
Confidence            6777      577777666 5777665444

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.62  E-value=6.1e-08  Score=78.18  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=38.2

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      +..+..+||+++|+|| ++||++|+...|.+.+..+... .+..++.|.+|.
T Consensus        12 l~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~   61 (117)
T cd02959          12 IKEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLED   61 (117)
T ss_pred             HHHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecC
Confidence            3444557899999999 9999999999999999766543 334566676663

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>KOG1651|consensus

Probab=98.61  E-value=2.9e-07  Score=76.38  Aligned_cols=125  Identities=14%  Similarity=0.095  Sum_probs=87.5

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHH
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF  316 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~  316 (384)
                      ..+-+|+..++   +|+.++|+.|+||++||.=. |+-|..-...-.+|+.++++|+++|+.|++.-=        .+.+
T Consensus        12 ~siydf~~~d~---~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~   87 (171)
T KOG1651|consen   12 GSIYDFSAKDL---DGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE   87 (171)
T ss_pred             cceeeeEEecC---CCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence            56778888855   99999999999998877776 898988887888999999999999999999942        3345


Q ss_pred             hHHHHhcCccccCCCCCcceeEEec------CchHHHHHhCceec-CCC--ce-eeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSD------LTHKISLDYGVYLS-DQG--HT-LDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D------~~~~~~~~~gv~~~-~~~--~~-~p~~~lId~~G~i~~~~~~  379 (384)
                      ++..++..  ++    +..||++.-      ....+.+-+.-... ..+  .. .=+-||||++|+++.+|..
T Consensus        88 Ei~~f~~~--r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p  154 (171)
T KOG1651|consen   88 EILNFVKV--RY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP  154 (171)
T ss_pred             HHHHHHHh--cc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence            66666642  22    667777642      22334333322100 001  11 1245999999999998864

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.61  E-value=2.1e-07  Score=72.82  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +|+ ++|+|| ++||++|+...|.++++.+.++..++.+..|+.|.                            +..+.+
T Consensus        16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~~~~   65 (101)
T cd02994          16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----------------------------EPGLSG   65 (101)
T ss_pred             CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------CHhHHH
Confidence            566 579999 99999999999999999987765566666665432                            224567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|++      ..+|+++++ ++|++ ..+.
T Consensus        66 ~~~i------~~~Pt~~~~-~~g~~-~~~~   87 (101)
T cd02994          66 RFFV------TALPTIYHA-KDGVF-RRYQ   87 (101)
T ss_pred             HcCC------cccCEEEEe-CCCCE-EEec
Confidence            8888      688888776 78986 4344

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.61  E-value=1.7e-07  Score=78.82  Aligned_cols=46  Identities=9%  Similarity=0.107  Sum_probs=40.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  315 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~  315 (384)
                      ++++++|+|| ++||++|....|.++++.+++.+.++.++.|+.|..
T Consensus        46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~   91 (152)
T cd02962          46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF   91 (152)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence            4678999999 999999999999999999998766799999988753

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0907|consensus

Probab=98.59  E-value=3.3e-07  Score=72.23  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=59.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|.+|++|+ |+||++|+...|.+.++..+|.+  +.++-|++|.   .                         ..+++
T Consensus        20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~-------------------------~~~~~   68 (106)
T KOG0907|consen   20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---L-------------------------EEVAK   68 (106)
T ss_pred             CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---C-------------------------HhHHH
Confidence            3688999998 99999999999999999999964  8889998884   1                         24567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      .|++      ...|+..++ ++|+.+..+...+
T Consensus        69 ~~~V------~~~PTf~f~-k~g~~~~~~vGa~   94 (106)
T KOG0907|consen   69 EFNV------KAMPTFVFY-KGGEEVDEVVGAN   94 (106)
T ss_pred             hcCc------eEeeEEEEE-ECCEEEEEEecCC
Confidence            7888      678877666 6888887666543

>PHA02278 thioredoxin-like protein

Probab=98.58  E-value=4.5e-07  Score=71.24  Aligned_cols=78  Identities=13%  Similarity=0.020  Sum_probs=59.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +++++||+|| |+||++|+...|.+.++.+++. ..+.++-|++|...                 .      | ...+++
T Consensus        13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~~~-----------------~------d-~~~l~~   66 (103)
T PHA02278         13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDAED-----------------V------D-REKAVK   66 (103)
T ss_pred             CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCccc-----------------c------c-cHHHHH
Confidence            5789999999 9999999999999999987753 33678888877321                 0      0 234678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ...|+.++.. +|+.+.+...
T Consensus        67 ~~~I------~~iPT~i~fk-~G~~v~~~~G   90 (103)
T PHA02278         67 LFDI------MSTPVLIGYK-DGQLVKKYED   90 (103)
T ss_pred             HCCC------ccccEEEEEE-CCEEEEEEeC
Confidence            8998      7888776665 8999886653

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.57  E-value=5.2e-07  Score=70.14  Aligned_cols=74  Identities=14%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++++|| ++||+.|....+.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~----------------------------~~~l~~   61 (97)
T cd02949          12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE----------------------------DQEIAE   61 (97)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence            5689999999 99999999999999999988863 46677666552                            124567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+.++++ +|+++..+..
T Consensus        62 ~~~v------~~vPt~~i~~-~g~~v~~~~g   85 (97)
T cd02949          62 AAGI------MGTPTVQFFK-DKELVKEISG   85 (97)
T ss_pred             HCCC------eeccEEEEEE-CCeEEEEEeC
Confidence            7888      6889999996 7999876654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.57  E-value=1.8e-07  Score=75.23  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             CCCeEEEEEEeC-------CCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178        269 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  341 (384)
Q Consensus       269 ~Gk~vvl~F~~a-------~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D  341 (384)
                      +|++++|.|| |       +||++|+...|.++++.++++ .++.++-|.+|...   .|                  .|
T Consensus        20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~~---~w------------------~d   76 (119)
T cd02952          20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDRP---YW------------------RD   76 (119)
T ss_pred             CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCcc---cc------------------cC
Confidence            5889999999 8       999999999999999999886 35889999887532   11                  13


Q ss_pred             CchHHHHHhCceecCCCc-eeeEEEEEeCCceEEE
Q psy17178        342 LTHKISLDYGVYLSDQGH-TLDKYCLECYKMVIVY  375 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~-~~p~~~lId~~G~i~~  375 (384)
                      +...+.+.|++      . .+|+.++++..++++.
T Consensus        77 ~~~~~~~~~~I------~~~iPT~~~~~~~~~l~~  105 (119)
T cd02952          77 PNNPFRTDPKL------TTGVPTLLRWKTPQRLVE  105 (119)
T ss_pred             cchhhHhccCc------ccCCCEEEEEcCCceecc
Confidence            34566777888      5 7888888876665543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.56  E-value=2.3e-07  Score=73.55  Aligned_cols=69  Identities=14%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .|++++|+|| ++||++|....|.+.++.+++++ .+.++.|+.|..                          ....+.+
T Consensus        17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~   68 (109)
T cd03002          17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG   68 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence            4788999999 99999999999999999998863 477888887742                          1245677


Q ss_pred             HhCceecCCCceeeEEEEEeCCc
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKM  371 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G  371 (384)
                      +|++      ..+|+++++++++
T Consensus        69 ~~~i------~~~Pt~~~~~~~~   85 (109)
T cd03002          69 KYGV------QGFPTLKVFRPPK   85 (109)
T ss_pred             HcCC------CcCCEEEEEeCCC
Confidence            8888      6789999998776

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG0910|consensus

Probab=98.55  E-value=3.5e-07  Score=75.19  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++|+|.|| |.||.+|+...|.|+++..+|.+ .+++.-|++|.                            ...++.
T Consensus        60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~----------------------------~~ela~  109 (150)
T KOG0910|consen   60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE----------------------------HPELAE  109 (150)
T ss_pred             cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc----------------------------ccchHh
Confidence            4689999999 99999999999999999999853 37777777763                            234567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .|+|      ...|++++++ +|+.+-.+.
T Consensus       110 ~Y~I------~avPtvlvfk-nGe~~d~~v  132 (150)
T KOG0910|consen  110 DYEI------SAVPTVLVFK-NGEKVDRFV  132 (150)
T ss_pred             hcce------eeeeEEEEEE-CCEEeeeec
Confidence            8988      6888888886 888875554

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.55  E-value=2.3e-07  Score=71.90  Aligned_cols=43  Identities=12%  Similarity=0.052  Sum_probs=35.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +|++++|+|| ++||++|+...|.+.++.+.+.+ .+.++.|+.|
T Consensus        11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~   53 (96)
T cd02956          11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCD   53 (96)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEecc
Confidence            5789999999 99999999999999999988854 3556666544

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.55  E-value=2.4e-07  Score=73.02  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  155 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  155 (384)
                      .||+++|.|| ++||++|+...+.+   .++.+.+++ ++.++.|+.+..+..                        ..+
T Consensus        10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~------------------------~~~   63 (104)
T cd02953          10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPE------------------------ITA   63 (104)
T ss_pred             cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHH------------------------HHH
Confidence            5789999999 99999999998877   567777765 788888876531100                        124


Q ss_pred             hHHhhcCcccCCCCcccceeEEEEEEEec-CCCcccccceee
Q psy17178        156 ISLDYGVYLSDQGPVRGSLLSTAIFVYAL-TSPVNGYAGGAL  196 (384)
Q Consensus       156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~-~G~v~~~~~g~~  196 (384)
                      ++++|++           ...|+++++++ +|++.....|..
T Consensus        64 ~~~~~~i-----------~~~Pti~~~~~~~g~~~~~~~G~~   94 (104)
T cd02953          64 LLKRFGV-----------FGPPTYLFYGPGGEPEPLRLPGFL   94 (104)
T ss_pred             HHHHcCC-----------CCCCEEEEECCCCCCCCccccccc
Confidence            5667777           23467788998 898877777755

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.55  E-value=1.6e-07  Score=73.89  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .|++++|+|| ++||++|+..+|.|.++++++++..+.++.|+.|
T Consensus        16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d   59 (102)
T cd02948          16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD   59 (102)
T ss_pred             cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence            4789999999 9999999999999999999886555666666655

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.55  E-value=4.2e-07  Score=71.49  Aligned_cols=75  Identities=7%  Similarity=0.021  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|.|| ++||++|+...|.++++.++++ ..+.+..|+.|.                            ...+.+
T Consensus        18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~   67 (104)
T cd03004          18 RKEPWLVDFY-APWCGPCQALLPELRKAARALK-GKVKVGSVDCQK----------------------------YESLCQ   67 (104)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCc----------------------------hHHHHH
Confidence            4679999999 9999999999999999999884 346666666552                            234567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+.++++++|+.+..|..
T Consensus        68 ~~~i------~~~Pt~~~~~~g~~~~~~~~G   92 (104)
T cd03004          68 QANI------RAYPTIRLYPGNASKYHSYNG   92 (104)
T ss_pred             HcCC------CcccEEEEEcCCCCCceEccC
Confidence            7888      678888888766577776654

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK10996 thioredoxin 2; Provisional

Probab=98.54  E-value=5e-07  Score=75.20  Aligned_cols=74  Identities=12%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|+...|.|+++++++.+ ++.++.|+.|.                            ...+.+
T Consensus        51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~  100 (139)
T PRK10996         51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA----------------------------ERELSA  100 (139)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999988753 46676665542                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|++++++ +|+++..+..
T Consensus       101 ~~~V------~~~Ptlii~~-~G~~v~~~~G  124 (139)
T PRK10996        101 RFRI------RSIPTIMIFK-NGQVVDMLNG  124 (139)
T ss_pred             hcCC------CccCEEEEEE-CCEEEEEEcC
Confidence            8998      6788877664 8999886653

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.54  E-value=2.9e-07  Score=72.56  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      ++++++|+|| ++||++|+...|.++++++++++.+  +.+..++.+.                            ...+
T Consensus        14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----------------------------~~~~   64 (104)
T cd03000          14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----------------------------YSSI   64 (104)
T ss_pred             cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----------------------------CHhH
Confidence            4578999999 9999999999999999999997644  4444444321                            2356


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceE
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .+.|++      ..+|++++++ +|.+
T Consensus        65 ~~~~~I------~~~Pt~~l~~-~~~~   84 (104)
T cd03000          65 ASEFGV------RGYPTIKLLK-GDLA   84 (104)
T ss_pred             HhhcCC------ccccEEEEEc-CCCc
Confidence            778888      6889999995 4543

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.53  E-value=2e-08  Score=80.27  Aligned_cols=98  Identities=15%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHH---HHHhCCcEEEEEeCCCHH-hHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLE---EFHQINTEVVAASVDSHF-THLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~---~~~~~~v~vi~Vs~d~~~-~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      .||++++.|| ..|||+|+...+.+.+..+   .+ ..++.++.++.+... ...++.+.   +    +.+.  +.....
T Consensus         4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~--~~~~~~   72 (112)
T PF13098_consen    4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYL-KDDFQVIFVNIDDSRDESEAVLDF---D----GQKN--VRLSNK   72 (112)
T ss_dssp             TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEE-HCECEEEECESHSHHHHHHHHHSH---T----CHSS--CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHh-hcCeEEEEEecCCccccccccccc---c----cchh--hhHHHH
Confidence            5789999999 9999999987777765433   23 236888888887644 33344441   1    2211  122235


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                      ++++.|||           ..+|+++++|++|++.....|...+
T Consensus        73 ~l~~~~~v-----------~gtPt~~~~d~~G~~v~~~~G~~~~  105 (112)
T PF13098_consen   73 ELAQRYGV-----------NGTPTIVFLDKDGKIVYRIPGYLSP  105 (112)
T ss_dssp             HHHHHTT-------------SSSEEEECTTTSCEEEEEESS--H
T ss_pred             HHHHHcCC-----------CccCEEEEEcCCCCEEEEecCCCCH
Confidence            79999998           3356788999999988777887754

...

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.53  E-value=3.8e-07  Score=71.30  Aligned_cols=72  Identities=8%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             eEEEEEEeCCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +++|+|| ++||++|+...|.++++++++++  .++.++.|..+.                            ...+.+.
T Consensus        18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~   68 (102)
T cd03005          18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------HRELCSE   68 (102)
T ss_pred             CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------ChhhHhh
Confidence            4899999 99999999999999999999976  346666665432                            2355677


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |++      ...|+++++ ++|+.+..+..
T Consensus        69 ~~v------~~~Pt~~~~-~~g~~~~~~~G   91 (102)
T cd03005          69 FQV------RGYPTLLLF-KDGEKVDKYKG   91 (102)
T ss_pred             cCC------CcCCEEEEE-eCCCeeeEeeC
Confidence            888      678988888 58887765553

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.51  E-value=5.8e-07  Score=70.47  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=55.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      ++++++|+|| ++||+.|+...|.++++.+.+++ ..+.++.|..+..                          ....+.
T Consensus        16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------------~~~~~~   68 (104)
T cd02997          16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--------------------------EHDALK   68 (104)
T ss_pred             hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--------------------------ccHHHH
Confidence            5678999999 99999999999999999998875 3355555554421                          124567


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.||+      ..+|+. ++.++|+++..+.
T Consensus        69 ~~~~i------~~~Pt~-~~~~~g~~~~~~~   92 (104)
T cd02997          69 EEYNV------KGFPTF-KYFENGKFVEKYE   92 (104)
T ss_pred             HhCCC------ccccEE-EEEeCCCeeEEeC
Confidence            78888      578875 4556888877554

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.51  E-value=7.6e-07  Score=68.97  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +|+++|+|| ++||+.|+...+.|.++.+++ ..++.++.|..+.                            ...+.++
T Consensus        14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~----------------------------~~~~~~~   63 (97)
T cd02984          14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE----------------------------LPEISEK   63 (97)
T ss_pred             CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc----------------------------CHHHHHh
Confidence            689999999 999999999999999999887 3456666664321                            1356778


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |++      ...|++++++ +|+++..+..
T Consensus        64 ~~i------~~~Pt~~~~~-~g~~~~~~~g   86 (97)
T cd02984          64 FEI------TAVPTFVFFR-NGTIVDRVSG   86 (97)
T ss_pred             cCC------ccccEEEEEE-CCEEEEEEeC
Confidence            998      6789877775 8999886654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.50  E-value=5.9e-07  Score=70.72  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--------HHhHHh
Q psy17178         59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------HFTHLA  130 (384)
Q Consensus        59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--------~~~~~~  130 (384)
                      +|+..++   +|++++|++|+||+++|.=. |+-|+.-. +...|++++++|+++|++|++.-.+.        .+..+.
T Consensus         3 df~~~~~---~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~   77 (108)
T PF00255_consen    3 DFSAKDI---DGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE   77 (108)
T ss_dssp             GSEEEBT---TSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred             ceeeeCC---CCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence            6888777   99999999999998777777 88899777 99999999999999999999986542        455666


Q ss_pred             hccCccccCCCCccceeEEe
Q psy17178        131 WVNTPRKEGGLGKLKIPLLS  150 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~  150 (384)
                      |...  +.    +.+||+..
T Consensus        78 ~~~~--~~----~~~F~vf~   91 (108)
T PF00255_consen   78 FCKE--KF----GVTFPVFE   91 (108)
T ss_dssp             HHCH--CH----T-SSEEBS
T ss_pred             HHHh--cc----CCcccceE
Confidence            6653  12    67888864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.50  E-value=6.6e-07  Score=70.99  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=55.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-----CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-----NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  343 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-----~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~  343 (384)
                      .+++++|+|| ++||+.|+...|.++++.+++++.     .+.+..|+                            .|.+
T Consensus        17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd----------------------------~d~~   67 (108)
T cd02996          17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVD----------------------------CDKE   67 (108)
T ss_pred             cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEE----------------------------CCCC
Confidence            4678999999 999999999999999999887542     12222232                            3444


Q ss_pred             hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCC
Q psy17178        344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNC  382 (384)
Q Consensus       344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~  382 (384)
                      ..+.++||+      ..+|+.++. ++|++......|..
T Consensus        68 ~~l~~~~~v------~~~Ptl~~~-~~g~~~~~~~~g~~   99 (108)
T cd02996          68 SDIADRYRI------NKYPTLKLF-RNGMMMKREYRGQR   99 (108)
T ss_pred             HHHHHhCCC------CcCCEEEEE-eCCcCcceecCCCC
Confidence            677888998      688988888 68885433333443

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.50  E-value=3e-07  Score=81.50  Aligned_cols=124  Identities=19%  Similarity=0.333  Sum_probs=86.7

Q ss_pred             cccccCCCCCCccEEEeeecCccce-EEcccc-CC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKE-IKLSDY-YG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~-~~l~~~-~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .....+|.+|||..+-++   +|++ .++.|+ +| +|+||+|...+ ||+=...+.+++++.++|.+. ++++.|....
T Consensus        70 ~~~a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~E  144 (237)
T PF00837_consen   70 FKEAKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEE  144 (237)
T ss_pred             ccceeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhh
Confidence            455679999999999888   8888 999999 55 79999999555 999999999999999999863 3344443211


Q ss_pred             ------------------HHhHH---hhccCccccCCCCccceeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEE
Q psy17178        125 ------------------HFTHL---AWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVY  182 (384)
Q Consensus       125 ------------------~~~~~---~~~~~~~~~~~~~~~~~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vi  182 (384)
                                        ..+++   .-++.+.++    ...+|++.|. ++...++||.+-           .| ++||
T Consensus       145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~P-----------eR-lyIi  208 (237)
T PF00837_consen  145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGALP-----------ER-LYII  208 (237)
T ss_pred             hCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCCc-----------ce-EEEE
Confidence                              00111   112222223    4679999987 588999999832           33 4566


Q ss_pred             ecCCCcccccce
Q psy17178        183 ALTSPVNGYAGG  194 (384)
Q Consensus       183 d~~G~v~~~~~g  194 (384)
                      . +|+|. |..|
T Consensus       209 ~-~gkv~-Y~Gg  218 (237)
T PF00837_consen  209 Q-DGKVV-YKGG  218 (237)
T ss_pred             E-CCEEE-EeCC
Confidence            4 99986 4444

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.48  E-value=1.7e-06  Score=76.78  Aligned_cols=119  Identities=18%  Similarity=0.234  Sum_probs=85.5

Q ss_pred             CCCCCCCCCceeeeEEcCccee-eecccc-C-CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-----
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKE-IKLSDY-Y-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-----  312 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~-~~l~d~-~-Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----  312 (384)
                      ..+|..+|+..+.++   +|+. .++-|| + ++++||+|. +..||+-+..+..++++.++|.+. +.++.|.+     
T Consensus        73 a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp  147 (237)
T PF00837_consen   73 AKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP  147 (237)
T ss_pred             eeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence            358999999999987   8888 999998 4 489999999 444899999999999999999863 45666632     


Q ss_pred             -C------C------H---HhHHHHhcCccccCCCCCcceeEEecCc-hHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        313 -D------S------H---FTHLAWVNTPRKEGGLGKLKIPLLSDLT-HKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       313 -d------~------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                       |      +      +   ++-.+-++.++++    ...+|++.|.- +...++||..      +. +.|||. +|||+|
T Consensus       148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~------Pe-RlyIi~-~gkv~Y  215 (237)
T PF00837_consen  148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGAL------PE-RLYIIQ-DGKVVY  215 (237)
T ss_pred             CCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCC------cc-eEEEEE-CCEEEE
Confidence             1      1      1   1111122223222    46788888765 7888999972      22 457775 999998


Q ss_pred             E
Q psy17178        376 W  376 (384)
Q Consensus       376 ~  376 (384)
                      .
T Consensus       216 ~  216 (237)
T PF00837_consen  216 K  216 (237)
T ss_pred             e
Confidence            4

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG1651|consensus

Probab=98.48  E-value=5.4e-07  Score=74.77  Aligned_cols=132  Identities=14%  Similarity=0.149  Sum_probs=90.2

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------CHH
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF  126 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~~~  126 (384)
                      ..+-+|+..++   +|+.++|+.|+||++++.=. |+.|..-..+-.+|++++++|+++|++|++.--+        +.+
T Consensus        12 ~siydf~~~d~---~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~   87 (171)
T KOG1651|consen   12 GSIYDFSAKDL---DGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE   87 (171)
T ss_pred             cceeeeEEecC---CCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence            45678998887   99999999999998887777 9999988888899999999999999999998543        233


Q ss_pred             hHHhhccCccccCCCCccceeEEe--eCcch-hHHhhcCcccCCCC-c-ccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLS--DLTHK-ISLDYGVYLSDQGP-V-RGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~-~~~~ygv~~~~~g~-~-~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ....|+..  +.    +..||++.  |.+|+ ..-.|.......+. . ..+.---.=|+||++|.|+....-..
T Consensus        88 Ei~~f~~~--r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt  156 (171)
T KOG1651|consen   88 EILNFVKV--RY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTT  156 (171)
T ss_pred             HHHHHHHh--cc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCC
Confidence            44555541  23    67788885  44432 22223333222221 1 11222245689999999986544433

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.47  E-value=8.8e-07  Score=70.81  Aligned_cols=44  Identities=9%  Similarity=0.082  Sum_probs=37.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .+++++|.|| ++||++|+...|.+.++.+++++. +.+..|+.|.
T Consensus        28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~   71 (113)
T cd03006          28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW   71 (113)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC
Confidence            4579999999 999999999999999999999643 7777777663

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.44  E-value=1.4e-06  Score=68.70  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=64.3

Q ss_pred             CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--------CCHHhHHH
Q psy17178        249 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTHLA  320 (384)
Q Consensus       249 ~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--------d~~~~~~~  320 (384)
                      +|+..   |.+|+.++|+.|+||++||.=. |+-|+.-. +...|++++++|+++|+.|+++--        ++.+++++
T Consensus         3 df~~~---~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~   77 (108)
T PF00255_consen    3 DFSAK---DIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE   77 (108)
T ss_dssp             GSEEE---BTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred             ceeee---CCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence            56776   4599999999999998777766 88888777 999999999999999999999953        34566777


Q ss_pred             HhcCccccCCCCCcceeEEe
Q psy17178        321 WVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~  340 (384)
                      ++...  +    +.+||+..
T Consensus        78 ~~~~~--~----~~~F~vf~   91 (108)
T PF00255_consen   78 FCKEK--F----GVTFPVFE   91 (108)
T ss_dssp             HHCHC--H----T-SSEEBS
T ss_pred             HHHhc--c----CCcccceE
Confidence            76652  1    67888864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.42  E-value=9.5e-07  Score=68.88  Aligned_cols=74  Identities=11%  Similarity=0.091  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC-cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~-v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      ++++++|+|| ++||+.|+...+.++++.+.++..+ +.++.+..|                            ....+.
T Consensus        12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------------------------~~~~~~   62 (102)
T TIGR01126        12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----------------------------AEKDLA   62 (102)
T ss_pred             cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----------------------------chHHHH
Confidence            6889999999 9999999999999999998886543 555444432                            124566


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.|++      ..+|+.+++++++. ...+.
T Consensus        63 ~~~~i------~~~P~~~~~~~~~~-~~~~~   86 (102)
T TIGR01126        63 SRFGV------SGFPTIKFFPKGKK-PVDYE   86 (102)
T ss_pred             HhCCC------CcCCEEEEecCCCc-ceeec
Confidence            78888      67899999998876 33343

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.41  E-value=2.1e-06  Score=67.86  Aligned_cols=46  Identities=20%  Similarity=0.150  Sum_probs=40.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+|++||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|...
T Consensus        13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~   58 (114)
T cd02986          13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP   58 (114)
T ss_pred             CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH
Confidence            5799999999 999999999999999999999533 788888888543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.37  E-value=1.1e-06  Score=68.83  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=57.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      .+|+++|.|| ++||+.|+...|.+.++.++++. .++.++.|+.+.+                           ...+.
T Consensus        17 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~   68 (105)
T cd02998          17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLA   68 (105)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhH
Confidence            3578999999 99999999999999999999863 3566666665431                           23557


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++|++      ..+|++++++++|+....+.
T Consensus        69 ~~~~i------~~~P~~~~~~~~~~~~~~~~   93 (105)
T cd02998          69 KKYGV------SGFPTLKFFPKGSTEPVKYE   93 (105)
T ss_pred             HhCCC------CCcCEEEEEeCCCCCccccC
Confidence            77888      67888888887766655444

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK09381 trxA thioredoxin; Provisional

Probab=98.37  E-value=1e-06  Score=69.95  Aligned_cols=43  Identities=12%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+++++|.|| ++|||+|+...|.++++.+++.+ ++.++.|+.|
T Consensus        20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~   62 (109)
T PRK09381         20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID   62 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECC
Confidence            3678999999 99999999999999999999864 4777777654

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.36  E-value=1.3e-06  Score=73.54  Aligned_cols=45  Identities=9%  Similarity=0.110  Sum_probs=39.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.|.
T Consensus        46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~   90 (152)
T cd02962          46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR   90 (152)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC
Confidence            4578999999 99999999999999999999876678888888775

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.30  E-value=2.3e-06  Score=68.10  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=35.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .++++||.|| ++||++|+.-.|.|.++.+++.+. +.++-|++|.
T Consensus        13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~   56 (114)
T cd02954          13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE   56 (114)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC
Confidence            3578999999 999999999999999999987532 4566666654

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.29  E-value=1.7e-06  Score=67.69  Aligned_cols=44  Identities=14%  Similarity=0.151  Sum_probs=37.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| +.||+.|+...|.+.++.++++. .+.+..|+.|.
T Consensus        17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~   60 (101)
T cd03003          17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD   60 (101)
T ss_pred             CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc
Confidence            4688999999 99999999999999999999864 36777777764

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.29  E-value=3.3e-06  Score=75.71  Aligned_cols=70  Identities=10%  Similarity=0.104  Sum_probs=54.4

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +++++|+|| ++||++|+...|.++++.+++++ .+.+..|..+                            .+..+.++
T Consensus        52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~----------------------------~~~~l~~~  101 (224)
T PTZ00443         52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDAT----------------------------RALNLAKR  101 (224)
T ss_pred             CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCc----------------------------ccHHHHHH
Confidence            578999999 99999999999999999998864 2444433322                            12457788


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      |++      ..+|++++++ +|+++..
T Consensus       102 ~~I------~~~PTl~~f~-~G~~v~~  121 (224)
T PTZ00443        102 FAI------KGYPTLLLFD-KGKMYQY  121 (224)
T ss_pred             cCC------CcCCEEEEEE-CCEEEEe
Confidence            999      7899999998 7887763

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.29  E-value=1.6e-06  Score=69.77  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=38.8

Q ss_pred             CCCeEEEEEeeC-------CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +|++++|.|| +       +|||+|+...|.+.++.++++ .++.++-|.+|.
T Consensus        20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~   70 (119)
T cd02952          20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGD   70 (119)
T ss_pred             CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCC
Confidence            5789999999 8       999999999999999999886 358888888875

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.27  E-value=2.6e-06  Score=65.79  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      ++++++|.|| +.||+.|....+.+.++.+.++ ..++.++.|+.+.                            ...+.
T Consensus        14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~   64 (101)
T cd02961          14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----------------------------NNDLC   64 (101)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----------------------------hHHHH
Confidence            4568999999 9999999999999999998885 3456666665432                            24566


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.|++      ...|+.++++++|+....+.
T Consensus        65 ~~~~i------~~~Pt~~~~~~~~~~~~~~~   89 (101)
T cd02961          65 SEYGV------RGYPTIKLFPNGSKEPVKYE   89 (101)
T ss_pred             HhCCC------CCCCEEEEEcCCCcccccCC
Confidence            77888      67889999988765555444

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.25  E-value=7.3e-06  Score=66.53  Aligned_cols=42  Identities=7%  Similarity=0.040  Sum_probs=36.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .|+.++|+|+ ++|||+|+...|.|.++.++   .++.++-|++|.
T Consensus        22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~   63 (122)
T TIGR01295        22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN   63 (122)
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence            4677899999 99999999999999999886   347789999873

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.25  E-value=3.3e-06  Score=65.99  Aligned_cols=41  Identities=12%  Similarity=0.218  Sum_probs=33.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  121 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs  121 (384)
                      +|+ ++|.|| ++||++|+...|.+.++.++++..++.+..|.
T Consensus        16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd   56 (101)
T cd02994          16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVD   56 (101)
T ss_pred             CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEE
Confidence            566 579999 99999999999999999987765556666554

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR01068 thioredoxin thioredoxin

Probab=98.24  E-value=5.4e-06  Score=64.32  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      ++.++|+|| ++||+.|....+.++++.+++.+ ++.++.|..|..                            ..+.++
T Consensus        14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~~   63 (101)
T TIGR01068        14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN----------------------------PDIAAK   63 (101)
T ss_pred             CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHHH
Confidence            568999999 99999999999999999988753 477777765521                            245667


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      |++      ...|+.+++ ++|++...+.
T Consensus        64 ~~v------~~~P~~~~~-~~g~~~~~~~   85 (101)
T TIGR01068        64 YGI------RSIPTLLLF-KNGKEVDRSV   85 (101)
T ss_pred             cCC------CcCCEEEEE-eCCcEeeeec
Confidence            888      678888888 5788776443

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.24  E-value=6.2e-06  Score=68.22  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .+|++||.|| ++||++|+...|.|.++.+++++. +.|+-|++|.
T Consensus        22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe   65 (142)
T PLN00410         22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE   65 (142)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC
Confidence            4689999999 999999999999999999988533 6677788774

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.24  E-value=7.1e-06  Score=64.84  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=59.3

Q ss_pred             CCCeEEEEEEeCCC--CcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~--c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      .|.++||.|| +.|  ||.|....|.|.++.++|.+. +.++-|+.|.                            +..+
T Consensus        26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~----------------------------~~~l   75 (111)
T cd02965          26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD----------------------------EQAL   75 (111)
T ss_pred             CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC----------------------------CHHH
Confidence            5677899999 886  999999999999999988543 5565666553                            2466


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW  384 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~  384 (384)
                      +.+|+|      ...|+.++.. +|+++.... |..+|
T Consensus        76 a~~f~V------~sIPTli~fk-dGk~v~~~~-G~~~~  105 (111)
T cd02965          76 AARFGV------LRTPALLFFR-DGRYVGVLA-GIRDW  105 (111)
T ss_pred             HHHcCC------CcCCEEEEEE-CCEEEEEEe-CccCH
Confidence            778999      7889776664 899998664 55444

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.24  E-value=3.4e-06  Score=66.76  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .|++++|.|| ++||++|+...|.+.++.++++. .+.++.|+.|.
T Consensus        17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~   60 (109)
T cd03002          17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDE   60 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCc
Confidence            4678999999 99999999999999999998863 47777777764

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.23  E-value=5.2e-06  Score=64.48  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|++++.|| ++||+.|+...+.+.++.+++.+ ++.++.|+.|
T Consensus        12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d   54 (97)
T cd02949          12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID   54 (97)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC
Confidence            4678999999 99999999999999999988753 4666666654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PRK10996 thioredoxin 2; Provisional

Probab=98.23  E-value=5.1e-06  Score=69.17  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=53.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|+|| ++||++|+...|.|.++.+++.+ ++.++.|..|.                            ..++++
T Consensus        51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~  100 (139)
T PRK10996         51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA----------------------------ERELSA  100 (139)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999988753 46666664432                            234677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|+|        ++++   +++++ ++|++.....|..
T Consensus       101 ~~~V--------~~~P---tlii~-~~G~~v~~~~G~~  126 (139)
T PRK10996        101 RFRI--------RSIP---TIMIF-KNGQVVDMLNGAV  126 (139)
T ss_pred             hcCC--------CccC---EEEEE-ECCEEEEEEcCCC
Confidence            7887        2333   33444 5888876666643

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.19  E-value=2e-05  Score=63.10  Aligned_cols=72  Identities=13%  Similarity=0.059  Sum_probs=55.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|+|| +.||++|+...|.|.++.+++.  ++.++-|..|..                            ..+++
T Consensus        21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~----------------------------~~l~~   69 (113)
T cd02989          21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKA----------------------------PFLVE   69 (113)
T ss_pred             CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccC----------------------------HHHHH
Confidence            4578999999 9999999999999999998874  467777766531                            24567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|++      ...|+.++.. +|+++.++.
T Consensus        70 ~~~v------~~vPt~l~fk-~G~~v~~~~   92 (113)
T cd02989          70 KLNI------KVLPTVILFK-NGKTVDRIV   92 (113)
T ss_pred             HCCC------ccCCEEEEEE-CCEEEEEEE
Confidence            7888      6788766665 888887554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PTZ00051 thioredoxin; Provisional

Probab=98.19  E-value=7e-06  Score=63.64  Aligned_cols=74  Identities=15%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+++++|+|| ++||++|+...+.+.++.+++.  ++.++.|+.+.                            ...+++
T Consensus        17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~   65 (98)
T PTZ00051         17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAE   65 (98)
T ss_pred             cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHH
Confidence            3678999999 9999999999999999888653  45565554431                            235667


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .|++        +   ..|+ +++.++|++.+...|.
T Consensus        66 ~~~v--------~---~~Pt-~~~~~~g~~~~~~~G~   90 (98)
T PTZ00051         66 KENI--------T---SMPT-FKVFKNGSVVDTLLGA   90 (98)
T ss_pred             HCCC--------c---eeeE-EEEEeCCeEEEEEeCC
Confidence            7777        2   2343 4555899888777774

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.17  E-value=4.4e-06  Score=67.35  Aligned_cols=49  Identities=16%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             EccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         74 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        74 ~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ..+..+||+++|.|| ++||++|+...|.+.+..+... .+..++.|.+|.
T Consensus        13 ~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~   61 (117)
T cd02959          13 KEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLED   61 (117)
T ss_pred             HHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecC
Confidence            334446899999999 9999999999999988766543 334555565553

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.17  E-value=6.6e-06  Score=64.39  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=34.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-CcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~v~vi~Vs~d  123 (384)
                      ++++++|+|| ++||++|+...|.++++.+.+++. .+.++.|..+
T Consensus        16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   60 (104)
T cd02997          16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT   60 (104)
T ss_pred             hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC
Confidence            4678999999 999999999999999999988643 3444445433

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.17  E-value=1.5e-05  Score=63.84  Aligned_cols=70  Identities=11%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +++++|.|| +.||++|....|.++++.+++.  ++.++-|+.+.                            . .++++
T Consensus        24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------~-~l~~~   71 (113)
T cd02957          24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------A-FLVNY   71 (113)
T ss_pred             CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------h-HHHHh
Confidence            479999999 9999999999999999998874  45565555442                            1 34566


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      |++      ..+|+.++. ++|+++..+.
T Consensus        72 ~~i------~~~Pt~~~f-~~G~~v~~~~   93 (113)
T cd02957          72 LDI------KVLPTLLVY-KNGELIDNIV   93 (113)
T ss_pred             cCC------CcCCEEEEE-ECCEEEEEEe
Confidence            777      577866555 4888888665

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.16  E-value=1.8e-05  Score=61.58  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .++++||.|| +.||+.|....|.++++.+++.+ ++.++-|..+..                            ..+.+
T Consensus        16 ~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~----------------------------~~l~~   65 (103)
T PF00085_consen   16 SDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN----------------------------KELCK   65 (103)
T ss_dssp             TSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS----------------------------HHHHH
T ss_pred             cCCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhcc----------------------------chhhh
Confidence            3689999999 99999999999999999999876 777777776521                            34567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+.+++. +|+....+..
T Consensus        66 ~~~v------~~~Pt~~~~~-~g~~~~~~~g   89 (103)
T PF00085_consen   66 KYGV------KSVPTIIFFK-NGKEVKRYNG   89 (103)
T ss_dssp             HTTC------SSSSEEEEEE-TTEEEEEEES
T ss_pred             ccCC------CCCCEEEEEE-CCcEEEEEEC
Confidence            7888      6788877775 6666665553

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.16  E-value=9.8e-06  Score=63.33  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=49.7

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +++++|.|| ++||+.|+...|.+.++.++++. .+.+..+..|.                            ...+.++
T Consensus        18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------~~~~~~~   67 (103)
T cd03001          18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------HQSLAQQ   67 (103)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------hHHHHHH
Confidence            567899999 99999999999999999988753 36666665432                            2355677


Q ss_pred             hCceecCCCceeeEEEEEeCC
Q psy17178        350 YGVYLSDQGHTLDKYCLECYK  370 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~  370 (384)
                      |++      ..+|++++++++
T Consensus        68 ~~i------~~~P~~~~~~~~   82 (103)
T cd03001          68 YGV------RGFPTIKVFGAG   82 (103)
T ss_pred             CCC------CccCEEEEECCC
Confidence            888      578888888744

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.14  E-value=1e-05  Score=63.57  Aligned_cols=44  Identities=9%  Similarity=0.141  Sum_probs=35.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| ++||++|+...|.+.++.++++. ++.+..|+.|.
T Consensus        18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~   61 (104)
T cd03004          18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK   61 (104)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc
Confidence            3579999999 99999999999999999998843 46666666553

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.14  E-value=8.4e-06  Score=63.02  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  121 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs  121 (384)
                      +++++|+|| ++||++|+...+.|.++.+++ ..++.++.|.
T Consensus        14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd   53 (97)
T cd02984          14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIE   53 (97)
T ss_pred             CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEc
Confidence            689999999 999999999999999999886 3456666654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=98.14  E-value=1.9e-05  Score=68.82  Aligned_cols=126  Identities=14%  Similarity=0.153  Sum_probs=92.4

Q ss_pred             CCCCCCccEEEeeecCccceEEcccc-CCCe-EEEEEee-----CCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDY-YGKY-LVFFFYP-----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  125 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~-vvl~f~~-----~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~  125 (384)
                      .+..-.+..+...   + .+++|.|+ .||- .||+-|.     ..-||.|...+..++.....+.++++.+++||..+.
T Consensus        42 ~v~v~~~Y~F~g~---~-G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~  117 (211)
T PF05988_consen   42 MVEVDKDYVFDGP---D-GPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPL  117 (211)
T ss_pred             CccCCCCeEEeCC---C-CcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCH
Confidence            3444444555322   4 45999999 7763 4444432     456999999999998888889999999999999999


Q ss_pred             HhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +.+.+|++.+       +++||.+|.....+...|++..++.+.    ...-++|+-|. |+|....+.
T Consensus       118 ~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~----~~g~svF~Rdg-~~VfhTyst  174 (211)
T PF05988_consen  118 EKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGE----MPGLSVFLRDG-GRVFHTYST  174 (211)
T ss_pred             HHHHHHHHhc-------CCCceEEEcCCCcccccccceeccCCC----ceeEEEEEEcC-CEEEEEeec
Confidence            9999999976       899999999989999999986554221    22234566666 777644433

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.14  E-value=6.2e-06  Score=64.34  Aligned_cols=40  Identities=8%  Similarity=0.179  Sum_probs=33.1

Q ss_pred             eEEEEEeeCCCCCCchHHHHHHHHhHHHHHh--CCcEEEEEeC
Q psy17178         82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASV  122 (384)
Q Consensus        82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~  122 (384)
                      +++|.|| +.||++|+..+|.+.++++++++  .++.++.|..
T Consensus        18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~   59 (102)
T cd03005          18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC   59 (102)
T ss_pred             CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC
Confidence            5899999 99999999999999999999875  3455655543

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.13  E-value=2.9e-05  Score=58.62  Aligned_cols=71  Identities=18%  Similarity=0.216  Sum_probs=54.5

Q ss_pred             CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHh
Q psy17178        271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY  350 (384)
Q Consensus       271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~  350 (384)
                      ++++|.|| +.||+.|....+.++++.++  ..++.++.|+.+.                            ...+.+.|
T Consensus        11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~~   59 (93)
T cd02947          11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEEY   59 (93)
T ss_pred             CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHhc
Confidence            78899999 99999999999999999876  4567787777653                            23445667


Q ss_pred             CceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        351 GVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       351 gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++      ...|++++++ +|+++..+..
T Consensus        60 ~v------~~~P~~~~~~-~g~~~~~~~g   81 (93)
T cd02947          60 GV------RSIPTFLFFK-NGKEVDRVVG   81 (93)
T ss_pred             Cc------ccccEEEEEE-CCEEEEEEec
Confidence            77      5778877775 6777776654

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.11  E-value=1.3e-05  Score=64.34  Aligned_cols=42  Identities=12%  Similarity=0.171  Sum_probs=33.9

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-C-cEEEEEeC
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAASV  312 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~-v~vv~Is~  312 (384)
                      +|+++|+|| ++||++|+...|.++++.+++++. + +.+..|+.
T Consensus        19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~   62 (114)
T cd02992          19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC   62 (114)
T ss_pred             CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec
Confidence            479999999 999999999999999999988652 2 45545543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.10  E-value=1.5e-05  Score=71.16  Aligned_cols=91  Identities=19%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      -.+.++.+++-+++|+ .+.|+.|....|.|+.+.+++   |+.|+.||.|...                ...||-... 
T Consensus       113 ~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~----------------~~~fp~~~~-  171 (215)
T PF13728_consen  113 KALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP----------------IPSFPNPRP-  171 (215)
T ss_pred             HHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC----------------CcCCCCCCC-
Confidence            3445667889999998 778999999999999999988   7999999998421                112222211 


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +..+++.+|+      ..+|++||++++++-.+.--.|
T Consensus       172 ~~g~~~~l~v------~~~Pal~Lv~~~~~~~~pv~~G  203 (215)
T PF13728_consen  172 DPGQAKRLGV------KVTPALFLVNPNTKKWYPVSQG  203 (215)
T ss_pred             CHHHHHHcCC------CcCCEEEEEECCCCeEEEEeee
Confidence            4567788999      6899999999998554444334

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.10  E-value=8.1e-06  Score=64.87  Aligned_cols=45  Identities=13%  Similarity=0.251  Sum_probs=40.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +||+++|.|| ++|||+|+...|.+.++.+++++.++.+..|..|.
T Consensus        20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~   64 (109)
T cd02993          20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG   64 (109)
T ss_pred             cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence            5789999999 99999999999999999999987678888887775

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.08  E-value=5.4e-06  Score=84.88  Aligned_cols=76  Identities=14%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      +..+||+++|+|| ++||+.|+...+..   .++.++++  ++.++-|+.++.+                        +.
T Consensus       470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~~  522 (571)
T PRK00293        470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------AE  522 (571)
T ss_pred             HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------hh
Confidence            3446899999999 99999999876654   55666663  5777777765321                        11


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                      ..++.++|++      ...|+++++|++|+++
T Consensus       523 ~~~l~~~~~v------~g~Pt~~~~~~~G~~i  548 (571)
T PRK00293        523 DVALLKHYNV------LGLPTILFFDAQGQEI  548 (571)
T ss_pred             hHHHHHHcCC------CCCCEEEEECCCCCCc
Confidence            2467788998      6889999999999985

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.07  E-value=1.5e-05  Score=78.74  Aligned_cols=45  Identities=11%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      +++++||+|| ++||++|+...|.++++.+++++.++.|+.|+.|.
T Consensus       370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~  414 (463)
T TIGR00424       370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG  414 (463)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence            5789999999 99999999999999999999987778888898874

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=98.03  E-value=6.2e-05  Score=65.63  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             CCCCCceeeeEEcCcceeeecccc-CCC--eEEEEEEe----CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDY-YGK--YLVFFFYP----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~-~Gk--~vvl~F~~----a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      ..-.+..+.   ..+| +++|.|+ .||  .+|..|++    ..-||.|...+..++.....+..+++.++.||..+.++
T Consensus        44 ~v~~~Y~F~---g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~  119 (211)
T PF05988_consen   44 EVDKDYVFD---GPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEK  119 (211)
T ss_pred             cCCCCeEEe---CCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHH
Confidence            333345553   2255 4999996 675  34444443    45699999999999888888989999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC-ceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~-~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +..|.++.       +++||.++..+......|++...+.+ .+.=..|+-| +|+|...|..
T Consensus       120 i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rd-g~~VfhTyst  174 (211)
T PF05988_consen  120 IEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRD-GGRVFHTYST  174 (211)
T ss_pred             HHHHHHhc-------CCCceEEEcCCCcccccccceeccCCCceeEEEEEEc-CCEEEEEeec
Confidence            99999988       99999999998888889998544322 2222446666 4898887653

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.03  E-value=4.4e-05  Score=61.59  Aligned_cols=71  Identities=4%  Similarity=-0.063  Sum_probs=53.2

Q ss_pred             CeEEEEEEeCCCCcC--ch--HhHHHHHHHHHHH-HhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        271 KYLVFFFYPLDFTFV--CP--TEILAFNDRLEEF-HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       271 k~vvl~F~~a~~c~~--C~--~~~~~l~~l~~~~-~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      +++|++|| ++||++  |+  ...|.+.++..++ ++.++.++-|++|.                            +..
T Consensus        28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~----------------------------~~~   78 (120)
T cd03065          28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK----------------------------DAK   78 (120)
T ss_pred             ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC----------------------------CHH
Confidence            47777777 999987  99  7777788887776 34567777777763                            245


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++++||+      ..+|+.++.. +|+++. +.
T Consensus        79 La~~~~I------~~iPTl~lfk-~G~~v~-~~  103 (120)
T cd03065          79 VAKKLGL------DEEDSIYVFK-DDEVIE-YD  103 (120)
T ss_pred             HHHHcCC------ccccEEEEEE-CCEEEE-ee
Confidence            6778999      7899888885 899876 54

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.03  E-value=2.6e-05  Score=63.37  Aligned_cols=85  Identities=7%  Similarity=-0.074  Sum_probs=51.7

Q ss_pred             ccccCCCeEEEEEEeCCCCcCchHhHHH-H--HHHHHHHHhCCcEEEEEeCCCHHhHH-HHhcCccccCCCCCcceeEEe
Q psy17178        265 LSDYYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVDSHFTHL-AWVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~-l--~~l~~~~~~~~v~vv~Is~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  340 (384)
                      .+.-.||+++|+|+ ++||+.|+..-.. +  .++.+.+. +++.+|-|..+...... .+.+                 
T Consensus        10 ~Ak~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~-----------------   70 (124)
T cd02955          10 KARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN-----------------   70 (124)
T ss_pred             HHHHcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH-----------------
Confidence            34447899999998 9999999876542 2  23444332 34555555443211111 1111                 


Q ss_pred             cCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        341 DLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                          .....||+      ...|+++++|++|++++...
T Consensus        71 ----~~~~~~~~------~G~Pt~vfl~~~G~~~~~~~   98 (124)
T cd02955          71 ----AAQAMTGQ------GGWPLNVFLTPDLKPFFGGT   98 (124)
T ss_pred             ----HHHHhcCC------CCCCEEEEECCCCCEEeeee
Confidence                11224566      57899999999999997553

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=98.02  E-value=5.5e-05  Score=60.68  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecC----------------
Q psy17178        293 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD----------------  356 (384)
Q Consensus       293 l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~----------------  356 (384)
                      |.+..+++++.|+++++|+.++++..++|++..       .++++++.|++.++.+++|+....                
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~   74 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI   74 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence            566788888899999999999997799999775       899999999999999999885311                


Q ss_pred             --------------CC--ceeeEEEEEeCCceEEEEEecC
Q psy17178        357 --------------QG--HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       357 --------------~~--~~~p~~~lId~~G~i~~~~~~~  380 (384)
                                    .|  .....+||+|++|+|++.|+..
T Consensus        75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~~  114 (115)
T PF13911_consen   75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRDR  114 (115)
T ss_pred             HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEecC
Confidence                          00  2244689999999999988753

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.02  E-value=1.6e-05  Score=62.13  Aligned_cols=44  Identities=14%  Similarity=0.202  Sum_probs=35.5

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~  124 (384)
                      +++++|.|| ++||+.|+...|.+.++.++++. .++.++.|..+.
T Consensus        18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   62 (105)
T cd02998          18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE   62 (105)
T ss_pred             CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence            568999999 99999999999999999999863 346666665443

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.00  E-value=4.3e-05  Score=61.14  Aligned_cols=63  Identities=14%  Similarity=0.048  Sum_probs=47.5

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      ++.++|+|| ++||++|+...|.++++.+++  ..+.++-|+.|..                            ..++++
T Consensus        22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~----------------------------~~l~~~   70 (113)
T cd02975          22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED----------------------------KEKAEK   70 (113)
T ss_pred             CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC----------------------------HHHHHH
Confidence            455777777 999999999999999998775  4477777776631                            245667


Q ss_pred             hCceecCCCceeeEEEEEeC
Q psy17178        350 YGVYLSDQGHTLDKYCLECY  369 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~  369 (384)
                      |++      .+.|++++.+.
T Consensus        71 ~~v------~~vPt~~i~~~   84 (113)
T cd02975          71 YGV------ERVPTTIFLQD   84 (113)
T ss_pred             cCC------CcCCEEEEEeC
Confidence            888      67888777764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG0907|consensus

Probab=97.99  E-value=9.2e-06  Score=64.00  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=38.2

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +|.+|+.|+ ++||++|+.-.|.+.++.++|.+  +.++-|++|.
T Consensus        21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde   62 (106)
T KOG0907|consen   21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE   62 (106)
T ss_pred             CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence            588899998 99999999999999999999965  8888898886

>KOG0910|consensus

Probab=97.99  E-value=1.5e-05  Score=65.73  Aligned_cols=43  Identities=9%  Similarity=0.089  Sum_probs=35.6

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++||+|.|| |.||.+|+.-.|.|+++.++|+ ..+.+.-|++|.
T Consensus        61 ~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~-g~~k~~kvdtD~  103 (150)
T KOG0910|consen   61 DVPVLVDFH-AEWCGPCKMLGPILEELVSEYA-GKFKLYKVDTDE  103 (150)
T ss_pred             CCCEEEEEe-cCcCccHhHhhHHHHHHHHhhc-CeEEEEEEcccc
Confidence            579999999 9999999999999999999884 346666665554

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.98  E-value=1.7e-05  Score=62.31  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=30.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  114 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~  114 (384)
                      ++++++|.|| ++|||+|+...|.+.++++++++.+
T Consensus        14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~   48 (104)
T cd03000          14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSG   48 (104)
T ss_pred             cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcC
Confidence            3578999999 9999999999999999999987544

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.98  E-value=1.9e-05  Score=63.12  Aligned_cols=44  Identities=9%  Similarity=0.082  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| ++||++|+...|.+.++.+++++. +.+..|+.|.
T Consensus        28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~   71 (113)
T cd03006          28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW   71 (113)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC
Confidence            4578999999 999999999999999999998643 7777887765

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.96  E-value=2.1e-05  Score=61.20  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC-cEEEEE
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAA  120 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-v~vi~V  120 (384)
                      ++++++|.|| ++||+.|+...+.+.++.+.++..+ +.+..+
T Consensus        12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~   53 (102)
T TIGR01126        12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKV   53 (102)
T ss_pred             cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEE
Confidence            6889999999 9999999999999999988876543 444433

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.2e-05  Score=71.74  Aligned_cols=73  Identities=11%  Similarity=0.123  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +-++|||+|| +.||++|..-+|.|+++..+|+.+ +.+.-|+.|.                            +..++.
T Consensus        42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~----------------------------~p~vAa   91 (304)
T COG3118          42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA----------------------------EPMVAA   91 (304)
T ss_pred             cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc----------------------------chhHHH
Confidence            4569999999 999999999999999999999743 6666666663                            234566


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +||+      ..+|++|++- +|+-+--|.
T Consensus        92 qfgi------qsIPtV~af~-dGqpVdgF~  114 (304)
T COG3118          92 QFGV------QSIPTVYAFK-DGQPVDGFQ  114 (304)
T ss_pred             HhCc------CcCCeEEEee-CCcCccccC
Confidence            7888      6778777773 777665554

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.95  E-value=2.1e-05  Score=70.26  Aligned_cols=92  Identities=18%  Similarity=0.267  Sum_probs=66.9

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      .-.+.++.+++.+++|+ ...||+|..+.|.|+.+.+++   |+.|+.||.|..... .               ||-...
T Consensus       112 ~~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~-~---------------fp~~~~  171 (215)
T PF13728_consen  112 DKALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP-S---------------FPNPRP  171 (215)
T ss_pred             HHHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc-C---------------CCCCCC
Confidence            34566777889999999 567999999999999999886   899999999963211 2               221111


Q ss_pred             CcchhHHhhcCcccCCCCcccceeEEEEEEEecCC-Cccccccee
Q psy17178        152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTS-PVNGYAGGA  195 (384)
Q Consensus       152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G-~v~~~~~g~  195 (384)
                       +..+++.+||           ..+|++|++++++ ++.-+.-|.
T Consensus       172 -~~g~~~~l~v-----------~~~Pal~Lv~~~~~~~~pv~~G~  204 (215)
T PF13728_consen  172 -DPGQAKRLGV-----------KVTPALFLVNPNTKKWYPVSQGF  204 (215)
T ss_pred             -CHHHHHHcCC-----------CcCCEEEEEECCCCeEEEEeeec
Confidence             5567888998           3568999999988 444333333

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=97.88  E-value=2.8e-05  Score=61.48  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|+|||.|+ ++|||+|+..-|.|.++.+++++. +.++-|.+|.
T Consensus        13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe   56 (114)
T cd02986          13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK   56 (114)
T ss_pred             CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc
Confidence            5789999999 999999999999999999998532 7777887775

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.87  E-value=5.8e-05  Score=68.80  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      -.+.++.+++-+++|+ .+.||.|....|.|+.+.++|   |+.|++||+|..-                ...||.... 
T Consensus       143 ~~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~----------------~p~fp~~~~-  201 (256)
T TIGR02739       143 KAIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL----------------IPGLPNSRS-  201 (256)
T ss_pred             HHHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCccC-
Confidence            4455667789999999 677999999999999999988   6999999999421                122333322 


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +...++.+|+      ..+|++||++++.+..+.--.|
T Consensus       202 d~gqa~~l~v------~~~Pal~Lv~~~t~~~~pv~~G  233 (256)
T TIGR02739       202 DSGQAQHLGV------KYFPALYLVNPKSQKMSPLAYG  233 (256)
T ss_pred             ChHHHHhcCC------ccCceEEEEECCCCcEEEEeec
Confidence            4556788999      6899999999995544433333

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR01068 thioredoxin thioredoxin

Probab=97.86  E-value=4.5e-05  Score=59.02  Aligned_cols=42  Identities=17%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++++|.|| +.||+.|+...+.|+++.+++.+ ++.++.|..+
T Consensus        14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~   55 (101)
T TIGR01068        14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVD   55 (101)
T ss_pred             CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECC
Confidence            468999999 99999999999999999888753 4777777654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PHA02278 thioredoxin-like protein

Probab=97.85  E-value=3.6e-05  Score=60.47  Aligned_cols=44  Identities=14%  Similarity=0.062  Sum_probs=36.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .++++||.|| ++||++|+...|.+.++.+++. ..+.++-|++|.
T Consensus        13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~   56 (103)
T PHA02278         13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA   56 (103)
T ss_pred             CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence            5789999999 9999999999999999987643 235677777764

>PTZ00102 disulphide isomerase; Provisional

Probab=97.85  E-value=0.00012  Score=73.78  Aligned_cols=70  Identities=7%  Similarity=0.121  Sum_probs=51.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +++.++|.|| +.||+.|+...|.+.++.+.+++.+  +.+..|..+                            .+..+
T Consensus        48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~----------------------------~~~~l   98 (477)
T PTZ00102         48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT----------------------------EEMEL   98 (477)
T ss_pred             cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC----------------------------CCHHH
Confidence            5788999999 9999999999999999988876543  334333322                            23456


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceE
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .++|++      ..+|+.++++..+.+
T Consensus        99 ~~~~~i------~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102         99 AQEFGV------RGYPTIKFFNKGNPV  119 (477)
T ss_pred             HHhcCC------CcccEEEEEECCceE
Confidence            777888      678888888765554

>PLN02309 5'-adenylylsulfate reductase

Probab=97.84  E-value=7.7e-05  Score=73.69  Aligned_cols=44  Identities=11%  Similarity=0.202  Sum_probs=40.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      ++|+++|+|| +.||++|+...|.+.++.++++..++.|..|+.|
T Consensus       364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d  407 (457)
T PLN02309        364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD  407 (457)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            5789999999 9999999999999999999998778888888877

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.84  E-value=0.00011  Score=63.60  Aligned_cols=70  Identities=10%  Similarity=0.018  Sum_probs=53.0

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      ++++||+|| +.||++|....|.|.++.++|.  .+.++-|+.|..                             .++..
T Consensus        83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-----------------------------~l~~~  130 (175)
T cd02987          83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-----------------------------GASDE  130 (175)
T ss_pred             CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-----------------------------hhHHh
Confidence            458999999 9999999999999999999874  577777776621                             23445


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      |++      ..+|+.+++ ++|+++..+.
T Consensus       131 f~v------~~vPTllly-k~G~~v~~~v  152 (175)
T cd02987         131 FDT------DALPALLVY-KGGELIGNFV  152 (175)
T ss_pred             CCC------CCCCEEEEE-ECCEEEEEEe
Confidence            676      567766666 4788887664

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.83  E-value=5.3e-05  Score=58.29  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=34.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d  123 (384)
                      ++++++|.|| +.||+.|+...+.+.++.+.++ ..++.++.|+.+
T Consensus        14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~   58 (101)
T cd02961          14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT   58 (101)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence            3458999999 9999999999999999988875 345555555443

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.81  E-value=7.1e-05  Score=67.83  Aligned_cols=85  Identities=19%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      -.+.++.+++-|++|+ .+.||.|....|.|+.+.+++   |+.|++||+|-.-                ...||... .
T Consensus       136 ~~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------~p~fp~~~-~  194 (248)
T PRK13703        136 QAIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------NPLLPDSR-T  194 (248)
T ss_pred             HHHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCCc-c
Confidence            3455667788999999 677999999999999999988   6999999998421                12333322 2


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                      +...++.+|+      ..+|++||++++.+-.
T Consensus       195 d~gqa~~l~v------~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        195 DQGQAQRLGV------KYFPALMLVDPKSGSV  220 (248)
T ss_pred             ChhHHHhcCC------cccceEEEEECCCCcE
Confidence            3344578998      6889999999996433

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.81  E-value=4.3e-05  Score=68.54  Aligned_cols=39  Identities=13%  Similarity=0.150  Sum_probs=31.9

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEE
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  120 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~V  120 (384)
                      +++++|.|| ++||++|+...|.++++.+++++ .+.+..|
T Consensus        52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~V   90 (224)
T PTZ00443         52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADL   90 (224)
T ss_pred             CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEe
Confidence            578999999 99999999999999999998863 2444434

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.78  E-value=0.00017  Score=53.76  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .|..|| ++||+.|....+.++++.++++. .+.++-|+.+
T Consensus         2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~   40 (82)
T TIGR00411         2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM   40 (82)
T ss_pred             EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence            355677 99999999999999999988853 3677777664

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PTZ00102 disulphide isomerase; Provisional

Probab=97.77  E-value=7.1e-05  Score=75.29  Aligned_cols=75  Identities=9%  Similarity=0.043  Sum_probs=55.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      .||.++|+|| ++||++|+...|.++++.+.+++. .+.+.-|+.+..                            ....
T Consensus       374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~----------------------------~~~~  424 (477)
T PTZ00102        374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN----------------------------ETPL  424 (477)
T ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC----------------------------ccch
Confidence            5899999999 999999999999999999988764 355555554421                            1124


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.|++      ..+|+.++++++|++...+.
T Consensus       425 ~~~~v------~~~Pt~~~~~~~~~~~~~~~  449 (477)
T PTZ00102        425 EEFSW------SAFPTILFVKAGERTPIPYE  449 (477)
T ss_pred             hcCCC------cccCeEEEEECCCcceeEec
Confidence            56776      67899999998887654444

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.76  E-value=3.8e-05  Score=78.73  Aligned_cols=84  Identities=14%  Similarity=0.132  Sum_probs=55.5

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      .++.+||+|+|+|| ++||++|+...+..   .+..++++  ++.++-|..+..+                        +
T Consensus       469 ~a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~  521 (571)
T PRK00293        469 EAKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------A  521 (571)
T ss_pred             HHHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------h
Confidence            34456899999999 99999999865553   45555553  5666666654311                        1


Q ss_pred             CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc--cccceee
Q psy17178        152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN--GYAGGAL  196 (384)
Q Consensus       152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~--~~~~g~~  196 (384)
                      ...++.++||+        .   ..|+++++|++|++.  ....|..
T Consensus       522 ~~~~l~~~~~v--------~---g~Pt~~~~~~~G~~i~~~r~~G~~  557 (571)
T PRK00293        522 EDVALLKHYNV--------L---GLPTILFFDAQGQEIPDARVTGFM  557 (571)
T ss_pred             hhHHHHHHcCC--------C---CCCEEEEECCCCCCcccccccCCC
Confidence            12456777887        2   245677999999883  4455654

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.76  E-value=9.6e-05  Score=57.63  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=36.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d  313 (384)
                      .++.++|+|| ++||+.|....|.+.++.+.+++ ..+.+..|+.+
T Consensus        17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   61 (104)
T cd02995          17 SDKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT   61 (104)
T ss_pred             CCCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence            3588999999 99999999999999999999876 45666666655

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.73  E-value=6.3e-05  Score=62.26  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=35.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++|||.|| ++||++|+...|.|.++.+++++. +.++-|.+|.
T Consensus        22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe   65 (142)
T PLN00410         22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE   65 (142)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC
Confidence            4679999999 999999999999999999887432 5556666664

>PTZ00062 glutaredoxin; Provisional

Probab=97.70  E-value=0.00015  Score=63.96  Aligned_cols=40  Identities=15%  Similarity=0.108  Sum_probs=32.8

Q ss_pred             CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      +.+|++|| ++|||+|....+.|.++.++|.  ++.++-|+.|
T Consensus        18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d   57 (204)
T PTZ00062         18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA   57 (204)
T ss_pred             CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence            34688888 9999999999999999999884  4777766543

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.69  E-value=9.2e-05  Score=67.47  Aligned_cols=83  Identities=19%  Similarity=0.267  Sum_probs=62.1

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      .-.+.++.+++.+++|| ..-||+|....|.++.+.++|   |+.|++||+|.... .               .||-...
T Consensus       142 ~~~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~-p---------------~fp~~~~  201 (256)
T TIGR02739       142 EKAIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLI-P---------------GLPNSRS  201 (256)
T ss_pred             HHHHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC-C---------------CCCCccC
Confidence            44567777889999999 566999999999999999876   89999999997321 1               1222211


Q ss_pred             CcchhHHhhcCcccCCCCcccceeEEEEEEEecCC
Q psy17178        152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTS  186 (384)
Q Consensus       152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G  186 (384)
                       +...++.+|+           ..+|++|+++++.
T Consensus       202 -d~gqa~~l~v-----------~~~Pal~Lv~~~t  224 (256)
T TIGR02739       202 -DSGQAQHLGV-----------KYFPALYLVNPKS  224 (256)
T ss_pred             -ChHHHHhcCC-----------ccCceEEEEECCC
Confidence             3456777888           3478999999984

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.65  E-value=0.00017  Score=56.14  Aligned_cols=44  Identities=14%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~  124 (384)
                      +++++|+|| ++||++|+...|.+.++.+.+++ ..+.+..|+.+.
T Consensus        18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   62 (104)
T cd02995          18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA   62 (104)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence            578999999 99999999999999999999876 356666676654

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.65  E-value=0.00017  Score=57.02  Aligned_cols=32  Identities=13%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ  112 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~  112 (384)
                      +++++|.|| ++||++|+...|.+.++.+++++
T Consensus        18 ~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~   49 (108)
T cd02996          18 AELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKE   49 (108)
T ss_pred             CCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhh
Confidence            578999999 99999999999999999988754

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.60  E-value=0.00038  Score=61.07  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      +++|||.|| ++||++|....|.|.++.++|.  .+.|+-|.++
T Consensus       102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad  142 (192)
T cd02988         102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIIST  142 (192)
T ss_pred             CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence            468999999 9999999999999999999884  5788877765

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.59  E-value=0.00017  Score=59.95  Aligned_cols=138  Identities=14%  Similarity=0.110  Sum_probs=83.2

Q ss_pred             cCCCCCCccEEEee----ecC---ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHH-HHhCCcEEEE-EeC
Q psy17178         52 NLSKPAPFWQGTAV----VDG---QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINTEVVA-ASV  122 (384)
Q Consensus        52 ~~G~~aP~f~l~~~----~~~---~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~-~~~~~v~vi~-Vs~  122 (384)
                      .+|++.|..+..+.    .++   +.++.+.+.+.||+.||....+. ...-...-|-+.++.+. |.....+..+ |+.
T Consensus         2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~   80 (160)
T PF09695_consen    2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL   80 (160)
T ss_pred             cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence            57888898887542    111   23456777788998777766333 22222333444444443 4444566664 467


Q ss_pred             CC-HHhHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeecc
Q psy17178        123 DS-HFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRL  200 (384)
Q Consensus       123 d~-~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~  200 (384)
                      |+ .--...|.+...+. +...+++. ++.|.+|.+.+++++...          +.+++|+|++|+|+.++.|.+.+.+
T Consensus        81 dDAi~gt~~fVrss~e~-~kk~~p~s~~vlD~~G~~~~aW~L~~~----------~SaiiVlDK~G~V~F~k~G~Ls~~E  149 (160)
T PF09695_consen   81 DDAIWGTGGFVRSSAED-SKKEFPWSQFVLDSNGVVRKAWQLQEE----------SSAIIVLDKQGKVQFVKEGALSPAE  149 (160)
T ss_pred             ccccccchHHHHHHHHH-hhhhCCCcEEEEcCCCceeccccCCCC----------CceEEEEcCCccEEEEECCCCCHHH
Confidence            65 22222233222111 01145666 679999999999999422          2457799999999999999987765


Q ss_pred             C
Q psy17178        201 G  201 (384)
Q Consensus       201 ~  201 (384)
                      .
T Consensus       150 v  150 (160)
T PF09695_consen  150 V  150 (160)
T ss_pred             H
Confidence            4

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.58  E-value=0.00029  Score=52.97  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=34.3

Q ss_pred             CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++|.|| +.||+.|....+.++++.++  ..++.++.|+.+.
T Consensus        11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~   51 (93)
T cd02947          11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE   51 (93)
T ss_pred             CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence            78899999 99999999999999998877  4567777777654

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.58  E-value=0.00025  Score=56.07  Aligned_cols=44  Identities=14%  Similarity=0.030  Sum_probs=34.4

Q ss_pred             CCCeEEEEEeeCCC--CCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .|.++||.|| +.|  ||.|....|.|.++.+++.+. +.++-|+.|.
T Consensus        26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~   71 (111)
T cd02965          26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD   71 (111)
T ss_pred             CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC
Confidence            5678899999 776  999999999999999988543 4555555554

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.56  E-value=0.00015  Score=58.81  Aligned_cols=41  Identities=7%  Similarity=0.058  Sum_probs=35.2

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |+.++|+|+ ++|||+|+.-.|.|.++.++   .++.+..|++|.
T Consensus        23 ~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~   63 (122)
T TIGR01295        23 KETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN   63 (122)
T ss_pred             CCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence            567888888 99999999999999999887   356788898874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.55  E-value=0.00042  Score=47.73  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      ++.|| ..||+.|....+.+.++  ++.+.++.++.++.+......
T Consensus         1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   43 (69)
T cd01659           1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALE   43 (69)
T ss_pred             CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHh
Confidence            46777 99999999999999998  555678999999988654333

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.54  E-value=0.00029  Score=57.41  Aligned_cols=28  Identities=18%  Similarity=-0.007  Sum_probs=21.9

Q ss_pred             ccccCCCeEEEEEEeCCCCcCchHhHHHH
Q psy17178        265 LSDYYGKYLVFFFYPLDFTFVCPTEILAF  293 (384)
Q Consensus       265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l  293 (384)
                      .+.-+||+++|+|+ +.||+.|...-...
T Consensus        18 ~Ak~~~Kpvmv~f~-sdwC~~Ck~l~k~~   45 (130)
T cd02960          18 KAKKSNKPLMVIHH-LEDCPHSQALKKAF   45 (130)
T ss_pred             HHHHCCCeEEEEEe-CCcCHhHHHHHHHh
Confidence            33447899999998 99999998765543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.00051  Score=59.72  Aligned_cols=91  Identities=15%  Similarity=0.190  Sum_probs=74.2

Q ss_pred             ccceEEcccc-CCCe--EEEEEeeC----CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCC
Q psy17178         69 QLKEIKLSDY-YGKY--LVFFFYPL----DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGL  141 (384)
Q Consensus        69 ~g~~~~l~~~-~gk~--vvl~f~~~----~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~  141 (384)
                      ...+.+|+|+ .||-  +|-.|..+    .-||.|..-+..+.-....++..++.+++||--+.+.+.++.+++      
T Consensus        60 ~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------  133 (247)
T COG4312          60 ENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------  133 (247)
T ss_pred             CCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc------
Confidence            3447999999 6663  33333323    359999999999988888888899999999999999999999876      


Q ss_pred             CccceeEEeeCcchhHHhhcCcccC
Q psy17178        142 GKLKIPLLSDLTHKISLDYGVYLSD  166 (384)
Q Consensus       142 ~~~~~p~l~D~~~~~~~~ygv~~~~  166 (384)
                       ++.||.+++.++.+-+.|++...+
T Consensus       134 -GW~f~w~Ss~~s~Fn~Df~vsf~~  157 (247)
T COG4312         134 -GWQFPWVSSTDSDFNRDFQVSFTE  157 (247)
T ss_pred             -CCcceeEeccCcccccccccccch
Confidence             899999999999999999885554

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.53  E-value=0.00019  Score=65.13  Aligned_cols=86  Identities=19%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEee
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      .-.+.++.+++.+++|| .+.||+|....|.++.+.+++   |+.|++||.|....                -.||--. 
T Consensus       135 ~~~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~----------------p~fp~~~-  193 (248)
T PRK13703        135 RQAIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVIN----------------PLLPDSR-  193 (248)
T ss_pred             HHHHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC----------------CCCCCCc-
Confidence            34466777789999999 566999999999999999876   89999999997321                1233221 


Q ss_pred             CcchhHHhhcCcccCCCCcccceeEEEEEEEecCC-Ccc
Q psy17178        152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTS-PVN  189 (384)
Q Consensus       152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G-~v~  189 (384)
                      .+...++.+|+           ..+|++|+++++. ++.
T Consensus       194 ~d~gqa~~l~v-----------~~~PAl~Lv~~~t~~~~  221 (248)
T PRK13703        194 TDQGQAQRLGV-----------KYFPALMLVDPKSGSVR  221 (248)
T ss_pred             cChhHHHhcCC-----------cccceEEEEECCCCcEE
Confidence            12334467777           3468899999985 443

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.49  E-value=0.00042  Score=69.20  Aligned_cols=73  Identities=11%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      ++++++|.|| ++||++|....|.+.++.+.+++.+  +.++.|..+.                            ...+
T Consensus        17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l   67 (462)
T TIGR01130        17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----------------------------EKDL   67 (462)
T ss_pred             cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----------------------------cHHH
Confidence            5788999999 9999999999999999999887655  5555554432                            2356


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceE-EEEE
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVI-VYWF  377 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i-~~~~  377 (384)
                      .+.|++      ..+|+.+++. +|+. +..|
T Consensus        68 ~~~~~i------~~~Pt~~~~~-~g~~~~~~~   92 (462)
T TIGR01130        68 AQKYGV------SGYPTLKIFR-NGEDSVSDY   92 (462)
T ss_pred             HHhCCC------ccccEEEEEe-CCccceeEe
Confidence            677777      5677666664 5554 3434

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.48  E-value=0.00022  Score=57.97  Aligned_cols=44  Identities=9%  Similarity=0.009  Sum_probs=28.1

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHH-H--HHhHHHHHhCCcEEEEEeCC
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~-l--~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      -.+|+++|.|+ ++||+.|+.--.. +  .++.+.+. +++.+|-|..+
T Consensus        13 ~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~   59 (124)
T cd02955          13 REDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDRE   59 (124)
T ss_pred             HcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCC
Confidence            36799999998 9999999965442 2  23444332 35555555443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.47  E-value=0.00051  Score=54.98  Aligned_cols=42  Identities=12%  Similarity=0.171  Sum_probs=33.5

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-C-cEEEEEeC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAASV  122 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~-v~vi~Vs~  122 (384)
                      +++++|.|| ++||++|+...|.+.++.+++++. + +.+..|+.
T Consensus        19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~   62 (114)
T cd02992          19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC   62 (114)
T ss_pred             CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec
Confidence            369999999 999999999999999999988642 2 44444543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.47  E-value=0.00045  Score=55.73  Aligned_cols=43  Identities=0%  Similarity=-0.232  Sum_probs=30.0

Q ss_pred             CeEEEEEeeCCCCCC--ch--HHHHHHHHhHHHH-HhCCcEEEEEeCCC
Q psy17178         81 KYLVFFFYPLDFTFV--CP--TEILAFNDRLEEF-HQINTEVVAASVDS  124 (384)
Q Consensus        81 k~vvl~f~~~~~cp~--C~--~~~~~l~~~~~~~-~~~~v~vi~Vs~d~  124 (384)
                      .++|++|| ++||++  |+  .-.|.+.++.+++ ++.++.+.-|+.|.
T Consensus        28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~   75 (120)
T cd03065          28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK   75 (120)
T ss_pred             ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC
Confidence            46777777 999988  99  5667777777765 34567766666654

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.46  E-value=0.0003  Score=54.55  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=38.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++||.|| +.||+.|....|.|.++.+++.+ ++.++-|..+.
T Consensus        17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~   59 (103)
T PF00085_consen   17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE   59 (103)
T ss_dssp             SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT
T ss_pred             CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc
Confidence            589999999 99999999999999999999876 78888887764

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.46  E-value=0.00082  Score=60.23  Aligned_cols=73  Identities=10%  Similarity=-0.027  Sum_probs=51.1

Q ss_pred             cCCCeEEEEEEe--CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        268 YYGKYLVFFFYP--LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       268 ~~Gk~vvl~F~~--a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .++.+.++.|..  ++||++|+...|.++++.+++.  ++++..+.+|..                          ...+
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~--------------------------~~~~   68 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTP--------------------------EDKE   68 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCc--------------------------ccHH
Confidence            455556666773  3999999999999999998873  456666666632                          1246


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      +++.|++      ..+|+.++++ +|+.+.
T Consensus        69 l~~~~~V------~~~Pt~~~f~-~g~~~~   91 (215)
T TIGR02187        69 EAEKYGV------ERVPTTIILE-EGKDGG   91 (215)
T ss_pred             HHHHcCC------CccCEEEEEe-CCeeeE
Confidence            6778888      6788777766 566653

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.45  E-value=0.0011  Score=48.94  Aligned_cols=27  Identities=15%  Similarity=0.086  Sum_probs=24.1

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFH  301 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~  301 (384)
                      .|.|| ++|||+|....|.++++.++++
T Consensus         2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~   28 (76)
T TIGR00412         2 KIQIY-GTGCANCQMTEKNVKKAVEELG   28 (76)
T ss_pred             EEEEE-CCCCcCHHHHHHHHHHHHHHcC
Confidence            36788 8999999999999999998874

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.44  E-value=0.0012  Score=54.88  Aligned_cols=125  Identities=8%  Similarity=-0.011  Sum_probs=73.8

Q ss_pred             CCCCCCCceeeeE----Ec---CcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHH-HHhCCcEEEEE-eCC
Q psy17178        243 VSKPAPFWQGTAV----VD---GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINTEVVAA-SVD  313 (384)
Q Consensus       243 ~g~~~P~f~l~~l----~d---~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~-~~~~~v~vv~I-s~d  313 (384)
                      +|+++|.....+-    .+   -+.++.+.+.+.||+-||... |--...-...-|.+..+.+. |.....+..+| +.|
T Consensus         3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d   81 (160)
T PF09695_consen    3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD   81 (160)
T ss_pred             CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence            5667777665430    01   123455666778998777666 33233233334545555444 55555676666 555


Q ss_pred             CH-----HhHHHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        314 SH-----FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       314 ~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.     --.+..++.-++     .+++. ++.|.++.+.++|++..     ..-..+++|++|+|++...
T Consensus        82 DAi~gt~~fVrss~e~~kk-----~~p~s~~vlD~~G~~~~aW~L~~-----~~SaiiVlDK~G~V~F~k~  142 (160)
T PF09695_consen   82 DAIWGTGGFVRSSAEDSKK-----EFPWSQFVLDSNGVVRKAWQLQE-----ESSAIIVLDKQGKVQFVKE  142 (160)
T ss_pred             cccccchHHHHHHHHHhhh-----hCCCcEEEEcCCCceeccccCCC-----CCceEEEEcCCccEEEEEC
Confidence            32     223333333322     34555 67899999999999842     2235789999999999665

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.40  E-value=0.00022  Score=70.51  Aligned_cols=45  Identities=11%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++++|.|| +.||++|+...|.|.++.+++++.++.++.|..|.
T Consensus       370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~  414 (463)
T TIGR00424       370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG  414 (463)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence            5789999999 99999999999999999999987778888888874

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=97.39  E-value=0.00086  Score=59.35  Aligned_cols=112  Identities=13%  Similarity=0.151  Sum_probs=79.3

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC---cEEEEEeCCCHHhHHH-
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN---TEVVAASVDSHFTHLA-  320 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~---v~vv~Is~d~~~~~~~-  320 (384)
                      ..+|.+++-      | .--..+..|+++||-+. -.+|..|..++..|+.|..++...|   |.++.|+--....... 
T Consensus         8 ~~~p~W~i~------~-~~pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~   79 (238)
T PF04592_consen    8 KPPPPWKIG------G-QDPMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY   79 (238)
T ss_pred             CCCCCceEC------C-chHhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence            467777752      2 44566789999999999 5579999999999999999998765   6788887643322222 


Q ss_pred             -Hh-cCccccCCCCCcceeEEe-c-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        321 -WV-NTPRKEGGLGKLKIPLLS-D-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       321 -~~-~~~~~~~~~~~~~~~~~~-D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                       .+ ++.       ...+||+- | .+..++..++--       ---.+|+|+-|++.+...
T Consensus        80 ~~l~~r~-------~~~ipVyqq~~~q~dvW~~L~G~-------kdD~~iyDRCGrL~~~i~  127 (238)
T PF04592_consen   80 WELKRRV-------SEHIPVYQQDENQPDVWELLNGS-------KDDFLIYDRCGRLTYHIP  127 (238)
T ss_pred             HHHHHhC-------CCCCceecCCccccCHHHHhCCC-------cCcEEEEeccCcEEEEec
Confidence             22 222       45699986 3 447888888652       113589999999998654

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.36  E-value=0.0015  Score=52.18  Aligned_cols=81  Identities=11%  Similarity=0.041  Sum_probs=51.2

Q ss_pred             eccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178        264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (384)
                      ..+.-++|+++|+|+ +.||+.|.......   .++.+.++ +.+.++.+.+++++                        
T Consensus        11 ~~Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e------------------------   64 (114)
T cd02958          11 QEAKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE------------------------   64 (114)
T ss_pred             HHHHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc------------------------
Confidence            334456899999999 99999997754322   12223332 23333333333221                        


Q ss_pred             cCchHHHHHhCceecCCCceeeEEEEEeC-CceEEEEEe
Q psy17178        341 DLTHKISLDYGVYLSDQGHTLDKYCLECY-KMVIVYWFE  378 (384)
Q Consensus       341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~-~G~i~~~~~  378 (384)
                        ...+++.|++      ...|+.++||+ +|++++...
T Consensus        65 --~~~~~~~~~~------~~~P~~~~i~~~~g~~l~~~~   95 (114)
T cd02958          65 --GQRFLQSYKV------DKYPHIAIIDPRTGEVLKVWS   95 (114)
T ss_pred             --HHHHHHHhCc------cCCCeEEEEeCccCcEeEEEc
Confidence              1344666777      57899999999 899998655

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.36  E-value=0.0003  Score=55.10  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=41.3

Q ss_pred             EEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .....++++++++.|| +.|||+|+..+|.+.++.+++.. .+.++.|...
T Consensus        25 ~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          25 LSLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             eehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            4444445889999999 99999999999999999999865 6788888875

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.35  E-value=0.00081  Score=53.73  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=35.2

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| +.||++|+..-|.|.++.+++.  ++.++-|..|.
T Consensus        21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~   63 (113)
T cd02989          21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK   63 (113)
T ss_pred             CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc
Confidence            3578999999 9999999999999999998774  46676666654

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.34  E-value=0.00045  Score=54.03  Aligned_cols=48  Identities=31%  Similarity=0.461  Sum_probs=40.9

Q ss_pred             eccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      ......++++++.|| +.||+.|...+|.+.++.+++.. .+.++.++..
T Consensus        26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            334445889999999 99999999999999999999865 6788999885

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.34  E-value=0.00067  Score=52.75  Aligned_cols=42  Identities=14%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++++|.|| ++||+.|+...|.+.++.+++.. .+.+..+..+
T Consensus        18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~   59 (103)
T cd03001          18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD   59 (103)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc
Confidence            457899999 99999999999999999988753 4666666554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.32  E-value=0.00045  Score=55.15  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++++|.|| +.||++|+...|.+.++.+++.  ++.++-|..+
T Consensus        24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~   64 (113)
T cd02957          24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE   64 (113)
T ss_pred             CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch
Confidence            479999999 9999999999999999998874  4555555444

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.31  E-value=0.00082  Score=53.69  Aligned_cols=42  Identities=14%  Similarity=-0.001  Sum_probs=32.0

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++.++|.|| ++|||+|+...|.+.++.+++  ..+++.-|..|.
T Consensus        22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~   63 (113)
T cd02975          22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE   63 (113)
T ss_pred             CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc
Confidence            346777777 999999999999999988765  346666666653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.30  E-value=0.0016  Score=49.59  Aligned_cols=70  Identities=11%  Similarity=-0.049  Sum_probs=48.9

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .++++.+-+..|+ +.||+.|+...+.++++.+++  .++.+.-+..|..                            ..
T Consensus         8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~~~----------------------------~e   56 (89)
T cd03026           8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGALF----------------------------QD   56 (89)
T ss_pred             HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhHhC----------------------------HH
Confidence            3566776777777 999999999989888888755  2456655555421                            34


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      +++.||+      ...|+++ +  ||++++
T Consensus        57 ~a~~~~V------~~vPt~v-i--dG~~~~   77 (89)
T cd03026          57 EVEERGI------MSVPAIF-L--NGELFG   77 (89)
T ss_pred             HHHHcCC------ccCCEEE-E--CCEEEE
Confidence            5667888      5777765 4  688776

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.20  E-value=0.00057  Score=55.70  Aligned_cols=25  Identities=20%  Similarity=-0.002  Sum_probs=20.5

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHH
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAF  103 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l  103 (384)
                      -.||+++|+|+ ++||++|+.--...
T Consensus        21 ~~~Kpvmv~f~-sdwC~~Ck~l~k~~   45 (130)
T cd02960          21 KSNKPLMVIHH-LEDCPHSQALKKAF   45 (130)
T ss_pred             HCCCeEEEEEe-CCcCHhHHHHHHHh
Confidence            36899999988 99999999765543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.00062  Score=62.42  Aligned_cols=44  Identities=9%  Similarity=0.148  Sum_probs=37.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +-+||||+|| +.||++|+.-+|.|.++..+|+. .+.+.-|+.|.
T Consensus        42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~   85 (304)
T COG3118          42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDA   85 (304)
T ss_pred             cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCc
Confidence            4579999999 99999999999999999999864 36666676665

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.0026  Score=55.43  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             cceeeecccc-CCC--eEEEEEEeCC----CCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCC
Q psy17178        259 QLKEIKLSDY-YGK--YLVFFFYPLD----FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGL  331 (384)
Q Consensus       259 ~g~~~~l~d~-~Gk--~vvl~F~~a~----~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~  331 (384)
                      +| +.+|+|+ .||  .+|-.|+++.    -||.|..-+-.+.-....+...+|.+++||.-+.+++..+.++.      
T Consensus        61 ~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------  133 (247)
T COG4312          61 NG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------  133 (247)
T ss_pred             Cc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc------
Confidence            44 7999996 665  4455555444    48899888888888888888889999999999999999999988      


Q ss_pred             CCcceeEEecCchHHHHHhCce
Q psy17178        332 GKLKIPLLSDLTHKISLDYGVY  353 (384)
Q Consensus       332 ~~~~~~~~~D~~~~~~~~~gv~  353 (384)
                       +++||.+++.++.+-+.|++.
T Consensus       134 -GW~f~w~Ss~~s~Fn~Df~vs  154 (247)
T COG4312         134 -GWQFPWVSSTDSDFNRDFQVS  154 (247)
T ss_pred             -CCcceeEeccCcccccccccc
Confidence             999999999999888999773

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=97.15  E-value=0.00098  Score=59.01  Aligned_cols=111  Identities=13%  Similarity=0.195  Sum_probs=74.5

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC---cEEEEEeCCCHHhHHhh
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN---TEVVAASVDSHFTHLAW  131 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~---v~vi~Vs~d~~~~~~~~  131 (384)
                      .++|.+++      +| .-...+.+|+++||.+-.+ +|..|..++..|..+..+++..|   +.++.|+.-...+...+
T Consensus         8 ~~~p~W~i------~~-~~pm~~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~   79 (238)
T PF04592_consen    8 KPPPPWKI------GG-QDPMLNSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY   79 (238)
T ss_pred             CCCCCceE------CC-chHhhhcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence            56788885      22 4556678999999999955 79999999999999999998765   46667775443222221


Q ss_pred             ccCccccCCCCccceeEEe-e-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        132 VNTPRKEGGLGKLKIPLLS-D-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~-D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                      .+ ++++.   ...||++. | ...++...++--.+            -+||+|+-|++.
T Consensus        80 ~~-l~~r~---~~~ipVyqq~~~q~dvW~~L~G~kd------------D~~iyDRCGrL~  123 (238)
T PF04592_consen   80 WE-LKRRV---SEHIPVYQQDENQPDVWELLNGSKD------------DFLIYDRCGRLT  123 (238)
T ss_pred             HH-HHHhC---CCCCceecCCccccCHHHHhCCCcC------------cEEEEeccCcEE
Confidence            11 10110   33599986 3 34667666665222            257999999986

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>KOG0191|consensus

Probab=97.14  E-value=0.0025  Score=62.32  Aligned_cols=42  Identities=12%  Similarity=0.108  Sum_probs=34.5

Q ss_pred             CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCC
Q psy17178        271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD  313 (384)
Q Consensus       271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d  313 (384)
                      +..++.|+ +.||++|+...|...++.+.++. .++.+..+..+
T Consensus       163 ~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~  205 (383)
T KOG0191|consen  163 ADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT  205 (383)
T ss_pred             cceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence            34567776 99999999999999999998874 66777777766

>PLN02309 5'-adenylylsulfate reductase

Probab=97.11  E-value=0.00071  Score=66.96  Aligned_cols=44  Identities=11%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ++|+++|.|| +.||++|+...|.+.++.++++..++.+..|+.|
T Consensus       364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d  407 (457)
T PLN02309        364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD  407 (457)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            5789999999 9999999999999999999998778888888877

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.04  E-value=0.0033  Score=46.94  Aligned_cols=50  Identities=20%  Similarity=0.153  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      +.-.||+++|+|+ +.||+.|...-..+   .++.+.+. +++..+-|..++.+.
T Consensus        13 A~~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~   65 (82)
T PF13899_consen   13 AKKEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDP   65 (82)
T ss_dssp             HHHHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHH
T ss_pred             HHHcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCCh
Confidence            3346899999998 99999998876655   22333233 557777777765543

...

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=97.01  E-value=0.0043  Score=56.66  Aligned_cols=121  Identities=16%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             CCCCCceeeeEEcCcceeeeccc-cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-C--CcEEEEEeCCCHHhHHH
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-I--NTEVVAASVDSHFTHLA  320 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d-~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~--~v~vv~Is~d~~~~~~~  320 (384)
                      ...|++...+|   +|+.+++.+ ++||+.||..++..|...|...--.  ...++|.. .  .+++|-|+.-..- ++.
T Consensus        99 lyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~-~k~  172 (252)
T PF05176_consen   99 LYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENW-LKS  172 (252)
T ss_pred             CcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHH-HHH
Confidence            56899999987   888888877 5999998888878887766554322  33344432 3  6899999975321 111


Q ss_pred             H-----hcCccccCCCC-CcceeEEecC--chHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        321 W-----VNTPRKEGGLG-KLKIPLLSDL--THKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       321 ~-----~~~~~~~~~~~-~~~~~~~~D~--~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      +     ...+++.-... +..+-+..+.  ...+-+++|+...    .+..+||||++|+||+
T Consensus       173 ~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~----~~GYvyLVD~~grIRW  231 (252)
T PF05176_consen  173 WLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS----YVGYVYLVDPNGRIRW  231 (252)
T ss_pred             HHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC----CcCeEEEECCCCeEEe
Confidence            1     12222111111 2334344433  4677888998543    3457899999999998

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=96.97  E-value=0.003  Score=47.16  Aligned_cols=50  Identities=20%  Similarity=0.143  Sum_probs=35.5

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      -.||+++|.|+ +.||+.|+..-..+   .++.+.+. +++..+-|..+..+...
T Consensus        15 ~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~   67 (82)
T PF13899_consen   15 KEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA   67 (82)
T ss_dssp             HHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH
T ss_pred             HcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH
Confidence            36899999998 99999999876555   23333233 57888888887755443

...

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.94  E-value=0.0019  Score=50.22  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=36.9

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      |+++++.|+ +.||+.|....+.+.++.++++++ +.++.|+.|.
T Consensus        12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~   54 (103)
T cd02982          12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD   54 (103)
T ss_pred             CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence            788999998 999999999999999999999743 7777776664

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.93  E-value=0.0021  Score=64.13  Aligned_cols=44  Identities=11%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-C-CcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-I-NTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~-~v~vv~Is~d  313 (384)
                      .++.++|+|| ++||++|....|.++++.+.+++ . ++.++.|+.+
T Consensus       363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~  408 (462)
T TIGR01130       363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT  408 (462)
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence            4788999999 99999999999999999999986 2 6778777765

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.92  E-value=0.0013  Score=53.89  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=45.8

Q ss_pred             ccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178        265 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  344 (384)
Q Consensus       265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  344 (384)
                      +..+..+..++.|. .+|||-|...+|.|.++.+...  ++.+=-|+.|..   .+.++++        +          
T Consensus        36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~---~el~~~~--------l----------   91 (129)
T PF14595_consen   36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN---KELMDQY--------L----------   91 (129)
T ss_dssp             HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH---HHHTTTT--------T----------
T ss_pred             HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC---hhHHHHH--------H----------
Confidence            34445567777777 9999999999999999999753  455555555532   2333322        0          


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                          ..|.      ..+|+.+++|++|+.+.++..
T Consensus        92 ----t~g~------~~IP~~I~~d~~~~~lg~wge  116 (129)
T PF14595_consen   92 ----TNGG------RSIPTFIFLDKDGKELGRWGE  116 (129)
T ss_dssp             ----T-SS--------SSEEEEE-TT--EEEEEES
T ss_pred             ----hCCC------eecCEEEEEcCCCCEeEEEcC
Confidence                0222      578999999999999887753

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=96.90  E-value=0.0022  Score=51.23  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             HHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcC
Q psy17178        103 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV  162 (384)
Q Consensus       103 l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv  162 (384)
                      |.+..+++++.|+.+++|+..+++..++|++..       ..++|++.|++.++.+++|+
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~   54 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGL   54 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCC
Confidence            566778888899999999999987799999753       78999999999999999998

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=96.84  E-value=0.0024  Score=55.17  Aligned_cols=42  Identities=10%  Similarity=0.026  Sum_probs=35.0

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +++|||.|| +.||++|+...|.|.++.+++.  ++.++-|+.+.
T Consensus        83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~  124 (175)
T cd02987          83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA  124 (175)
T ss_pred             CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc
Confidence            358999999 9999999999999999998874  47777776664

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=96.83  E-value=0.0031  Score=46.71  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=31.0

Q ss_pred             EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         83 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        83 vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .|..|| +.|||+|+...+.+.++.++++. .+.++-|+.+
T Consensus         2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~   40 (82)
T TIGR00411         2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM   40 (82)
T ss_pred             EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence            356777 99999999999999999988753 3666667654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=96.82  E-value=0.0021  Score=58.70  Aligned_cols=135  Identities=12%  Similarity=0.084  Sum_probs=82.0

Q ss_pred             CCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hC--CcEEEEEeCCCHHh-
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QI--NTEVVAASVDSHFT-  127 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~--~v~vi~Vs~d~~~~-  127 (384)
                      ..-..|+|...++   +|+.+++.+. +||+.||..+...|--.|....-.  ...++|. ..  .++++-|+.-+.-- 
T Consensus        97 kAlyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~k  171 (252)
T PF05176_consen   97 KALYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWLK  171 (252)
T ss_pred             hCCcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHHH
Confidence            4456799999888   8888887766 899888877756665555543222  2333443 23  68999999865211 


Q ss_pred             ---HHhhccCccccCCCC-ccceeEEeeC--cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccC
Q psy17178        128 ---HLAWVNTPRKEGGLG-KLKIPLLSDL--THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLG  201 (384)
Q Consensus       128 ---~~~~~~~~~~~~~~~-~~~~p~l~D~--~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~  201 (384)
                         ..-+...+++..... .-.|-+..+.  ..++-+++|+....         +..+||||.+|+||+.-.|.-.+.+.
T Consensus       172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~---------~GYvyLVD~~grIRWagsG~At~~E~  242 (252)
T PF05176_consen  172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY---------VGYVYLVDPNGRIRWAGSGPATPEEL  242 (252)
T ss_pred             HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC---------cCeEEEECCCCeEEeCccCCCCHHHH
Confidence               111222221111100 1123333333  45777888885544         34689999999999998887665543

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=96.78  E-value=0.0037  Score=49.89  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHH-H--HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  152 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~-l--~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  152 (384)
                      +.-++|+++|+|+ +.||+.|..-... |  .++.+.+++ ++..+.+..++++ .                        
T Consensus        13 Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e-~------------------------   65 (114)
T cd02958          13 AKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE-G------------------------   65 (114)
T ss_pred             HHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-H------------------------
Confidence            3446799999999 9999999875432 2  223333322 3444444444322 1                        


Q ss_pred             cchhHHhhcCcccCCCCcccceeEEEEEEEec-CCCcccccceeeee
Q psy17178        153 THKISLDYGVYLSDQGPVRGSLLSTAIFVYAL-TSPVNGYAGGALYS  198 (384)
Q Consensus       153 ~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~-~G~v~~~~~g~~~p  198 (384)
                       .++++.|++           ...|+++++|+ +|++.....|...+
T Consensus        66 -~~~~~~~~~-----------~~~P~~~~i~~~~g~~l~~~~G~~~~  100 (114)
T cd02958          66 -QRFLQSYKV-----------DKYPHIAIIDPRTGEVLKVWSGNITP  100 (114)
T ss_pred             -HHHHHHhCc-----------cCCCeEEEEeCccCcEeEEEcCCCCH
Confidence             224555555           22456788999 89888777776643

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PHA02125 thioredoxin-like protein

Probab=96.77  E-value=0.009  Score=43.78  Aligned_cols=22  Identities=9%  Similarity=0.282  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDR  296 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l  296 (384)
                      +++|| ++||++|+...|.|.++
T Consensus         2 iv~f~-a~wC~~Ck~~~~~l~~~   23 (75)
T PHA02125          2 IYLFG-AEWCANCKMVKPMLANV   23 (75)
T ss_pred             EEEEE-CCCCHhHHHHHHHHHHH
Confidence            67888 99999999988887543

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=96.66  E-value=0.0058  Score=41.74  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  130 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~  130 (384)
                      ++.|| ..||+.|....+.+.++  ++...++.++.++.+.......
T Consensus         1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   44 (69)
T cd01659           1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEK   44 (69)
T ss_pred             CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhh
Confidence            46777 88999999999999998  4556789999999887554433

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.65  E-value=0.0091  Score=42.46  Aligned_cols=38  Identities=16%  Similarity=0.040  Sum_probs=28.4

Q ss_pred             EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      -+..|+ ++|||.|....+.|+++.+++  .++.+.-+.+|
T Consensus         2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~   39 (67)
T cd02973           2 NIEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA   39 (67)
T ss_pred             EEEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence            356677 999999999999998886643  45666666654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.64  E-value=0.0048  Score=47.91  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=36.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .|+++++.|+ +.||+.|....+.+.++.+++++ .+.++-|+.|.
T Consensus        11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~   54 (103)
T cd02982          11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD   54 (103)
T ss_pred             cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh
Confidence            3789999999 99999999999999999999974 36676666654

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=96.56  E-value=0.0057  Score=45.02  Aligned_cols=27  Identities=15%  Similarity=0.086  Sum_probs=23.8

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFH  111 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~  111 (384)
                      .|.|| ++|||+|....|.+.++.+++.
T Consensus         2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~   28 (76)
T TIGR00412         2 KIQIY-GTGCANCQMTEKNVKKAVEELG   28 (76)
T ss_pred             EEEEE-CCCCcCHHHHHHHHHHHHHHcC
Confidence            37788 8999999999999999998864

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>smart00594 UAS UAS domain

Probab=96.51  E-value=0.015  Score=47.04  Aligned_cols=74  Identities=8%  Similarity=-0.062  Sum_probs=47.3

Q ss_pred             eccccCCCeEEEEEEeCCCCcCchHhHHHHH---HHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178        264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~---~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (384)
                      ..+.-.+|.++|+|+ +.||+.|.......-   ++.+.++ +++.++.+++++++                        
T Consensus        21 ~~Ak~~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~e------------------------   74 (122)
T smart00594       21 QEASRQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSE------------------------   74 (122)
T ss_pred             HHHHhhcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChh------------------------
Confidence            334446899999999 999999987554321   1222332 34444444444332                        


Q ss_pred             cCchHHHHHhCceecCCCceeeEEEEEeCCc
Q psy17178        341 DLTHKISLDYGVYLSDQGHTLDKYCLECYKM  371 (384)
Q Consensus       341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G  371 (384)
                        ..++++.|++      ...|+.+++|++|
T Consensus        75 --g~~l~~~~~~------~~~P~~~~l~~~~   97 (122)
T smart00594       75 --GQRVSQFYKL------DSFPYVAIVDPRT   97 (122)
T ss_pred             --HHHHHHhcCc------CCCCEEEEEecCC
Confidence              1456777887      5789999999998

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=96.43  E-value=0.0055  Score=53.80  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=35.0

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++|||.|| ++||++|+...|.|.++.++|.  .+.++-|..+
T Consensus       102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad  142 (192)
T cd02988         102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIIST  142 (192)
T ss_pred             CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence            468999999 9999999999999999999884  4777777665

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908|consensus

Probab=96.42  E-value=0.0037  Score=55.71  Aligned_cols=47  Identities=23%  Similarity=0.272  Sum_probs=39.5

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |+..-||.++|.|. ++||.+|....|.+.++.++|  .+..++=|.+|.
T Consensus        16 ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd~   62 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVDE   62 (288)
T ss_pred             hhccCceEEEEEEE-ecccchHHhhhhHHHHhhhhC--cccEEEEEeHHH
Confidence            44445689999999 999999999999999999999  467777777765

>KOG4498|consensus

Probab=96.40  E-value=0.023  Score=48.62  Aligned_cols=118  Identities=9%  Similarity=0.061  Sum_probs=81.9

Q ss_pred             cCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcc
Q psy17178        257 DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK  335 (384)
Q Consensus       257 d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~  335 (384)
                      +..|+.+...++ +.+..+|.|-+-.-|-.|+.+...|..+.+-+.+.|+..++|-...-.....+.++-       ...
T Consensus        36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~  108 (197)
T KOG4498|consen   36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS  108 (197)
T ss_pred             hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence            558999999997 556678899888889999999999999977778899999999865444344444432       334


Q ss_pred             eeEEecCchHHHHHhCcee----------------------cC----CCceeeEEEEEeCCceEEEEEecCC
Q psy17178        336 IPLLSDLTHKISLDYGVYL----------------------SD----QGHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       336 ~~~~~D~~~~~~~~~gv~~----------------------~~----~~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      -.++.|++..+.+.++...                      ..    .+...-..+++.+.|+|.+++...+
T Consensus       109 gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~  180 (197)
T KOG4498|consen  109 GEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKE  180 (197)
T ss_pred             eeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCC
Confidence            4677777754443332211                      11    0123445789998889999887654

>KOG0908|consensus

Probab=96.29  E-value=0.0044  Score=55.21  Aligned_cols=42  Identities=21%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      -||.++|.|. ++||.+|....|.++.+..+|  .+..++=|.+|
T Consensus        20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd   61 (288)
T KOG0908|consen   20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVD   61 (288)
T ss_pred             CceEEEEEEE-ecccchHHhhhhHHHHhhhhC--cccEEEEEeHH
Confidence            4689999999 999999999999999999999  45556666554

>PTZ00062 glutaredoxin; Provisional

Probab=96.12  E-value=0.0097  Score=52.60  Aligned_cols=39  Identities=15%  Similarity=0.113  Sum_probs=31.4

Q ss_pred             CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      +.+|++|| ++|||.|+...+-|.++.++|.  ++.++-|..
T Consensus        18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~   56 (204)
T PTZ00062         18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNL   56 (204)
T ss_pred             CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEcc
Confidence            34778888 9999999999999999999884  466666643

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.00  E-value=0.031  Score=39.67  Aligned_cols=38  Identities=16%  Similarity=0.068  Sum_probs=28.0

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |..|+ +.|||+|....+.|+++.+..  .++++.-|..|.
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~   40 (67)
T cd02973           3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAE   40 (67)
T ss_pred             EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEccc
Confidence            56677 999999999888888886543  356666666553

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=95.56  E-value=0.037  Score=42.04  Aligned_cols=45  Identities=16%  Similarity=-0.026  Sum_probs=30.3

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .++++...+..|+ +.||++|+...+.+.++.+++.  ++.+..+..|
T Consensus         8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~   52 (89)
T cd03026           8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA   52 (89)
T ss_pred             HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence            3555555555555 9999999998888888776542  4555555444

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=95.47  E-value=0.0081  Score=49.12  Aligned_cols=47  Identities=17%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +..+..+..++.|. .+|||-|..++|.|.++.+...  ++++=.++.|.
T Consensus        36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~   82 (129)
T PF14595_consen   36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE   82 (129)
T ss_dssp             HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH
T ss_pred             HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC
Confidence            33445556777777 9999999999999999998743  56655565554

>KOG4498|consensus

Probab=95.42  E-value=0.037  Score=47.35  Aligned_cols=86  Identities=9%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             ccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcccee
Q psy17178         69 QLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  147 (384)
Q Consensus        69 ~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  147 (384)
                      .|+.+...++ +.+..+|.|.+-.-|-.|+.+...|.++..-+++.|+.+++|-..+....+.|.+.-       ...=.
T Consensus        38 rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ge  110 (197)
T KOG4498|consen   38 RGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFSGE  110 (197)
T ss_pred             cCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Cccee
Confidence            7899999999 556788999989999999999999999977778899999999876654444444421       23346


Q ss_pred             EEeeCcchhHHhhc
Q psy17178        148 LLSDLTHKISLDYG  161 (384)
Q Consensus       148 ~l~D~~~~~~~~yg  161 (384)
                      ++.|++..+.+.++
T Consensus       111 vylD~~~~~Y~~le  124 (197)
T KOG4498|consen  111 VYLDPHRGFYKPLE  124 (197)
T ss_pred             EEEcCccceechhh
Confidence            88888766554444

>PHA02125 thioredoxin-like protein

Probab=95.40  E-value=0.047  Score=39.92  Aligned_cols=21  Identities=10%  Similarity=0.327  Sum_probs=17.9

Q ss_pred             EEEEeeCCCCCCchHHHHHHHH
Q psy17178         84 VFFFYPLDFTFVCPTEILAFND  105 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~  105 (384)
                      ++.|+ ++||++|+.-.|.|.+
T Consensus         2 iv~f~-a~wC~~Ck~~~~~l~~   22 (75)
T PHA02125          2 IYLFG-AEWCANCKMVKPMLAN   22 (75)
T ss_pred             EEEEE-CCCCHhHHHHHHHHHH
Confidence            67788 9999999998888754

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=94.92  E-value=0.053  Score=39.37  Aligned_cols=33  Identities=3%  Similarity=0.113  Sum_probs=23.3

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +..|| ++|||.|++..+.|.++       ++..-.|+++.
T Consensus         2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~   34 (77)
T TIGR02200         2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEE   34 (77)
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcC
Confidence            45677 99999999987766553       45555566654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG1278|consensus

Probab=94.87  E-value=0.0012  Score=64.95  Aligned_cols=73  Identities=37%  Similarity=0.701  Sum_probs=66.2

Q ss_pred             cccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhhccccCCC
Q psy17178        170 VRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPF  242 (384)
Q Consensus       170 ~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (384)
                      .||..+|.++++.-=-|.+.+|+++++|+.+.|+.||++.++++.+.|+++++++++++++.+...++++.|.
T Consensus       360 ~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF  432 (628)
T KOG1278|consen  360 SRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPF  432 (628)
T ss_pred             ccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccH
Confidence            5777777777777778999999999999999999999999999999999999999999999999998888774

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=94.65  E-value=0.13  Score=47.10  Aligned_cols=31  Identities=10%  Similarity=0.005  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHH
Q psy17178        267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLE  298 (384)
Q Consensus       267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~  298 (384)
                      .-.+|.+|+.|. -..||.|++...++.++.+
T Consensus       114 ~~~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~  144 (251)
T PRK11657        114 KADAPRIVYVFA-DPNCPYCKQFWQQARPWVD  144 (251)
T ss_pred             CCCCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence            335788887887 8899999999988877654

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=94.64  E-value=0.083  Score=38.28  Aligned_cols=34  Identities=3%  Similarity=0.114  Sum_probs=23.4

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  315 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~  315 (384)
                      +..|| ++|||.|+...+.|.++       ++.+-.++++..
T Consensus         2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~   35 (77)
T TIGR02200         2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEED   35 (77)
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcCC
Confidence            45677 99999999988776544       455555666543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=94.49  E-value=0.13  Score=36.67  Aligned_cols=54  Identities=7%  Similarity=0.056  Sum_probs=32.8

Q ss_pred             EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeC
Q psy17178         85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDL  152 (384)
Q Consensus        85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~  152 (384)
                      ..|+ ++|||.|+...+.|.+       .++.+.-++.+. ++..+++.+..    +  ....|.+.+.
T Consensus         3 ~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~----~--~~~vP~~~~~   57 (74)
T TIGR02196         3 KVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVL----G--QRGVPVIVIG   57 (74)
T ss_pred             EEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHh----C--CCcccEEEEC
Confidence            4455 9999999987766644       577777787765 33333444322    1  2346666553

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>smart00594 UAS UAS domain

Probab=94.37  E-value=0.17  Score=40.76  Aligned_cols=47  Identities=9%  Similarity=-0.097  Sum_probs=29.4

Q ss_pred             ccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCH
Q psy17178         77 DYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSH  125 (384)
Q Consensus        77 ~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~  125 (384)
                      .-.+|+++|+|+ +.||+.|..-....   .++.+.++ .++.++.+.+++.
T Consensus        24 k~~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~   73 (122)
T smart00594       24 SRQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTS   73 (122)
T ss_pred             HhhcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCCh
Confidence            335789999999 99999999765432   22333332 3555555555443

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.98  E-value=0.14  Score=42.61  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=61.0

Q ss_pred             cCCCeEEEEEeeCCCCCCchHH---HHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTE---ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~---~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      -.+|+.++.|- ..-|++|..-   +-.-.++.+-++. .+.++-+.......+. |..         +..  ...-...
T Consensus        40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~-f~~---------g~k--ee~~s~~  105 (182)
T COG2143          40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVL-FKV---------GDK--EEKMSTE  105 (182)
T ss_pred             ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceE-eec---------Cce--eeeecHH
Confidence            35788888888 8889999864   3333455555543 3555655544322221 211         111  2222356


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                      ++++.|+|           ..+|..++.|.+|+-.....|++.|
T Consensus       106 ELa~kf~v-----------rstPtfvFfdk~Gk~Il~lPGY~pp  138 (182)
T COG2143         106 ELAQKFAV-----------RSTPTFVFFDKTGKTILELPGYMPP  138 (182)
T ss_pred             HHHHHhcc-----------ccCceEEEEcCCCCEEEecCCCCCH
Confidence            89999999           3466788999999998888888854

>KOG0190|consensus

Probab=93.70  E-value=0.075  Score=52.81  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  303 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~  303 (384)
                      .+|=|+|-|+ |.||++|..-.|.+++|.++|++.
T Consensus       383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~  416 (493)
T KOG0190|consen  383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD  416 (493)
T ss_pred             cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence            4788999999 999999999999999999999874

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=93.60  E-value=0.27  Score=34.89  Aligned_cols=32  Identities=6%  Similarity=0.046  Sum_probs=23.5

Q ss_pred             EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      ..|+ ++|||.|....+.|.+       .++.+.-++++.
T Consensus         3 ~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   34 (74)
T TIGR02196         3 KVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK   34 (74)
T ss_pred             EEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence            3455 9999999987766543       467888787764

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=93.47  E-value=0.072  Score=53.61  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=29.0

Q ss_pred             ccCCCeEEEEEeeCCCCCCchHHHH-HHHHhHHHHHhCCcEEE
Q psy17178         77 DYYGKYLVFFFYPLDFTFVCPTEIL-AFNDRLEEFHQINTEVV  118 (384)
Q Consensus        77 ~~~gk~vvl~f~~~~~cp~C~~~~~-~l~~~~~~~~~~~v~vi  118 (384)
                      +-++|||+|+|+ ++||-.|+..-+ .+.+-...++-.|+..+
T Consensus       471 ~~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlL  512 (569)
T COG4232         471 EAKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLL  512 (569)
T ss_pred             hCCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEE
Confidence            335579999999 999999986433 44555555555676655

>KOG0190|consensus

Probab=93.01  E-value=0.11  Score=51.65  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  113 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~  113 (384)
                      .+|-|+|-|+ +.||+.|..-.|.++++.+.|++.
T Consensus       383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~  416 (493)
T KOG0190|consen  383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD  416 (493)
T ss_pred             cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence            4688999999 999999999999999999999874

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=92.92  E-value=0.28  Score=39.39  Aligned_cols=94  Identities=11%  Similarity=0.019  Sum_probs=57.6

Q ss_pred             eccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        264 KLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       264 ~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      .|+++++| -+||.|-+...-+.-..++..|++....+.++++.++.+.-+.....                ..++-.+.
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~----------------~~~~~~~~   65 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSP----------------GKPLSPED   65 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccc----------------cCcCCHHH
Confidence            35667765 34556554444555566777777777778888888888854432110                01111122


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ...+.+.|++.     ...-+.+||++||.+..++.
T Consensus        66 ~~~lr~~l~~~-----~~~f~~vLiGKDG~vK~r~~   96 (118)
T PF13778_consen   66 IQALRKRLRIP-----PGGFTVVLIGKDGGVKLRWP   96 (118)
T ss_pred             HHHHHHHhCCC-----CCceEEEEEeCCCcEEEecC
Confidence            25777888873     12346799999999998755

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=92.73  E-value=0.23  Score=39.86  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCCeEEEEEeeC------CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH
Q psy17178         79 YGKYLVFFFYPL------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  125 (384)
Q Consensus        79 ~gk~vvl~f~~~------~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~  125 (384)
                      .|++++|.|..+      +|||.|+.-.|.+.+..+.. ..+..+|-|.+.+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r   69 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDR   69 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCH
Confidence            567888888833      59999999999999888773 34778888877653

; PDB: 1V9W_A 1WOU_A.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=92.41  E-value=0.7  Score=36.94  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=49.0

Q ss_pred             eccccCCCeEEEEEEeCC----CCcCchHhH--HHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCccee
Q psy17178        264 KLSDYYGKYLVFFFYPLD----FTFVCPTEI--LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  337 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~----~c~~C~~~~--~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~  337 (384)
                      ..+.-.+|.++|+++ +.    ||..|+..+  |++.+..+    .++-+++.++++++                     
T Consensus        11 ~~ak~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e---------------------   64 (116)
T cd02991          11 NDAKQELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE---------------------   64 (116)
T ss_pred             HHHHhhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH---------------------
Confidence            344457899999999 77    788886543  33333332    34556666666543                     


Q ss_pred             EEecCchHHHHHhCceecCCCceeeEEEEE---eCCceEEEEEe
Q psy17178        338 LLSDLTHKISLDYGVYLSDQGHTLDKYCLE---CYKMVIVYWFE  378 (384)
Q Consensus       338 ~~~D~~~~~~~~~gv~~~~~~~~~p~~~lI---d~~G~i~~~~~  378 (384)
                           ..++++.+++      ...|...+|   +.+.+|+....
T Consensus        65 -----g~~la~~l~~------~~~P~~~~l~~~~~~~~vv~~i~   97 (116)
T cd02991          65 -----GYRVSQALRE------RTYPFLAMIMLKDNRMTIVGRLE   97 (116)
T ss_pred             -----HHHHHHHhCC------CCCCEEEEEEecCCceEEEEEEe
Confidence                 1466777777      577888888   55666666443

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=92.20  E-value=0.36  Score=38.74  Aligned_cols=46  Identities=17%  Similarity=0.212  Sum_probs=33.1

Q ss_pred             CCCeEEEEEEe------CCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH
Q psy17178        269 YGKYLVFFFYP------LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  315 (384)
Q Consensus       269 ~Gk~vvl~F~~------a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~  315 (384)
                      .|+.+.|.|.-      -+|||.|....|.+++...... .+..+|-+.+.+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r   69 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR   69 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH
Confidence            56788888873      2599999999999999988743 4678888888753

; PDB: 1V9W_A 1WOU_A.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=91.86  E-value=0.24  Score=50.02  Aligned_cols=42  Identities=19%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHH-HHHHHHHHHhCCcEEEEEe
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILA-FNDRLEEFHQINTEVVAAS  311 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~-l~~l~~~~~~~~v~vv~Is  311 (384)
                      ++|+|+|+|+ |.||-.|+..-+. +++.+..++-.++..+=+.
T Consensus       473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaD  515 (569)
T COG4232         473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQAD  515 (569)
T ss_pred             CCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEee
Confidence            4569999999 9999999754333 3344444554565554443

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=0.7  Score=38.52  Aligned_cols=92  Identities=11%  Similarity=0.011  Sum_probs=57.2

Q ss_pred             ccCCCeEEEEEEeCCCCcCchHhH---HHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178        267 DYYGKYLVFFFYPLDFTFVCPTEI---LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  343 (384)
Q Consensus       267 d~~Gk~vvl~F~~a~~c~~C~~~~---~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~  343 (384)
                      ...+|++++.|- ...|+.|...-   -.-.++++-+. ..+.++-+.......+. |..         +..  ...-..
T Consensus        39 ~~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~skpv~-f~~---------g~k--ee~~s~  104 (182)
T COG2143          39 SPNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISYSKPVL-FKV---------GDK--EEKMST  104 (182)
T ss_pred             CccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEeccCcceE-eec---------Cce--eeeecH
Confidence            347899999998 88899997543   33334444443 33556666543321110 111         111  222234


Q ss_pred             hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .++++.|++      ..+|+.++.|++|+-+..-+
T Consensus       105 ~ELa~kf~v------rstPtfvFfdk~Gk~Il~lP  133 (182)
T COG2143         105 EELAQKFAV------RSTPTFVFFDKTGKTILELP  133 (182)
T ss_pred             HHHHHHhcc------ccCceEEEEcCCCCEEEecC
Confidence            689999999      78999999999999887443

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=91.73  E-value=0.4  Score=40.63  Aligned_cols=29  Identities=7%  Similarity=0.072  Sum_probs=19.3

Q ss_pred             eeeeccccCCCeEEEEEEeCCCCcCchHhH
Q psy17178        261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEI  290 (384)
Q Consensus       261 ~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~  290 (384)
                      +.+..+.-.+|+++|++. .+||.-|..+.
T Consensus        28 ea~~~Ak~e~KpIfl~ig-~~~C~wChvM~   56 (163)
T PF03190_consen   28 EALEKAKKENKPIFLSIG-YSWCHWCHVME   56 (163)
T ss_dssp             HHHHHHHHHT--EEEEEE--TT-HHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEEE-ecCCcchhhhc
Confidence            445666667899999999 99999997654

; PDB: 3IRA_A.

>KOG1277|consensus

Probab=91.48  E-value=0.022  Score=55.14  Aligned_cols=73  Identities=58%  Similarity=1.006  Sum_probs=63.3

Q ss_pred             cccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhhccccCCC
Q psy17178        170 VRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPF  242 (384)
Q Consensus       170 ~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (384)
                      .||...+.++++-....-|.+|..|-+|.+..|++|.+++++.+.++|..++....+++.....+.+..+.|.
T Consensus       324 ~rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPf  396 (593)
T KOG1277|consen  324 ERGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPF  396 (593)
T ss_pred             cchHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCc
Confidence            3777777777788888889999999999999999999999999999999999888888888888887777653

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=91.41  E-value=0.51  Score=37.71  Aligned_cols=30  Identities=20%  Similarity=0.050  Sum_probs=23.2

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ  112 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~  112 (384)
                      .+.++|-|+ ++| |.|.+ .|.+.++..++..
T Consensus        18 ~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~   47 (116)
T cd03007          18 FKYSLVKFD-TAY-PYGEK-HEAFTRLAESSAS   47 (116)
T ss_pred             CCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHh
Confidence            467889999 977 66775 5888888888854

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=91.22  E-value=0.92  Score=41.06  Aligned_cols=37  Identities=14%  Similarity=-0.043  Sum_probs=27.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  310 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I  310 (384)
                      .||.+|+.|. -..||.|++..+++.++.+    .++.|.-+
T Consensus       106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~  142 (232)
T PRK10877        106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYL  142 (232)
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEE
Confidence            5788888887 8999999999888876643    45665443

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=91.02  E-value=0.76  Score=36.73  Aligned_cols=31  Identities=19%  Similarity=0.026  Sum_probs=23.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ  302 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~  302 (384)
                      +.+.+||-|+ ++| |-|.. +|...++.+++..
T Consensus        17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~   47 (116)
T cd03007          17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSAS   47 (116)
T ss_pred             cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHh
Confidence            4578999999 966 55554 5888888888854

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=90.74  E-value=0.33  Score=38.95  Aligned_cols=92  Identities=11%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             EccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178         74 KLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  152 (384)
Q Consensus        74 ~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  152 (384)
                      .|+++++| .+||.|-|..--+.-..++..|.+....+.++++.++.|.-+......                .++-.+.
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----------------~~~~~~~   65 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----------------KPLSPED   65 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----------------CcCCHHH
Confidence            36778775 567777777766766778888888888888899888888544422111                1111122


Q ss_pred             cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        153 THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       153 ~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      ...+-+.|++.  +        ....+++|++||.++..
T Consensus        66 ~~~lr~~l~~~--~--------~~f~~vLiGKDG~vK~r   94 (118)
T PF13778_consen   66 IQALRKRLRIP--P--------GGFTVVLIGKDGGVKLR   94 (118)
T ss_pred             HHHHHHHhCCC--C--------CceEEEEEeCCCcEEEe
Confidence            35677778873  1        12467899999999644

>KOG0912|consensus

Probab=90.72  E-value=0.38  Score=44.45  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  303 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~  303 (384)
                      ...|+|+|+ |.||+..+.-.|-+++..++++++
T Consensus        13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e   45 (375)
T KOG0912|consen   13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQE   45 (375)
T ss_pred             ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHh
Confidence            468999999 999999999999999999988763

>KOG3425|consensus

Probab=90.70  E-value=0.67  Score=36.78  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=36.8

Q ss_pred             cccc-CCCeEEEEEeeC-------CCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         75 LSDY-YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        75 l~~~-~gk~vvl~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++ +|+.+.+.|..+       +|||.|..-.|-+.+..+.. ..++.+|-|-+.+
T Consensus        19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~   75 (128)
T KOG3425|consen   19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGN   75 (128)
T ss_pred             HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-CCceEEEEEEecC
Confidence            3444 667777777744       59999999999998888743 4578888887765

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=90.70  E-value=1.8  Score=31.49  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=16.4

Q ss_pred             CCCCcCchHhHHHHHHHHHHH
Q psy17178        280 LDFTFVCPTEILAFNDRLEEF  300 (384)
Q Consensus       280 a~~c~~C~~~~~~l~~l~~~~  300 (384)
                      +..||.|+.....++++.+.+
T Consensus         7 ~~~C~~C~~~~~~~~~~~~~~   27 (76)
T PF13192_consen    7 SPGCPYCPELVQLLKEAAEEL   27 (76)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHHHHHHhc
Confidence            777999997777777777655

...

>KOG0191|consensus

Probab=89.97  E-value=0.66  Score=45.33  Aligned_cols=33  Identities=9%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ  302 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~  302 (384)
                      .++..+|.|| ++||++|....|...++...+++
T Consensus        46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~   78 (383)
T KOG0191|consen   46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG   78 (383)
T ss_pred             cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC
Confidence            4568899999 99999999999999999988865

>TIGR02180 GRX_euk Glutaredoxin

Probab=89.93  E-value=0.31  Score=35.88  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=25.9

Q ss_pred             EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      +.|+ ++|||.|....+.|.++.  .. ..+.++-|+.+
T Consensus         2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~   36 (84)
T TIGR02180         2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL   36 (84)
T ss_pred             EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence            4566 999999999999888876  21 23677777765

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=89.83  E-value=0.91  Score=32.01  Aligned_cols=55  Identities=9%  Similarity=-0.005  Sum_probs=31.6

Q ss_pred             EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178         85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSDLT  153 (384)
Q Consensus        85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  153 (384)
                      +.|. .+|||.|..-...|.+       .++.+..+..|. ....+++.+..      ....+|.+.+.+
T Consensus         3 ~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~------~~~~vP~i~~~~   58 (73)
T cd02976           3 TVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLN------GYRSVPVVVIGD   58 (73)
T ss_pred             EEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHc------CCcccCEEEECC
Confidence            3444 8999999986555544       466666777765 22223333210      024677776643

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products

Probab=89.77  E-value=2.7  Score=36.01  Aligned_cols=114  Identities=14%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             ccccccCCCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHH-------HHHhCC--
Q psy17178         47 TFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-------EFHQIN--  114 (384)
Q Consensus        47 ~~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~-------~~~~~~--  114 (384)
                      ....+.+|..+|+..+.-.  .||+++.|.+.   .|++-|+.|-...-.+.+...+..|.+..+       .|...+  
T Consensus        26 ~a~~l~~G~Rlp~~~v~r~--aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~  103 (169)
T PF07976_consen   26 LAGGLRPGRRLPSAKVVRH--ADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRD  103 (169)
T ss_dssp             GBTTS-TTCB----EEEET--TTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-
T ss_pred             cccCcCCccccCCceEEEE--cCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCC
Confidence            3457789999999998532  38899999976   689999888855555555445555555443       443322  


Q ss_pred             ----cEEEEEeCCC--HHhHHhhccCccccCCCCcc-ceeEEeeC------cchhHHhhcC
Q psy17178        115 ----TEVVAASVDS--HFTHLAWVNTPRKEGGLGKL-KIPLLSDL------THKISLDYGV  162 (384)
Q Consensus       115 ----v~vi~Vs~d~--~~~~~~~~~~~~~~~~~~~~-~~p~l~D~------~~~~~~~ygv  162 (384)
                          ++++.|...+  .-...++-+.++...+..++ .+.++.|.      .+.+.+.|||
T Consensus       104 ~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gi  164 (169)
T PF07976_consen  104 PDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGI  164 (169)
T ss_dssp             TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTB
T ss_pred             CCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCC
Confidence                7888887654  22233444333221111132 46677775      3778888886

The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=89.72  E-value=1.3  Score=36.72  Aligned_cols=40  Identities=5%  Similarity=-0.156  Sum_probs=28.6

Q ss_pred             ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        335 KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       335 ~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .-.++.|..+.+-.+|++-.     -....+++|++|+|.++++.
T Consensus       126 wSq~vlD~~gvak~AWqL~e-----~~SaivVlDk~G~VkfvkeG  165 (184)
T COG3054         126 WSQFVLDSNGVAKNAWQLKE-----ESSAVVVLDKDGRVKFVKEG  165 (184)
T ss_pred             ceeeEEccchhhhhhhcccc-----ccceEEEEcCCCcEEEEecC
Confidence            34466788885555898832     23467899999999997763

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=89.65  E-value=1.1  Score=30.83  Aligned_cols=38  Identities=8%  Similarity=-0.046  Sum_probs=25.8

Q ss_pred             EEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        275 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       275 l~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      +.|. ..+||.|......|       ++.|+.+-.+.++..+..++
T Consensus         2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~   39 (60)
T PF00462_consen    2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEARE   39 (60)
T ss_dssp             EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHH
T ss_pred             EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHH
Confidence            4555 89999998766655       45678888888775433333

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=89.46  E-value=0.8  Score=37.83  Aligned_cols=136  Identities=13%  Similarity=0.023  Sum_probs=72.9

Q ss_pred             cccCCCCCCccEEEeee--cCcc-----ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHH-HHHhCCc-EEEEE
Q psy17178         50 SKNLSKPAPFWQGTAVV--DGQL-----KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLE-EFHQINT-EVVAA  120 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~--~~~g-----~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~-~~~~~~v-~vi~V  120 (384)
                      .++.|++.|..-..+.-  .-++     ++...+++.||.-||.-..+- ...-.+..+.+..+.. +|..... .---|
T Consensus        22 nlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGR-tsaKE~Na~lieaIk~a~fp~~~YQTTTIi  100 (184)
T COG3054          22 NLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGR-TSAKEKNATLIEAIKSAKFPHDRYQTTTII  100 (184)
T ss_pred             hcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcc-cchhhhchHHHHHHHhccCChHHceeeEEe
Confidence            56788999987654310  0022     244566778997777666332 2211222233332221 1211112 22346


Q ss_pred             eCCCH-HhHHhhccCccccCCCCccce-eEEeeCcchhHH-hhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        121 SVDSH-FTHLAWVNTPRKEGGLGKLKI-PLLSDLTHKISL-DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       121 s~d~~-~~~~~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~-~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      +.|++ .-..-|.+.-.+. +...++| .++.|..+ +++ ++++....          .+++++|++|+|..++.|.+.
T Consensus       101 N~DDAi~GtgmFVkssae~-~Kke~pwSq~vlD~~g-vak~AWqL~e~~----------SaivVlDk~G~VkfvkeGaLt  168 (184)
T COG3054         101 NTDDAIPGTGMFVKSSAES-NKKEYPWSQFVLDSNG-VAKNAWQLKEES----------SAVVVLDKDGRVKFVKEGALT  168 (184)
T ss_pred             ccCCccccccceeecchhh-ccccCCceeeEEccch-hhhhhhcccccc----------ceEEEEcCCCcEEEEecCCcc
Confidence            77762 2333444432222 1113344 47788888 555 89984332          567899999999999888774


Q ss_pred             e
Q psy17178        198 S  198 (384)
Q Consensus       198 p  198 (384)
                      .
T Consensus       169 ~  169 (184)
T COG3054         169 Q  169 (184)
T ss_pred             H
Confidence            3

>KOG3425|consensus

Probab=89.30  E-value=0.91  Score=36.07  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             ccc-CCCeEEEEEEeC-------CCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        266 SDY-YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       266 ~d~-~Gk~vvl~F~~a-------~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      ++. +||.+.+.|..+       +|||.|....|.+.+..+... .++.+|-+.+.+
T Consensus        20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~   75 (128)
T KOG3425|consen   20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGN   75 (128)
T ss_pred             HHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecC
Confidence            344 677677777633       599999999999999888543 568888888764

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=89.03  E-value=0.62  Score=38.47  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=27.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH  301 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~  301 (384)
                      .++++|+.|+ ..+||.|....+.+.++..+++
T Consensus         4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCC
Confidence            4678888887 9999999999999999887664

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=88.95  E-value=2.1  Score=38.91  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=28.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ  302 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~  302 (384)
                      .||+.+++.. +.|||.|..+.-.|--....|+.
T Consensus        57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfGn   89 (249)
T PF06053_consen   57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFGN   89 (249)
T ss_pred             CCeeEEEEEe-cccCccchhhHHHHHHHHHhcCC
Confidence            6898777776 99999999999999888888864

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=88.76  E-value=2.2  Score=37.33  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=22.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFND  295 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~  295 (384)
                      .+++.++.|. ...||.|....+.+.+
T Consensus        76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFT-DPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence            4788888877 8999999999988877

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR02180 GRX_euk Glutaredoxin

Probab=88.55  E-value=0.54  Score=34.57  Aligned_cols=37  Identities=19%  Similarity=0.105  Sum_probs=26.6

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |+.|+ ++|||+|....+.|.++.  .. ..++++-|+.++
T Consensus         1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~   37 (84)
T TIGR02180         1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLS   37 (84)
T ss_pred             CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCC
Confidence            34566 999999999999888865  21 236777777653

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=88.38  E-value=1.4  Score=30.96  Aligned_cols=31  Identities=10%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .|. ..|||.|......|.+       .++.+..+.+|.
T Consensus         4 l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~   34 (73)
T cd02976           4 VYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE   34 (73)
T ss_pred             EEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence            444 8999999875554443       467777777764

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=88.20  E-value=1.2  Score=37.28  Aligned_cols=49  Identities=12%  Similarity=0.034  Sum_probs=36.6

Q ss_pred             EEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHH-HhCCcEEEEEeC
Q psy17178         73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF-HQINTEVVAASV  122 (384)
Q Consensus        73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~-~~~~v~vi~Vs~  122 (384)
                      +.+.+-.++++|+.|+ ...||+|.+..+.+.++.+++ .+..+.++.+..
T Consensus         5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            4455656678888887 889999999999999999998 334577777765

...

>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family

Probab=88.19  E-value=3.6  Score=31.96  Aligned_cols=69  Identities=10%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEE
Q psy17178        287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCL  366 (384)
Q Consensus       287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~l  366 (384)
                      ......|++..+++++.+-.=+.|++++.+.+++..+-        -...++.-.+...+++.+|+      .++|  ++
T Consensus        34 ~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l------~hYP--vL   97 (105)
T TIGR03765        34 PASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGL------RHYP--VL   97 (105)
T ss_pred             HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCC------Cccc--EE
Confidence            36777888999999888877788899998887776553        35667777777899999999      7888  88


Q ss_pred             EeCCc
Q psy17178        367 ECYKM  371 (384)
Q Consensus       367 Id~~G  371 (384)
                      |..+|
T Consensus        98 it~tg  102 (105)
T TIGR03765        98 ITATG  102 (105)
T ss_pred             EecCc
Confidence            98887

This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=87.75  E-value=0.89  Score=41.68  Aligned_cols=29  Identities=10%  Similarity=0.024  Sum_probs=23.2

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLE  108 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~  108 (384)
                      .+|.+|+.|. -..||+|++...++.++.+
T Consensus       116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~  144 (251)
T PRK11657        116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVD  144 (251)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence            4577788888 8889999998888777554

>KOG1731|consensus

Probab=87.70  E-value=0.36  Score=48.38  Aligned_cols=39  Identities=15%  Similarity=0.195  Sum_probs=31.5

Q ss_pred             eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-C-cEEEEEe
Q psy17178        272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAAS  311 (384)
Q Consensus       272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~-v~vv~Is  311 (384)
                      .-+|-|+ ++||+.|+...|.+.++.++.... + |.|.+|.
T Consensus        59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVd   99 (606)
T KOG1731|consen   59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVD   99 (606)
T ss_pred             hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEee
Confidence            4578999 999999999999999999998763 3 4455553

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=87.62  E-value=0.79  Score=37.82  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=25.6

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH  111 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~  111 (384)
                      ++++|+.|+ ..+||.|....+.+.++..++.
T Consensus         5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCC
Confidence            567777777 9999999999999988776653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=87.48  E-value=0.24  Score=50.51  Aligned_cols=71  Identities=44%  Similarity=0.816  Sum_probs=58.2

Q ss_pred             ccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhhccccCC
Q psy17178        171 RGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIP  241 (384)
Q Consensus       171 ~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (384)
                      +|...+..+++.---|-+.|+.++.+|....|++|+++.++++.++|++++++.++++.+.+...++.+.|
T Consensus       295 rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aip  365 (521)
T PF02990_consen  295 RGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIP  365 (521)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            45454444444555688999999999999999999999999999999999999999988888887776655

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=87.44  E-value=1.1  Score=33.44  Aligned_cols=38  Identities=13%  Similarity=-0.041  Sum_probs=28.3

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |..|. .+|||.|.+-...|+++..++  .++.+.-|+.+.
T Consensus         3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~   40 (85)
T PRK11200          3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA   40 (85)
T ss_pred             EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence            34455 899999999999999988765  466666666653

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=87.38  E-value=1.4  Score=32.70  Aligned_cols=38  Identities=13%  Similarity=-0.041  Sum_probs=29.4

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      |..|. .+|||.|......|+++..++  .++.+.-|+++.
T Consensus         3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~   40 (85)
T PRK11200          3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA   40 (85)
T ss_pred             EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence            34455 999999999999999998765  467777777753

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=86.62  E-value=3.6  Score=33.65  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=25.7

Q ss_pred             CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178        342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW  384 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~  384 (384)
                      .+..++.+||+      ...|+.++. ++|+++.... |..+|
T Consensus        79 ~~~~LA~~fgV------~siPTLl~F-kdGk~v~~i~-G~~~k  113 (132)
T PRK11509         79 QSEAIGDRFGV------FRFPATLVF-TGGNYRGVLN-GIHPW  113 (132)
T ss_pred             CCHHHHHHcCC------ccCCEEEEE-ECCEEEEEEe-CcCCH
Confidence            34677889999      788987777 5999998655 55544

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=86.43  E-value=1.8  Score=36.09  Aligned_cols=49  Identities=12%  Similarity=0.017  Sum_probs=36.5

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASV  312 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~  312 (384)
                      ..+.+-.++++|+.|+ ..-||.|....+.+.++.+++- +..+.++....
T Consensus         5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            3455566788888887 8889999999999999999983 34577777754

...

>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5

Probab=86.22  E-value=5  Score=33.16  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             hHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEE
Q psy17178        287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCL  366 (384)
Q Consensus       287 ~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~l  366 (384)
                      ......|++..+++++.+-.=+.|++++.+.+++..+-        -...++.-.....+++.+|+      .|+|  +|
T Consensus        72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l--------apgl~l~P~sgddLA~rL~l------~HYP--vL  135 (142)
T PF11072_consen   72 PLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL--------APGLPLLPVSGDDLARRLGL------SHYP--VL  135 (142)
T ss_pred             HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCeecCCCHHHHHHHhCC------Cccc--EE
Confidence            36778888999999888877788999999888876654        35677777777899999999      7898  78


Q ss_pred             EeCCce
Q psy17178        367 ECYKMV  372 (384)
Q Consensus       367 Id~~G~  372 (384)
                      |..+|.
T Consensus       136 It~~gi  141 (142)
T PF11072_consen  136 ITATGI  141 (142)
T ss_pred             eecCCc
Confidence            887763

Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=85.23  E-value=1.9  Score=30.05  Aligned_cols=56  Identities=9%  Similarity=-0.042  Sum_probs=32.3

Q ss_pred             EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178         85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  153 (384)
Q Consensus        85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  153 (384)
                      +.|. ..|||.|+.-...|.+.       ++.+.-++.+......++.+..   .  +...+|.+...+
T Consensus         3 ~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~---~--~~~~~P~~~~~~   58 (72)
T cd02066           3 VVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKEL---S--GWPTVPQIFING   58 (72)
T ss_pred             EEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHH---h--CCCCcCEEEECC
Confidence            3444 89999999888777664       4556666665433233333211   0  124677776543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=83.25  E-value=2.7  Score=29.25  Aligned_cols=39  Identities=8%  Similarity=-0.070  Sum_probs=24.8

Q ss_pred             EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178        276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  322 (384)
Q Consensus       276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~  322 (384)
                      .|. ..|||.|......|.+.       ++.+.-++++......+.+
T Consensus         4 ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l   42 (72)
T cd02066           4 VFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREEL   42 (72)
T ss_pred             EEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHH
Confidence            344 89999998877766644       3666667766543334433

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=82.73  E-value=2.4  Score=31.07  Aligned_cols=56  Identities=9%  Similarity=0.039  Sum_probs=33.4

Q ss_pred             EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178         83 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  152 (384)
Q Consensus        83 vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  152 (384)
                      -|..|. .+|||.|.+--..|.+       .|+....+.++.......+.+..      +...+|.+...
T Consensus         9 ~V~ly~-~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~~~~~~~~~~~~------g~~~vP~i~i~   64 (79)
T TIGR02190         9 SVVVFT-KPGCPFCAKAKATLKE-------KGYDFEEIPLGNDARGRSLRAVT------GATTVPQVFIG   64 (79)
T ss_pred             CEEEEE-CCCCHhHHHHHHHHHH-------cCCCcEEEECCCChHHHHHHHHH------CCCCcCeEEEC
Confidence            344555 9999999987766643       46666667666533333443211      13468877653

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>KOG0912|consensus

Probab=81.81  E-value=1.3  Score=41.00  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=28.8

Q ss_pred             CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC
Q psy17178         81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  113 (384)
Q Consensus        81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~  113 (384)
                      ..|+|+|+ ++||+..+.-.|-+.+..+++++.
T Consensus        14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e   45 (375)
T KOG0912|consen   14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQE   45 (375)
T ss_pred             eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHh
Confidence            57899999 999999999999999999888753

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=81.66  E-value=2.2  Score=29.20  Aligned_cols=53  Identities=9%  Similarity=0.006  Sum_probs=32.3

Q ss_pred             EEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH-HhHHhhccCccccCCCCccceeEEee
Q psy17178         85 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH-FTHLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus        85 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      +.|. ..+||.|......|       ++.|+..-.+.++.. +..+++.+..      +..++|.+.-
T Consensus         2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~------g~~~~P~v~i   55 (60)
T PF00462_consen    2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELS------GVRTVPQVFI   55 (60)
T ss_dssp             EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHH------SSSSSSEEEE
T ss_pred             EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHc------CCCccCEEEE
Confidence            4555 89999999877666       346777777777653 3333333321      1457776653

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=81.51  E-value=10  Score=29.67  Aligned_cols=77  Identities=18%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      .++++|+= .++.||+-.....++++.++...++ +.++-+.+-....                        -...++..
T Consensus        19 ~~~~~iFK-HSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~------------------------vSn~IAe~   72 (105)
T PF11009_consen   19 EKPVLIFK-HSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRP------------------------VSNAIAED   72 (105)
T ss_dssp             -SEEEEEE-E-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHH------------------------HHHHHHHH
T ss_pred             cCcEEEEE-eCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCch------------------------hHHHHHHH
Confidence            56655544 4888888888888888777766433 6666665432111                        12577889


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      |||.     .-.|-.+||. ||++++.-.
T Consensus        73 ~~V~-----HeSPQ~ili~-~g~~v~~aS   95 (105)
T PF11009_consen   73 FGVK-----HESPQVILIK-NGKVVWHAS   95 (105)
T ss_dssp             HT---------SSEEEEEE-TTEEEEEEE
T ss_pred             hCCC-----cCCCcEEEEE-CCEEEEECc
Confidence            9994     2367777775 999998543

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum

Probab=80.49  E-value=23  Score=30.18  Aligned_cols=121  Identities=14%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             CCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC----------------C
Q psy17178         54 SKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI----------------N  114 (384)
Q Consensus        54 G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~----------------~  114 (384)
                      |...|++.....  .+++++.|.+.   .|++-|+.|- +.--  +..+...+.++.+.+...                =
T Consensus         1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGrfrI~vFa-gd~~--~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~   75 (167)
T cd02979           1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGRFRIYVFA-GDIA--PAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV   75 (167)
T ss_pred             CCcCCCceEEEe--cCCCCHhHhhhccCCCCEEEEEEc-CCCC--chhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence            566777776543  26778877766   5899888888 4422  234445555555554321                1


Q ss_pred             cEEEEEeCCCHHhH--HhhccCccccCCCCccc-eeEEeeCc------chhHHhhcCcccCCCCcccceeEEEEEEEecC
Q psy17178        115 TEVVAASVDSHFTH--LAWVNTPRKEGGLGKLK-IPLLSDLT------HKISLDYGVYLSDQGPVRGSLLSTAIFVYALT  185 (384)
Q Consensus       115 v~vi~Vs~d~~~~~--~~~~~~~~~~~~~~~~~-~p~l~D~~------~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~  185 (384)
                      ++++.|........  ..+-+.+.......... .-++.|..      +.+.+.||+-..     +     .+++++-||
T Consensus        76 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~-----~-----g~vvvvRPD  145 (167)
T cd02979          76 FDVVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE-----R-----GAVVVVRPD  145 (167)
T ss_pred             EEEEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC-----C-----CCEEEECCC
Confidence            56667765432111  11111110000000222 23566644      568888887221     1     245699999


Q ss_pred             CCcc
Q psy17178        186 SPVN  189 (384)
Q Consensus       186 G~v~  189 (384)
                      |-|.
T Consensus       146 gyVg  149 (167)
T cd02979         146 QYVA  149 (167)
T ss_pred             CeEE
Confidence            9774

PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=80.39  E-value=2.5  Score=32.62  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=20.2

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |+.|- .+|||+|.+.-..|.+       .|+..-.+.+|.
T Consensus        10 Vvvys-k~~Cp~C~~ak~~L~~-------~~i~~~~vdid~   42 (99)
T TIGR02189        10 VVIFS-RSSCCMCHVVKRLLLT-------LGVNPAVHEIDK   42 (99)
T ss_pred             EEEEE-CCCCHHHHHHHHHHHH-------cCCCCEEEEcCC
Confidence            34555 7999999976554443       355444555553

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		1e-54
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		1e-54
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		1e-54
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		1e-54
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		5e-54
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		5e-54
3tjj_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		2e-53
3tks_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		2e-53
3qpm_A	240	Crystal Structure Of Peroxiredoxin Prx4 From Pseudo		3e-53
1zye_A	220	Crystal Strucutre Analysis Of Bovine Mitochondrial		1e-43
2rii_A	199	Crystal Structure Of Human Peroxiredoxin I In Compl		4e-42
1qmv_A	197	Thioredoxin Peroxidase B From Red Blood Cells Lengt		4e-42
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		8e-42
2z9s_A	199	Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI		2e-40
3hy2_A	206	Crystal Structure Of Sulfiredoxin In Complex With P		4e-40
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		2e-36
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		2e-36
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		3e-36
3sbc_A	216	Crystal Structure Of Saccharomyces Cerevisiae Tsa1c		1e-30
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		2e-30
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		1e-29
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		1e-29
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		1e-28
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		3e-28
2h66_A	213	The Crystal Structure Of Plasmodium Vivax 2-Cys Per		1e-27
2h01_A	192	Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I		2e-24
2h01_A	192	Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I		5e-24
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		3e-23
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		4e-22
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		6e-21
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		5e-20
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		5e-16
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		5e-16
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		5e-16
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		6e-16
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-15
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-15
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-15
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-15
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		3e-15
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		3e-15
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		7e-15
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		7e-15
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		1e-14
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		1e-14
1we0_A	187	Crystal Structure Of Peroxiredoxin (Ahpc) From Amph		1e-11
1we0_A	187	Crystal Structure Of Peroxiredoxin (Ahpc) From Amph		2e-11
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		6e-11
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		8e-11
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		7e-11
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		9e-11
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		7e-11
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		9e-11
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		7e-11
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		9e-11
2ywn_A	157	Crystal Structure Of Peroxiredoxin-Like Protein Fro		3e-10
2ywn_A	157	Crystal Structure Of Peroxiredoxin-Like Protein Fro		3e-10
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		8e-10
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		1e-09
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		1e-09
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		1e-09
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		1e-09
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		2e-09
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		1e-09
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		2e-09
3hjp_A	164	The Crystal Structure Of Bcp4 From Sulfolobus Solfa		8e-09
3hjp_A	164	The Crystal Structure Of Bcp4 From Sulfolobus Solfa		8e-09
1xcc_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		6e-08
1xcc_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		2e-06
3tb2_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		1e-06
3tb2_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		5e-05
3ixr_A	179	Crystal Structure Of Xylella Fastidiosa Prxq C47s M		4e-06
3ixr_A	179	Crystal Structure Of Xylella Fastidiosa Prxq C47s M		4e-06
1prx_A	224	Horf6 A Novel Human Peroxidase Enzyme Length = 224		2e-05
1prx_A	224	Horf6 A Novel Human Peroxidase Enzyme Length = 224		2e-05
4gqc_A	164	Crystal Structure Of Aeropyrum Pernix Peroxiredoxin		2e-05
4gqc_A	164	Crystal Structure Of Aeropyrum Pernix Peroxiredoxin		2e-05
2cx3_A	164	Crystal Structure Of A Bacterioferritin Comigratory		6e-05
2cx3_A	164	Crystal Structure Of A Bacterioferritin Comigratory		6e-05
1xxu_A	153	Crystal Structure Of Ahpe From Mycrobacterium Tuber		8e-05
1xxu_A	153	Crystal Structure Of Ahpe From Mycrobacterium Tuber		8e-05
3gkk_A	163	Insights Into The Alkyl Peroxide Reduction Activity		2e-04
3gkk_A	163	Insights Into The Alkyl Peroxide Reduction Activity		2e-04
2v2g_A	233	Crystal Structure Of The C45s Mutant Of The Peroxir		3e-04
3drn_A	161	The Crystal Structure Of Bcp1 From Sulfolobus Sulfa		8e-04

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  210 bits (535), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 58  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 115
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 116 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 175
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 176 EDSGHTL 182

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  210 bits (535), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 58  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 115
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 116 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 175
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 176 EDSGHTL 182

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 58  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 115
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 116 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 175
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 176 EDSGHTL 182

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 50  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 107
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 108 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 167
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 168 EDSGHTL 174

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%)
Query: 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           F S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF 
Sbjct: 20  FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 79
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
            INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTL
Sbjct: 80  SINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 139

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 111/127 (87%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF 
Sbjct: 50  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 107
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS F HLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 108 DRLEEFRSINTEVVACSVDSQFEHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 167
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 168 EDSGHTL 174

>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254

Iteration: 1
 Score =  206 bits (524), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 111/127 (87%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFV PTEI+AF 
Sbjct: 58  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFG 115
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 116 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 175
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 176 EDSGHTL 182

>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246

Iteration: 1
 Score =  206 bits (524), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 111/127 (87%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFV PTEI+AF 
Sbjct: 50  HLSKAK--ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFG 107
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DRLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 108 DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL 167
Query: 355 SDQGHTL 361
            D GHTL
Sbjct: 168 EDSGHTL 174

>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 111/127 (87%), Gaps = 2/127 (1%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
           H S+A   +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+
Sbjct: 44  HLSKAK--ISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFS 101
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           DR+ EF  INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL
Sbjct: 102 DRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYL 161
Query: 355 SDQGHTL 361
            DQGHTL
Sbjct: 162 EDQGHTL 168

>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220

Iteration: 1
 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 96/121 (79%)
Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
           P V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EF
Sbjct: 27  PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEF 86
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           H +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  
Sbjct: 87  HDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLA 146
Query: 361 L 361
           L
Sbjct: 147 L 147

>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 8   IGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFK 67
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           ++N++V+ ASVDSHF HLAWVNTP+K+GGLG + IPL+SD    I+ DYGV  +D+G
Sbjct: 68  KLNSQVIGASVDSHFEHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 95/116 (81%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFV PTEI+AF++R E+F +
Sbjct: 7   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRAEDFRK 66
Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G
Sbjct: 67  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG 122

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 8   IGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFK 67
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           ++N +V+ ASVDSHF+HLAW+NTP+K+GGLG + IPL+SD    I+ DYGV  +D+G
Sbjct: 68  KLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFV PTEI+AF+DR EEF 
Sbjct: 8   IGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVSPTEIIAFSDRAEEFK 67
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           ++N +V+ ASVDSHF HLAW+NTP+K+GGLG + IPL+SD    I+ DYGV  +D+G
Sbjct: 68  KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206

Iteration: 1
 Score =  162 bits (409), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFV PTEI+AF+DR EEF 
Sbjct: 8   IGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVDPTEIIAFSDRAEEFK 67
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           ++N++V+ ASVDSHF HL WVNTP+K+GGLG + IPL+SD    I+ DYGV  +D+G
Sbjct: 68  KLNSQVIGASVDSHFEHLEWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 89/118 (75%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+  
Sbjct: 40  NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR 99
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 100 NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 157

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 89/118 (75%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+  
Sbjct: 40  NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR 99
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 100 NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 157

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 89/118 (75%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+  
Sbjct: 43  NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR 102
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 103 NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 160

>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 294
             S  +  V K AP ++ TAVVDG   E+ L  Y GKY+V  F PL FTFV PTEI+AF+
Sbjct: 17  RGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFS 76
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
           +  ++F +   +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D  H +S DYGV +
Sbjct: 77  EAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLI 136
Query: 355 SDQGHTL 361
            ++G  L
Sbjct: 137 EEEGVAL 143

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 235 HASRAIPFVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF 293
           H S     ++ PAP ++  A++ +G  K+I LS Y GK++V FFYPLDFTFVCPTE++AF
Sbjct: 20  HMSCGNAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAF 79
Query: 294 NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +D +  F+++N EV+A S+DS + HL W    RK+GGLG + IP+L+D T  I+  YGV 
Sbjct: 80  SDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVL 139
Query: 354 LSDQG 358
              QG
Sbjct: 140 EESQG 144

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 56  PAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
           PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  I 
Sbjct: 11  PAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG 70
Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 168
            EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G
Sbjct: 71  CEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG 124

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 246 PAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
           PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  I 
Sbjct: 11  PAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG 70
Query: 305 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
            EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G
Sbjct: 71  CEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG 124

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 53  LSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
           L+ PAP +   A+  +G  K++ LS Y GKY+V FFYP DFTFVCPTEI+ F+D  + F 
Sbjct: 8   LNHPAPEFDDXALXPNGTFKKVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFA 67
Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 168
           +INTEV++ S DS ++HL W +  RK+GGLG   IP L+D T  I+  YGV   D G
Sbjct: 68  EINTEVISCSCDSEYSHLQWTSVDRKKGGLGPXAIPXLADKTKAIARAYGVLDEDSG 124

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 246 PAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
           PAP +   A+  +G  K++ LS Y GKY+V FFYP DFTFVCPTEI+ F+D  + F +IN
Sbjct: 11  PAPEFDDXALXPNGTFKKVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFAEIN 70
Query: 305 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           TEV++ S DS ++HL W +  RK+GGLG   IP L+D T  I+  YGV   D G
Sbjct: 71  TEVISCSCDSEYSHLQWTSVDRKKGGLGPXAIPXLADKTKAIARAYGVLDEDSG 124

>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 238 RAIP-FVSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFN 294
           R  P +V K APF++  AV  D    E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A +
Sbjct: 17  RGSPTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALD 76
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL 354
             L+ FH+ N E++  SVDS +THLAW  TP  +GG+G +K  LLSD+T  IS DY V  
Sbjct: 77  KALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF 136
Query: 355 SD 356
            D
Sbjct: 137 DD 138

>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 57  APFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
           AP ++  AV  D    E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A +  L+ F + N
Sbjct: 6   APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 65
Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSL 174
            E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V  ++   +R  +
Sbjct: 66  VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFV 125
Query: 175 L 175
           L
Sbjct: 126 L 126

>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 2/112 (1%)
Query: 247 APFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
           AP ++  AV  D    E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A +  L+ F + N
Sbjct: 6   APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 65
Query: 305 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
            E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V  ++
Sbjct: 66  VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE 117

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 84/126 (66%), Gaps = 3/126 (2%)
Query: 53  LSKPAPFWQGTAVV-DGQLKE-IKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEE 109
           ++K AP ++  AV+ + ++ E  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R+++
Sbjct: 3   VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKD 62
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP 169
           FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   +   
Sbjct: 63  FHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIA 122
Query: 170 VRGSLL 175
           +RG+ L
Sbjct: 123 LRGAFL 128

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 243 VSKPAPFWQGTAVV-DGQLKE-IKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEE 299
           V+K AP ++  AV+ + ++ E  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R+++
Sbjct: 3   VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKD 62
Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
           FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   +
Sbjct: 63  FHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE 119

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 67  DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 125
           + ++  + LS + G KY    FYPL++TFVCPTEI+ FN  +++F   N E++  SVDS 
Sbjct: 42  NNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSV 101
Query: 126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
           ++HLAW N P ++GG+G ++  L+SD+   IS +Y V   +   +RG
Sbjct: 102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRG 148

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 257 DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315
           + ++  + LS + G KY    FYPL++TFVCPTEI+ FN  +++F   N E++  SVDS 
Sbjct: 42  NNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSV 101
Query: 316 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
           ++HLAW N P ++GG+G ++  L+SD+   IS +Y V
Sbjct: 102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS 173
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G     
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG----- 115
Query: 174 LLSTAIFV 181
           L   A FV
Sbjct: 116 LADRATFV 123

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 115

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS 173
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G     
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG----- 115
Query: 174 LLSTAIFV 181
           L   A FV
Sbjct: 116 LADRATFV 123

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 115

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS 173
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G     
Sbjct: 64  GVDVYSVSTDTHFVHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG----- 115
Query: 174 LLSTAIFV 181
           L   A FV
Sbjct: 116 LADRATFV 123

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 64  GVDVYSVSTDTHFVHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 115

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS 173
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G     
Sbjct: 64  GVDVYSVSTDTHFDHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG----- 115
Query: 174 LLSTAIFV 181
           L   A FV
Sbjct: 116 LADRATFV 123

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 64  GVDVYSVSTDTHFDHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 115

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS 173
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G     
Sbjct: 64  GVDVYSVSTDTHFIHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG----- 115
Query: 174 LLSTAIFV 181
           L   A FV
Sbjct: 116 LADRATFV 123

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 64  GVDVYSVSTDTHFIHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 115

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL 63
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS 173
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G     
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG----- 115
Query: 174 LLSTAIFV 181
           L   A FV
Sbjct: 116 LADRATFV 123

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL 63
Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG 115

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 58  PFWQGTAVVDGQLKEI---KLSDYY---------GKYLVFFFYPLDFTFVCPTEILAFND 105
           P +Q TA++ G L ++   +  DY+         GK+ V FF+P DFTFVCPTEI AF+ 
Sbjct: 11  PAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSK 70
Query: 106 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 165
             +EF   + +++  S+DS F H  W     +   L  L  P LSD+  ++S   GV  +
Sbjct: 71  LNDEFEDRDAQILGVSIDSEFAHFQWR---AQHNDLKTLPFPXLSDIKRELSQAAGVLNA 127
Query: 166 D 166
           D
Sbjct: 128 D 128

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 248 PFWQGTAVVDGQLKEI---KLSDYY---------GKYLVFFFYPLDFTFVCPTEILAFND 295
           P +Q TA++ G L ++   +  DY+         GK+ V FF+P DFTFVCPTEI AF+ 
Sbjct: 11  PAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSK 70
Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
             +EF   + +++  S+DS F H  W     +   L  L  P LSD+  ++S   GV  +
Sbjct: 71  LNDEFEDRDAQILGVSIDSEFAHFQWR---AQHNDLKTLPFPXLSDIKRELSQAAGVLNA 127
Query: 356 D 356
           D
Sbjct: 128 D 128

>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 72  EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131
           E+  +D  GK+ +  FYP DF+FVCPTE+        E  ++  EV + S D+HF H AW
Sbjct: 23  EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW 82
Query: 132 -VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGSLL---STAIFVYALTS 186
             N+P     +G ++  ++ D +  IS  + V   + G   RG+ +      I    + +
Sbjct: 83  HENSP----AVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINA 138
Query: 187 PVNGYAGGALYSRLGGRAWIRHCLLSAC 214
              G     L +++    ++R      C
Sbjct: 139 DGIGRDASTLINKVKAAQYVRENPGEVC 166

>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321
           E+  +D  GK+ +  FYP DF+FVCPTE+        E  ++  EV + S D+HF H AW
Sbjct: 23  EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW 82
Query: 322 -VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
             N+P     +G ++  ++ D +  IS  + V   + G
Sbjct: 83  HENSP----AVGSIEYIMIGDPSQTISRQFDVLNEETG 116

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 132

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 124

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 133

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 125

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 132

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 124

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 132

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 124

>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 67  DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 126
           D +LK++KLS   GK +V  FYP  FT VC  E+  F D + +F+Q+N  V+  SVD  F
Sbjct: 17  DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76
Query: 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
           ++ A+     KE    KL   +LSD   ++   Y V
Sbjct: 77  SNKAF-----KEH--NKLNFTILSDYNREVVKKYNV 105

>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 316
           D +LK++KLS   GK +V  FYP  FT VC  E+  F D + +F+Q+N  V+  SVD  F
Sbjct: 17  DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76
Query: 317 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
           ++ A+     KE    KL   +LSD   ++   Y V
Sbjct: 77  SNKAF-----KEH--NKLNFTILSDYNREVVKKYNV 105

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVSTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 132

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVSTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 124

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 133

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 125

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 133

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 125

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 73  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG--PVRGSLLSTA 178
            W     +  G+ ++  P+++D    ++   G+  ++     VRG  +  A
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 132

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 263 IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTL 361
            W     +  G+ ++  P+++D    ++   G+  ++   HT+
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTV 124

>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 65  VVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 123
           +VD  LK++K+ SD+ GK +V  FYP  FT V   E+  F D + +F+++N  V+  SVD
Sbjct: 13  LVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSVSTKEMSTFRDSMAKFNEVNAVVIGISVD 72
Query: 124 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
             F++ A+     KE    K+   ++SD   +    YGV
Sbjct: 73  PPFSNKAF-----KEQ--NKINFTIVSDFNREAVKAYGV 104

>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 255 VVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 313
           +VD  LK++K+ SD+ GK +V  FYP  FT V   E+  F D + +F+++N  V+  SVD
Sbjct: 13  LVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSVSTKEMSTFRDSMAKFNEVNAVVIGISVD 72
Query: 314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
             F++ A+     KE    K+   ++SD   +    YGV
Sbjct: 73  PPFSNKAF-----KEQ--NKINFTIVSDFNREAVKAYGV 104

>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 57  APFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 115
           A F   TA   G   + +L  Y    + + F +P DFT VC TE+       E+F ++N 
Sbjct: 7   ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNC 66
Query: 116 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLL 175
           +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +  + G  L
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPL 126
Query: 176 STAIFVYALTSPVNGYAGGALYSRLGGR 203
           +     +   SP        LY    GR
Sbjct: 127 TCRCLFF--ISPEKKIKATVLYPATTGR 152

>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 247 APFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 305
           A F   TA   G   + +L  Y    + + F +P DFT VC TE+       E+F ++N 
Sbjct: 7   ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNC 66
Query: 306 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347
           +++  S +S  +H  W+   +  G L K +IP++ D + +++
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA 108

>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 57  APFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 115
           A F   TA   G   + +L  Y    + + F +P DFT V  TE+       E+F ++N 
Sbjct: 7   ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVXTTELAELGKMHEDFLKLNC 66
Query: 116 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLL 175
           +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +  + G  L
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPL 126
Query: 176 STAIFVYALTSPVNGYAGGALYSRLGGR 203
           +     +   SP        LY    GR
Sbjct: 127 TCRCLFF--ISPEKKIKATVLYPATTGR 152

>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 247 APFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 305
           A F   TA   G   + +L  Y    + + F +P DFT V  TE+       E+F ++N 
Sbjct: 7   ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVXTTELAELGKMHEDFLKLNC 66
Query: 306 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 347
           +++  S +S  +H  W+   +  G L K +IP++ D + +++
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA 108

>pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 75  LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 134
           LSDY  ++LV +FYP D T    TE L FN  L +F QIN  V+  S DS  +H ++   
Sbjct: 46  LSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFC-- 103
Query: 135 PRKEGGLGKLKIPLLSD 151
             K+G       PL+SD
Sbjct: 104 -AKQG----FTFPLVSD 115

>pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 265 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 324
           LSDY  ++LV +FYP D T    TE L FN  L +F QIN  V+  S DS  +H ++   
Sbjct: 46  LSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFC-- 103
Query: 325 PRKEGGLGKLKIPLLSD 341
             K+G       PL+SD
Sbjct: 104 -AKQG----FTFPLVSD 115

>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 73  IKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131
           I+  D+ G  + + F +P DFT V  TE+        EF + N +++A S+DS   HLAW
Sbjct: 23  IRFHDFLGDSWGILFSHPRDFTPVXTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAW 82
Query: 132 ---VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG-SLLSTAIFVYA 183
              +N    E    KL  P++ D   ++++  G+    +   +G  + +  +FV+ 
Sbjct: 83  SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFG 138

>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 263 IKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321
           I+  D+ G  + + F +P DFT V  TE+        EF + N +++A S+DS   HLAW
Sbjct: 23  IRFHDFLGDSWGILFSHPRDFTPVXTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAW 82
Query: 322 ---VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY 375
              +N    E    KL  P++ D   ++++  G+   D     +K      ++V V+
Sbjct: 83  SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGML--DPAEKDEKGMPVTARVVFVF 137

>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 80  GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 139
           G+  V  F+P  F+ VC  E+  F D++ +  + N EV+A SVDS +         +K  
Sbjct: 33  GRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCL-------KKFK 85
Query: 140 GLGKLKIPLLSDLTHKISLDYGVYLSD 166
              +L   LLSD   ++   Y VY  D
Sbjct: 86  DENRLAFNLLSDYNREVIKLYNVYHED 112

>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 329
           G+  V  F+P  F+ VC  E+  F D++ +  + N EV+A SVDS +         +K  
Sbjct: 33  GRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCL-------KKFK 85
Query: 330 GLGKLKIPLLSDLTHKISLDYGVYLSD 356
              +L   LLSD   ++   Y VY  D
Sbjct: 86  DENRLAFNLLSDYNREVIKLYNVYHED 112

>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 80  GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 139
           G+  V  F+P  F+ VC  E+  F D+  +  + N EV+A SVDS +         +K  
Sbjct: 33  GRPAVLIFFPAAFSPVCTKELCTFRDKXAQLEKANAEVLAISVDSPWCL-------KKFK 85
Query: 140 GLGKLKIPLLSDLTHKISLDYGVYLSD 166
              +L   LLSD   ++   Y VY  D
Sbjct: 86  DENRLAFNLLSDYNREVIKLYNVYHED 112

>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 329
           G+  V  F+P  F+ VC  E+  F D+  +  + N EV+A SVDS +         +K  
Sbjct: 33  GRPAVLIFFPAAFSPVCTKELCTFRDKXAQLEKANAEVLAISVDSPWCL-------KKFK 85
Query: 330 GLGKLKIPLLSDLTHKISLDYGVYLSD 356
              +L   LLSD   ++   Y VY  D
Sbjct: 86  DENRLAFNLLSDYNREVIKLYNVYHED 112

>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 67  DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 125
           D   + + L  Y G K ++  F+PL FT +C  E+    D L EF   ++  +A SV   
Sbjct: 15  DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPP 74
Query: 126 FTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG 168
            TH  W               PLLSD      +S  YGV+    G
Sbjct: 75  PTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAG 112

>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 257 DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315
           D   + + L  Y G K ++  F+PL FT +C  E+    D L EF   ++  +A SV   
Sbjct: 15  DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPP 74
Query: 316 FTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG 358
            TH  W               PLLSD      +S  YGV+    G
Sbjct: 75  PTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAG 112

>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 72  EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 131
           +  L  + G +LV +FYP D T  C TE L FN  L EF +   +++  S DS  +H   
Sbjct: 27  QTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSH--- 83
Query: 132 VNTPRKEGGLGKLKIPLLSD 151
            N   K+G       PL+SD
Sbjct: 84  DNFCAKQG----FAFPLVSD 99

>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 321
           +  L  + G +LV +FYP D T  C TE L FN  L EF +   +++  S DS  +H   
Sbjct: 27  QTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSH--- 83
Query: 322 VNTPRKEGGLGKLKIPLLSD 341
            N   K+G       PL+SD
Sbjct: 84  DNFCAKQG----FAFPLVSD 99

>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 256 VDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
            D  + ++K  D+ G  + V F +P DFT V  TE+        +F +   +++A S D+
Sbjct: 14  ADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDN 73
Query: 315 HFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVI 373
              H  W    +   G+ G +  P+++D T ++++  G+   D+  T     L C  + I
Sbjct: 74  VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDE-RTSTGMPLTCRAVFI 132
Query: 374 V 374
           +
Sbjct: 133 I 133

>pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           V   AP ++G A      ++I LSDY GK+ +V +FYP D T     E  AF D  +   
Sbjct: 4   VGDKAPLFEGIA---DNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLK 60
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP--LLSDLTHKISLDYG 351
             +  V+  S D   +H  +     KE    K K+P  L+SD   KI   YG
Sbjct: 61  DYDVVVIGVSSDDINSHKRF-----KE----KYKLPFILVSDPDKKIRELYG 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	3e-74
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	4e-72
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	9e-74
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	6e-72
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	1e-73
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	8e-72
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	1e-73
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	7e-72
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	2e-73
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	2e-71
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	2e-73
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	2e-71
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	3e-73
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	2e-71
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	2e-72
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	4e-70
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	7e-72
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	3e-70
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	9e-68
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	5e-66
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	3e-67
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	1e-65
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	3e-67
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	6e-67
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	6e-67
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	2e-66
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	3e-65
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	2e-63
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	4e-65
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	2e-64
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	3e-60
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	2e-59
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	4e-51
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	6e-51
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	6e-48
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	1e-47
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	2e-47
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	2e-47
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	2e-47
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	3e-47
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	3e-42
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	2e-41
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	2e-26
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	3e-26
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	2e-24
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	6e-24
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	2e-23
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	3e-21
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	2e-22
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	4e-21
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	1e-21
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	3e-19
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	4e-21
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	1e-19
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	6e-21
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	2e-18
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	3e-20
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	5e-18
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	3e-19
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	8e-18
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	1e-17
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	3e-15
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	1e-17
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	1e-17
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	3e-17
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	3e-17
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	4e-17
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	7e-17
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	3e-12
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	3e-12
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	2e-05
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	2e-05
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-05
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-05
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	5e-05
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	5e-05
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	1e-04
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	2e-04
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	4e-04
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	4e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	6e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	7e-04

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score =  228 bits (584), Expect = 3e-74
 Identities = 94/126 (74%), Positives = 109/126 (86%)

Query: 236 ASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND 295
            +  + F S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF D
Sbjct: 14  GTENLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGD 73

Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
           RLEEF  INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL 
Sbjct: 74  RLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLE 133

Query: 356 DQGHTL 361
           D GHTL
Sbjct: 134 DSGHTL 139

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score =  223 bits (570), Expect = 4e-72
 Identities = 92/122 (75%), Positives = 106/122 (86%), Gaps = 1/122 (0%)

Query: 53  LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
            S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 21  QSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 80

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D G  +R
Sbjct: 81  INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 140

Query: 172 GS 173
           G 
Sbjct: 141 GL 142

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score =  227 bits (582), Expect = 9e-74
 Identities = 66/121 (54%), Positives = 89/121 (73%)

Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
              ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF
Sbjct: 40  LLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEF 99

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           +  N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+ 
Sbjct: 100 NSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNA 159

Query: 361 L 361
            
Sbjct: 160 F 160

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score =  223 bits (570), Expect = 6e-72
 Identities = 68/121 (56%), Positives = 90/121 (74%), Gaps = 1/121 (0%)

Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+  
Sbjct: 43  NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR 102

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
           N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G   RG
Sbjct: 103 NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRG 162

Query: 173 S 173
            
Sbjct: 163 L 163

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score =  228 bits (583), Expect = 1e-73
 Identities = 94/121 (77%), Positives = 107/121 (88%)

Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
             +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF
Sbjct: 48  AKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEF 107

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
             INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHT
Sbjct: 108 RAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHT 167

Query: 361 L 361
           L
Sbjct: 168 L 168

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score =  223 bits (571), Expect = 8e-72
 Identities = 93/122 (76%), Positives = 107/122 (87%), Gaps = 1/122 (0%)

Query: 53  LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
           +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF  
Sbjct: 50  ISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA 109

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
           INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQG  +R
Sbjct: 110 INTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 169

Query: 172 GS 173
           G 
Sbjct: 170 GL 171

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score =  227 bits (580), Expect = 2e-73
 Identities = 81/121 (66%), Positives = 96/121 (79%)

Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
           P V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EF
Sbjct: 27  PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEF 86

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           H +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  
Sbjct: 87  HDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLA 146

Query: 361 L 361
           L
Sbjct: 147 L 147

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score =  222 bits (567), Expect = 2e-71
 Identities = 80/121 (66%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
           ++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EFH +
Sbjct: 30  TQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV 89

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
           N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  +RG
Sbjct: 90  NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 149

Query: 173 S 173
            
Sbjct: 150 L 150

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score =  227 bits (580), Expect = 2e-73
 Identities = 62/130 (47%), Positives = 84/130 (64%)

Query: 232 MYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEIL 291
           +    S  +  V K AP ++ TAVVDG   E+ L  Y GKY+V  F PL FTFV PTEI+
Sbjct: 14  LVPRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEII 73

Query: 292 AFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351
           AF++  ++F +   +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D  H +S DYG
Sbjct: 74  AFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYG 133

Query: 352 VYLSDQGHTL 361
           V + ++G  L
Sbjct: 134 VLIEEEGVAL 143

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score =  221 bits (565), Expect = 2e-71
 Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%)

Query: 53  LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
           + K AP ++ TAVVDG   E+ L  Y GKY+V  F PL FTFV PTEI+AF++  ++F +
Sbjct: 25  VQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE 84

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
              +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D  H +S DYGV + ++G  +R
Sbjct: 85  QGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALR 144

Query: 172 GS 173
           G 
Sbjct: 145 GL 146

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score =  228 bits (582), Expect = 3e-73
 Identities = 94/121 (77%), Positives = 108/121 (89%)

Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
             +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF
Sbjct: 62  AKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEF 121

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHT
Sbjct: 122 RSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHT 181

Query: 361 L 361
           L
Sbjct: 182 L 182

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score =  223 bits (569), Expect = 2e-71
 Identities = 93/122 (76%), Positives = 108/122 (88%), Gaps = 1/122 (0%)

Query: 53  LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 64  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 123

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D G  +R
Sbjct: 124 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 183

Query: 172 GS 173
           G 
Sbjct: 184 GL 185

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score =  223 bits (570), Expect = 2e-72
 Identities = 59/126 (46%), Positives = 83/126 (65%), Gaps = 1/126 (0%)

Query: 237 SRAIPFVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND 295
           S     ++ PAP +   A++ +G  K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D
Sbjct: 2   SCGAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSD 61

Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
             + F +INTEV++ S DS ++HL W +  RK+GGLG + IP+L+D T  I+  YGV   
Sbjct: 62  DAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDE 121

Query: 356 DQGHTL 361
           D G   
Sbjct: 122 DSGVAY 127

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score =  217 bits (555), Expect = 4e-70
 Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 2/123 (1%)

Query: 53  LSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
           L+ PAP +   A++ +G  K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D  + F 
Sbjct: 8   LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFA 67

Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PV 170
           +INTEV++ S DS ++HL W +  RK+GGLG + IP+L+D T  I+  YGV   D G   
Sbjct: 68  EINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAY 127

Query: 171 RGS 173
           RG 
Sbjct: 128 RGV 130

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score =  222 bits (568), Expect = 7e-72
 Identities = 59/121 (48%), Positives = 81/121 (66%), Gaps = 1/121 (0%)

Query: 242 FVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
               PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF
Sbjct: 7   EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEF 66

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
             I  EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G  
Sbjct: 67  SDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVA 126

Query: 361 L 361
            
Sbjct: 127 Y 127

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score =  218 bits (557), Expect = 3e-70
 Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 2/122 (1%)

Query: 54  SKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
             PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  
Sbjct: 9   LHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD 68

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
           I  EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G   R
Sbjct: 69  IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYR 128

Query: 172 GS 173
           G 
Sbjct: 129 GL 130

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score =  211 bits (539), Expect = 9e-68
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
            ++     ++  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  
Sbjct: 2   LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ 61

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           ++  +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   
Sbjct: 62  KLGVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLAD 118

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score =  207 bits (528), Expect = 5e-66
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
                ++  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  ++ 
Sbjct: 5   TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG 64

Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGS 173
            +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   R +
Sbjct: 65  VDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRAT 121

Query: 174 LL 175
            +
Sbjct: 122 FV 123

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score =  211 bits (539), Expect = 3e-67
 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 241 PFVSKPAPFWQGTAV-VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLE 298
             V+K A  +    +  + ++  + LS + G KY    FYPL++TFVCPTEI+ FN  ++
Sbjct: 25  SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIK 84

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           +F   N E++  SVDS ++HLAW N P ++GG+G ++  L+SD+   IS +Y V L D  
Sbjct: 85  DFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV-LYDNS 143

Query: 359 HTL 361
             L
Sbjct: 144 FAL 146

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score =  207 bits (528), Expect = 1e-65
 Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 2/121 (1%)

Query: 55  KPAPFWQGTAV-VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
           K A  +    +  + ++  + LS + G KY    FYPL++TFVCPTEI+ FN  +++F  
Sbjct: 29  KKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN 88

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
            N E++  SVDS ++HLAW N P ++GG+G ++  L+SD+   IS +Y V   +   +RG
Sbjct: 89  KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRG 148

Query: 173 S 173
            
Sbjct: 149 L 149

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score =  210 bits (536), Expect = 3e-67
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 3/121 (2%)

Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
               AP ++  AV  D    E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A +  L+ F
Sbjct: 2   FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
            + N E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V L ++   
Sbjct: 62  KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVA 120

Query: 361 L 361
           L
Sbjct: 121 L 121

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score =  209 bits (534), Expect = 6e-67
 Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 53  LSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
               AP ++  AV  D    E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A +  L+ F
Sbjct: 2   FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61

Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
            + N E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V  ++   +
Sbjct: 62  KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVAL 121

Query: 171 RGS 173
           R  
Sbjct: 122 RAF 124

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score =  210 bits (536), Expect = 6e-67
 Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 3/123 (2%)

Query: 241 PFVSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLE 298
            +V K APF++  AV  D    E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A +  L+
Sbjct: 21  TYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALD 80

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
            FH+ N E++  SVDS +THLAW  TP  +GG+G +K  LLSD+T  IS DY V   D  
Sbjct: 81  AFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDS 139

Query: 359 HTL 361
            +L
Sbjct: 140 VSL 142

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score =  208 bits (532), Expect = 2e-66
 Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%)

Query: 55  KPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
           K APF++  AV  D    E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A +  L+ FH+
Sbjct: 25  KEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE 84

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
            N E++  SVDS +THLAW  TP  +GG+G +K  LLSD+T  IS DY V   D   +R 
Sbjct: 85  RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRA 144

Query: 173 S 173
            
Sbjct: 145 F 145

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score =  204 bits (522), Expect = 3e-65
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 242 FVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
            +      ++  A   G+   E+  +D  GK+ +  FYP DF+FVCPTE+        E 
Sbjct: 2   LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAEL 61

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
            ++  EV + S D+HF H AW         +G ++  ++ D +  IS  + V   + G  
Sbjct: 62  KKLGVEVYSVSTDTHFVHKAWHENS---PAVGSIEYIMIGDPSQTISRQFDVLNEETGLA 118

Query: 361 L 361
            
Sbjct: 119 D 119

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score =  200 bits (511), Expect = 2e-63
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 55  KPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
                ++  A   G+   E+  +D  GK+ +  FYP DF+FVCPTE+        E  ++
Sbjct: 5   TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL 64

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
             EV + S D+HF H AW         +G ++  ++ D +  IS  + V   + G   RG
Sbjct: 65  GVEVYSVSTDTHFVHKAWHENS---PAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121

Query: 173 SLL 175
           + +
Sbjct: 122 TFI 124

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score =  205 bits (523), Expect = 4e-65
 Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 4/122 (3%)

Query: 243 VSKPAPFWQGTAVVDGQL--KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEE 299
           V+K AP ++  AV+      +  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R+++
Sbjct: 3   VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKD 62

Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 359
           FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   ++  
Sbjct: 63  FHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-EEAI 121

Query: 360 TL 361
            L
Sbjct: 122 AL 123

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score =  202 bits (517), Expect = 2e-64
 Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 3/122 (2%)

Query: 55  KPAPFWQGTAVVDGQL--KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
           K AP ++  AV+      +  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R+++FH
Sbjct: 5   KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH 64

Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVR 171
           +    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   +   +R
Sbjct: 65  EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALR 124

Query: 172 GS 173
           G+
Sbjct: 125 GA 126

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score =  192 bits (490), Expect = 3e-60
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 239 AIPFVSKPAPFWQGTAVVDGQL------------KEIKLSDYYGKYLVFFFYPLDFTFVC 286
            +  +    P +Q TA++ G L              I   ++ GK+ V FF+P DFTFVC
Sbjct: 2   PLLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVC 61

Query: 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346
           PTEI AF+   +EF   + +++  S+DS F H  W     +   L  L  P+LSD+  ++
Sbjct: 62  PTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKREL 118

Query: 347 SLDYGVYLSDQGHTL 361
           S   GV L+  G   
Sbjct: 119 SQAAGV-LNADGVAD 132

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score =  190 bits (484), Expect = 2e-59
 Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 15/133 (11%)

Query: 55  KPAPFWQGTAVVDGQL------------KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILA 102
              P +Q TA++ G L              I   ++ GK+ V FF+P DFTFVCPTEI A
Sbjct: 8   DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAA 67

Query: 103 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
           F+   +EF   + +++  S+DS F H  W     +   L  L  P+LSD+  ++S   GV
Sbjct: 68  FSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELSQAAGV 124

Query: 163 YLSDQGPVRGSLL 175
             +D    R + +
Sbjct: 125 LNADGVADRVTFI 137

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  169 bits (431), Expect = 4e-51
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 52  NLSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
           +L    P +   A       + +L  Y    + + F +P DFT VC TE+       E+F
Sbjct: 4   HLGATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 61

Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
            ++N +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +  +
Sbjct: 62  LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121

Query: 171 RGSLLST-AIFV 181
            G  L+   +F 
Sbjct: 122 TGLPLTCRCLFF 133

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  168 bits (429), Expect = 6e-51
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +    P +   A       + +L  Y    + + F +P DFT VC TE+       E+F 
Sbjct: 5   LGATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFL 62

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           ++N +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +   
Sbjct: 63  KLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  162 bits (411), Expect = 6e-48
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 8/123 (6%)

Query: 239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFND 295
           +IP + +  P  + T         IKL D+Y   GK+ V F +P DFT VC TE ++F  
Sbjct: 3   SIPLIGERFPEMEVTTD----HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFAR 58

Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
           R E+F ++  +++  SVDS F+H+ W     +  G+ ++  P+++D    ++   G+  +
Sbjct: 59  RYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHA 117

Query: 356 DQG 358
           +  
Sbjct: 118 ESA 120

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  161 bits (410), Expect = 1e-47
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 10/125 (8%)

Query: 53  LSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEE 109
           + +  P  + T         IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+
Sbjct: 7   IGERFPEMEVTTD----HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYED 62

Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP 169
           F ++  +++  SVDS F+H+ W     +  G+ ++  P+++D    ++   G+  ++   
Sbjct: 63  FQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESAT 121

Query: 170 --VRG 172
             VRG
Sbjct: 122 HTVRG 126

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  160 bits (406), Expect = 2e-47
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +   AP ++    V      I+  D+ G  + + F +P DFT VC TE+        EF 
Sbjct: 7   LGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 62

Query: 302 QINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           + N +++A S+DS   HLAW    N    E    KL  P++ D   ++++  G+    + 
Sbjct: 63  KRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 122

Query: 359 HT 360
             
Sbjct: 123 DE 124

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  160 bits (406), Expect = 2e-47
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 52  NLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
            L   AP ++    V      I+  D+ G  + + F +P DFT VC TE+        EF
Sbjct: 6   LLGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 61

Query: 111 HQINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 167
            + N +++A S+DS   HLAW    N    E    KL  P++ D   ++++  G+    +
Sbjct: 62  AKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 121

Query: 168 GPVRGSLLST-AIFV 181
              +G  ++   +FV
Sbjct: 122 KDEKGMPVTARVVFV 136

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  160 bits (406), Expect = 2e-47
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           + +  P ++  + +     ++K  D+ G  + V F +P DFT V  TE+        +F 
Sbjct: 5   LGEVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFK 60

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           +   +++A S D+   H  W    +   G+ G +  P+++D T ++++  G+   D+  +
Sbjct: 61  KRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTS 120

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  160 bits (406), Expect = 3e-47
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 52  NLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
            L +  P ++  + +     ++K  D+ G  + V F +P DFT V  TE+        +F
Sbjct: 4   TLGEVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDF 59

Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGP 169
            +   +++A S D+   H  W    +   G+ G +  P+++D T ++++  G+   D+  
Sbjct: 60  KKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERT 119

Query: 170 VRGSLLST-AIFV 181
             G  L+  A+F+
Sbjct: 120 STGMPLTCRAVFI 132

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score =  144 bits (365), Expect = 3e-42
 Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
           V   AP F     + D   + + L  Y G K ++  F+PL FT +C  E+    D L EF
Sbjct: 11  VGATAPDF----TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEF 66

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG 358
              ++  +A SV    TH  W               PLLSD      +S  YGV+    G
Sbjct: 67  ENDDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAG 119

Query: 359 HTL 361
              
Sbjct: 120 IAN 122

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score =  142 bits (360), Expect = 2e-41
 Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 16/123 (13%)

Query: 55  KPAP-FWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
             AP F     + D   + + L  Y G K ++  F+PL FT +C  E+    D L EF  
Sbjct: 13  ATAPDF----TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN 68

Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG-P 169
            ++  +A SV    TH  W               PLLSD      +S  YGV+    G  
Sbjct: 69  DDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIA 121

Query: 170 VRG 172
            RG
Sbjct: 122 NRG 124

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score =  102 bits (256), Expect = 2e-26
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           + + AP F     + D +LK++KLS   GK +V  FYP  FT VC  E+  F D + +F+
Sbjct: 6   IGELAPDF----ELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFN 61

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           Q+N  V+  SVD  F++ A+            L   +LSD   ++   Y V 
Sbjct: 62  QVNAVVLGISVDPPFSNKAFKE---HNK----LNFTILSDYNREVVKKYNVA 106

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score =  101 bits (255), Expect = 3e-26
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 67  DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 126
           D +LK++KLS   GK +V  FYP  FT VC  E+  F D + +F+Q+N  V+  SVD  F
Sbjct: 17  DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76

Query: 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           ++ A+            L   +LSD   ++   Y V 
Sbjct: 77  SNKAFKE---HNK----LNFTILSDYNREVVKKYNVA 106

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score = 96.9 bits (242), Expect = 2e-24
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 67  DGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +   + + L +    G+  V  F+P  F+ VC  E+  F D++ +  + N EV+A SVDS
Sbjct: 18  NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
            +    + +   +      L   LLSD   ++   Y VY  D   ++ 
Sbjct: 78  PWCLKKFKD---ENR----LAFNLLSDYNREVIKLYNVYHEDLKGLKM 118

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score = 95.8 bits (239), Expect = 6e-24
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 257 DGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           +   + + L +    G+  V  F+P  F+ VC  E+  F D++ +  + N EV+A SVDS
Sbjct: 18  NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 359
            +    + +   +      L   LLSD   ++   Y VY  D   
Sbjct: 78  PWCLKKFKD---ENR----LAFNLLSDYNREVIKLYNVYHEDLKG 115

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           VV   L+E  +        V    P   T VC TE   FN+ +        +V   S+D 
Sbjct: 32  VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    +  +           + + SD  ++    YGV + + G ++G +L+ A+F+
Sbjct: 90  PFAQKRFCES------FNIQNVTVASDFRYRDMEKYGVLIGE-GALKG-ILARAVFI 138

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score = 88.5 bits (220), Expect = 3e-21
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           VV   L+E  +        V    P   T VC TE   FN+ +        +V   S+D 
Sbjct: 32  VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
            F    +  +           + + SD  ++    YGV + +
Sbjct: 90  PFAQKRFCES------FNIQNVTVASDFRYRDMEKYGVLIGE 125

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +    L +  L+D+ GK  V    P   T +C T+   FN+ L      NT V+  S+D 
Sbjct: 27  LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    W       G  G     +LSD   H    DY + +++       LL+ A+FV
Sbjct: 85  PFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWH-----LLARAVFV 131

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score = 88.1 bits (219), Expect = 4e-21
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           +    L +  L+D+ GK  V    P   T +C T+   FN+ L      NT V+  S+D 
Sbjct: 27  LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
            F    W       G  G     +LSD   H    DY + +++  
Sbjct: 85  PFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWH 123

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +  G L  I    + GK ++   +P   T VC T +  F++           V+  S D 
Sbjct: 29  LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDL 85

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    +       G  G   +   S        DYGV ++D GP+ G LL+ AI V
Sbjct: 86  PFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIAD-GPMAG-LLARAIVV 134

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score = 83.5 bits (207), Expect = 3e-19
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 241 PFVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE 299
           P V  PAP F     +  G L  I    + GK ++   +P   T VC T +  F++    
Sbjct: 18  PAVGSPAPAF----TLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---R 70

Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
                  V+  S D  F    +       G  G   +   S        DYGV ++D
Sbjct: 71  AAASGATVLCVSKDLPFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIAD 121

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score = 88.4 bits (220), Expect = 4e-21
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           V+D  L ++ L+DY GK  +    P   T VC  +   FN    +       V+  S D 
Sbjct: 31  VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EGIVLTISADL 87

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    W          G   +  LSD        +YGV + +       LL+ A+FV
Sbjct: 88  PFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELR-----LLARAVFV 134

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           V+D  L ++ L+DY GK  +    P   T VC  +   FN    +       V+  S D 
Sbjct: 31  VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EGIVLTISADL 87

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQG 358
            F    W          G   +  LSD        +YGV + +  
Sbjct: 88  PFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELR 126

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200

 Score = 88.6 bits (220), Expect = 6e-21
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +V   L ++ LS + GK  V   +P   T VC   +  FN    E    NT V+  S D 
Sbjct: 63  LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    +          G   +  LS L        YGV +++ GP+ G L + A+ V
Sbjct: 121 PFAQSRFCGA------EGLSNVITLSTLRGADFKQAYGVAITE-GPLAG-LTARAVVV 170

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           +V   L ++ LS + GK  V   +P   T VC   +  FN    E    NT V+  S D 
Sbjct: 63  LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD 356
            F    +          G   +  LS L        YGV +++
Sbjct: 121 PFAQSRFCGA------EGLSNVITLSTLRGADFKQAYGVAITE 157

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165

 Score = 85.8 bits (213), Expect = 3e-20
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +V   L ++ L+D+  K  V   +P   T VC T +  FN +  +    NT V+  S D 
Sbjct: 28  LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    +          G      +S    H +    GV +   GP+ G L S A+ V
Sbjct: 86  PFAQARFCGA------EGIENAKTVSTFRNHALHSQLGVDIQT-GPLAG-LTSRAVIV 135

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           +V   L ++ L+D+  K  V   +P   T VC T +  FN +  +    NT V+  S D 
Sbjct: 28  LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
            F    +          G      +S    H +    GV +    
Sbjct: 86  PFAQARFCGA------EGIENAKTVSTFRNHALHSQLGVDIQTGP 124

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 14/118 (11%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           V+   L+E  L+D  GK  +    P   T VC  +   FN+   +    +  V   S D 
Sbjct: 29  VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
            F    W        G+   K+  LSD         +GVY+ +       LL+ ++FV
Sbjct: 87  PFAQARW----CGANGID--KVETLSDHRDMSFGEAFGVYIKELR-----LLARSVFV 133

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score = 79.2 bits (196), Expect = 8e-18
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           V+   L+E  L+D  GK  +    P   T VC  +   FN+   +    +  V   S D 
Sbjct: 29  VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
            F    W        G+   K+  LSD         +GVY+ +  
Sbjct: 87  PFAQARW----CGANGID--KVETLSDHRDMSFGEAFGVYIKELR 125

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224

 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +VD Q  +  L  +     +               +L    R       + +++  +VDS
Sbjct: 33  LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGPVRGSLLSTAIFV 181
             +     +        G   I LLS L  +     YGV +++  P+ G   S AI +
Sbjct: 93  PSSLARARHE------HGLPNIALLSTLRGRDFHKRYGVLITE-YPLSG-YTSPAIIL 142

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224

 Score = 73.4 bits (180), Expect = 3e-15
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
           +VD Q  +  L  +     +               +L    R       + +++  +VDS
Sbjct: 33  LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92

Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD 356
             +     +        G   I LLS L  +     YGV +++
Sbjct: 93  PSSLARARHE------HGLPNIALLSTLRGRDFHKRYGVLITE 129

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 71  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
            +  L  + G +LV +FYP D T    TE L FN  L EF +   +++  S DS  +H  
Sbjct: 26  TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85

Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           +     K+G       PL+SD    +   + V 
Sbjct: 86  FCA---KQG----FAFPLVSDGDEALCRAFDVI 111

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
            +  L  + G +LV +FYP D T    TE L FN  L EF +   +++  S DS  +H  
Sbjct: 26  TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85

Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +     K+G       PL+SD    +   + V 
Sbjct: 86  FCA---KQG----FAFPLVSDGDEALCRAFDVI 111

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 71  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
               LSDY  ++LV +FYP D T    TE L FN  L +F QIN  V+  S DS  +H +
Sbjct: 42  TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101

Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           +     K+G       PL+SD    +   + V 
Sbjct: 102 FCA---KQG----FTFPLVSDSDAILCKAFDVI 127

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
               LSDY  ++LV +FYP D T    TE L FN  L +F QIN  V+  S DS  +H +
Sbjct: 42  TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101

Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           +     K+G       PL+SD    +   + V 
Sbjct: 102 FCA---KQG----FTFPLVSDSDAILCKAFDVI 127

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161

 Score = 77.3 bits (191), Expect = 4e-17
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 71  KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
           ++I LSDY GK+ +V +FYP D T     E  AF D  +     +  V+  S D   +H 
Sbjct: 19  EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78

Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVR 171
            +     K      L   L+SD   KI   YG       P R
Sbjct: 79  RFKE---KYK----LPFILVSDPDKKIRELYGAKGFI-LPAR 112

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 261 KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
           ++I LSDY GK+ +V +FYP D T     E  AF D  +     +  V+  S D   +H 
Sbjct: 19  EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78

Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
            +     K      L   L+SD   KI   YG 
Sbjct: 79  RFKE---KYK----LPFILVSDPDKKIRELYGA 104

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 71  KEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128
             I L       + +VFF YP   T     +   F D  +E  +    V   S DS  + 
Sbjct: 24  DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 82

Query: 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
             + +   K+     L   LLSD   +     G 
Sbjct: 83  KKFQS---KQN----LPYHLLSDPKREFIGLLGA 109

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 261 KEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 318
             I L       + +VFF YP   T     +   F D  +E  +    V   S DS  + 
Sbjct: 24  DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 82

Query: 319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
             + +   K+     L   LLSD   +     G 
Sbjct: 83  KKFQS---KQN----LPYHLLSDPKREFIGLLGA 109

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLE 298
           + + AP +  T   DG  K++ LS   GK ++     L FT     VC  E+      + 
Sbjct: 9   IGEMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIW 60

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
             H+ N +     +D        +   +  G    +  PL  D    I   Y +  +
Sbjct: 61  LKHKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDA 113

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLEEF 110
           + AP +  T   DG  K++ LS   GK ++     L FT     VC  E+      +   
Sbjct: 11  EMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIWLK 62

Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 165
           H+ N +     +D        +   +  G    +  PL  D    I   Y +  +
Sbjct: 63  HKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDA 113

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV----CPTEILAFNDRLE 298
               AP   G  +  G    + L+D+ GKY++     +DF F     C  E         
Sbjct: 5   TGSVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYN 56

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
            F      +   S D       W     +E      ++ L  D    +   Y +
Sbjct: 57  AFKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI 107

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV----CPTEILAFNDRLEEF 110
             AP   G  +  G    + L+D+ GKY++     +DF F     C  E          F
Sbjct: 7   SVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYNAF 58

Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
                 +   S D       W     +E      ++ L  D    +   Y +
Sbjct: 59  KDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI 107

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 54  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 108
           +  A  +    + +G  K + L+D  GKY+      +D   T+ C     E+ A  +  E
Sbjct: 7   NPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKELEE 57

Query: 109 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
           ++   +   V+ S D      AW N   K+   G   I L           Y +
Sbjct: 58  KYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI 106

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 298
           +  A  +    + +G  K + L+D  GKY+      +D   T+ C     E+ A  +  E
Sbjct: 7   NPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKELEE 57

Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
           ++   +   V+ S D      AW N   K+   G   I L           Y +
Sbjct: 58  KYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI 106

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 297
               AP +       G    +KLSD  G  +      LDF  ++ C          N   
Sbjct: 5   KGDKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQ 54

Query: 298 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
            ++     +VVA ++D+       +    +       +  +  D   +    YGV 
Sbjct: 55  AKYKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGVK 104

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 21/114 (18%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
             AP +       G    +KLSD  G  +      LDF  ++ C          N    +
Sbjct: 7   DKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQAK 56

Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           +     +VVA ++D+       +    +       +  +  D   +    YGV 
Sbjct: 57  YKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGVK 104

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
             AP +      +G  K I+LSD  GK +      L+F  T+ C     E     ++ + 
Sbjct: 4   SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54

Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
           F     E+VA +V    + +A  N  +  G    +  P++ D   ++   Y V 
Sbjct: 55  FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDVS 102

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)

Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 299
             AP +      +G  K I+LSD  GK +      L+F  T+ C     E     ++ + 
Sbjct: 4   SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54

Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
           F     E+VA +V    + +A  N  +  G    +  P++ D   ++   Y V 
Sbjct: 55  FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDVS 102

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 21/118 (17%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 297
           + K AP    T    G      L D   KY + FF+            C  E     D  
Sbjct: 7   LGKKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWW 57

Query: 298 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH--KISLDYGVY 353
            +      +V AA+++       W+   R +   G      + D  +     + Y +Y
Sbjct: 58  LKNRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDIY 110

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 21/116 (18%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEE 109
           K AP    T    G      L D   KY + FF+            C  E     D   +
Sbjct: 9   KKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWWLK 59

Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH--KISLDYGVY 163
                 +V AA+++       W+   R +   G      + D  +     + Y +Y
Sbjct: 60  NRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDIY 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.98
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.97
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.97
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.96
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.96
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.96
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.96
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.95
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.95
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.95
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.95
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.95
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.95
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.95
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.95
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.95
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.94
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.94
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.94
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.94
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.94
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.94
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.94
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.94
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.94
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.94
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.94
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.94
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.94
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.94
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.94
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.94
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.94
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.94
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.94
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.94
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.94
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.94
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.93
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.93
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.93
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.93
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.93
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.93
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.93
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.93
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.93
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.93
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.93
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.93
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.93
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.93
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.93
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.93
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.93
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.93
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.92
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.92
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.92
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.92
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.92
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.92
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.92
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.92
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.92
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.92
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.92
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.92
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.92
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.92
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.91
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.91
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.91
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.91
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.91
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.91
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.91
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.91
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.91
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.91
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.91
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.91
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.91
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.9
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.9
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.9
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.9
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.9
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.9
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.9
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.9
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.9
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.9
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.9
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.89
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.89
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.89
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.89
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.89
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.89
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.89
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.89
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.89
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.89
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.89
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.89
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.89
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.88
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.88
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.88
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.88
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.88
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.88
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.88
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.88
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.88
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.88
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.87
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.87
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.87
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.87
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.87
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.87
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.87
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.87
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.87
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.87
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.87
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.87
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.87
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.87
3me7_A	170	Putative uncharacterized protein; electron transfe	99.87
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.87
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.87
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.87
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.87
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.87
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.87
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.86
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.86
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.86
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.86
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.86
3me7_A	170	Putative uncharacterized protein; electron transfe	99.86
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.86
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.86
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.86
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.86
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.86
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.86
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.86
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.86
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.86
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.86
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.86
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.86
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.86
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.86
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.85
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.85
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.85
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.85
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.85
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.85
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.85
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.85
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.85
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.85
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.85
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.85
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.84
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.84
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.84
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.84
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.84
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.84
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.84
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.84
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.84
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.84
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.84
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.84
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.74
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.84
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.73
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.83
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.83
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.83
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.83
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.83
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.82
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.82
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.82
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.82
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.81
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.81
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.81
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.8
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.8
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.8
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.8
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.8
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.79
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.79
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.78
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.78
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.77
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.64
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.76
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.58
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.68
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.58
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.41
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.38
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.36
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.31
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.3
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.28
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.24
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.23
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.23
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.23
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.2
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.19
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.16
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.16
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.16
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.09
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.09
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.08
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.07
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.06
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.02
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.01
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.0
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.99
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.99
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.99
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.99
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.98
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.98
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.97
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.95
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.94
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.94
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.93
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.93
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.93
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.92
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.91
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.9
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.9
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.9
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.89
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.89
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.89
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.88
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.88
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.88
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.87
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.87
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.87
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.87
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.87
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.87
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.87
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.87
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.86
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.86
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.86
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.85
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.85
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.85
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.85
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.85
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.85
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.84
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.84
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.84
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.83
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.83
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.83
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.33
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.82
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.81
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.81
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.8
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.8
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.8
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.8
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.8
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.79
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.79
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.79
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.79
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.78
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.75
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.75
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.74
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.74
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.73
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.72
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.72
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.72
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.71
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.71
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.7
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.7
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.7
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.69
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.15
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.69
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.68
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.68
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.68
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.68
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.68
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.68
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.66
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.66
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.66
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.65
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.64
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.63
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.63
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.62
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.62
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.62
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.62
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.62
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.61
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.6
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.59
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.59
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.58
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.57
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.57
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.57
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.57
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.57
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.56
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.56
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.56
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.56
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.55
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.55
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.55
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.55
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.54
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.54
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.54
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.54
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.53
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.53
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.53
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.53
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.53
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.52
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.52
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.9
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.51
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.5
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.5
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.49
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.49
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.48
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.48
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.48
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.47
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.47
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.47
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.46
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.46
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.45
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.45
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.44
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.44
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.43
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.43
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.43
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.41
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.39
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.38
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.37
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.37
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.36
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.7
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.33
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.33
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.32
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.32
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.3
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.3
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.29
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.29
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.25
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.24
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.22
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.21
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.21
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.21
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.21
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.2
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.19
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.17
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.16
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.13
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.13
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.1
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.08
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.02
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.01
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.99
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.95
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.94
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.94
3ira_A	173	Conserved protein; methanosarcina mazei,structural	97.94
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.92
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.91
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.89
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	97.84
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.84
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.83
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.81
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.78
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.73
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.63
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.61
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.6
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.59
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.54
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.53
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.52
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	97.51
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.51
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.49
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.47
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.47
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.41
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.35
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.34
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.26
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.11
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.02
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.01
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	97.0
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.98
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.85
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	96.79
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	96.78
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	96.74
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	96.67
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	96.64
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	96.53
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	96.44
1ttz_A	87	Conserved hypothetical protein; structural genomic	96.38
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.35
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	96.25
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.25
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	95.93
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	95.89
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.88
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.8
1z6m_A	175	Conserved hypothetical protein; structural genomic	95.62
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	95.59
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	95.57
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	95.44
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	95.3
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	95.27
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	95.27
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	95.22
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	95.19
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	95.09
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	95.06
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.97
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	94.88
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	94.83
1ttz_A	87	Conserved hypothetical protein; structural genomic	94.77
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	94.68
1kte_A	105	Thioltransferase; redox-active center, electron tr	94.57
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	94.29
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	94.2
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	94.19
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	94.15
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	93.98
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	93.46
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	93.16
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	92.82
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	92.79
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	92.58
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	92.55
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	92.48
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	92.25
1kte_A	105	Thioltransferase; redox-active center, electron tr	92.11
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	91.99
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	91.43

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.1e-32  Score=240.45  Aligned_cols=156  Identities=40%  Similarity=0.697  Sum_probs=136.8

Q ss_pred             ccccccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         45 CTTFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        45 ~~~~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ....+.+++|++||||+++.+.|+++++++|+||+||++||+|||++|||+|..|++.|++.+++|++.|++|++||.|+
T Consensus        17 ~~~~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds   96 (216)
T 3sbc_A           17 RGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDS   96 (216)
T ss_dssp             -----CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCcchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCc
Confidence            34456788999999999998778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      .+.+++|.+..++..+.++++||+++|++++++++||++.++.|     ...|++||||++|+||..   .+++...||+
T Consensus        97 ~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g-----~~~R~tFiID~~G~Ir~~---~v~~~~~grn  168 (216)
T 3sbc_A           97 EYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEG-----VALRGLFIIDPKGVIRHI---TINDLPVGRN  168 (216)
T ss_dssp             HHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTT-----EECEEEEEECTTSBEEEE---EEECTTBCCC
T ss_pred             hhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCC-----ceeeEEEEECCCCeEEEE---EEcCCCCCCC
Confidence            99999999887666566678999999999999999999887755     556999999999999754   5788888988


Q ss_pred             ceee
Q psy17178        205 WIRH  208 (384)
Q Consensus       205 wk~~  208 (384)
                      ....
T Consensus       169 ~dEi  172 (216)
T 3sbc_A          169 VDEA  172 (216)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.97  E-value=1.2e-31  Score=227.92  Aligned_cols=135  Identities=30%  Similarity=0.428  Sum_probs=114.6

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      ++++|++||+|++++.   +|++++|++++||++||+||+++|||+|+.|+|.|+++++++++.|+++++||.|+++.++
T Consensus         3 ~l~vG~~aPdF~l~~~---~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~   79 (157)
T 4g2e_A            3 MVEIGELAPDFELPDT---ELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNK   79 (157)
T ss_dssp             CCCTTSBCCCCEEEBT---TSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHH
T ss_pred             cCCCCCCCcCeEeECC---CCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHH
Confidence            5789999999999877   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +|.+..       +++||+++|.+++++++|||.....+........|++||||++|+|++...+
T Consensus        80 ~~~~~~-------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~  137 (157)
T 4g2e_A           80 AFKEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVS  137 (157)
T ss_dssp             HHHHHT-------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHc-------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEEC
Confidence            998843       8899999999999999999976654433333556899999999999866544

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.97  E-value=2.9e-30  Score=228.33  Aligned_cols=150  Identities=41%  Similarity=0.786  Sum_probs=131.6

Q ss_pred             cccCCCCCCccEEEeee-cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~-~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .+++|++||+|+++++. |++|++++|+||+||++||+|||++|||+|..|++.|++.+++|++.|++|++||.|+.+++
T Consensus        25 ~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh  104 (219)
T 3tue_A           25 NAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAH  104 (219)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             ccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhH
Confidence            45799999999987643 67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIR  207 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~  207 (384)
                      ++|.+...+..+..+++||+++|++++++++||++.+..|     ...|++||||++|+||.+   .+++...+|+...
T Consensus       105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g-----~~~R~tFiIDp~g~Ir~~---~~~~~~~gr~~~E  175 (219)
T 3tue_A          105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQG-----VAYRGLFIIDPHGMLRQI---TVNDMPVGRSVEE  175 (219)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEE---EEECTTCCCCHHH
T ss_pred             HHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCC-----eeEEEEEEECCCCeEEEE---EEecCCCCCCHHH
Confidence            9998765444455578999999999999999999877644     456899999999999754   4677888887554

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.3e-29  Score=220.33  Aligned_cols=141  Identities=45%  Similarity=0.744  Sum_probs=132.5

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+++|+++|+|+++.+.|+++++++|+||+||++||+|||+.|||+|..|++.|++.+++|++.|++|++||.|++..+.
T Consensus        22 ~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~  101 (216)
T 3sbc_A           22 VAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL  101 (216)
T ss_dssp             CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             hhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHH
Confidence            35799999999999887999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|.+..+...+..+++||+++|++++++++||++..+.|...|++||||++|+|+++..++
T Consensus       102 aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~  162 (216)
T 3sbc_A          102 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIND  162 (216)
T ss_dssp             HHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcC
Confidence            9999987777777899999999999999999999888888899999999999999987653

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.96  E-value=8.6e-30  Score=216.41  Aligned_cols=130  Identities=29%  Similarity=0.438  Sum_probs=113.2

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      ++++|+++|+|+++   |.+|++++|++++||++||+||+++|||+|+.|+|.|+++++++++.++.+++||.|+++.++
T Consensus         3 ~l~vG~~aPdF~l~---~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~   79 (157)
T 4g2e_A            3 MVEIGELAPDFELP---DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNK   79 (157)
T ss_dssp             CCCTTSBCCCCEEE---BTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHH
T ss_pred             cCCCCCCCcCeEeE---CCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHH
Confidence            46799999999998   569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC-----ceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-----HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~-----~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++++       +++||+++|++++++++||+.....+     ...|++||||++|+|++++..
T Consensus        80 ~~~~~~-------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~  137 (157)
T 4g2e_A           80 AFKEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVS  137 (157)
T ss_dssp             HHHHHT-------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHc-------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEEC
Confidence            999876       89999999999999999999754332     367899999999999998764

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.96  E-value=4.9e-31  Score=225.72  Aligned_cols=135  Identities=25%  Similarity=0.371  Sum_probs=118.2

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEcccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      .++++|++||+|++++.   +|++++|+++  +||++||+|||++|||+|+.|+|.|++++++|++.|+++++||.|+++
T Consensus         3 gml~vG~~aPdF~l~~~---~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~   79 (164)
T 4gqc_A            3 GLVELGEKAPDFTLPNQ---DFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPW   79 (164)
T ss_dssp             -CCCTTSBCCCCEEEBT---TSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHH
T ss_pred             CcccCCCCCcCcEeECC---CCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHH
Confidence            35789999999999877   9999999999  899999999999999999999999999999999999999999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      .+++|.+..       +++||+++|++++++++||++..+.+. ......|++||||++|+|++...+
T Consensus        80 ~~~~~~~~~-------~~~fp~l~D~~~~v~~~ygv~~~~~~~-~~~~~~p~tflID~~G~I~~~~~~  139 (164)
T 4gqc_A           80 CLKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKG-LKMVAKRAVFIVKPDGTVAYKWVT  139 (164)
T ss_dssp             HHHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEEEETT-EEEEECCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHhc-------CcccceeecCchHHHHHcCCccccccc-CcCCeeeEEEEECCCCEEEEEEEe
Confidence            999998843       889999999999999999997654221 122345789999999999865443

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.96  E-value=2.7e-28  Score=222.82  Aligned_cols=142  Identities=65%  Similarity=1.140  Sum_probs=126.9

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ...+.+|+++|+|+++++.|++|++++|++++||++||+||+++|||+|+.|++.|++++++|+++|++||+||.|+.+.
T Consensus        59 ~~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~  138 (254)
T 3tjj_A           59 LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFT  138 (254)
T ss_dssp             CCCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             ccccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHH
Confidence            35677999999999998778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +++|.+.++++.+.++++||+++|.+++++++||++....|     ...|++||||++|+|+....+
T Consensus       139 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g-----~~~p~tflID~~G~I~~~~~~  200 (254)
T 3tjj_A          139 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG-----HTLRGLFIIDDKGILRQITLN  200 (254)
T ss_dssp             HHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTT-----EECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCC-----CccceEEEECCCCeEEEEEec
Confidence            99999987666555578999999999999999999776533     456889999999999876443

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.95  E-value=2e-29  Score=215.75  Aligned_cols=131  Identities=24%  Similarity=0.387  Sum_probs=119.1

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeecccc--CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~--~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      ..++|+++|+|+++   |.+|++++|+|+  +||++||+||+++|||+|+.|+|.|++++++|++.|+.+++||.|+++.
T Consensus         4 ml~vG~~aPdF~l~---~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~   80 (164)
T 4gqc_A            4 LVELGEKAPDFTLP---NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC   80 (164)
T ss_dssp             CCCTTSBCCCCEEE---BTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHH
T ss_pred             cccCCCCCcCcEeE---CCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHH
Confidence            35799999999998   569999999998  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC----CceeeEEEEEeCCceEEEEEecC
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----GHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~----~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +++|.+++       +++||+++|++++++++||++..+.    +...|++||||++|+|++++...
T Consensus        81 ~~~~~~~~-------~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~  140 (164)
T 4gqc_A           81 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD  140 (164)
T ss_dssp             HHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS
T ss_pred             HHHHHHhc-------CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeC
Confidence            99999876       8999999999999999999976432    13578999999999999988643

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.95  E-value=9.8e-28  Score=212.13  Aligned_cols=139  Identities=42%  Similarity=0.769  Sum_probs=128.6

Q ss_pred             CCCCCCCCCceeeeE-EcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l-~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      ..+|+++|+|+++++ .|++|+.++|+||+||++||+||++.|||+|..|+..|++++++|++.|++|++||.|+.+.++
T Consensus        26 ~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~  105 (219)
T 3tue_A           26 AKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHL  105 (219)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHH
Confidence            479999999997653 3789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.++.+...+..+++||+++|++++++++||++....|...+++||||++|+|++++.+
T Consensus       106 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~  165 (219)
T 3tue_A          106 QWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVN  165 (219)
T ss_dssp             HHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEe
Confidence            999887666666689999999999999999999988888889999999999999998754

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.95  E-value=4.2e-28  Score=220.11  Aligned_cols=141  Identities=65%  Similarity=1.108  Sum_probs=125.6

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+.+|+++|+|+++++.|++|++++|++++||++||+||+++|||+|+.++|.|++++++|+++|+++|+||.|+.+.+
T Consensus        46 ~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~  125 (240)
T 3qpm_A           46 SKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTH  125 (240)
T ss_dssp             CSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            45789999999999987788899999999999999999998899999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++|.+.++++.+.++++||+++|.+++++++||+.....|     ...|++||||++|+|+....+
T Consensus       126 ~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g-----~~~p~~flID~~G~I~~~~~~  186 (240)
T 3qpm_A          126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQG-----HTLRGLFIIDEKGVLRQITMN  186 (240)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCC-----CccceEEEEcCCCeEEEEEec
Confidence            9999887655555578999999999999999999766533     456889999999999876543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.95  E-value=1.9e-27  Score=217.30  Aligned_cols=140  Identities=68%  Similarity=1.148  Sum_probs=129.7

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+.+|+|+++++.|.+|++++|+|++||++||+||+++|||+|+.|++.|++++++|+++|++||+||.|+++.++
T Consensus        61 ~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~  140 (254)
T 3tjj_A           61 KAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL  140 (254)
T ss_dssp             CCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             ccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHH
Confidence            34689999999999877889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++.++++.+..+++||++.|.++.++++||+.....|...|++||||++|+|++++..
T Consensus       141 ~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~  200 (254)
T 3tjj_A          141 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN  200 (254)
T ss_dssp             HHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEec
Confidence            999988777666579999999999999999999877767788999999999999998775

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.95  E-value=8e-28  Score=214.22  Aligned_cols=142  Identities=64%  Similarity=1.096  Sum_probs=122.8

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+.+|+++|+|+++++.|++|++++|++++||++||+|||++|||+|+.++|.|++++++|+++|+++|+||.|+++.+
T Consensus        17 ~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~   96 (211)
T 2pn8_A           17 NLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTH   96 (211)
T ss_dssp             --CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             ccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            45679999999999875566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+...++.+.++++||+++|.+++++++||+.....|     ...|++||||++|+|+....|.
T Consensus        97 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g-----~~~p~~~lID~~G~I~~~~~g~  158 (211)
T 2pn8_A           97 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG-----HTLRGLFIIDDKGILRQITLND  158 (211)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCC-----cccceEEEECCCCEEEEEEecC
Confidence            9999876444333367899999999999999999765432     3578999999999999776553

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.95  E-value=2.4e-27  Score=215.06  Aligned_cols=140  Identities=69%  Similarity=1.108  Sum_probs=128.7

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+++|+|+++++.|++|++++|+|++||++||+||+++|||+|+.++|.|++++++|+++|++||+||.|+++.++
T Consensus        47 ~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~  126 (240)
T 3qpm_A           47 KAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHL  126 (240)
T ss_dssp             SCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            35789999999999877888999999999999999999977999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++.++++.+..+++||++.|.+++++++||+.....|...|++||||++|+|++++..
T Consensus       127 ~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~  186 (240)
T 3qpm_A          127 AWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMN  186 (240)
T ss_dssp             HHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEec
Confidence            999988776655579999999999999999999877666688999999999999998765

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=210.29  Aligned_cols=140  Identities=68%  Similarity=1.154  Sum_probs=125.2

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+.+|+|+++++.|.+|+++++++++||++||+||+++|||+|+.++|.|++++++|++++++||+||.|+++.++
T Consensus        18 ~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~   97 (211)
T 2pn8_A           18 LYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL   97 (211)
T ss_dssp             -CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            35689999999999765678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++.++++.++.+++||++.|++++++++||+.....|...|++||||++|+|++++..
T Consensus        98 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g  157 (211)
T 2pn8_A           98 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN  157 (211)
T ss_dssp             HHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEec
Confidence            999987655444468999999999999999999765555679999999999999998854

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.95  E-value=3.1e-28  Score=209.78  Aligned_cols=142  Identities=22%  Similarity=0.243  Sum_probs=119.2

Q ss_pred             ccccCCCCCCccEEE-eeecCccceEEccc-cCCCeEEEEEeeCCCCCCch-HHHHHHHHhHHHHHhCCcEEEE-EeCCC
Q psy17178         49 YSKNLSKPAPFWQGT-AVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTEVVA-ASVDS  124 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~-~~~~~~g~~~~l~~-~~gk~vvl~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~v~vi~-Vs~d~  124 (384)
                      ..+++|++||+|+++ +.   +|++++|++ ++||++||+|||++|||+|+ .|+|.|++++++|+++|+++|+ ||.|+
T Consensus        13 ~~~~vG~~aPdf~l~~~~---~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~   89 (173)
T 3mng_A           13 APIKVGDAIPAVEVFEGE---PGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVND   89 (173)
T ss_dssp             CCCCTTCBCCCCEEECSS---TTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred             CCCCCCCCCCCeEeeeCC---CCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            356799999999998 66   899999999 59999999999999999999 5999999999999999999997 99999


Q ss_pred             HHhHHhhccCccccCCCCccc--eeEEeeCcchhHHhhcCcccCCCC--cccceeEEEEEEEecCCCcccccceeeeecc
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQGP--VRGSLLSTAIFVYALTSPVNGYAGGALYSRL  200 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~ygv~~~~~g~--~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~  200 (384)
                      ++.+++|.+..       +++  ||+++|++++++++||+..++.+.  ..+....|++|||| +|+|+....+   +..
T Consensus        90 ~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~---~~~  158 (173)
T 3mng_A           90 AFVTGEWGRAH-------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVE---PDG  158 (173)
T ss_dssp             HHHHHHHHHHT-------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEEC---TTS
T ss_pred             HHHHHHHHHHh-------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEe---CCC
Confidence            99999999854       666  999999999999999997654210  11234568999999 9999876543   444


Q ss_pred             CCcc
Q psy17178        201 GGRA  204 (384)
Q Consensus       201 ~g~~  204 (384)
                      .|++
T Consensus       159 ~g~~  162 (173)
T 3mng_A          159 TGLT  162 (173)
T ss_dssp             SCSS
T ss_pred             CCcc
Confidence            4554

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.95  E-value=9.3e-28  Score=204.87  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=116.9

Q ss_pred             cccCCCCCCccEEEeeecCcc--ceEEccc-cCCCeEEEEEeeCCCCCCch-HHHHHHHHhHHHHHhCCcE-EEEEeCCC
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQL--KEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTE-VVAASVDS  124 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g--~~~~l~~-~~gk~vvl~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~v~-vi~Vs~d~  124 (384)
                      .+++|+++|+|+++. .+.+|  ++++|++ ++||++||+|||++|||+|+ .|+|.|++++++|+++|++ +++||.|+
T Consensus         3 ~~~~G~~aP~f~l~~-~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~   81 (162)
T 1tp9_A            3 PIAVGDVLPDGKLAY-FDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND   81 (162)
T ss_dssp             CCCTTCBCCCCEEEE-ECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             cCCCCCCCCCeEEEe-ecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence            567999999999862 14489  9999999 89999999999999999999 9999999999999999999 99999999


Q ss_pred             HHhHHhhccCccccCCCCcc--ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++.+++|.+..       ++  +||+++|.+++++++||+.........|....|++|||| +|+|++...|.
T Consensus        82 ~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A           82 PFVMKAWAKSY-------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             HHHHHHHHHTC-------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             HHHHHHHHHhc-------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence            99999999854       66  899999999999999999754211001234568899999 99999876654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.2e-27  Score=208.28  Aligned_cols=139  Identities=14%  Similarity=0.159  Sum_probs=118.2

Q ss_pred             cccccCCCCCCccEEEeeecCcc-ceEEccc-cCCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHHHhCCcE-EEEEeCC
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQL-KEIKLSD-YYGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINTE-VVAASVD  123 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g-~~~~l~~-~~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~v~-vi~Vs~d  123 (384)
                      .+++++|+++|+|+++++ ..+| ++++|++ ++||++||+||+++|||+|+. |+|.|++++++|+++|++ |++||.|
T Consensus        23 ~~~l~vG~~aPdf~l~~~-~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d  101 (184)
T 3uma_A           23 MMTIAVGDKLPNATFKEK-TADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVN  101 (184)
T ss_dssp             SSCCCTTCBCCCCEEEEE-ETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS
T ss_pred             cCcCCCCCCCCCcEeecc-cCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            356889999999999875 2367 8999999 899999999999999999999 899999999999999999 9999999


Q ss_pred             CHHhHHhhccCccccCCCCccc--eeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        124 SHFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      +++.+++|.++.       +++  ||+++|++++++++||+...+....-|....|++|||| +|+|+....+.
T Consensus       102 ~~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~  167 (184)
T 3uma_A          102 DLHVMGAWATHS-------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEE  167 (184)
T ss_dssp             CHHHHHHHHHHH-------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             CHHHHHHHHHHh-------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeC
Confidence            999999999854       677  99999999999999999765311001334558899997 99999877664

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.94  E-value=8.9e-28  Score=208.44  Aligned_cols=136  Identities=25%  Similarity=0.230  Sum_probs=118.3

Q ss_pred             ccccccCCCC----CCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         47 TFYSKNLSKP----APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        47 ~~~~~~~G~~----aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      ....+++|+.    +|+|++++.   +|++++|++++||++||+||+++|||+|+.++|.|++++++|+++|+++++||.
T Consensus        17 ~~~~l~~Gd~ig~~aP~f~l~~~---~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~   93 (179)
T 3ixr_A           17 RGSHMNIGDTLNHSLLNHPLMLS---GSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSR   93 (179)
T ss_dssp             -CCSSCTTCBCCHHHHHCCEEEG---GGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred             CCcccCcCcccCCcCCCeeEECC---CCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            3456778888    999999887   999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCC-cccceeEEEEEEEecCCCccccc
Q psy17178        123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP-VRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~-~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      |+++.+++|.+..       +++||+++|.+++++++||++..+... .......|++||||++|+|+...
T Consensus        94 D~~~~~~~~~~~~-------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~  157 (179)
T 3ixr_A           94 DSVKSHDSFCAKQ-------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW  157 (179)
T ss_dssp             CCHHHHHHHHHHH-------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE
T ss_pred             CCHHHHHHHHHHc-------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE
Confidence            9999999999854       789999999999999999997654321 11112368899999999998655

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.94  E-value=1.8e-26  Score=206.84  Aligned_cols=142  Identities=56%  Similarity=1.000  Sum_probs=124.3

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+.+|+++|+|+++++.+.+|++++|++++||++||+|||++|||+|+.+++.|++++++|+++|+++|+||.|+.+.+
T Consensus        25 ~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~  104 (220)
T 1zye_A           25 PAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSH  104 (220)
T ss_dssp             --CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            35689999999999986667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+.+.+..+.++++||+++|.+++++++||+.....|     ...|++||||++|+|+....|.
T Consensus       105 ~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g-----~~~P~~~liD~~G~I~~~~~g~  166 (220)
T 1zye_A          105 LAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG-----LALRGLFIIDPNGVIKHLSVND  166 (220)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCC-----cccceEEEECCCCEEEEEEecC
Confidence            9999877555444578999999999999999999765432     4568999999999998766554

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.94  E-value=2.8e-27  Score=202.89  Aligned_cols=131  Identities=16%  Similarity=0.160  Sum_probs=113.6

Q ss_pred             cccCCCCCCccEEE-eeecCccceEEcccc-CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHHHhCCc-EEEEEeCCCH
Q psy17178         50 SKNLSKPAPFWQGT-AVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVDSH  125 (384)
Q Consensus        50 ~~~~G~~aP~f~l~-~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~v-~vi~Vs~d~~  125 (384)
                      .+++|+++|+|+++ +.   +|++++|+++ +||++||+|||++|||+|+. |+|.|++++++|+++|+ +|++||.|++
T Consensus         2 ~l~~G~~aP~f~l~~~~---~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~   78 (167)
T 2wfc_A            2 PIKEGDKLPAVTVFGAT---PNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDS   78 (167)
T ss_dssp             CCCTTCBCCCCEEESSS---TTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCH
T ss_pred             CCCCCCcCCCcEeecCC---CCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCH
Confidence            46799999999998 66   8999999999 99999999999999999999 99999999999999999 9999999999


Q ss_pred             HhHHhhccCccccCCCCccc--eeEEeeCcchhHHhhcCcccCCCCccc-ceeEEEEEEEecCCCccccc
Q psy17178        126 FTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQGPVRG-SLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~ygv~~~~~g~~~g-~~~~~~~~vid~~G~v~~~~  192 (384)
                      +.+++|.+..       +++  ||+++|.+++++++||+...... ..| ....|++||| ++|+|+...
T Consensus        79 ~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~~gv~~~~~~-~~g~~~~~p~t~lI-~~G~I~~~~  139 (167)
T 2wfc_A           79 FVMDAWGKAH-------GADDKVQMLADPGGAFTKAVDMELDLSA-VLGNVRSKRYSLVI-EDGVVTKVN  139 (167)
T ss_dssp             HHHHHHHHHT-------TCTTTSEEEECTTSHHHHHTTCEECCHH-HHSSCEECCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHHHhc-------CCCcceEEEECCCCcHHHHcCCcccccc-ccCcccceEEEEEE-eCCEEEEEE
Confidence            9999999853       677  99999999999999999654210 011 2234789999 999998764

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.94  E-value=7.8e-27  Score=209.49  Aligned_cols=144  Identities=47%  Similarity=0.818  Sum_probs=124.8

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ...+.+|+++|+|+++++.|++|++++|++++||++||+||+++|||+|+.++|.|++++++|+++|+++|+||.|+.+.
T Consensus        37 ~~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~  116 (222)
T 3ztl_A           37 TMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYS  116 (222)
T ss_dssp             ---CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             cccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            35688999999999998668889999999999999999999779999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .++|.+.+++..+..+++||++.|.++++++.||+.....|     ...|++||||++|+|+....|..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g-----~~~P~~~lID~~G~I~~~~~g~~  180 (222)
T 3ztl_A          117 HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDG-----NAFRGLFIIDPNGILRQITINDK  180 (222)
T ss_dssp             HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTS-----SBCEEEEEECTTSEEEEEEEECT
T ss_pred             HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCC-----CccceEEEECCCCeEEEEEecCC
Confidence            99999877555444478999999999999999999765533     34588999999999997766543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.94  E-value=2.2e-26  Score=206.57  Aligned_cols=141  Identities=47%  Similarity=0.846  Sum_probs=127.3

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+.+|+|+++++.|.+|+++++++++||++||+||+++||++|+.++|.|++++++|++++++||+||+|++++.+
T Consensus        39 ~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~  118 (222)
T 3ztl_A           39 VLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHL  118 (222)
T ss_dssp             -CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            45789999999999877888999999999999999999966999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|.+.++++.+..+++|+++.|.++.+++.||+.....|...|++||||++|+|++++...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~  179 (222)
T 3ztl_A          119 AWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIND  179 (222)
T ss_dssp             HHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEEC
T ss_pred             HHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecC
Confidence            9999887665555799999999999999999997665556889999999999999988654

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.94  E-value=2.4e-26  Score=205.91  Aligned_cols=139  Identities=33%  Similarity=0.630  Sum_probs=118.5

Q ss_pred             cccCCCCCCccEEEeeecCcc--ceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g--~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      .+++|+++|+|++++. ..+|  ++++|+++ +||++||+|||++|||+|+.++|.|++++++|+++|+++|+||.|+++
T Consensus        24 ~l~~G~~aP~F~l~~~-~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~  102 (221)
T 2c0d_A           24 LSLVTKKAYNFTAQGL-NKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVY  102 (221)
T ss_dssp             --CTTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             cCCCCCCCCCeEEecc-ccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence            3689999999999764 2257  89999999 999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .+++|.+...+..+.++++||+++|.+++++++||+. ...|     ...|++||||++|+|++...|.
T Consensus       103 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g-----~~~P~~~lID~~G~I~~~~~g~  165 (221)
T 2c0d_A          103 SHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNS-----FALRGLFIIDKNGCVRHQTVND  165 (221)
T ss_dssp             HHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTT-----EECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCC-----CccceEEEECCCCeEEEEEecC
Confidence            9999998754333333578999999999999999997 4422     3568999999999999776553

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.94  E-value=4.1e-26  Score=204.43  Aligned_cols=137  Identities=34%  Similarity=0.618  Sum_probs=121.1

Q ss_pred             CCCCCCCCCceeeeEEcCcc--eeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g--~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      +.+|+.+|+|+++++ ..+|  ++++++++ +||++||+||+++|||+|+.++|.|++++++|++++++||+||.|+++.
T Consensus        25 l~~G~~aP~F~l~~~-~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~  103 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGL-NKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYS  103 (221)
T ss_dssp             -CTTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCCCCCCeEEecc-ccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            468999999999843 2278  99999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|++.++++.+.++++||++.|.+++++++||+. .+.|...|++||||++|+|++.+..
T Consensus       104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g  164 (221)
T 2c0d_A          104 HLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVN  164 (221)
T ss_dssp             HHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEec
Confidence            999999875544444678999999999999999997 5445578999999999999998764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.94  E-value=3.2e-26  Score=195.28  Aligned_cols=131  Identities=20%  Similarity=0.237  Sum_probs=116.9

Q ss_pred             CCCCCCCCCceeeeEEcCcc--eeeeccc-cCCCeEEEEEEeCCCCcCch-HhHHHHHHHHHHHHhCCcE-EEEEeCCCH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQL--KEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTE-VVAASVDSH  315 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g--~~~~l~d-~~Gk~vvl~F~~a~~c~~C~-~~~~~l~~l~~~~~~~~v~-vv~Is~d~~  315 (384)
                      +.+|+.+|+|+++.. |.+|  +++++++ ++||++||+||+++|||+|+ .|+|.|++++++|+++|++ |++||.|++
T Consensus         4 ~~~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~   82 (162)
T 1tp9_A            4 IAVGDVLPDGKLAYF-DEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP   82 (162)
T ss_dssp             CCTTCBCCCCEEEEE-CTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCH
T ss_pred             CCCCCCCCCeEEEee-cCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCH
Confidence            468999999998633 6799  9999999 89999999999999999999 9999999999999999999 999999999


Q ss_pred             HhHHHHhcCccccCCCCCc--ceeEEecCchHHHHHhCceecC--CC---ceeeEEEEEeCCceEEEEEecC
Q psy17178        316 FTHLAWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSD--QG---HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~~~--~~---~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +.+++|.+++       ++  +||++.|++++++++||+....  .|   .+.|++|||| +|+|++++...
T Consensus        83 ~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A           83 FVMKAWAKSY-------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             HHHHHHHHTC-------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             HHHHHHHHhc-------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence            9999999987       66  8999999999999999996432  12   2479999999 99999988654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.94  E-value=2e-26  Score=198.46  Aligned_cols=134  Identities=22%  Similarity=0.248  Sum_probs=117.4

Q ss_pred             ccCCCCCCCCCCceeeeEEcCcceeeeccc-cCCCeEEEEEEeCCCCcCch-HhHHHHHHHHHHHHhCCcEEEE-EeCCC
Q psy17178        238 RAIPFVSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTEVVA-ASVDS  314 (384)
Q Consensus       238 ~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d-~~Gk~vvl~F~~a~~c~~C~-~~~~~l~~l~~~~~~~~v~vv~-Is~d~  314 (384)
                      ...+.+|+.+|+|+++.  +.+|++++|++ ++||++||+||+++|||+|+ .|+|.|++++++|+++|+++|+ ||.|+
T Consensus        12 ~~~~~vG~~aPdf~l~~--~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~   89 (173)
T 3mng_A           12 SAPIKVGDAIPAVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVND   89 (173)
T ss_dssp             -CCCCTTCBCCCCEEEC--SSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred             CCCCCCCCCCCCeEeee--CCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            34467999999999981  34999999999 59999989998899999999 5999999999999999999997 99999


Q ss_pred             HHhHHHHhcCccccCCCCCcc--eeEEecCchHHHHHhCceecCC-----C--ceeeEEEEEeCCceEEEEEecCC
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQ-----G--HTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~~~~~-----~--~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      ++.+++|+++.       +++  ||+++|++++++++||+...+.     |  ...|++|||| +|+|++++....
T Consensus        90 ~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~  157 (173)
T 3mng_A           90 AFVTGEWGRAH-------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPD  157 (173)
T ss_dssp             HHHHHHHHHHT-------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTT
T ss_pred             HHHHHHHHHHh-------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCC
Confidence            99999999987       666  9999999999999999976532     1  3679999999 999999988653

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.94  E-value=1.5e-26  Score=200.76  Aligned_cols=131  Identities=27%  Similarity=0.254  Sum_probs=117.7

Q ss_pred             ccCCCCCCC----CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        238 RAIPFVSKP----APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       238 ~~~~~~g~~----~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .....+|+.    +|+|++++.   +|+++++++++||++||+||+++|||+|+.+++.|++++++|++++++|++||.|
T Consensus        18 ~~~l~~Gd~ig~~aP~f~l~~~---~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D   94 (179)
T 3ixr_A           18 GSHMNIGDTLNHSLLNHPLMLS---GSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRD   94 (179)
T ss_dssp             CCSSCTTCBCCHHHHHCCEEEG---GGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESC
T ss_pred             CcccCcCcccCCcCCCeeEECC---CCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            344567777    999999954   9999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C----ceeeEEEEEeCCceEEEEEe
Q psy17178        314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~----~~~p~~~lId~~G~i~~~~~  378 (384)
                      +++.+++|++++       +++||++.|++++++++||++..+.  +    ...|++||||++|+|++++.
T Consensus        95 ~~~~~~~~~~~~-------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~  158 (179)
T 3ixr_A           95 SVKSHDSFCAKQ-------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWR  158 (179)
T ss_dssp             CHHHHHHHHHHH-------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEEC
T ss_pred             CHHHHHHHHHHc-------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEc
Confidence            999999999977       8999999999999999999976432  1    14799999999999999884

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.94  E-value=1.4e-26  Score=202.12  Aligned_cols=133  Identities=31%  Similarity=0.524  Sum_probs=116.2

Q ss_pred             cCCCCCCccEEEeeecCc-c--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         52 NLSKPAPFWQGTAVVDGQ-L--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~-g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++|+++|+|++++.   + |  ++++|++++||++||+||+++|||+|+.++|.|++++++|+++|+++++||.|+++.+
T Consensus         2 ~~G~~aP~f~l~~~---~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~   78 (186)
T 1n8j_A            2 LINTKIKPFKNQAF---KNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTH   78 (186)
T ss_dssp             CTTCBCCCCEEEEE---ETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCcCCCcEeecc---cCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            58999999999887   4 6  8999999999999999998899999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+.+   .+..+++||+++|.+++++++||+.....    | ...|++||||++|+|+....|.
T Consensus        79 ~~~~~~~---~~~~~~~fp~l~D~~~~~~~~ygv~~~~~----g-~~~p~~~lID~~G~i~~~~~~~  137 (186)
T 1n8j_A           79 KAWHSSS---ETIAKIKYAMIGDPTGALTRNFDNMREDE----G-LADRATFVVDPQGIIQAIEVTA  137 (186)
T ss_dssp             HHHHHHC---TTGGGCCSEEEECTTSHHHHHTTCEETTT----T-EECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHc---CcccCCceeEEECCchHHHHHhCCccCCC----C-ceeeEEEEECCCCeEEEEEecC
Confidence            9998753   12225789999999999999999976542    2 3578999999999999776654

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.94  E-value=9.5e-26  Score=202.09  Aligned_cols=140  Identities=59%  Similarity=0.987  Sum_probs=126.8

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+.+|+|+++++.|.+|+++++++++||++||+||+++|||+|+.+++.|++++++|++++++||+||.|+++.++
T Consensus        26 ~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~  105 (220)
T 1zye_A           26 APAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHL  105 (220)
T ss_dssp             -CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             cccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            35789999999999876778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++.+.+..+..+++||++.|.++.+++.||+.....|...|++||||++|+|++++..
T Consensus       106 ~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g  165 (220)
T 1zye_A          106 AWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVN  165 (220)
T ss_dssp             HHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEec
Confidence            999988666555578999999999999999999766556689999999999999998754

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.94  E-value=1.4e-26  Score=198.09  Aligned_cols=132  Identities=21%  Similarity=0.248  Sum_probs=114.7

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+++|+++|+|++++.   +|++++|++++||++||+||+++|||+|+.++|.|++++++|  .|+++++||.|+++.+
T Consensus        15 ~~~~~G~~~P~f~l~~~---~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~   89 (165)
T 1q98_A           15 HFPQVGEIVENFILVGN---DLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQ   89 (165)
T ss_dssp             CCCCTTCBCCCCEEECT---TSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHH
T ss_pred             ccCCCCCCCCCeEEECC---CCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHH
Confidence            35679999999999776   999999999999999999999999999999999999999999  7899999999999988


Q ss_pred             HhhccCccccCCCCcc-ceeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        129 LAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++|.+..       ++ +||+++|. +++++++||+...+.+ ..| ...|++||||++|+|+....|
T Consensus        90 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~-~~g-~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A           90 ARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGP-LAG-LTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             TTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSST-TTT-SBCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHc-------CCCceEEeeccccchHHHHhCceecccc-cCC-ccceeEEEEcCCCEEEEEEeC
Confidence            8888753       78 79999998 8999999999754311 122 356889999999999977654

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.94  E-value=2e-26  Score=197.29  Aligned_cols=129  Identities=22%  Similarity=0.224  Sum_probs=117.4

Q ss_pred             ccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        238 RAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       238 ~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      +..+.+|+.+|+|+++   |.+|+++++++++||++||+||+++|||+|+.++|.|++++++   ++++|++||.|+++.
T Consensus        17 ~~~l~~G~~aP~f~l~---~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~~   90 (166)
T 3p7x_A           17 GQQINEGDFAPDFTVL---DNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPFA   90 (166)
T ss_dssp             SCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHHH
T ss_pred             cccCCCCCCCCCeEEE---cCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHHH
Confidence            3445789999999998   5699999999999999999999999999999999999999987   789999999999999


Q ss_pred             HHHHhcCccccCCCCCc-ceeEEecC-chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|++++       ++ +||++.|. ++.++++||+.....+.+.|++||||++|+|++++..
T Consensus        91 ~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~  147 (166)
T 3p7x_A           91 QKRWCASA-------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIV  147 (166)
T ss_dssp             HHHHHHHH-------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEEC
T ss_pred             HHHHHHHc-------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEc
Confidence            99999977       78 89999999 8999999999776655678999999999999998754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.94  E-value=3.4e-26  Score=202.25  Aligned_cols=143  Identities=43%  Similarity=0.795  Sum_probs=123.2

Q ss_pred             ccccCCCCCCccEEEeee-cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         49 YSKNLSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~-~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ..+.+|+++|+|++++.. +++|++++|++++||++||+|||++|||+|+.+++.|++++++|++.|+++++||.|+.+.
T Consensus         4 ~~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~   83 (202)
T 1uul_A            4 GEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYS   83 (202)
T ss_dssp             CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             ccccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            356799999999998763 4445899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +++|.+.+.+..+.++++||+++|.+++++++||+.....|     ...|++||||++|+|+....|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g-----~~~P~~~lid~~G~i~~~~~g~~  147 (202)
T 1uul_A           84 HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG-----VAYRGLFIIDPKQNLRQITVNDL  147 (202)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTT-----EECEEEEEECTTSBEEEEEEECT
T ss_pred             HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCC-----ceeeEEEEECCCCEEEEEEeCCC
Confidence            99999876444444468999999999999999999765533     46789999999999987765543

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.94  E-value=4.8e-26  Score=194.76  Aligned_cols=128  Identities=20%  Similarity=0.241  Sum_probs=114.7

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+.+|+.+|+|+++   |.+|+++++++++||++||+||+++|||+|+.++|.|++++++|  ++++|++||.|+++.+
T Consensus        15 ~~~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~   89 (165)
T 1q98_A           15 HFPQVGEIVENFILV---GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQ   89 (165)
T ss_dssp             CCCCTTCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHH
T ss_pred             ccCCCCCCCCCeEEE---CCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHH
Confidence            345789999999998   56999999999999999999999999999999999999999999  7899999999999888


Q ss_pred             HHHhcCccccCCCCCc-ceeEEecC-chHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++|++++       ++ +|+++.|. ++.++++||+...+   .|.+.|++||||++|+|++.+.
T Consensus        90 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~  147 (165)
T 1q98_A           90 ARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL  147 (165)
T ss_dssp             TTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             HHHHHHc-------CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence            8888776       78 79999998 79999999997543   2345799999999999999886

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.94  E-value=4.7e-27  Score=200.21  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=116.1

Q ss_pred             cccCCCCCCccE--EEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         50 SKNLSKPAPFWQ--GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        50 ~~~~G~~aP~f~--l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      .+++|+++|+|+  +++.   +|++++|++++||++||+||+++|||+|+.++|.|++++++|+++|+++++||.|+++.
T Consensus         6 ~l~~G~~~P~f~~~l~~~---~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~   82 (163)
T 3gkn_A            6 DAVLELPAATFDLPLSLS---GGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKS   82 (163)
T ss_dssp             CCCCCCCGGGGGCCEECS---TTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             ccccCCcCCCccccccCC---CCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            468999999999  9877   99999999999999999999779999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCC-cccceeEEEEEEEecCCCccccc
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP-VRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~-~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      +++|.+.+       +++||+++|.+++++++||+.....+. .......|++||||++|+|+...
T Consensus        83 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~  141 (163)
T 3gkn_A           83 HDNFCAKQ-------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW  141 (163)
T ss_dssp             HHHHHHHH-------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred             HHHHHHHh-------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence            99999854       789999999999999999997643211 11111268899999999998655

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.94  E-value=2.7e-26  Score=195.88  Aligned_cols=129  Identities=25%  Similarity=0.262  Sum_probs=116.2

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+.+|+.+|+|+++   |.+|+++++++++||++||+||+++||++|+.++|.|+++++++  ++++|++||.|+++.+
T Consensus        14 ~~~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~   88 (163)
T 1psq_A           14 KQLQVGDKALDFSLT---TTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQ   88 (163)
T ss_dssp             CCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCCEEEE---cCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHH
Confidence            345689999999998   66999999999999999999997899999999999999999999  7899999999999999


Q ss_pred             HHHhcCccccCCCCCc-ceeEEec-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|++++       ++ +||++.| .++.++++||+...+.|...|++||||++|+|++.+..
T Consensus        89 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g  144 (163)
T 1psq_A           89 KRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYV  144 (163)
T ss_dssp             HHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEEC
T ss_pred             HHHHHhc-------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEec
Confidence            9999876       78 9999999 88999999999654434457999999999999998864

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.94  E-value=3.4e-26  Score=194.93  Aligned_cols=129  Identities=24%  Similarity=0.299  Sum_probs=116.5

Q ss_pred             CCCCCCCCCce--eeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        241 PFVSKPAPFWQ--GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~--l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+|+.+|+|+  ++   |.+|+++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++||.|+++.+
T Consensus         7 l~~G~~~P~f~~~l~---~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~   83 (163)
T 3gkn_A            7 AVLELPAATFDLPLS---LSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSH   83 (163)
T ss_dssp             CCCCCCGGGGGCCEE---CSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             cccCCcCCCcccccc---CCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence            46899999999  98   56999999999999999999996699999999999999999999999999999999999999


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C----ceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~----~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|++++       +++|+++.|.+++++++||+.....  +    .+.|++||||++|+|++.+..
T Consensus        84 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~  143 (163)
T 3gkn_A           84 DNFCAKQ-------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRK  143 (163)
T ss_dssp             HHHHHHH-------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECS
T ss_pred             HHHHHHh-------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcC
Confidence            9999977       8999999999999999999965321  1    128999999999999998843

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.94  E-value=5.9e-27  Score=211.14  Aligned_cols=148  Identities=22%  Similarity=0.337  Sum_probs=120.7

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++.+|+++|+|++++.   +| +++|++++|| ++||+|||++|||+|+.|++.|++++++|+++|+++|+||+|+.+.+
T Consensus         2 ~l~iG~~aPdF~l~~~---~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~   77 (233)
T 2v2g_A            2 GITLGEVFPNFEADST---IG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADH   77 (233)
T ss_dssp             CCCTTCBCCCCEEEET---TC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCcEEecC---CC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHH
Confidence            4679999999999887   88 9999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCC-ccceeEEeeCcchhHHhhcCcccCCCCccc-ceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        129 LAWVNTPRKEGGLG-KLKIPLLSDLTHKISLDYGVYLSDQGPVRG-SLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       129 ~~~~~~~~~~~~~~-~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g-~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      ++|.+.+.+..+.+ +++||+++|.+++++++||+.........| ....|++||||++|+|+....+   +...+++
T Consensus        78 ~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~---~~~~gr~  152 (233)
T 2v2g_A           78 KEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILY---PATTGRN  152 (233)
T ss_dssp             HHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEE---CTTBCCC
T ss_pred             HHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEec---CCCCCCC
Confidence            99998543321111 578999999999999999997543100112 2456899999999999865443   4445554

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.93  E-value=1.5e-26  Score=196.94  Aligned_cols=129  Identities=29%  Similarity=0.354  Sum_probs=115.5

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCe-EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~-vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++++|+++|+|++++.   +|++++|++++||+ +||+||+++|||+|+.++|.|++++++|+++|+++++|+.|+++..
T Consensus         1 ml~~G~~~P~f~l~~~---~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~   77 (161)
T 3drn_A            1 MVKVGDKAPLFEGIAD---NGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSH   77 (161)
T ss_dssp             -CCTTSBCCCCEEEET---TSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHH
T ss_pred             CCCCCCcCCCeEeecC---CCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence            3679999999999887   99999999999997 9999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+..       +++||++.|.++++++.||+...       ....|++||||++|+|+....|.
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~-------~~~~P~~~lid~~G~i~~~~~g~  130 (161)
T 3drn_A           78 KRFKEKY-------KLPFILVSDPDKKIRELYGAKGF-------ILPARITFVIDKKGIIRHIYNSQ  130 (161)
T ss_dssp             HHHHHHT-------TCCSEEEECTTSHHHHHTTCCCS-------SSCCCEEEEECTTSBEEEEEECS
T ss_pred             HHHHHHh-------CCCceEEECCcHHHHHHcCCCCc-------CcccceEEEECCCCEEEEEEecC
Confidence            9999854       78999999999999999999421       13357889999999998776664

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.93  E-value=4.5e-26  Score=195.33  Aligned_cols=130  Identities=14%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             CCCCCCCCCceee-eEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHHHhCCc-EEEEEeCCCHH
Q psy17178        241 PFVSKPAPFWQGT-AVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVDSHF  316 (384)
Q Consensus       241 ~~~g~~~P~f~l~-~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~~~~~v-~vv~Is~d~~~  316 (384)
                      +.+|+.+|+|+++ +.   +|++++|+++ +||++||+||+++|||+|+. |+|.|++++++|+++|+ +|++||.|+++
T Consensus         3 l~~G~~aP~f~l~~~~---~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~   79 (167)
T 2wfc_A            3 IKEGDKLPAVTVFGAT---PNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSF   79 (167)
T ss_dssp             CCTTCBCCCCEEESSS---TTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHH
T ss_pred             CCCCCcCCCcEeecCC---CCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHH
Confidence            4689999999998 55   9999999999 99999999999999999999 99999999999999999 99999999999


Q ss_pred             hHHHHhcCccccCCCCCcc--eeEEecCchHHHHHhCceecCC-----CceeeEEEEEeCCceEEEEEecCC
Q psy17178        317 THLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQ-----GHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~~~~~-----~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      .+++|+++.       +++  ||++.|++++++++||+.....     ....|++||| ++|+|++++...+
T Consensus        80 ~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~  143 (167)
T 2wfc_A           80 VMDAWGKAH-------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPD  143 (167)
T ss_dssp             HHHHHHHHT-------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTT
T ss_pred             HHHHHHHhc-------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCC
Confidence            999999876       677  9999999999999999965411     1245999999 9999999887654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.93  E-value=9.1e-27  Score=198.81  Aligned_cols=130  Identities=26%  Similarity=0.349  Sum_probs=115.1

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+++|+++|+|++++.   +|++++|++++||++||+||+++|||+|+.++|.|++++++|  .++++++||.|+++.+
T Consensus        14 ~~~~~G~~~P~f~l~~~---~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~   88 (163)
T 1psq_A           14 KQLQVGDKALDFSLTTT---DLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQ   88 (163)
T ss_dssp             CCCCTTSBCCCCEEECT---TSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCCEEEEcC---CCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHH
Confidence            35679999999999776   999999999999999999998899999999999999999999  7899999999999999


Q ss_pred             HhhccCccccCCCCcc-ceeEEee-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~p~l~D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+..       ++ +||+++| .+++++++||+...+.|     ...|++||||++|+|+....|.
T Consensus        89 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g-----~~~p~~~liD~~G~i~~~~~g~  145 (163)
T 1psq_A           89 KRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWH-----LLARAVFVLDTDNTIRYVEYVD  145 (163)
T ss_dssp             HHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTC-----SBCCEEEEECTTCBEEEEEECS
T ss_pred             HHHHHhc-------CCCCcEEecCCchhHHHHHhCCccccCC-----ceEEEEEEEcCCCeEEEEEecC
Confidence            9998854       78 8999999 88999999999654422     2357899999999999776654

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.93  E-value=7.1e-26  Score=197.65  Aligned_cols=134  Identities=28%  Similarity=0.456  Sum_probs=117.5

Q ss_pred             CCCCCCCCceeeeEEcCcc--eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g--~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+|+.+|+|+++++ + +|  +++++++++||++||+||+++|||+|+.++|.|++++++|++++++|++||.|+++.++
T Consensus         2 ~~G~~aP~f~l~~~-~-~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~   79 (186)
T 1n8j_A            2 LINTKIKPFKNQAF-K-NGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK   79 (186)
T ss_dssp             CTTCBCCCCEEEEE-E-TTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCcCCCcEeecc-c-CCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            47899999999965 1 37  89999999999999999977999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|++++.   +..+++||++.|.++.++++||+.....|.+.|++||||++|+|++++...
T Consensus        80 ~~~~~~~---~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~  137 (186)
T 1n8j_A           80 AWHSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTA  137 (186)
T ss_dssp             HHHHHCT---TGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHcC---cccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecC
Confidence            9988652   122578999999999999999997654455689999999999999988643

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.93  E-value=7.1e-26  Score=199.89  Aligned_cols=129  Identities=24%  Similarity=0.289  Sum_probs=116.5

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+.+|+.+|+|+++   |.+|++++|++++||++||+||+++||++|+.+++.|++++++|  ++++|++||.|+++.+
T Consensus        50 ~~l~~G~~aPdf~l~---d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~  124 (200)
T 3zrd_A           50 KLPQIGDKAKDFTLV---AKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQ  124 (200)
T ss_dssp             CCCCTTCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHH
T ss_pred             ccCCCCCCCCCeEEE---CCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHH
Confidence            345789999999998   56999999999999999999999999999999999999999999  7899999999999988


Q ss_pred             HHHhcCccccCCCCCc-ceeEEecC-chHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|++++       ++ +|+++.|. ++.++++||+....   .|.+.|++||||++|+|++++..
T Consensus       125 ~~~~~~~-------~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~  183 (200)
T 3zrd_A          125 SRFCGAE-------GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELV  183 (200)
T ss_dssp             TTCTTTT-------TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHc-------CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEec
Confidence            8888876       88 99999999 89999999997544   24468999999999999998764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.93  E-value=1.2e-26  Score=198.57  Aligned_cols=129  Identities=26%  Similarity=0.278  Sum_probs=114.1

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ...+++|+++|+|++++.   +|++++|++++||++||+||+++|||+|+.++|.|++++++   .|+++++||.|+++.
T Consensus        17 ~~~l~~G~~aP~f~l~~~---~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~~   90 (166)
T 3p7x_A           17 GQQINEGDFAPDFTVLDN---DLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPFA   90 (166)
T ss_dssp             SCCCCTTSBCCCCEEECT---TSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHHH
T ss_pred             cccCCCCCCCCCeEEEcC---CCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHHH
Confidence            346779999999999877   99999999999999999999999999999999999999887   789999999999999


Q ss_pred             HHhhccCccccCCCCcc-ceeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        128 HLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +++|.+.+       ++ +||+++|. +++++++||+.....|     ...|++||||++|+|+....+
T Consensus        91 ~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g-----~~~p~~~liD~~G~i~~~~~~  147 (166)
T 3p7x_A           91 QKRWCASA-------GLDNVITLSDHRDLSFGENYGVVMEELR-----LLARAVFVLDADNKVVYKEIV  147 (166)
T ss_dssp             HHHHHHHH-------TCSSCEEEECTTTCHHHHHHTCEETTTT-----EECCEEEEECTTCBEEEEEEC
T ss_pred             HHHHHHHc-------CCCceEEccCCchhHHHHHhCCccccCC-----ceeeEEEEECCCCeEEEEEEc
Confidence            99999854       78 89999999 8999999999765422     346889999999999876443

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.93  E-value=3e-26  Score=202.29  Aligned_cols=132  Identities=24%  Similarity=0.257  Sum_probs=115.3

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+++|+++|+|++++.   +|++++|++++||++||+||+++|||+|+.++|.|++++++|  +|+++++||.|+++.+
T Consensus        50 ~~l~~G~~aPdf~l~d~---~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~  124 (200)
T 3zrd_A           50 KLPQIGDKAKDFTLVAK---DLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQ  124 (200)
T ss_dssp             CCCCTTCBCCCCEEECT---TSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHH
T ss_pred             ccCCCCCCCCCeEEECC---CCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHH
Confidence            45789999999999876   999999999999999999999999999999999999999999  6899999999999999


Q ss_pred             HhhccCccccCCCCcc-ceeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        129 LAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++|.+..       ++ +||+++|. +++++++||+.....+ ..|. ..|++||||++|+|+....+
T Consensus       125 ~~~~~~~-------~~~~f~~l~D~~~~~~~~~ygv~~~~~~-~~g~-~~p~~~lID~~G~I~~~~~~  183 (200)
T 3zrd_A          125 SRFCGAE-------GLSNVITLSTLRGADFKQAYGVAITEGP-LAGL-TARAVVVLDGQDNVIYSELV  183 (200)
T ss_dssp             TTCTTTT-------TCTTEEEEETTSCTHHHHHTTCEECSST-TTTS-BCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHc-------CCCCceEEecCchHHHHHHhCceeeccc-CCCc-cccEEEEECCCCeEEEEEec
Confidence            9998754       78 99999999 9999999999754411 1232 56889999999999865443

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.93  E-value=6.7e-26  Score=192.96  Aligned_cols=127  Identities=29%  Similarity=0.321  Sum_probs=116.4

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCe-EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~-vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      ..+|+.+|+|++++   .+|+++++++++||+ +||+||+++|||+|+.++|.|++++++|+++|++|++|+.|+++.++
T Consensus         2 l~~G~~~P~f~l~~---~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~   78 (161)
T 3drn_A            2 VKVGDKAPLFEGIA---DNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK   78 (161)
T ss_dssp             CCTTSBCCCCEEEE---TTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHH
T ss_pred             CCCCCcCCCeEeec---CCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence            46899999999994   599999999999997 99999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++++       +++|+++.|.++.+++.||+...  ..+.|++||||++|+|++.+..
T Consensus        79 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~--~~~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A           79 RFKEKY-------KLPFILVSDPDKKIRELYGAKGF--ILPARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             HHHHHT-------TCCSEEEECTTSHHHHHTTCCCS--SSCCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHh-------CCCceEEECCcHHHHHHcCCCCc--CcccceEEEECCCCEEEEEEec
Confidence            999987       88999999999999999999421  2348999999999999998875

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.93  E-value=2.7e-26  Score=196.47  Aligned_cols=138  Identities=18%  Similarity=0.170  Sum_probs=117.5

Q ss_pred             ccccCCCCCCccEEEeeec-------CccceEEcccc-CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHHHhCCc-EEE
Q psy17178         49 YSKNLSKPAPFWQGTAVVD-------GQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVV  118 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~-------~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~v-~vi  118 (384)
                      -++++|+++|++++....+       +..++++|+++ +||++||+|||++|||+|.. |++.|++.+++|+++|+ +|+
T Consensus         8 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vi   87 (176)
T 4f82_A            8 HMIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIW   87 (176)
T ss_dssp             CCCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence            4678999999999988754       34478999998 99999999999999999999 99999999999999999 999


Q ss_pred             EEeCCCHHhHHhhccCccccCCCCccc--eeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        119 AASVDSHFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       119 ~Vs~d~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +||+|+++.+++|.+..       +++  ||+++|++++++++||+..+.....-|....|++||| ++|+|+....+
T Consensus        88 gIS~D~~~~~~~f~~~~-------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~  157 (176)
T 4f82_A           88 CVSVNDAFVMGAWGRDL-------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVE  157 (176)
T ss_dssp             EEESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEEC
T ss_pred             EEeCCCHHHHHHHHHHh-------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEc
Confidence            99999999999999853       666  9999999999999999976531100133345899999 99999876654

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.93  E-value=1.1e-25  Score=200.62  Aligned_cols=140  Identities=41%  Similarity=0.755  Sum_probs=120.6

Q ss_pred             ccccCCCCCCccEEEeeecCcc--ceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  125 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g--~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~  125 (384)
                      ..+.+|+++|+|++++. ..+|  ++++|+++ +||++||+|||++|||+|+.+++.|++++++|++.|+++|+||.|++
T Consensus        19 ~~l~~G~~aP~f~l~~~-~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~   97 (213)
T 2i81_A           19 SPTYVGKEAPFFKAEAV-FGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSK   97 (213)
T ss_dssp             -CCCBTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             ccccCCCcCCCeEeecc-ccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            45679999999999775 1247  89999999 99999999999999999999999999999999999999999999999


Q ss_pred             HhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      +.+++|.+...+..+..+++||+++|.+++++++||+.. +.|     ...|.+||||++|+|++...|.
T Consensus        98 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g-----~~~p~~~lID~~G~i~~~~~~~  161 (213)
T 2i81_A           98 YTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDS-----VSLRAFVLIDMNGIVQHLLVNN  161 (213)
T ss_dssp             HHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTT-----EECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccC-----CcccEEEEECCCCEEEEEEecC
Confidence            999999987654444446899999999999999999965 322     4578999999999998775443

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.93  E-value=2.3e-25  Score=198.62  Aligned_cols=138  Identities=43%  Similarity=0.793  Sum_probs=123.1

Q ss_pred             CCCCCCCCCCceeeeEEcCcc--eeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g--~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+.+|+.+|+|+++++ ..+|  ++++++++ +||++||+||+++|||+|+.+++.|++++++|++++++||+||.|+++
T Consensus        20 ~l~~G~~aP~f~l~~~-~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~   98 (213)
T 2i81_A           20 PTYVGKEAPFFKAEAV-FGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKY   98 (213)
T ss_dssp             CCCBTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             cccCCCcCCCeEeecc-ccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence            4578999999999844 2268  89999999 999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+++|++.+++..+..+++||++.|.+++++++||+.. +.|...|++||||++|+|++++..
T Consensus        99 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~  160 (213)
T 2i81_A           99 THLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVN  160 (213)
T ss_dssp             HHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEec
Confidence            99999998866655557899999999999999999965 344589999999999999998754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.93  E-value=3.3e-25  Score=195.87  Aligned_cols=139  Identities=43%  Similarity=0.757  Sum_probs=123.4

Q ss_pred             CCCCCCCCCceeeeEE-cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~-d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +.+|+.+|+|++++.. |.+|+++++++++||++||+||+++||++|+.+++.|++++++|++++++|++||.|+++.++
T Consensus         6 ~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~   85 (202)
T 1uul_A            6 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL   85 (202)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             ccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            4689999999999652 223389999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++.+++..+..+++||++.|.++++++.||+...+.|...|++||||++|+|++++..
T Consensus        86 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g  145 (202)
T 1uul_A           86 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVN  145 (202)
T ss_dssp             HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeC
Confidence            999987665555578999999999999999999766555689999999999999998754

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.93  E-value=1.2e-25  Score=195.56  Aligned_cols=133  Identities=16%  Similarity=0.134  Sum_probs=117.1

Q ss_pred             cCCCCCCCCCCceeeeEEcCcc-eeeeccc-cCCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHHHhCCcE-EEEEeCCC
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQL-KEIKLSD-YYGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINTE-VVAASVDS  314 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g-~~~~l~d-~~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~~~~~v~-vv~Is~d~  314 (384)
                      ..+.+|+.+|+|+++++ +.+| ++++|++ ++||++||+||+++|||+|+. |+|.|++++++|+++|++ |++||.|+
T Consensus        24 ~~l~vG~~aPdf~l~~~-~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~  102 (184)
T 3uma_A           24 MTIAVGDKLPNATFKEK-TADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVND  102 (184)
T ss_dssp             SCCCTTCBCCCCEEEEE-ETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred             CcCCCCCCCCCcEeecc-cCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            34579999999999955 3478 9999999 899988888888999999999 899999999999999999 99999999


Q ss_pred             HHhHHHHhcCccccCCCCCcc--eeEEecCchHHHHHhCceecCC--C---ceeeEEEEEeCCceEEEEEecC
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQ--G---HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~~~~~--~---~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      ++.+++|++++       +++  ||+++|++++++++||+...+.  |   ...|++|||| +|+|++++...
T Consensus       103 ~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~  167 (184)
T 3uma_A          103 LHVMGAWATHS-------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEE  167 (184)
T ss_dssp             HHHHHHHHHHH-------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             HHHHHHHHHHh-------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeC
Confidence            99999999987       777  9999999999999999975431  2   2468899997 99999999864

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.93  E-value=3.8e-26  Score=205.02  Aligned_cols=148  Identities=24%  Similarity=0.376  Sum_probs=120.7

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .+.+|+++|+|++.+.   +| +++|++++|| ++||+||+++|||+|+.|++.|++++++|+++|+++|+||.|+.+.+
T Consensus         4 ~l~~G~~aP~F~l~~~---~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~   79 (224)
T 1prx_A            4 GLLLGDVAPNFEANTT---VG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDH   79 (224)
T ss_dssp             -CCTTCBCCCCEEEET---TE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHH
T ss_pred             cCCCcCCCCCcEEecC---CC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence            4679999999999887   88 9999999997 88888888999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCC---CccceeEEeeCcchhHHhhcCcccCCCCccc-ceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        129 LAWVNTPRKEGGL---GKLKIPLLSDLTHKISLDYGVYLSDQGPVRG-SLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       129 ~~~~~~~~~~~~~---~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g-~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      ++|.+.+++..+.   .+++||+++|.+++++++||+.........| ....|++||||++|+|+....+   +...+++
T Consensus        80 ~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~---~~~~gr~  156 (224)
T 1prx_A           80 LAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILY---PATTGRN  156 (224)
T ss_dssp             HHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEEC---CTTBCCC
T ss_pred             HHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEec---CCCCCCC
Confidence            9999865443221   2789999999999999999997653211122 2346889999999999866543   4444554

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.93  E-value=4.2e-26  Score=194.97  Aligned_cols=134  Identities=15%  Similarity=0.170  Sum_probs=113.5

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcE-EEEEeCCCHH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE-VVAASVDSHF  126 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~-vi~Vs~d~~~  126 (384)
                      ..+++|+++|+|++++  ++.+++++|+++ +||++||+|||+.|||+|..|++.|++.+++|++.|++ |++||+|+++
T Consensus        12 ~~~~vGd~aPdf~l~~--~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~   89 (171)
T 2xhf_A           12 SPIKVGDIIPDVLVYE--DVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPF   89 (171)
T ss_dssp             CCCCTTCBCCCCEEEC--SSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHH
T ss_pred             CcccCcCCCCCeEEec--CCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHH
Confidence            3578999999999972  111389999995 99999999999999999999999999999999999996 9999999999


Q ss_pred             hHHhhccCccccCCCCcc--ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        127 THLAWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      .+++|.+..       ++  +||+++|++++++++||+..+..+...|....|++|||| +|+|+...
T Consensus        90 ~~~~w~~~~-------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~  149 (171)
T 2xhf_A           90 VMAAWGKTV-------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS  149 (171)
T ss_dssp             HHHHHHHHH-------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             HHHHHHHhc-------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence            999999854       45  899999999999999999865411001334668899999 99998654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.93  E-value=5.5e-25  Score=192.83  Aligned_cols=135  Identities=40%  Similarity=0.737  Sum_probs=120.8

Q ss_pred             CCCCCCCceeeeEEcCcc--eeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        243 VSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g--~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +|+.+|+|++++. ..+|  ++++++++ +||++||+||+++||++|+.++|.|++++++|++++++|++||.|+++.++
T Consensus         2 ~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~   80 (192)
T 2h01_A            2 FQGQAPSFKAEAV-FGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHL   80 (192)
T ss_dssp             CSSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCcCCCcEeEee-ecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHH
Confidence            6899999999843 2278  99999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.+.+.++.+..+++|+++.|.++.+++.||+.. +.|...|++||||++|+|++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g  139 (192)
T 2h01_A           81 AWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVN  139 (192)
T ss_dssp             HHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEG
T ss_pred             HHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeC
Confidence            99998866555557899999999999999999965 334578999999999999998764

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.93  E-value=8.8e-26  Score=200.68  Aligned_cols=126  Identities=19%  Similarity=0.143  Sum_probs=109.7

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCch-----HHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP-----TEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~-----~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ..+++|++||+|+|++.   +|++++|++++||++||+|||++|||+|.     .|++.|++.   |  .|++||+||.|
T Consensus        20 ~~l~vG~~APdFtL~d~---~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~D   91 (224)
T 3keb_A           20 DFPRKGDYLPSFMLVDD---QKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVD   91 (224)
T ss_dssp             CCCCTTCBCCCCEEEET---TSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESS
T ss_pred             CcCCCCCCCCCeEEECC---CCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECC
Confidence            35679999999999876   89999999999999999999999999999     999999988   4  78999999999


Q ss_pred             CHHhHHhhccCccccCCCCcc-ceeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        124 SHFTHLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      +++.+++|.+..       ++ +||+++|. +++++++||++.... ...| ...|++||||++|+|++.
T Consensus        92 s~~~~~~f~~~~-------gl~~fplLsD~~~~~vak~yGv~~~~~-~~~G-~~~p~tfvID~dG~I~~~  152 (224)
T 3keb_A           92 SPSSLARARHEH-------GLPNIALLSTLRGRDFHKRYGVLITEY-PLSG-YTSPAIILADAANVVHYS  152 (224)
T ss_dssp             CHHHHHHHHHHH-------CCTTCEEEESTTCTTHHHHTTCBCCST-TSTT-CBCCEEEEECTTCBEEEE
T ss_pred             CHHHHHHHHHHc-------CCCCceEEEcCCchHHHHHhCCccccc-cccC-CccCEEEEEcCCCEEEEE
Confidence            999999999854       67 69999998 699999999976531 1123 457899999999999854

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.92  E-value=6.1e-26  Score=203.18  Aligned_cols=150  Identities=21%  Similarity=0.371  Sum_probs=119.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++.+|+++|+|++++. +.+| +++|++++|| ++||+||+++|||+|+.|++.|++++++|+++|+++|+||+|+.+.+
T Consensus         2 ~l~iG~~aP~F~l~~~-~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~   79 (220)
T 1xcc_A            2 GYHLGATFPNFTAKAS-GIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESH   79 (220)
T ss_dssp             CCCTTCBCCCCEECBT-TCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCcEeecc-cCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence            4679999999999653 2256 8999999998 88888888999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCccc-ceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG-SLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g-~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      ++|.+.+++.....+++||+++|.+++++++||+.........| ....|++||||++|+|+....+   +...+++
T Consensus        80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~---~~~~g~~  153 (220)
T 1xcc_A           80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLY---PATTGRN  153 (220)
T ss_dssp             HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEE---CTTBCCC
T ss_pred             HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEec---CCCCCCC
Confidence            99988543210112789999999999999999997543110123 2346899999999999866543   4444554

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.92  E-value=2.6e-25  Score=191.22  Aligned_cols=128  Identities=20%  Similarity=0.178  Sum_probs=114.9

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+.+|+.+|+|+++   |.+|+++++++++||++||+||+++|||+|+.+++.|+++++++  ++++|++||.|+++.+
T Consensus        19 ~~l~~g~~~P~f~l~---~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~   93 (171)
T 2yzh_A           19 PELKVGDRAPEAVVV---TKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQ   93 (171)
T ss_dssp             CCCCTTSBCCCEEEE---ETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHH
T ss_pred             CcCCCCCcCCceEEE---CCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHH
Confidence            345789999999998   55999999999999999999999999999999999999999999  7899999999999999


Q ss_pred             HHHhcCccccCCCCCc-ceeEEec-CchHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+++       ++ +|+++.| +++++ ++||+...+   .|.+.|++||||++|+|++++..
T Consensus        94 ~~~~~~~-------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~  151 (171)
T 2yzh_A           94 KRFCESF-------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLV  151 (171)
T ss_dssp             HHHHHHT-------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHc-------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeC
Confidence            9999876       78 8999999 88999 999997543   23468999999999999998863

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.92  E-value=4.6e-25  Score=193.35  Aligned_cols=137  Identities=39%  Similarity=0.716  Sum_probs=118.3

Q ss_pred             cCCCCCCccEEEeeecCcc--ceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         52 NLSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g--~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++|+++|+|++++. .++|  ++++|+++ +||++||+|||++|||+|+.++|.|++++++|+++|+++++||.|+++.+
T Consensus         1 ~~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~   79 (192)
T 2h01_A            1 AFQGQAPSFKAEAV-FGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTH   79 (192)
T ss_dssp             CCSSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCcCCCcEeEee-ecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHH
Confidence            47999999999764 2257  89999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+.+.+..+.++++||++.|.+++++++||+.. +.|     ...|++||||++|+|+....|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g-----~~~P~~~liD~~G~i~~~~~g~  140 (192)
T 2h01_A           80 LAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NES-----VALRAFVLIDKQGVVQHLLVNN  140 (192)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTT-----EECCEEEEECTTSBEEEEEEGG
T ss_pred             HHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCC-----ceeeEEEEEcCCCEEEEEEeCC
Confidence            999987654444446899999999999999999965 322     3467899999999998765553

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.92  E-value=1.1e-25  Score=193.58  Aligned_cols=131  Identities=21%  Similarity=0.251  Sum_probs=114.0

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+.+|+++|+|++++.   +|++++|++++||++||+||+++|||+|+.+++.|++++++|  .++++++||.|+++.+
T Consensus        19 ~~l~~g~~~P~f~l~~~---~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~   93 (171)
T 2yzh_A           19 PELKVGDRAPEAVVVTK---DLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQ   93 (171)
T ss_dssp             CCCCTTSBCCCEEEEET---TSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHH
T ss_pred             CcCCCCCcCCceEEECC---CCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHH
Confidence            35679999999999877   999999999999999999999999999999999999999999  7899999999999999


Q ss_pred             HhhccCccccCCCCcc-ceeEEee-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        129 LAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~p~l~D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++|.+.+       ++ +||+++| .++++ ++||+...+.+ ..| ...|++||||++|+|+....|
T Consensus        94 ~~~~~~~-------~~~~~~~l~D~~~~~~-~~~gv~~~~~~-~~g-~~~p~~~liD~~G~i~~~~~~  151 (171)
T 2yzh_A           94 KRFCESF-------NIQNVTVASDFRYRDM-EKYGVLIGEGA-LKG-ILARAVFIIDKEGKVAYVQLV  151 (171)
T ss_dssp             HHHHHHT-------TCCSSEEEECTTTCGG-GGGTCBBCSST-TTT-SBCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHc-------CCCCeEEeecCccCcH-HHhCCEecccc-cCC-ceeeEEEEEcCCCeEEEEEeC
Confidence            9998853       77 8999999 88999 99999765421 112 346889999999999977655

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.92  E-value=7.4e-25  Score=191.16  Aligned_cols=135  Identities=27%  Similarity=0.493  Sum_probs=118.0

Q ss_pred             ccCCCCCCccEEEeeecCccc----eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLK----EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~----~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      +++|+++|+|++.+.   +|+    +++|++++||++||+|||++|||+|+.++|.|++++++|+++++++++||.|+++
T Consensus         1 ~~~G~~~P~f~l~~~---~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~   77 (187)
T 1we0_A            1 SLIGTEVQPFRAQAF---QSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHF   77 (187)
T ss_dssp             CCTTCBCCCCEEEEE---CSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCCCcCCCeEEecc---CCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence            368999999999988   788    9999999999999999999999999999999999999999889999999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+++|.+.+...   .+++||++.|.++++++.||+.....|     ...|++||||++|+|+....|..
T Consensus        78 ~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~~~~~g-----~~~P~~~lid~~G~i~~~~~g~~  139 (187)
T 1we0_A           78 VHKAWHENSPAV---GSIEYIMIGDPSQTISRQFDVLNEETG-----LADRGTFIIDPDGVIQAIEINAD  139 (187)
T ss_dssp             HHHHHHHSCHHH---HTCCSEEEECTTCHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEEEEECT
T ss_pred             HHHHHHHHhccc---cCCCceEEECCchHHHHHhCCCcCCCC-----ceeeEEEEECCCCeEEEEEecCC
Confidence            999998864111   147899999999999999999755422     35689999999999998776654

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.92  E-value=2.2e-25  Score=202.26  Aligned_cols=143  Identities=25%  Similarity=0.443  Sum_probs=121.6

Q ss_pred             cccCCCCCCccEEEeeecCccceEEc-ccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKL-SDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l-~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      ++.+|+++|+|++++.   +| +++| +++  +||++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+
T Consensus         4 ~~~iG~~aPdF~l~~~---~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~   79 (249)
T 3a2v_A            4 IPLIGERFPEMEVTTD---HG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVF   79 (249)
T ss_dssp             ECCTTSBCCCEEEEET---TE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             cCCCCCCCCCeEEEcC---CC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHH
Confidence            5679999999999887   77 7999 999  999988888889999999999999999999999999999999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      .+.+|.+.+.+..+. +++||+++|.++++++.||+.....    |....|++||||++|+|+....|   +...|++
T Consensus        80 ~~~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~----g~~~~p~~fIID~dG~I~~~~~~---~~~~gr~  149 (249)
T 3a2v_A           80 SHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAES----ATHTVRGVFIVDARGVIRTMLYY---PMELGRL  149 (249)
T ss_dssp             HHHHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTC----SSSCCEEEEEECTTSBEEEEEEE---CTTBCCC
T ss_pred             HHHHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccC----CCcccceEEEECCCCeEEEEEec---CCcccch
Confidence            999998866543222 7899999999999999999976553    33467899999999999866544   4445554

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.92  E-value=3e-25  Score=201.62  Aligned_cols=137  Identities=18%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             cccCCCCCCccEEEeeecCccc--eEEccc-cCCCeEEEEEeeCCCCCCch-HHHHHHHHhHHHHHhCCc-EEEEEeCCC
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLK--EIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINT-EVVAASVDS  124 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~--~~~l~~-~~gk~vvl~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~v-~vi~Vs~d~  124 (384)
                      ++++|+++|+|++++..  +|+  +++|++ ++||++||+|||++|||+|+ .|+|.|++++++|+++|+ ++++||.|+
T Consensus         2 ~~~~G~~aP~f~l~~~~--~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~   79 (241)
T 1nm3_A            2 SSMEGKKVPQVTFRTRQ--GDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVND   79 (241)
T ss_dssp             -CCTTSBCCCCEEEEEE--TTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred             CccCCCCCCCeEEEccc--CCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCC
Confidence            56799999999998752  355  899999 89999999999999999999 999999999999999999 999999999


Q ss_pred             HHhHHhhccCccccCCCCccc-eeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~-~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++.+++|.+..       +++ ||+++|.+++++++||+.........+....|++||| ++|+|+....|..
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~  144 (241)
T 1nm3_A           80 TFVMNAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPN  144 (241)
T ss_dssp             HHHHHHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCS
T ss_pred             HHHHHHHHHhc-------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEecc
Confidence            99999999853       665 9999999999999999975442100111244788999 9999987766543

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.92  E-value=1.8e-25  Score=189.83  Aligned_cols=131  Identities=19%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCC--eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK--YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk--~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      ..+.+|+++|+|++++.   +|++++|++++||  ++||+||+++|||+|+.++|.|++++++|++++ ++++||.|+++
T Consensus         5 ~~~~~G~~~P~f~l~~~---~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~   80 (159)
T 2a4v_A            5 NELEIGDPIPDLSLLNE---DNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVT   80 (159)
T ss_dssp             TCCCTTCBCCSCEEECT---TSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHH
T ss_pred             CcCCCCCCCCCeEEECC---CCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHH
Confidence            35679999999999776   9999999999987  899999999999999999999999999999889 99999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+++|.+..       +++||+++|.+++++++||+...+.   .|  ..+++||| ++|+|+....|..
T Consensus        81 ~~~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~p~---~g--~~~~~~li-~~G~i~~~~~g~~  137 (159)
T 2a4v_A           81 SQKKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPL---SG--SIRSHFIF-VDGKLKFKRVKIS  137 (159)
T ss_dssp             HHHHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSS---SC--BCCEEEEE-ETTEEEEEEESCC
T ss_pred             HHHHHHHHh-------CCCceEEECCccHHHHHhCCccccc---CC--ccceEEEE-cCCEEEEEEccCC
Confidence            999998853       7899999999999999999976541   12  24578999 9999998776654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.92  E-value=2.5e-24  Score=187.72  Aligned_cols=133  Identities=26%  Similarity=0.441  Sum_probs=118.5

Q ss_pred             CCCCCCCCceeeeEEcCcce----eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        242 FVSKPAPFWQGTAVVDGQLK----EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~----~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      .+|+.+|+|++++.   +|+    ++++++++||++||+||+++||++|+.++|.|++++++|++++++|++||.|+++.
T Consensus         2 ~~G~~~P~f~l~~~---~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~   78 (187)
T 1we0_A            2 LIGTEVQPFRAQAF---QSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFV   78 (187)
T ss_dssp             CTTCBCCCCEEEEE---CSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCcCCCeEEecc---CCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence            47899999999966   788    99999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +++|.+.+....   +++|+++.|.++.+++.||+.....+.+.|++||||++|+|++.+...
T Consensus        79 ~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~  138 (187)
T 1we0_A           79 HKAWHENSPAVG---SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINA  138 (187)
T ss_dssp             HHHHHHSCHHHH---TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHHhcccc---CCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecC
Confidence            999998763211   478999999999999999996555455899999999999999988653

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.92  E-value=2e-24  Score=190.20  Aligned_cols=139  Identities=36%  Similarity=0.657  Sum_probs=119.7

Q ss_pred             ccCCCCCCccEEEeeecCccc---eEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~---~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      +++|+++|+|++++. .++|+   +++|+++ +||++||+||+++|||+|+.++|.|++++++|+++++++++||.|+++
T Consensus         1 ~~~G~~~P~f~l~~~-~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~   79 (198)
T 1zof_A            1 MVVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ   79 (198)
T ss_dssp             CCTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCCCcCCceEeecc-cCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence            368999999999764 22577   9999999 999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+++|.+.+.++.+..+++||++.|.+++++++||+.... |     ...|++||||++|+|+....|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~-g-----~~~P~~~lid~~G~i~~~~~g~~  143 (198)
T 1zof_A           80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-A-----IALRGAFLIDKNMKVRHAVINDL  143 (198)
T ss_dssp             HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-T-----EECEEEEEEETTTEEEEEEEESS
T ss_pred             HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccC-C-----cccceEEEECCCCEEEEEEecCC
Confidence            9999998765443334789999999999999999996532 2     35688999999999997766643

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.92  E-value=5.3e-25  Score=186.90  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=114.1

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCC--eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGK--YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk--~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      .+.+|+.+|+|+++   |.+|+++++++++||  ++||+||+++|||+|+.++|.|++++++|++++ +|++||.|+++.
T Consensus         6 ~~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~   81 (159)
T 2a4v_A            6 ELEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTS   81 (159)
T ss_dssp             CCCTTCBCCSCEEE---CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHH
T ss_pred             cCCCCCCCCCeEEE---CCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHH
Confidence            35789999999998   569999999999987  899999989999999999999999999999889 999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|++++       +++||++.|.++++++.||+...+.....|++||| ++|+|++++..
T Consensus        82 ~~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g  135 (159)
T 2a4v_A           82 QKKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVK  135 (159)
T ss_dssp             HHHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEES
T ss_pred             HHHHHHHh-------CCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEcc
Confidence            99999876       78999999999999999999654311146689999 99999998864

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.92  E-value=3e-24  Score=189.01  Aligned_cols=136  Identities=38%  Similarity=0.651  Sum_probs=119.8

Q ss_pred             CCCCCCCCceeeeEEcCcce---eeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        242 FVSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~---~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      .+|+.+|+|++++. ..+|+   +++++++ +||++||+||+++||++|+.++|.|++++++|++++++|++||.|+++.
T Consensus         2 ~~G~~~P~f~l~~~-~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~   80 (198)
T 1zof_A            2 VVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV   80 (198)
T ss_dssp             CTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCcCCceEeecc-cCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence            47999999999843 22788   9999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|.+.++++.+..+++|+++.|.++.+++.||+... .|.+.|++||||++|+|++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g  141 (198)
T 1zof_A           81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVIN  141 (198)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHHhhhhcccccCceeEEEECCchHHHHHhCCccc-CCcccceEEEECCCCEEEEEEec
Confidence            99999986554433488999999999999999999542 23489999999999999998764

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.92  E-value=1.4e-24  Score=192.92  Aligned_cols=128  Identities=20%  Similarity=0.144  Sum_probs=113.3

Q ss_pred             ccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCch-----HhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        238 RAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP-----TEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       238 ~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~-----~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      +..+.+|+.+|+|+++   |.+|+.++|++++||++||+||++.|||+|.     .|++.|+++   |  +|+.||+||.
T Consensus        19 g~~l~vG~~APdFtL~---d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~   90 (224)
T 3keb_A           19 GDFPRKGDYLPSFMLV---DDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITV   90 (224)
T ss_dssp             SCCCCTTCBCCCCEEE---ETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEES
T ss_pred             cCcCCCCCCCCCeEEE---CCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEEC
Confidence            3445799999999998   5599999999999999999999888899999     999999888   4  7899999999


Q ss_pred             CCHHhHHHHhcCccccCCCCCc-ceeEEecC-chHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEecC
Q psy17178        313 DSHFTHLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       313 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      |+++.+++|++.+       ++ +|++++|. ++.++++||+....   .|...|++||||++|+|++.+...
T Consensus        91 Ds~~~~~~f~~~~-------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~  156 (224)
T 3keb_A           91 DSPSSLARARHEH-------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLA  156 (224)
T ss_dssp             SCHHHHHHHHHHH-------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECS
T ss_pred             CCHHHHHHHHHHc-------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecC
Confidence            9999999999987       77 79999998 69999999997643   345689999999999999988643

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.92  E-value=5.4e-25  Score=189.38  Aligned_cols=139  Identities=13%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             cccCCCCCCccEEEeee-cCcc-----ceEEcccc-CCCeEEEEEeeCCCCCCchHH-HHHHHHhHHHHHhCCcE-EEEE
Q psy17178         50 SKNLSKPAPFWQGTAVV-DGQL-----KEIKLSDY-YGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTE-VVAA  120 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~-~~~g-----~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~v~-vi~V  120 (384)
                      +..+|+++|+|++++.. +++|     ++++|+++ +||++||.||+++|||+|+.| +|.|++++++|+++|++ |++|
T Consensus         6 g~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~I   85 (171)
T 2pwj_A            6 GTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICV   85 (171)
T ss_dssp             ----CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEE
T ss_pred             cccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            34577899999998752 1235     89999997 998777776669999999999 99999999999999999 9999


Q ss_pred             eCCCHHhHHhhccCccccCCCCc--cceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        121 SVDSHFTHLAWVNTPRKEGGLGK--LKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       121 s~d~~~~~~~~~~~~~~~~~~~~--~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |.|+++.+++|.+..       +  ++||+++|.+++++++||+.........|....+.+|+|| +|+|+....|..
T Consensus        86 s~d~~~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~  155 (171)
T 2pwj_A           86 AINDPYTVNAWAEKI-------QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEES  155 (171)
T ss_dssp             ESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSS
T ss_pred             eCCCHHHHHHHHHHh-------CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecC
Confidence            999999999998853       5  3799999999999999999754311011333346788889 999998776643

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.91  E-value=4.8e-25  Score=198.67  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=116.6

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +.+|+.+|+|++++.   +| ++++++++|| ++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+.+.++
T Consensus         3 l~iG~~aPdF~l~~~---~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~   78 (233)
T 2v2g_A            3 ITLGEVFPNFEADST---IG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHK   78 (233)
T ss_dssp             CCTTCBCCCCEEEET---TC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCCCCCCcEEecC---CC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHH
Confidence            468999999999854   88 9999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCC-CcceeEEecCchHHHHHhCceecC----C--CceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLG-KLKIPLLSDLTHKISLDYGVYLSD----Q--GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~~----~--~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++.+++..+.+ +++||++.|.+++++++||+...+    .  +...|++||||++|+|++++..
T Consensus        79 ~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~  145 (233)
T 2v2g_A           79 EWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILY  145 (233)
T ss_dssp             HHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEec
Confidence            9998554321111 478999999999999999997432    1  2468999999999999998864

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.91  E-value=2.6e-24  Score=189.08  Aligned_cols=135  Identities=32%  Similarity=0.539  Sum_probs=117.7

Q ss_pred             cccCCCCCCccEEEeeecCc-------------c--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQ-------------L--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  114 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~-------------g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~  114 (384)
                      .+.+|+++|+|++++.   +             |  ++++|++++||++||+|||++|||+|+.++|.|++++++|++++
T Consensus         3 ~l~~G~~~P~f~l~~~---~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~   79 (195)
T 2bmx_A            3 LLTIGDQFPAYQLTAL---IGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD   79 (195)
T ss_dssp             BCCTTCBCCCCEEEEE---CSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT
T ss_pred             cCCCCCcCCCcCcccc---cccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence            4679999999999987   4             6  89999999999999999999999999999999999999999889


Q ss_pred             cEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       115 v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +++++|+.|+++.+++|.+.+.   ...+++||++.|.++++++.||+... .|     ...|++||||++|+|+....|
T Consensus        80 v~vv~Vs~d~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~v~~~-~g-----~~~P~~~lid~~G~i~~~~~g  150 (195)
T 2bmx_A           80 AQILGVSIDSEFAHFQWRAQHN---DLKTLPFPMLSDIKRELSQAAGVLNA-DG-----VADRVTFIVDPNNEIQFVSAT  150 (195)
T ss_dssp             EEEEEEESSCHHHHHHHHHHCT---TGGGCCSCEEECTTSHHHHHHTCBCT-TS-----SBCEEEEEECTTSBEEEEEEE
T ss_pred             CEEEEEECCCHHHHHHHHHHhc---cccCCceeEEeCCchHHHHHhCCccc-CC-----CccceEEEEcCCCeEEEEEec
Confidence            9999999999999999987541   12267899999999999999999654 22     246789999999999987766


Q ss_pred             ee
Q psy17178        195 AL  196 (384)
Q Consensus       195 ~~  196 (384)
                      ..
T Consensus       151 ~~  152 (195)
T 2bmx_A          151 AG  152 (195)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.91  E-value=2.1e-24  Score=183.12  Aligned_cols=130  Identities=27%  Similarity=0.410  Sum_probs=116.0

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +.+|+.+|+|++.   |.+|+.+++++++|| ++||+||+++||++|+.+++.|++++++++++++++++||.|+++.++
T Consensus         9 ~~~G~~~p~f~l~---~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~   85 (160)
T 1xvw_A            9 LNVGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK   85 (160)
T ss_dssp             CCTTSBCCCCEEE---CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred             CCCCCCCCCeEeE---cCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHH
Confidence            5789999999998   559999999999998 999999889999999999999999999998889999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecC--chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|++++       +++|+++.|.  ++.+++.||+.....+.+.|++||||++|+|++.+...
T Consensus        86 ~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~  141 (160)
T 1xvw_A           86 IWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQ  141 (160)
T ss_dssp             HHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECC
T ss_pred             HHHHhc-------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecC
Confidence            999887       8899999995  89999999996443233334999999999999988753

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.91  E-value=6.2e-25  Score=186.38  Aligned_cols=131  Identities=27%  Similarity=0.437  Sum_probs=115.5

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      +.+|+++|+|++.+.   +|++++|++++|| ++||+||+++|||+|+.+++.|+++++++++.++++++|+.|+++.++
T Consensus         9 ~~~G~~~p~f~l~~~---~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~   85 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQ---NQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK   85 (160)
T ss_dssp             CCTTSBCCCCEEECT---TSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred             CCCCCCCCCeEeEcC---CCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHH
Confidence            789999999999776   9999999999998 999999999999999999999999999998889999999999999999


Q ss_pred             hhccCccccCCCCccceeEEeeC--cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~--~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|.+..       +++||++.|.  ++++++.||+.....    + ...+++||||++|+|+....|..
T Consensus        86 ~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~~~~~----~-~p~~~~~lid~~G~i~~~~~g~~  142 (160)
T 1xvw_A           86 IWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQA----G-IANRGTFVVDRSGIIRFAEMKQP  142 (160)
T ss_dssp             HHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTT----T-EECSEEEEECTTSBEEEEEECCT
T ss_pred             HHHHhc-------CCCceEEecCCcChHHHHHcCCccccC----C-CeeeeEEEECCCCeEEEEEecCC
Confidence            998854       7899999996  899999999964431    2 22348999999999998777653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.91  E-value=2.4e-24  Score=193.27  Aligned_cols=135  Identities=23%  Similarity=0.316  Sum_probs=116.3

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      +.+|+.+|+|++.+.   +| +++++|++|| ++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+.+.++
T Consensus         5 l~~G~~aP~F~l~~~---~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~   80 (224)
T 1prx_A            5 LLLGDVAPNFEANTT---VG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL   80 (224)
T ss_dssp             CCTTCBCCCCEEEET---TE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             CCCcCCCCCcEEecC---CC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            468999999999854   89 9999999997 777777669999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCC---CCcceeEEecCchHHHHHhCceecCC------CceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGL---GKLKIPLLSDLTHKISLDYGVYLSDQ------GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~gv~~~~~------~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.+.+++..++   .+++||++.|.+++++++||+...+.      ..+.|++||||++|+|++++..
T Consensus        81 ~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~  149 (224)
T 1prx_A           81 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILY  149 (224)
T ss_dssp             HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEec
Confidence            999875443321   27899999999999999999965421      2458999999999999998864

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.91  E-value=8.7e-25  Score=189.09  Aligned_cols=132  Identities=13%  Similarity=0.180  Sum_probs=111.4

Q ss_pred             ccCCCCCCccEEEeeec--------Ccc----ceEEccc-cCCCeEEEEEeeCCCCCCch-HHHHHHHHhHHHH-HhCCc
Q psy17178         51 KNLSKPAPFWQGTAVVD--------GQL----KEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEF-HQINT  115 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~--------~~g----~~~~l~~-~~gk~vvl~f~~~~~cp~C~-~~~~~l~~~~~~~-~~~~v  115 (384)
                      +++|+++|+|++++...        .+|    ++++|++ ++||++||+|||+.|||+|. .|++.|++.+++| ++.|+
T Consensus         1 l~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~   80 (182)
T 1xiy_A            1 MKENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF   80 (182)
T ss_dssp             CCTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred             CCCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            36899999999987311        145    7999999 59999999999999999999 9999999999999 99999


Q ss_pred             E-EEEEeCCCHHhHHhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCC--CCcccceeEEEEEEEecCCCcccc
Q psy17178        116 E-VVAASVDSHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQ--GPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       116 ~-vi~Vs~d~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~--g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      + |++||.|+++++++|.+..       ++ +||+++|++++++++||+..+..  |  .|....|++|||| +|+|+..
T Consensus        81 ~~V~gvS~D~~~~~~~~~~~~-------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G--~g~~~~R~tfvId-dG~V~~~  150 (182)
T 1xiy_A           81 DDIYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFF--MGMRPWRFVAIVE-NNILVKM  150 (182)
T ss_dssp             SEEEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGT--CCEEECCEEEEEE-TTEEEEE
T ss_pred             cEEEEEeCCCHHHHHHHHHHc-------CCCCceEEEeCchHHHHHhCCceeccccC--CCCceEEEEEEEc-CCEEEEE
Confidence            5 9999999999999999853       55 69999999999999999986542  2  1334568899999 9999876


Q ss_pred             c
Q psy17178        192 A  192 (384)
Q Consensus       192 ~  192 (384)
                      .
T Consensus       151 ~  151 (182)
T 1xiy_A          151 F  151 (182)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.91  E-value=2.2e-24  Score=184.50  Aligned_cols=130  Identities=24%  Similarity=0.315  Sum_probs=112.4

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+.+|+++|+|++.+.   +|++++|++++||++||+||+++|||+|+.++|.|++++++|  .++++++|+.|+++..
T Consensus        16 ~~~~~G~~~p~f~l~~~---~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~   90 (167)
T 2jsy_A           16 QEVKVGDQAPDFTVLTN---SLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQ   90 (167)
T ss_dssp             CCCCTTSCCCCCEEEBT---TCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGT
T ss_pred             CccCCCCcCCceEEECC---CCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHH
Confidence            35679999999999776   999999999999999999995445999999999999999999  7899999999998888


Q ss_pred             HhhccCccccCCCCcc-ceeEEee-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~p~l~D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+.+       ++ +||++.| .++++++.||+.....|     ...|++||||++|+|+....|.
T Consensus        91 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~v~~~~~g-----~~~p~~~lid~~G~i~~~~~g~  147 (167)
T 2jsy_A           91 ARWCGAN-------GIDKVETLSDHRDMSFGEAFGVYIKELR-----LLARSVFVLDENGKVVYAEYVS  147 (167)
T ss_dssp             SCCGGGS-------SCTTEEEEEGGGTCHHHHHTTCBBTTTC-----SBCCEEEEECTTSCEEEEEECS
T ss_pred             HHHHHhc-------CCCCceEeeCCchhHHHHHhCCccccCC-----ceeeEEEEEcCCCcEEEEEecC
Confidence            8888753       77 8999999 88999999999654322     3467899999999999776654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.91  E-value=1e-23  Score=185.21  Aligned_cols=134  Identities=31%  Similarity=0.484  Sum_probs=117.2

Q ss_pred             CCCCCCCCCceeeeEEcC-----------cc--eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEE
Q psy17178        241 PFVSKPAPFWQGTAVVDG-----------QL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV  307 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~-----------~g--~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~v  307 (384)
                      +.+|+.+|+|++++. +.           +|  +++++++++||++||+||+++||++|+.++|.|++++++|++++++|
T Consensus         4 l~~G~~~P~f~l~~~-~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v   82 (195)
T 2bmx_A            4 LTIGDQFPAYQLTAL-IGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   82 (195)
T ss_dssp             CCTTCBCCCCEEEEE-CSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             CCCCCcCCCcCcccc-cccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence            468999999999977 31           26  89999999999999999999999999999999999999999889999


Q ss_pred             EEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        308 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       308 v~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++||.|+++.+++|.+.+...   .+++|+++.|.++.+++.||+... .|.+.|++||||++|+|++++..
T Consensus        83 v~Vs~d~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g  150 (195)
T 2bmx_A           83 LGVSIDSEFAHFQWRAQHNDL---KTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSAT  150 (195)
T ss_dssp             EEEESSCHHHHHHHHHHCTTG---GGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHhccc---cCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEec
Confidence            999999999999998875221   268899999999999999999533 23389999999999999998864

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.91  E-value=4.6e-24  Score=182.45  Aligned_cols=128  Identities=22%  Similarity=0.255  Sum_probs=113.6

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCC-CcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF-TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~-c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      ....+|+.+|+|+++   |.+|+++++++++||++||+|| ++| |++|+.++|.|+++++++  .++++++||.|+++.
T Consensus        16 ~~~~~G~~~p~f~l~---~~~G~~~~l~~~~gk~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~   89 (167)
T 2jsy_A           16 QEVKVGDQAPDFTVL---TNSLEEKSLADMKGKVTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFA   89 (167)
T ss_dssp             CCCCTTSCCCCCEEE---BTTCCEEEHHHHTTSCEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGG
T ss_pred             CccCCCCcCCceEEE---CCCCCEeeHHHhCCCeEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHH
Confidence            345789999999998   5599999999999999999999 666 999999999999999999  789999999999888


Q ss_pred             HHHHhcCccccCCCCCc-ceeEEec-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .++|.+++       ++ +||++.| .++.+++.||+...+.|...|++||||++|+|++++..
T Consensus        90 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g  146 (167)
T 2jsy_A           90 QARWCGAN-------GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYV  146 (167)
T ss_dssp             TSCCGGGS-------SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEEC
T ss_pred             HHHHHHhc-------CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEec
Confidence            88888765       77 8999999 88999999999665444557999999999999998864

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.91  E-value=1.4e-23  Score=179.50  Aligned_cols=133  Identities=19%  Similarity=0.204  Sum_probs=117.6

Q ss_pred             CCCCCCCCCCceeeeEEc-------Ccceeeecccc-CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHHHhCCc-EEEE
Q psy17178        240 IPFVSKPAPFWQGTAVVD-------GQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVA  309 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d-------~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~~~~~v-~vv~  309 (384)
                      +.++|+.+|+.++..+.+       ...++++|+|+ +||++||+|||++|||+|.. |++.|++.+++|+++|+ +|++
T Consensus         9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vig   88 (176)
T 4f82_A            9 MIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWC   88 (176)
T ss_dssp             CCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            457999999999998854       34478999997 99999999999999999999 99999999999999999 9999


Q ss_pred             EeCCCHHhHHHHhcCccccCCCCCcc--eeEEecCchHHHHHhCceecC--CC--c-eeeEEEEEeCCceEEEEEecC
Q psy17178        310 ASVDSHFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSD--QG--H-TLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       310 Is~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~~~~--~~--~-~~p~~~lId~~G~i~~~~~~~  380 (384)
                      ||+|+++.+++|.++.       +++  ||+++|++++++++||+....  .|  . ..|.+||| ++|+|++++...
T Consensus        89 IS~D~~~~~~~f~~~~-------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~  158 (176)
T 4f82_A           89 VSVNDAFVMGAWGRDL-------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEA  158 (176)
T ss_dssp             EESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECC
T ss_pred             EeCCCHHHHHHHHHHh-------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcC
Confidence            9999999999999876       666  999999999999999997653  22  2 45899999 999999998865

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.91  E-value=1.1e-23  Score=181.90  Aligned_cols=126  Identities=24%  Similarity=0.341  Sum_probs=107.4

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      .+.+|+.+|+|+++   |.+|+.+++++++||++||+||++.||++|+.++|.|++++++   .+++||+||.|+++.++
T Consensus        17 ~l~~G~~~P~f~l~---~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~~~   90 (175)
T 1xvq_A           17 LPAVGSPAPAFTLT---GGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFAQK   90 (175)
T ss_dssp             CCCTTSBCCCCEEE---CTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHHHT
T ss_pred             CCCcCCcCCCeEEE---CCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHHHH
Confidence            35689999999998   5699999999999999999999444499999999999999987   78999999999998888


Q ss_pred             HHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecC---CCceeeEEEEEeCCceEEEEEe
Q psy17178        320 AWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSD---QGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~---~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|++++       ++ +|+++.|.++.+++.||+...+   .+...|++||||++|+|++.+.
T Consensus        91 ~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~  146 (175)
T 1xvq_A           91 RFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL  146 (175)
T ss_dssp             TCC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             HHHHHc-------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEE
Confidence            888765       77 8999999999999999996543   2355699999999999999886

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.91  E-value=8.5e-24  Score=191.99  Aligned_cols=130  Identities=19%  Similarity=0.304  Sum_probs=115.2

Q ss_pred             CCCCCCCCCceeeeEEcCcce--eeeccc-cCCCeEEEEEEeCCCCcCch-HhHHHHHHHHHHHHhCCc-EEEEEeCCCH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLK--EIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINT-EVVAASVDSH  315 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~--~~~l~d-~~Gk~vvl~F~~a~~c~~C~-~~~~~l~~l~~~~~~~~v-~vv~Is~d~~  315 (384)
                      +.+|+.+|+|+++++  .+|+  +++|++ ++||++||+||+++|||+|+ .|+|.|++++++|+++|+ +|++||.|++
T Consensus         3 ~~~G~~aP~f~l~~~--~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~   80 (241)
T 1nm3_A            3 SMEGKKVPQVTFRTR--QGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDT   80 (241)
T ss_dssp             CCTTSBCCCCEEEEE--ETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCH
T ss_pred             ccCCCCCCCeEEEcc--cCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCH
Confidence            468999999999964  1566  999999 89999999999999999999 999999999999999999 9999999999


Q ss_pred             HhHHHHhcCccccCCCCCcc-eeEEecCchHHHHHhCceecCC--Cc---eeeEEEEEeCCceEEEEEecC
Q psy17178        316 FTHLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQ--GH---TLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~gv~~~~~--~~---~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +.+++|.+++       +++ ||+++|++++++++||+.....  |.   ..|++||| ++|+|++.+...
T Consensus        81 ~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~  143 (241)
T 1nm3_A           81 FVMNAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEP  143 (241)
T ss_dssp             HHHHHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECC
T ss_pred             HHHHHHHHhc-------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEec
Confidence            9999999876       665 9999999999999999975432  22   56899999 999999988754

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.91  E-value=4e-24  Score=191.35  Aligned_cols=135  Identities=20%  Similarity=0.307  Sum_probs=114.8

Q ss_pred             CCCCCCCCCceeeeEEcC--cceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDG--QLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~--~g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      +.+|+.+|+|+++   +.  +| ++++++++|| ++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+.+.
T Consensus         3 l~iG~~aP~F~l~---~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~   78 (220)
T 1xcc_A            3 YHLGATFPNFTAK---ASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKES   78 (220)
T ss_dssp             CCTTCBCCCCEEC---BTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             CCCCCCCCCcEee---cccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence            4689999999998   55  78 9999999998 7777776699999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC------CceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ------GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~------~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|.+..++..+..+++||++.|.+++++++||+...+.      +...|++||||++|+|++++..
T Consensus        79 ~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~  146 (220)
T 1xcc_A           79 HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLY  146 (220)
T ss_dssp             HHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEec
Confidence            9999885432200117899999999999999999965321      1468999999999999998864

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.90  E-value=6e-24  Score=183.48  Aligned_cols=131  Identities=24%  Similarity=0.316  Sum_probs=108.7

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+.+|+++|+|++++.   +|+++++++++||++||+||+++|||+|+.++|.|++++++   .++++|+||.|+++..
T Consensus        16 ~~l~~G~~~P~f~l~~~---~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~~   89 (175)
T 1xvq_A           16 ELPAVGSPAPAFTLTGG---DLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFAQ   89 (175)
T ss_dssp             CCCCTTSBCCCCEEECT---TSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHHH
T ss_pred             CCCCcCCcCCCeEEECC---CCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHHH
Confidence            35679999999999776   99999999999999999999666699999999999999988   6899999999999988


Q ss_pred             HhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        129 LAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++|.+..       ++ +||++.|.+++++++||+...+.+ ..| ...|.+||||++|+|+....|
T Consensus        90 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~-~~g-~~~p~~~lid~~G~I~~~~~g  147 (175)
T 1xvq_A           90 KRFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGP-MAG-LLARAIVVIGADGNVAYTELV  147 (175)
T ss_dssp             TTCC-------------CEEEEECTTSSHHHHTTCBBCSST-TTT-SBCSEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHc-------CCCCceEeeCCHHHHHHHhCCcccccc-cCC-cccceEEEECCCCeEEEEEEC
Confidence            8888753       77 899999999999999999755311 122 345789999999999876653

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.90  E-value=1.9e-24  Score=204.02  Aligned_cols=118  Identities=22%  Similarity=0.208  Sum_probs=103.7

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  134 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~  134 (384)
                      .++|+|+|++.   +|++++|+||+||+|||+|||++|||+|+.|++.|++.    +..+++|+|||.|+++.+++|.+.
T Consensus         2 ak~p~F~l~~~---~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~~   74 (322)
T 4eo3_A            2 ARVKHFELLTD---EGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKEK   74 (322)
T ss_dssp             CBCCCCEEEET---TSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHHH
T ss_pred             CCCCCcEEECC---CcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHHh
Confidence            36899999887   99999999999999999999999999999999998752    335899999999999999999985


Q ss_pred             ccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        135 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       135 ~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      .       +++||+++|++++++++|||+...       ...|++||||++|+|+....
T Consensus        75 ~-------~l~fp~l~D~~~~v~~~ygv~~~~-------~~~r~tfiId~~G~i~~~~~  119 (322)
T 4eo3_A           75 N-------DLKVTLLSDPEGILHEFFNVLENG-------KTVRSTFLIDRWGFVRKEWR  119 (322)
T ss_dssp             H-------TCCSEEEECTTCHHHHHTTCEETT-------EECCEEEEECTTSBEEEEEE
T ss_pred             h-------CCceEEEEcCchHHHHhcCCCCCC-------cCccEEEEECCCCEEEEEEe
Confidence            3       899999999999999999996432       34588999999999986543

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.90  E-value=1.2e-23  Score=174.52  Aligned_cols=117  Identities=13%  Similarity=0.016  Sum_probs=108.1

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHH---HHHHHHhCCcEEEEEeCC-CHHh
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND---RLEEFHQINTEVVAASVD-SHFT  317 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~---l~~~~~~~~v~vv~Is~d-~~~~  317 (384)
                      .+|+.+|+|+++   |.+|+.+++++++||++||+|| ++||++|+.++|.|.+   +++++++.++.+++|+.| +++.
T Consensus         2 ~~G~~~p~f~l~---~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~   77 (142)
T 3ewl_A            2 NAGMKAADFTYV---TVHGDNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREE   77 (142)
T ss_dssp             CTTSBCCCCEEE---CTTCCEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHH
T ss_pred             CCCCcCCCCEEE---CCCCCEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHH
Confidence            479999999998   5599999999999999999999 9999999999999999   999999999999999998 5677


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHH--HhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .++|++++       +++|+++.|.++.+..  .||+      ..+|++||||++|+|++
T Consensus        78 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~  124 (142)
T 3ewl_A           78 WATKAVYM-------PQGWIVGWNKAGDIRTRQLYDI------RATPTIYLLDGRKRVIL  124 (142)
T ss_dssp             HHHHHTTS-------CTTCEEEECTTCHHHHTTCSCC------CSSSEEEEECTTCBEEE
T ss_pred             HHHHHHHc-------CCCcceeeCCccchhhHHHcCC------CCCCeEEEECCCCCEEe
Confidence            88888876       8999999999998877  8998      68999999999999997

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.90  E-value=8e-24  Score=191.99  Aligned_cols=136  Identities=28%  Similarity=0.495  Sum_probs=118.2

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeec-ccc--CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKL-SDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l-~d~--~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+.+|+.+|+|++++.   +| .+++ +++  +||++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+.+
T Consensus         4 ~~~iG~~aPdF~l~~~---~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~   79 (249)
T 3a2v_A            4 IPLIGERFPEMEVTTD---HG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVF   79 (249)
T ss_dssp             ECCTTSBCCCEEEEET---TE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             cCCCCCCCCCeEEEcC---CC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHH
Confidence            3568999999999855   78 7999 999  999877766669999999999999999999999999999999999999


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCc-eeeEEEEEeCCceEEEEEecC
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH-TLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~-~~p~~~lId~~G~i~~~~~~~  380 (384)
                      .+.+|.+.+++..+. +++||++.|.++++++.||+.....|. ..|++||||++|+|++++...
T Consensus        80 ~~~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~  143 (249)
T 3a2v_A           80 SHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYP  143 (249)
T ss_dssp             HHHHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEEC
T ss_pred             HHHHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecC
Confidence            999998876543332 789999999999999999997555443 789999999999999987643

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.90  E-value=3.7e-24  Score=178.20  Aligned_cols=121  Identities=13%  Similarity=0.084  Sum_probs=104.7

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH  318 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~  318 (384)
                      ...+|+.+|+|++ +.   +|+++++++++||++||+|| ++||++|..++|.|++++++|+++++.|++||.| +.+..
T Consensus         6 ~l~~G~~~P~f~l-~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~   80 (143)
T 4fo5_A            6 GVNPGDLAPRIEF-LG---NDAKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIF   80 (143)
T ss_dssp             SSSTTSBCCCCCC---------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHH
T ss_pred             ccCCcccCCceEE-cC---CCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHH
Confidence            3578999999999 66   89999999999999999999 9999999999999999999999889999999998 55677


Q ss_pred             HHHhcCccccCCCCCcce-eEEecCc---hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKLKI-PLLSDLT---HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~-~~~~D~~---~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++++++.       +++| +.+.|..   ..+++.||+      ...|++||||++|+|++++.
T Consensus        81 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  131 (143)
T 4fo5_A           81 TETVKID-------KLDLSTQFHEGLGKESELYKKYDL------RKGFKNFLINDEGVIIAANV  131 (143)
T ss_dssp             HHHHHHH-------TCCGGGEEECTTGGGSHHHHHTTG------GGCCCEEEECTTSBEEEESC
T ss_pred             HHHHHHh-------CCCCceeeecccccchHHHHHcCC------CCCCcEEEECCCCEEEEccC
Confidence            8888766       7888 8888875   688999999      68899999999999998654

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.90  E-value=1.8e-23  Score=173.76  Aligned_cols=121  Identities=11%  Similarity=-0.058  Sum_probs=108.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHH---HHHHHHhCCcEEEEEeCCCH-H
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND---RLEEFHQINTEVVAASVDSH-F  316 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~---l~~~~~~~~v~vv~Is~d~~-~  316 (384)
                      ..+|+.+|+|++++   .+|+.+++++++||++||+|| ++||++|+.++|.|++   +++++++.++.|++|+.|+. +
T Consensus         5 ~~~G~~ap~f~l~~---~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~   80 (142)
T 3eur_A            5 NRLGTKALNFTYTL---DSGVKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELD   80 (142)
T ss_dssp             TCTTSBCCCCEEEE---TTSCEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHH
T ss_pred             hcCCCccCCcEEEc---CCCCEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHH
Confidence            36899999999985   499999999999999999999 9999999999999999   99999999999999999864 5


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecCchH--HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDLTHK--ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ..+++++++       +.+|+.+.|.++.  +.+.|++      ...|++||||++|+|++...
T Consensus        81 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  131 (142)
T 3eur_A           81 EWKKHRNDF-------AKEWTNGYDKELVIKNKNLYDL------RAIPTLYLLDKNKTVLLKDA  131 (142)
T ss_dssp             HHHHHGGGS-------CTTSEEEECTTCHHHHTTCSCC------TTCSEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHhc-------ccccccccCccchhhhhhhcCC------CcCCeEEEECCCCcEEecCC
Confidence            667777765       7889999998865  6788998      68999999999999998654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=2.3e-23  Score=174.78  Aligned_cols=121  Identities=13%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecc--ccCCCeEEEEEEeCCCCcC--chHhHHHHHHHHHHH-HhCCcEEEEEeCCC-
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFV--CPTEILAFNDRLEEF-HQINTEVVAASVDS-  314 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~--d~~Gk~vvl~F~~a~~c~~--C~~~~~~l~~l~~~~-~~~~v~vv~Is~d~-  314 (384)
                      ..+|+.+|+|+++   |.+|++++++  +++||++||+|| ++||++  |+.++|.|++++++| +++++.+++|+.|+ 
T Consensus         5 l~~G~~~p~f~l~---~~~g~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~   80 (150)
T 3fw2_A            5 SEIGKYAPFFSLP---NAKGEKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVD   80 (150)
T ss_dssp             TSTTSBCCCCCEE---BTTCCEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSC
T ss_pred             ccCCCcCCccEeE---CCCCCEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCC
Confidence            4689999999998   5599999999  999999999999 899999  999999999999999 88899999999985 


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecC---chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++..++|++++       +++|+++.|.   ++.+.+.||+      ...|++||||++|+|++.+.
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  134 (150)
T 3fw2_A           81 KQQWKDAIKRD-------TLDWEQVCDFGGLNSEVAKQYSI------YKIPANILLSSDGKILAKNL  134 (150)
T ss_dssp             HHHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTC------CSSSEEEEECTTSBEEEESC
T ss_pred             HHHHHHHHHHh-------CCCceEEEcCcccchHHHHHcCC------CccCeEEEECCCCEEEEccC
Confidence            47788888766       8999999998   5799999999      68899999999999999764

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.90  E-value=2.3e-23  Score=179.18  Aligned_cols=131  Identities=13%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             CCCCCCCCceeeeEE-cCcc-----eeeecccc-CCCeEEEEEEeCCCCcCchHh-HHHHHHHHHHHHhCCcE-EEEEeC
Q psy17178        242 FVSKPAPFWQGTAVV-DGQL-----KEIKLSDY-YGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTE-VVAASV  312 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~-d~~g-----~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~v~-vv~Is~  312 (384)
                      .+|+.+|+|+++++. +.+|     +.++++++ +||++||.|++++|||+|+.| +|.|++++++|+++|++ |++||.
T Consensus         8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~   87 (171)
T 2pwj_A            8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAI   87 (171)
T ss_dssp             --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEES
T ss_pred             cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            467799999998541 0246     89999996 998555554449999999999 99999999999999999 999999


Q ss_pred             CCHHhHHHHhcCccccCCCCC--cceeEEecCchHHHHHhCceecCC----Cc-eeeEEEEEeCCceEEEEEecC
Q psy17178        313 DSHFTHLAWVNTPRKEGGLGK--LKIPLLSDLTHKISLDYGVYLSDQ----GH-TLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       313 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~gv~~~~~----~~-~~p~~~lId~~G~i~~~~~~~  380 (384)
                      |+++.+++|++++       +  .+||+++|++++++++||+.....    |. ..|++|+|| +|+|++++...
T Consensus        88 d~~~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~  154 (171)
T 2pwj_A           88 NDPYTVNAWAEKI-------QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEE  154 (171)
T ss_dssp             SCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred             CCHHHHHHHHHHh-------CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence            9999999999876       5  479999999999999999975432    21 367899999 99999988753

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.90  E-value=1.5e-23  Score=197.90  Aligned_cols=121  Identities=23%  Similarity=0.234  Sum_probs=108.3

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcC
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  324 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~  324 (384)
                      ..+|+|+|+   |.+|++++|+||+||++||+||++.|||+|..|++.|++.    ..++++|++||.|+++.+++|.++
T Consensus         2 ak~p~F~l~---~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~~   74 (322)
T 4eo3_A            2 ARVKHFELL---TDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKEK   74 (322)
T ss_dssp             CBCCCCEEE---ETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHHH
T ss_pred             CCCCCcEEE---CCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHHh
Confidence            368999999   5599999999999999999999999999999999988652    236899999999999999999988


Q ss_pred             ccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178        325 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       325 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      +       +++||+++|++++++++||++..  +...|+|||||++|+|+++|+.-.
T Consensus        75 ~-------~l~fp~l~D~~~~v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~~~v~  122 (322)
T 4eo3_A           75 N-------DLKVTLLSDPEGILHEFFNVLEN--GKTVRSTFLIDRWGFVRKEWRRVK  122 (322)
T ss_dssp             H-------TCCSEEEECTTCHHHHHTTCEET--TEECCEEEEECTTSBEEEEEESCC
T ss_pred             h-------CCceEEEEcCchHHHHhcCCCCC--CcCccEEEEECCCCEEEEEEeCCC
Confidence            7       89999999999999999999754  367899999999999999997643

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.90  E-value=1.6e-23  Score=187.39  Aligned_cols=122  Identities=16%  Similarity=0.078  Sum_probs=112.3

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCe-EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-----
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-----  312 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~-vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----  312 (384)
                      ....+|+.+|+|+++   |.+|+++++++++||+ +||+|| ++|||+|+.++|.|++++++|++++++||+|+.     
T Consensus        30 ~~l~~G~~aP~f~l~---~~~G~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~  105 (218)
T 3u5r_E           30 NSITLGTRAADFVLP---DAGGNLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQA  105 (218)
T ss_dssp             CCCCTTCBCCCCCEE---CTTCCEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTT
T ss_pred             CcCCCCCcCCCcEeE---CCCCCEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccc
Confidence            445799999999998   5599999999999995 999999 899999999999999999999999999999999     


Q ss_pred             ---CCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178        313 ---DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF  377 (384)
Q Consensus       313 ---d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~  377 (384)
                         |+++.+++|++++       +++|+++.|.++.+++.||+      ...|++||||++|+|+++.
T Consensus       106 ~~~d~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v------~~~P~~~liD~~G~i~~~g  160 (218)
T 3u5r_E          106 FPEETLERVGAEVKAY-------GYGFPYLKDASQSVAKAYGA------ACTPDFFLYDRERRLVYHG  160 (218)
T ss_dssp             CGGGSHHHHHHHHHHH-------TCCSCEEECTTCHHHHHHTC------CEESEEEEECTTCBEEEEE
T ss_pred             cccCCHHHHHHHHHHh-------CCCccEEECCccHHHHHcCC------CCCCeEEEECCCCcEEEec
Confidence               6778888998877       89999999999999999999      6889999999999999854

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.90  E-value=1.9e-23  Score=176.59  Aligned_cols=122  Identities=15%  Similarity=0.077  Sum_probs=110.2

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHh-HHHHHHHHHHHHhCCcEEEEEeC-------CC
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASV-------DS  314 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~v~vv~Is~-------d~  314 (384)
                      .|+.+|+|+++++ ..+|+++++++++||++||+|| ++||++|+.+ +|.|++++++|+++++.+++|+.       |+
T Consensus         2 ~g~~aP~f~l~~~-~~~g~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            2 NAMKAPELQIQQW-FNSATDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CCEECCCCCEEEE-ESCSSCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCceehhh-hcCCCccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC
Confidence            5788999999964 2468999999999999999999 9999999997 99999999999888999999996       47


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCch-----HHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTH-----KISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-----~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++.+++|++++       +++||++.|.++     .+++.||+      ..+|++||||++|+|++++..
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  136 (158)
T 3eyt_A           80 PISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQM------RGTPSLLLIDKAGDLRAHHFG  136 (158)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTC------CSSSEEEEECTTSEEEEEEES
T ss_pred             HHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCC------CCCCEEEEECCCCCEEEEEeC
Confidence            78889998876       889999999987     79999999      689999999999999997764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.89  E-value=6.2e-23  Score=172.86  Aligned_cols=124  Identities=16%  Similarity=0.033  Sum_probs=107.7

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH-hH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF-TH  318 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~-~~  318 (384)
                      ....|+.+|+|+++   |.+|+++++++++||++||+|| ++||++|+.++|.|++++++|+++++.|++|+.|+.+ ..
T Consensus         8 ~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~   83 (152)
T 2lrt_A            8 DKIKEASIIDIQLK---DLKGNTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFW   83 (152)
T ss_dssp             SSSCTTCSCCCCEE---BTTSCEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHH
T ss_pred             hhccCCCCCCeEEE---cCCCCEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHH
Confidence            34678999999998   5599999999999999999999 8999999999999999999999989999999998653 34


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchH---HHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCC
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHK---ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCD  383 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d  383 (384)
                      +++.+         .++|+++.|.++.   +.+.||+      ...|++||||++|+|++++. |..|
T Consensus        84 ~~~~~---------~~~~~~~~d~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~-g~~~  135 (152)
T 2lrt_A           84 KTSAD---------NLPWVCVRDANGAYSSYISLYNV------TNLPSVFLVNRNNELSARGE-NIKD  135 (152)
T ss_dssp             HHHHT---------TCSSEEEECSSGGGCHHHHHHTC------CSCSEEEEEETTTEEEEETT-TCSC
T ss_pred             HHHHh---------CCCceEEECCCCcchHHHHHcCc------ccCceEEEECCCCeEEEecC-CHHH
Confidence            44543         4689999999986   9999999      67899999999999999665 4444

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.89  E-value=9.6e-23  Score=175.04  Aligned_cols=131  Identities=11%  Similarity=0.120  Sum_probs=111.0

Q ss_pred             ccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCc-CchHhHHHHHHHHHHHHhCC--cEEEEEeCC-
Q psy17178        238 RAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQIN--TEVVAASVD-  313 (384)
Q Consensus       238 ~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~-~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d-  313 (384)
                      .....+|+.+|+|+++   |.+|+++++++++||++||+|| ++||+ +|+.+++.|+++++++++++  ++||+||.| 
T Consensus         4 ~~~l~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~   79 (174)
T 1xzo_A            4 QIKDPLNYEVEPFTFQ---NQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   79 (174)
T ss_dssp             CCCSCCCEECCCCEEE---CTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCcCccccccCCcEEE---cCCCCEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC
Confidence            3445789999999998   5599999999999999999999 99999 99999999999999999876  999999997 


Q ss_pred             ---CHHhHHHHhcCccccCCCCCcce---eEEecCchHHHHHhCc-----eecC-----CCceeeEEEEEeCCceEEEEE
Q psy17178        314 ---SHFTHLAWVNTPRKEGGLGKLKI---PLLSDLTHKISLDYGV-----YLSD-----QGHTLDKYCLECYKMVIVYWF  377 (384)
Q Consensus       314 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~gv-----~~~~-----~~~~~p~~~lId~~G~i~~~~  377 (384)
                         +++.+++|++++       +++|   +++.|.++.+.+.|++     ....     ...+.|++||||++|+|++++
T Consensus        80 ~~d~~~~~~~~~~~~-------~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~  152 (174)
T 1xzo_A           80 ENDKPKQLKKFAANY-------PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY  152 (174)
T ss_dssp             TTCCHHHHHHHHTTS-------CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE
T ss_pred             CCCCHHHHHHHHHHc-------CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEE
Confidence               578888998876       6777   9999988887777653     1110     114689999999999999987


Q ss_pred             ec
Q psy17178        378 ER  379 (384)
Q Consensus       378 ~~  379 (384)
                      ..
T Consensus       153 ~g  154 (174)
T 1xzo_A          153 NG  154 (174)
T ss_dssp             ES
T ss_pred             cC
Confidence            64

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.89  E-value=1.7e-23  Score=173.86  Aligned_cols=121  Identities=12%  Similarity=-0.046  Sum_probs=104.2

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHH---hHHHHHhCCcEEEEEeCCC-H
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND---RLEEFHQINTEVVAASVDS-H  125 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~---~~~~~~~~~v~vi~Vs~d~-~  125 (384)
                      ...+|+++|+|++++.   +|+.++|++++||++||+|| ++|||+|+.++|.|++   +++++++.++++++|+.|. .
T Consensus         4 ~~~~G~~ap~f~l~~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~   79 (142)
T 3eur_A            4 KNRLGTKALNFTYTLD---SGVKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL   79 (142)
T ss_dssp             TTCTTSBCCCCEEEET---TSCEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCH
T ss_pred             hhcCCCccCCcEEEcC---CCCEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCH
Confidence            3569999999999887   99999999999999999999 9999999999999999   9999999999999999987 3


Q ss_pred             HhHHhhccCccccCCCCccceeEEeeCcch--hHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHK--ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~--~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      +..++|.+.   +    +++|+.+.|.++.  +++.|++.           ..|++||||++|+|+...
T Consensus        80 ~~~~~~~~~---~----~~~~~~~~d~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           80 DEWKKHRND---F----AKEWTNGYDKELVIKNKNLYDLR-----------AIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             HHHHHHGGG---S----CTTSEEEECTTCHHHHTTCSCCT-----------TCSEEEEECTTCBEEEEE
T ss_pred             HHHHHHHHh---c----ccccccccCccchhhhhhhcCCC-----------cCCeEEEECCCCcEEecC
Confidence            555666654   3    7899999998875  68888882           245789999999997543

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.89  E-value=9.2e-23  Score=174.26  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=115.8

Q ss_pred             cCCCCCCCCCCceeeeEEcCc-ceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcE-EEEEeCCCH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQ-LKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE-VVAASVDSH  315 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~-g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~-vv~Is~d~~  315 (384)
                      .+.++|+.+|+|+++   +.+ ++.++|+++ +||++||+|||+.|||.|..|++.+++.+++|++.|++ |++||.|++
T Consensus        12 ~~~~vGd~aPdf~l~---~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~   88 (171)
T 2xhf_A           12 SPIKVGDIIPDVLVY---EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDP   88 (171)
T ss_dssp             CCCCTTCBCCCCEEE---CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCH
T ss_pred             CcccCcCCCCCeEEe---cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCH
Confidence            345799999999998   223 289999995 99999999999999999999999999999999999996 999999999


Q ss_pred             HhHHHHhcCccccCCCCCc--ceeEEecCchHHHHHhCceecCC----C-ceeeEEEEEeCCceEEEEEecCC
Q psy17178        316 FTHLAWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQ----G-HTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~~~~----~-~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      ..+++|.+..       ++  +|++++|++++++++||+.....    + ...+.+|||| +|+|++.+...+
T Consensus        89 ~~~~~w~~~~-------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~  153 (171)
T 2xhf_A           89 FVMAAWGKTV-------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPD  153 (171)
T ss_dssp             HHHHHHHHHH-------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTS
T ss_pred             HHHHHHHHhc-------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCC
Confidence            9999999876       55  89999999999999999975531    1 3578899999 999999987643

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.89  E-value=1.9e-23  Score=173.43  Aligned_cols=117  Identities=15%  Similarity=0.061  Sum_probs=104.0

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHH---hHHHHHhCCcEEEEEeCC-CHHh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND---RLEEFHQINTEVVAASVD-SHFT  127 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~---~~~~~~~~~v~vi~Vs~d-~~~~  127 (384)
                      ++|+++|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|.+   +++++++.++++++|+.| +.+.
T Consensus         2 ~~G~~~p~f~l~~~---~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~   77 (142)
T 3ewl_A            2 NAGMKAADFTYVTV---HGDNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREE   77 (142)
T ss_dssp             CTTSBCCCCEEECT---TCCEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHH
T ss_pred             CCCCcCCCCEEECC---CCCEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHH
Confidence            58999999999877   99999999999999999999 9999999999999998   999999999999999998 4667


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHH--hhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~--~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      .++|.+..       +++||++.|.++.+..  .||+.           ..|++|+||++|+|+.
T Consensus        78 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~  124 (142)
T 3ewl_A           78 WATKAVYM-------PQGWIVGWNKAGDIRTRQLYDIR-----------ATPTIYLLDGRKRVIL  124 (142)
T ss_dssp             HHHHHTTS-------CTTCEEEECTTCHHHHTTCSCCC-----------SSSEEEEECTTCBEEE
T ss_pred             HHHHHHHc-------CCCcceeeCCccchhhHHHcCCC-----------CCCeEEEECCCCCEEe
Confidence            77777743       7899999999998877  88882           3457899999999975

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.89  E-value=7.7e-23  Score=171.96  Aligned_cols=121  Identities=17%  Similarity=0.101  Sum_probs=109.9

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~  319 (384)
                      ..+|+.+|+|++.   |.+|+.+++++++||++||+|| ++||++|+.++|.|++++++++++++.+++|+.| +.+..+
T Consensus         3 l~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~   78 (152)
T 2lrn_A            3 LATGSVAPAITGI---DLKGNSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWK   78 (152)
T ss_dssp             SCTTEECCCCEEE---CSSSCEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHH
T ss_pred             ccCCCcCCCceeE---cCCCCEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHH
Confidence            3579999999998   5599999999999999999999 9999999999999999999999889999999998 466777


Q ss_pred             HHhcCccccCCCCCcceeEEecC---chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|+++.       +++|+++.|.   ...+.+.||+      ..+|++||||++|+|++.+.
T Consensus        79 ~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  127 (152)
T 2lrn_A           79 KAIEED-------KSYWNQVLLQKDDVKDVLESYCI------VGFPHIILVDPEGKIVAKEL  127 (152)
T ss_dssp             HHHHHH-------TCCSEEEEECHHHHHHHHHHTTC------CSSCEEEEECTTSEEEEECC
T ss_pred             HHHHHh-------CCCCeEEecccchhHHHHHHhCC------CcCCeEEEECCCCeEEEeeC
Confidence            787765       7899999999   6899999999      68899999999999999764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.89  E-value=9.4e-24  Score=188.84  Aligned_cols=120  Identities=16%  Similarity=0.104  Sum_probs=108.3

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCe-EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC----
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV----  122 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~-vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~----  122 (384)
                      ...+++|+++|+|++++.   +|++++|++++||+ +||+|| ++|||+|+.++|.|++++++|+++|+++|+|+.    
T Consensus        29 ~~~l~~G~~aP~f~l~~~---~G~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~  104 (218)
T 3u5r_E           29 SNSITLGTRAADFVLPDA---GGNLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQ  104 (218)
T ss_dssp             CCCCCTTCBCCCCCEECT---TCCEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTT
T ss_pred             CCcCCCCCcCCCcEeECC---CCCEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccc
Confidence            456889999999999877   99999999999995 999999 899999999999999999999999999999999    


Q ss_pred             ----CCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        123 ----DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       123 ----d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                          |+++..++|.+..       +++||++.|.++++++.||+           ..+|++||||++|+|+
T Consensus       105 ~~~~d~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v-----------~~~P~~~liD~~G~i~  157 (218)
T 3u5r_E          105 AFPEETLERVGAEVKAY-------GYGFPYLKDASQSVAKAYGA-----------ACTPDFFLYDRERRLV  157 (218)
T ss_dssp             TCGGGSHHHHHHHHHHH-------TCCSCEEECTTCHHHHHHTC-----------CEESEEEEECTTCBEE
T ss_pred             ccccCCHHHHHHHHHHh-------CCCccEEECCccHHHHHcCC-----------CCCCeEEEECCCCcEE
Confidence                5677788887753       78999999999999999999           3456889999999997

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.89  E-value=5.6e-24  Score=177.09  Aligned_cols=121  Identities=12%  Similarity=0.131  Sum_probs=100.7

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHh
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT  127 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~  127 (384)
                      ..+++|+++|+|++ +.   +|++++|++++||++||+|| ++||++|+.++|.|++++++|+++++++++||.|+ .+.
T Consensus         5 ~~l~~G~~~P~f~l-~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~   79 (143)
T 4fo5_A            5 EGVNPGDLAPRIEF-LG---NDAKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESI   79 (143)
T ss_dssp             BSSSTTSBCCCCCC---------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHH
T ss_pred             cccCCcccCCceEE-cC---CCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHH
Confidence            45789999999999 77   89999999999999999999 99999999999999999999998899999999995 556


Q ss_pred             HHhhccCccccCCCCccce-eEEeeCc---chhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        128 HLAWVNTPRKEGGLGKLKI-PLLSDLT---HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~-p~l~D~~---~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      .++|.+.   +    +++| +++.|..   .++++.||+.           ..|++||||++|+|+...
T Consensus        80 ~~~~~~~---~----~~~~~~~~~d~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           80 FTETVKI---D----KLDLSTQFHEGLGKESELYKKYDLR-----------KGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HHHHHHH---H----TCCGGGEEECTTGGGSHHHHHTTGG-----------GCCCEEEECTTSBEEEES
T ss_pred             HHHHHHH---h----CCCCceeeecccccchHHHHHcCCC-----------CCCcEEEECCCCEEEEcc
Confidence            6677664   3    7899 8899885   5799999982           235678999999998643

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=3.5e-23  Score=173.64  Aligned_cols=121  Identities=13%  Similarity=0.210  Sum_probs=106.8

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcc--ccCCCeEEEEEeeCCCCCC--chHHHHHHHHhHHHH-HhCCcEEEEEeCCC
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFV--CPTEILAFNDRLEEF-HQINTEVVAASVDS  124 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~--~~~gk~vvl~f~~~~~cp~--C~~~~~~l~~~~~~~-~~~~v~vi~Vs~d~  124 (384)
                      .+++|+++|+|++++.   +|++++|+  +++||++||+|| ++|||+  |+.++|.|++++++| +++++++++|+.|+
T Consensus         4 ~l~~G~~~p~f~l~~~---~g~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~   79 (150)
T 3fw2_A            4 KSEIGKYAPFFSLPNA---KGEKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV   79 (150)
T ss_dssp             TTSTTSBCCCCCEEBT---TCCEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS
T ss_pred             cccCCCcCCccEeECC---CCCEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC
Confidence            5679999999999887   99999999  999999999999 899999  999999999999999 88899999999996


Q ss_pred             -HHhHHhhccCccccCCCCccceeEEeeC---cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        125 -HFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                       ++..++|.+.   +    +++||++.|.   ++++++.||+.           ..|++|+||++|+|+...
T Consensus        80 ~~~~~~~~~~~---~----~~~~~~~~d~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           80 DKQQWKDAIKR---D----TLDWEQVCDFGGLNSEVAKQYSIY-----------KIPANILLSSDGKILAKN  133 (150)
T ss_dssp             CHHHHHHHHHH---T----TCCSEEECCSCGGGCHHHHHTTCC-----------SSSEEEEECTTSBEEEES
T ss_pred             CHHHHHHHHHH---h----CCCceEEEcCcccchHHHHHcCCC-----------ccCeEEEECCCCEEEEcc
Confidence             4667777764   3    8899999998   57999999982           235789999999998654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.89  E-value=1.6e-22  Score=169.99  Aligned_cols=122  Identities=17%  Similarity=0.224  Sum_probs=112.2

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC--HHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~--~~~~  318 (384)
                      +.+|+.+|+|+++   |.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|+.|.  ++..
T Consensus         2 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~   77 (154)
T 3kcm_A            2 SLEENPAPDFTLN---TLNGEVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAV   77 (154)
T ss_dssp             -CTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHH
T ss_pred             CCCCCCCCCeEEE---cCCCCEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHH
Confidence            3689999999998   5599999999999999999999 99999999999999999999998899999999986  6778


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+.+       +++|+++.|.++.+.+.||+      ..+|++||||++|+|++.+..
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  125 (154)
T 3kcm_A           78 EEFFRKT-------GFTLPVLLDADKRVGKLYGT------TGVPETFVIDRHGVILKKVVG  125 (154)
T ss_dssp             HHHHHHH-------CCCCCEEECTTCHHHHHHTC------CSBCEEEEECTTSBEEEEEES
T ss_pred             HHHHHHc-------CCCeeEEecCchHHHHHhCC------CCCCeEEEECCCCcEEEEEcC
Confidence            8888876       88999999999999999999      689999999999999997764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.89  E-value=5.6e-23  Score=176.53  Aligned_cols=137  Identities=12%  Similarity=0.137  Sum_probs=113.0

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCC-CchHHHHHHHHhHHHHHhCC--cEEEEEeCC--
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQIN--TEVVAASVD--  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp-~C~~~~~~l~~~~~~~~~~~--v~vi~Vs~d--  123 (384)
                      ..+.+|+++|+|++.+.   +|++++|++++||++||+|| ++||| +|+.+++.|.++++++++.+  +++|+||.|  
T Consensus         5 ~~l~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~   80 (174)
T 1xzo_A            5 IKDPLNYEVEPFTFQNQ---DGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPE   80 (174)
T ss_dssp             CCSCCCEECCCCEEECT---TSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred             CcCccccccCCcEEEcC---CCCEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCC
Confidence            35679999999999877   99999999999999999999 99999 99999999999999999876  999999997  


Q ss_pred             --CHHhHHhhccCccccCCCCccce---eEEeeCcchhHHhhcC-----cccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        124 --SHFTHLAWVNTPRKEGGLGKLKI---PLLSDLTHKISLDYGV-----YLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~---p~l~D~~~~~~~~ygv-----~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                        +++.+++|.+.+       +++|   +++.|.++++++.|++     .+.......++...+++||||++|+|+....
T Consensus        81 ~d~~~~~~~~~~~~-------~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~  153 (174)
T 1xzo_A           81 NDKPKQLKKFAANY-------PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN  153 (174)
T ss_dssp             TCCHHHHHHHHTTS-------CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE
T ss_pred             CCCHHHHHHHHHHc-------CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEc
Confidence              467788888754       6677   9999988888887765     1211111234455678999999999998776


Q ss_pred             eee
Q psy17178        194 GAL  196 (384)
Q Consensus       194 g~~  196 (384)
                      |..
T Consensus       154 g~~  156 (174)
T 1xzo_A          154 GVE  156 (174)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.89  E-value=4e-23  Score=174.84  Aligned_cols=121  Identities=12%  Similarity=0.040  Sum_probs=110.3

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHh-HHHHHHHHHHHHhCCcEEEEEeC-------CC
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASV-------DS  314 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~v~vv~Is~-------d~  314 (384)
                      .|.++|+|++.++  .+|+.+++++++||++||+|| ++||++|..+ +|.|++++++|+++++.+++|+.       |+
T Consensus         5 ~g~~~p~~~~~~~--~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   81 (160)
T 3lor_A            5 DNAPLLELDVQEW--VNHEGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMT   81 (160)
T ss_dssp             TTCCBCCCCEEEE--SSSCCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCcccccc--cCCCccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCC
Confidence            5789999999851  388999999999999999999 8999999996 99999999999988999999997       67


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCchH------HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK------ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++..++|++++       +++||++.|.++.      +++.||+      ...|++||||++|+|++.+..
T Consensus        82 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  139 (160)
T 3lor_A           82 PEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKYRL------EGTPSIILADRKGRIRQVQFG  139 (160)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHTTC------CSSSEEEEECTTSBEEEEEES
T ss_pred             HHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhccc------CccceEEEECCCCcEEEEecC
Confidence            88899998876       8899999999987      9999999      689999999999999997764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.89  E-value=4.7e-23  Score=173.62  Aligned_cols=122  Identities=14%  Similarity=0.081  Sum_probs=105.4

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH-HhHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH-FTHL  129 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~-~~~~  129 (384)
                      ...|+++|+|++.+.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|+++++|+.|+. +..+
T Consensus         9 ~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~   84 (152)
T 2lrt_A            9 KIKEASIIDIQLKDL---KGNTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWK   84 (152)
T ss_dssp             SSCTTCSCCCCEEBT---TSCEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHH
T ss_pred             hccCCCCCCeEEEcC---CCCEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHH
Confidence            358999999999877   99999999999999999999 799999999999999999999988999999999874 3344


Q ss_pred             hhccCccccCCCCccceeEEeeCcch---hHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHK---ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~---~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++.+         .++||++.|.++.   +++.||+.           ..|++||||++|+|+....|..
T Consensus        85 ~~~~---------~~~~~~~~d~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~~  134 (152)
T 2lrt_A           85 TSAD---------NLPWVCVRDANGAYSSYISLYNVT-----------NLPSVFLVNRNNELSARGENIK  134 (152)
T ss_dssp             HHHT---------TCSSEEEECSSGGGCHHHHHHTCC-----------SCSEEEEEETTTEEEEETTTCS
T ss_pred             HHHh---------CCCceEEECCCCcchHHHHHcCcc-----------cCceEEEECCCCeEEEecCCHH
Confidence            4543         4689999999986   99999982           2457899999999998776654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.88  E-value=6e-23  Score=172.61  Aligned_cols=121  Identities=15%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~  128 (384)
                      .+.+|+++|+|++.+.   +|+++++++++||++||+|| ++|||+|+.++|.|++++++++++++++++|+.|. .+..
T Consensus         2 ~l~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~   77 (152)
T 2lrn_A            2 SLATGSVAPAITGIDL---KGNSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDW   77 (152)
T ss_dssp             CSCTTEECCCCEEECS---SSCEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHH
T ss_pred             CccCCCcCCCceeEcC---CCCEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHH
Confidence            4679999999999877   99999999999999999999 99999999999999999999998899999999985 5666


Q ss_pred             HhhccCccccCCCCccceeEEeeC---cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      ++|.+.   +    +++||++.|.   ..++++.||+.           ..|++++||++|+|+...
T Consensus        78 ~~~~~~---~----~~~~~~~~d~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A           78 KKAIEE---D----KSYWNQVLLQKDDVKDVLESYCIV-----------GFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             HHHHHH---H----TCCSEEEEECHHHHHHHHHHTTCC-----------SSCEEEEECTTSEEEEEC
T ss_pred             HHHHHH---h----CCCCeEEecccchhHHHHHHhCCC-----------cCCeEEEECCCCeEEEee
Confidence            666663   3    7899999999   68899999982           245789999999997543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.88  E-value=1.3e-22  Score=169.05  Aligned_cols=121  Identities=19%  Similarity=0.166  Sum_probs=111.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~  319 (384)
                      ..+|+.+|+|++.   |.+|+.+++++++||++||+|| ++||++|..++|.|++++++++++++.+++|+.| +++..+
T Consensus         5 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~   80 (148)
T 3hcz_A            5 LLLGKKAPNLYMT---DTTGTYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWL   80 (148)
T ss_dssp             CCTTSBCCCCCCB---CTTSCBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHH
T ss_pred             cCCCCcCCceEEe---cCCCCEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHH
Confidence            4689999999998   5599999999999999999999 9999999999999999999999889999999998 567888


Q ss_pred             HHhcCccccCCCCCcc-eeEEecCchH--HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        320 AWVNTPRKEGGLGKLK-IPLLSDLTHK--ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~D~~~~--~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|.+++       +++ |+++.|.++.  +.+.||+      ..+|+++|||++|+|++.+.
T Consensus        81 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~i------~~~P~~~lid~~G~i~~~~~  129 (148)
T 3hcz_A           81 KFIRSK-------KIGGWLNVRDSKNHTDFKITYDI------YATPVLYVLDKNKVIIAKRI  129 (148)
T ss_dssp             HHHHHH-------TCTTSEEEECTTCCCCHHHHHCC------CSSCEEEEECTTCBEEEESC
T ss_pred             HHHHHc-------CCCCceEEeccccchhHHHhcCc------CCCCEEEEECCCCcEEEecC
Confidence            888876       677 9999999988  9999999      68999999999999998664

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.88  E-value=4.9e-22  Score=166.65  Aligned_cols=121  Identities=16%  Similarity=0.138  Sum_probs=111.8

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~  319 (384)
                      ..+|+.+|+|+++   | +|+.+++++++||++||+|| ++||+.|..+++.|++++++++++++.+++|+.| +++..+
T Consensus         3 l~~G~~~P~f~l~---~-~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~   77 (152)
T 3gl3_A            3 LDKGDKAPDFALP---G-KTGVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAM   77 (152)
T ss_dssp             CCTTSBCCCCEEE---B-SSSEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHH
T ss_pred             CCCCCcCCceEee---C-CCCeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHH
Confidence            4689999999998   7 89999999999999999999 9999999999999999999999999999999998 567778


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.+++       +++|+++.|.++.+.+.||+      ..+|++||||++|+|++.+..
T Consensus        78 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  124 (152)
T 3gl3_A           78 KFLAQV-------PAEFTVAFDPKGQTPRLYGV------KGMPTSFLIDRNGKVLLQHVG  124 (152)
T ss_dssp             HHHHHS-------CCCSEEEECTTCHHHHHTTC------CSSSEEEEECTTSBEEEEEES
T ss_pred             HHHHHc-------CCCCceeECCcchhHHHcCC------CCCCeEEEECCCCCEEEEEcc
Confidence            888876       88999999999999999999      689999999999999998774

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.88  E-value=1.5e-22  Score=171.42  Aligned_cols=122  Identities=18%  Similarity=0.235  Sum_probs=110.1

Q ss_pred             cCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       239 ~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+.+|+.+|+|++.   |.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|+.|+  ..
T Consensus        13 ~~~~~G~~~p~f~l~---~~~g~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~   86 (158)
T 3hdc_A           13 PLVRTGALAPNFKLP---TLSGENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--RF   86 (158)
T ss_dssp             CCCCTTSBCCCCEEE---CTTSCEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--SC
T ss_pred             cccCCCCcCCCceeE---cCCCCEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--HH
Confidence            345689999999998   5599999999999999999999 99999999999999999999988899999999987  45


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+..       +++|+++.|.++.+.+.||+      ..+|++||||++|+|++.+..
T Consensus        87 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~G  134 (158)
T 3hdc_A           87 PEKYRRA-------PVSFNFLSDATGQVQQRYGA------NRLPDTFIVDRKGIIRQRVTG  134 (158)
T ss_dssp             CGGGGGC-------CCSCEEEECTTSHHHHHTTC------CSSSEEEEECTTSBEEEEEES
T ss_pred             HHHHHHc-------CCCceEEECchHHHHHHhCC------CCcceEEEEcCCCCEEEEEeC
Confidence            5666654       78999999999999999999      689999999999999997764

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.88  E-value=2.9e-22  Score=174.60  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=109.7

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-------
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-------  312 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-------  312 (384)
                      ...+|+.+|+|+++   |.+|+.+++++++||++||+|| ++||++|..+++.|++++++++++ +.+++|+.       
T Consensus         6 ~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~   80 (188)
T 2cvb_A            6 ELPLESPLIDAELP---DPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYP   80 (188)
T ss_dssp             CCCTTCBCCCCEEE---CTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCG
T ss_pred             cCCCCCCCCCceee---cCCCCEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCcccccc
Confidence            34689999999998   5599999999999999999999 999999999999999999999887 99999998       


Q ss_pred             -CCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        313 -DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       313 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                       |+.+.+++|++++       +++|+++.|.++.+++.||+      ...|++||||++|+|++.
T Consensus        81 ~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           81 EDAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRA------LRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             GGSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTC------CEESEEEEECTTCBEEEE
T ss_pred             ccCHHHHHHHHHHh-------CCCceEEECCcchHHHHcCC------CCCCeEEEECCCCcEEEE
Confidence             5677888888876       78999999999999999999      688999999999999986

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.88  E-value=3.7e-22  Score=173.18  Aligned_cols=125  Identities=15%  Similarity=0.116  Sum_probs=111.7

Q ss_pred             CCCCCCCCCceeeeEEcC--cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCc------EEEEEeC
Q psy17178        241 PFVSKPAPFWQGTAVVDG--QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT------EVVAASV  312 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~--~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v------~vv~Is~  312 (384)
                      +..|+.+|+|+++   |.  +|+++++++++||++||+|| ++||++|+.++|.|++++++|+++++      .|++|+.
T Consensus        31 ~~~g~~~p~f~l~---~~~~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~  106 (183)
T 3lwa_A           31 EADRQQLPDIGGD---SLMEEGTQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV  106 (183)
T ss_dssp             GGGCCCCCCCEEE---BSSSTTCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEEC
T ss_pred             cccCCCCCceecc---ccccCCcEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC
Confidence            4578999999998   66  89999999999999999999 99999999999999999999999989      9999999


Q ss_pred             CC--HHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        313 DS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       313 d~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |+  ++..++|++++       +++|+++.|.++.+.+.|+.+..   ..+|++||||++|+|++.+..
T Consensus       107 d~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g  165 (183)
T 3lwa_A          107 RDYSRDIAQDFVTDN-------GLDYPSIYDPPFMTAASLGGVPA---SVIPTTIVLDKQHRPAAVFLR  165 (183)
T ss_dssp             SCCCHHHHHHHHHHT-------TCCSCEEECTTCGGGGGTTTCCT---TCCSEEEEECTTSCEEEEECS
T ss_pred             CCCCHHHHHHHHHHc-------CCCccEEECCcchHHHHhccCCC---CCCCeEEEECCCCcEEEEEcC
Confidence            87  78888998876       89999999999999999974221   578999999999999997764

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.88  E-value=5.3e-23  Score=178.72  Aligned_cols=138  Identities=9%  Similarity=0.003  Sum_probs=108.5

Q ss_pred             ccccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC---
Q psy17178         47 TFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD---  123 (384)
Q Consensus        47 ~~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d---  123 (384)
                      ...++++|+++|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++++++++|+.|   
T Consensus        17 ~~~~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~   92 (183)
T 2obi_A           17 SRDDWRCARSMHEFSAKDI---DGHMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFG   92 (183)
T ss_dssp             --CCGGGCCSGGGCEEEBT---TSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCST
T ss_pred             cccCCcccCcccceEEEcC---CCCEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCC
Confidence            3456789999999999877   99999999999999999999 9999999999999999999999989999999986   


Q ss_pred             -----CHHhHHhhccCccccCCCCccceeEEe--eCcchhHH-hhcCcccCC---CCccc--ceeEEEEEEEecCCCccc
Q psy17178        124 -----SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKISL-DYGVYLSDQ---GPVRG--SLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       124 -----~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~~~~-~ygv~~~~~---g~~~g--~~~~~~~~vid~~G~v~~  190 (384)
                           +++..++|.+.+       +++||++.  |.++..+. .|+.+....   |. .+  +...|++||||++|+|+.
T Consensus        93 ~~e~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~-~~~~i~~~P~~~lid~~G~i~~  164 (183)
T 2obi_A           93 KQEPGSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGI-LGNAIKWNFTKFLIDKNGCVVK  164 (183)
T ss_dssp             TCCCSCHHHHHHHHHTT-------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCS-SSSSCCSTTCEEEECTTSCEEE
T ss_pred             CCCCCCHHHHHHHHHHc-------CCCceEEeeeccCCcchhHHHHHhhccCCCCCc-ccccccccceEEEECCCCCEEE
Confidence                 467778887643       78999997  77766543 454322111   10 11  122367899999999998


Q ss_pred             ccceee
Q psy17178        191 YAGGAL  196 (384)
Q Consensus       191 ~~~g~~  196 (384)
                      ...|..
T Consensus       165 ~~~g~~  170 (183)
T 2obi_A          165 RYGPME  170 (183)
T ss_dssp             EECTTS
T ss_pred             EeCCCC
Confidence            776654

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.88  E-value=2.8e-22  Score=174.33  Aligned_cols=126  Identities=19%  Similarity=0.188  Sum_probs=111.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCH--HhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH--FTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~--~~~  318 (384)
                      ..+|..+|+|+++   |.+|+++++++++||++||+|| ++||++|+.+++.|+++++++++.++.|++|+.|..  +..
T Consensus        34 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~  109 (186)
T 1jfu_A           34 ASAPLKLPDLAFE---DADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKP  109 (186)
T ss_dssp             CCSCCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHH
T ss_pred             ccCCCcCCCcEeE---cCCCCEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHH
Confidence            4679999999998   5599999999999999999999 999999999999999999999888999999999853  677


Q ss_pred             HHHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+++       ++ .|+++.|+++.+.+.|++....  ...|++||||++|+|++++..
T Consensus       110 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g  162 (186)
T 1jfu_A          110 KTFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAG  162 (186)
T ss_dssp             HHHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEES
T ss_pred             HHHHHHc-------CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEec
Confidence            8888876       66 5899999999999999984211  368999999999999998763

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.88  E-value=4.3e-22  Score=167.02  Aligned_cols=120  Identities=22%  Similarity=0.266  Sum_probs=110.4

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHHHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAW  321 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~~~  321 (384)
                      +|+.+|+|++.   |.+|+.+++++++||++||+|| ++||++|..++|.|++++++++++++.+++|+.| +++..++|
T Consensus         2 ~G~~~p~~~l~---~~~g~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~   77 (151)
T 2f9s_A            2 EGSDAPNFVLE---DTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNF   77 (151)
T ss_dssp             CCEECCCCEEE---CTTCCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHH
T ss_pred             CCCcCCcceeE---cCCCCEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH
Confidence            68899999998   5599999999999999999999 9999999999999999999999889999999986 56788888


Q ss_pred             hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++.+       +++|+++.|.++.+.+.||+      ..+|++||||++|+|++.+..
T Consensus        78 ~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~G  122 (151)
T 2f9s_A           78 MKSY-------GVNFPVVLDTDRQVLDAYDV------SPLPTTFLINPEGKVVKVVTG  122 (151)
T ss_dssp             HHHH-------TCCSCEEEETTSHHHHHTTC------CSSCEEEEECTTSEEEEEEES
T ss_pred             HHHc-------CCCceEEECCchHHHHhcCC------CCCCeEEEECCCCcEEEEEeC
Confidence            8876       78999999999999999999      689999999999999997763

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.88  E-value=8.3e-23  Score=177.87  Aligned_cols=137  Identities=10%  Similarity=0.012  Sum_probs=107.3

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-----
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-----  123 (384)
                      ..+.+|+++|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|+++++|+.|     
T Consensus        21 ~~~~~g~~~p~f~l~~~---~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~   96 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDI---DGHMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ   96 (185)
T ss_dssp             GGGGGCCCGGGCEEEBT---TSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTC
T ss_pred             hhccCCCCcCCceeEcC---CCCEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCC
Confidence            45679999999999877   99999999999999999999 9999999999999999999999999999999986     


Q ss_pred             ---CHHhHHhhccCccccCCCCccceeEEe--eCcchhHH-hhcCcccCC---CCccc--ceeEEEEEEEecCCCccccc
Q psy17178        124 ---SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKISL-DYGVYLSDQ---GPVRG--SLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~~~~-~ygv~~~~~---g~~~g--~~~~~~~~vid~~G~v~~~~  192 (384)
                         +++..++|.+.   +    +++||++.  |.+++.+. .|+.+....   |. .+  +...|++||||++|+|+...
T Consensus        97 ~~~~~~~~~~~~~~---~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~-~~~~i~~~P~~~lid~~G~i~~~~  168 (185)
T 2gs3_A           97 EPGSNEEIKEFAAG---Y----NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGI-LGNAIKWNFTKFLIDKNGCVVKRY  168 (185)
T ss_dssp             CCSCHHHHHHHHHH---T----TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCS-SSSSCCSSCCEEEECTTSCEEEEE
T ss_pred             CCCCHHHHHHHHHH---c----CCCCeeeeeeccCChhhhHHHHHHHhhcccccc-cCCcccccceEEEECCCCCEEEee
Confidence               35667777764   3    78999997  55665443 454322111   10 11  12246789999999999887


Q ss_pred             ceeee
Q psy17178        193 GGALY  197 (384)
Q Consensus       193 ~g~~~  197 (384)
                      .|...
T Consensus       169 ~g~~~  173 (185)
T 2gs3_A          169 GPMEE  173 (185)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence            77543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.87  E-value=4.7e-23  Score=174.42  Aligned_cols=123  Identities=12%  Similarity=0.143  Sum_probs=108.6

Q ss_pred             cCCCCCCccEEEe-eecCccceEEccccCCCeEEEEEeeCCCCCCchHH-HHHHHHhHHHHHhCCcEEEEEeC-------
Q psy17178         52 NLSKPAPFWQGTA-VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASV-------  122 (384)
Q Consensus        52 ~~G~~aP~f~l~~-~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~v~vi~Vs~-------  122 (384)
                      ..|.++|+|++++ .   +|++++|++++||++||+|| ++|||+|..+ +|.|++++++|+++|+.+++|+.       
T Consensus         4 ~~g~~~p~~~~~~~~---~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~   79 (160)
T 3lor_A            4 LDNAPLLELDVQEWV---NHEGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDV   79 (160)
T ss_dssp             CTTCCBCCCCEEEES---SSCCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGG
T ss_pred             cCCCcCCCccccccc---CCCccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecccccccc
Confidence            3789999999987 5   78999999999999999999 8899999997 99999999999988999999997       


Q ss_pred             CCHHhHHhhccCccccCCCCccceeEEeeCcch------hHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK------ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~------~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |+.+..++|.+..       +++||++.|..+.      +++.||+        .+   .|++||||++|+|+....|..
T Consensus        80 ~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~v--------~~---~P~~~lid~~G~i~~~~~g~~  141 (160)
T 3lor_A           80 MTPEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKYRL--------EG---TPSIILADRKGRIRQVQFGQV  141 (160)
T ss_dssp             SCHHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHTTC--------CS---SSEEEEECTTSBEEEEEESCC
T ss_pred             CCHHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhccc--------Cc---cceEEEECCCCcEEEEecCcC
Confidence            5678888888753       7899999999988      9999998        22   356799999999998777765

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.87  E-value=4.9e-23  Score=174.04  Aligned_cols=124  Identities=16%  Similarity=0.204  Sum_probs=107.0

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHH-HHHHHHhHHHHHhCCcEEEEEeC-------CC
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASV-------DS  124 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~v~vi~Vs~-------d~  124 (384)
                      .|+++|+|+++++.+ +|++++|++++||++||+|| ++|||+|+.+ +|.|++++++|++.++.+++|+.       |+
T Consensus         2 ~g~~aP~f~l~~~~~-~g~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            2 NAMKAPELQIQQWFN-SATDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CCEECCCCCEEEEES-CSSCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCceehhhhc-CCCccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC
Confidence            689999999987422 57899999999999999999 8999999997 99999999999988999999996       46


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcc-----hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTH-----KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~-----~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+..++|.+..       +++||++.|.++     ++++.||+        .+   .|++||||++|+|+....|..
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v--------~~---~P~~~lid~~G~i~~~~~g~~  138 (158)
T 3eyt_A           80 PISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQM--------RG---TPSLLLIDKAGDLRAHHFGDV  138 (158)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTC--------CS---SSEEEEECTTSEEEEEEESCC
T ss_pred             HHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCC--------CC---CCEEEEECCCCCEEEEEeCCC
Confidence            77788888743       889999999987     79999998        22   356899999999987776654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.87  E-value=2e-22  Score=169.34  Aligned_cols=124  Identities=19%  Similarity=0.257  Sum_probs=110.0

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--HHhH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTH  128 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--~~~~  128 (384)
                      +++|+++|+|++.+.   +|+.+++++++||++||+|| ++|||+|+.+++.|.++++++++.++.+++|+.|.  .+..
T Consensus         2 ~~~G~~~p~~~l~~~---~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~   77 (154)
T 3kcm_A            2 SLEENPAPDFTLNTL---NGEVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAV   77 (154)
T ss_dssp             -CTTSBCCCCEEECT---TSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHH
T ss_pred             CCCCCCCCCeEEEcC---CCCEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHH
Confidence            469999999999877   99999999999999999999 99999999999999999999998899999999987  6777


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|.+..       +++||++.|.++.+++.||+.           ..|++||||++|+|+....|..
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~~  127 (154)
T 3kcm_A           78 EEFFRKT-------GFTLPVLLDADKRVGKLYGTT-----------GVPETFVIDRHGVILKKVVGAM  127 (154)
T ss_dssp             HHHHHHH-------CCCCCEEECTTCHHHHHHTCC-----------SBCEEEEECTTSBEEEEEESCC
T ss_pred             HHHHHHc-------CCCeeEEecCchHHHHHhCCC-----------CCCeEEEECCCCcEEEEEcCCC
Confidence            7787743       789999999999999999982           2457899999999987666654

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.87  E-value=3.9e-22  Score=172.43  Aligned_cols=130  Identities=13%  Similarity=0.200  Sum_probs=113.0

Q ss_pred             CCCCCCCCceeeeEEcC---------cc----eeeeccc-cCCCeEEEEEEeCCCCcCch-HhHHHHHHHHHHH-HhCCc
Q psy17178        242 FVSKPAPFWQGTAVVDG---------QL----KEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEF-HQINT  305 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~---------~g----~~~~l~d-~~Gk~vvl~F~~a~~c~~C~-~~~~~l~~l~~~~-~~~~v  305 (384)
                      .+|+.+|+|++++. .+         +|    +.+++++ ++||++||+|||+.|||.|. .|++.+++.++++ ++.|+
T Consensus         2 ~vGd~aPdf~l~~~-~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~   80 (182)
T 1xiy_A            2 KENDLIPNVKVMID-VRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF   80 (182)
T ss_dssp             CTTCBCCCCEEEEE-HHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred             CCCCCCCCeEEEcc-cccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            57999999999853 12         56    7999999 69999999999999999999 9999999999999 99999


Q ss_pred             E-EEEEeCCCHHhHHHHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecCC--C---ceeeEEEEEeCCceEEEEEe
Q psy17178        306 E-VVAASVDSHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQ--G---HTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       306 ~-vv~Is~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~--~---~~~p~~~lId~~G~i~~~~~  378 (384)
                      . |++||.|++..+++|.+..       +. +|++++|++++++++||+.....  |   ...+.+|||| +|+|++++.
T Consensus        81 ~~V~gvS~D~~~~~~~~~~~~-------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v  152 (182)
T 1xiy_A           81 DDIYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQ  152 (182)
T ss_dssp             SEEEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred             cEEEEEeCCCHHHHHHHHHHc-------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEE
Confidence            5 9999999999999999876       56 69999999999999999975432  2   2578899999 999999987


Q ss_pred             cC
Q psy17178        379 RG  380 (384)
Q Consensus       379 ~~  380 (384)
                      ..
T Consensus       153 ~~  154 (182)
T 1xiy_A          153 EK  154 (182)
T ss_dssp             CS
T ss_pred             eC
Confidence            54

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.87  E-value=2.8e-21  Score=165.97  Aligned_cols=130  Identities=16%  Similarity=0.125  Sum_probs=103.1

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCc-CchHhHHHHHHHHHHHHhC--CcEEEEEeCC----C
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQI--NTEVVAASVD----S  314 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~-~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d----~  314 (384)
                      .+|.++|+|+|+   |++|+++++++++||++||+|| .+||| +|+.+++.|.++++.+++.  ++++|+||+|    +
T Consensus         7 P~~~~~PdF~L~---d~~G~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt   82 (170)
T 4hde_A            7 PLNWDLETFQFT---NQDGKPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK   82 (170)
T ss_dssp             CCCBCCCCCEEE---CTTSCEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred             CCCCcCCCcEEE---CCCCCEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc
Confidence            478999999998   7799999999999999999999 88886 8999999999999999764  4899999975    5


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCch-HH----HHHhCceecCC--C--ceeeEEEEEeCCceEEEEEec
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTH-KI----SLDYGVYLSDQ--G--HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~----~~~~gv~~~~~--~--~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++.+++|++.+...    ...|..+.+.+. .+    ...|+......  +  .|.|++||||++|+|+.+|..
T Consensus        83 p~~l~~y~~~~~~~----~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g  152 (170)
T 4hde_A           83 PENLKAFIQKFTED----TSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSG  152 (170)
T ss_dssp             HHHHHHHHTTTCSC----CTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEES
T ss_pred             HHHHHHHHHHcCCC----CCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECC
Confidence            78889998876333    456777776542 22    23455543221  1  467899999999999998864

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.87  E-value=1.1e-22  Score=173.82  Aligned_cols=136  Identities=7%  Similarity=-0.032  Sum_probs=103.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC------
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  123 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d------  123 (384)
                      .+++|+++|+|++++.   +|+++++++++||++||+|| ++|||+|+.++|.|++++++|+++|+++++|+.|      
T Consensus         4 ~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~   79 (169)
T 2v1m_A            4 SHKSWNSIYEFTVKDI---NGVDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQE   79 (169)
T ss_dssp             ---CCCSGGGCEEEBT---TSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             cccCCcccccceeecC---CCCCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCC
Confidence            3579999999999877   99999999999999999999 8999999999999999999999989999999986      


Q ss_pred             --CHHhHHhh-ccCccccCCCCccceeEEe--eCcchhHH-hhcCcccCCCCccc--ceeEEEEEEEecCCCccccccee
Q psy17178        124 --SHFTHLAW-VNTPRKEGGLGKLKIPLLS--DLTHKISL-DYGVYLSDQGPVRG--SLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       124 --~~~~~~~~-~~~~~~~~~~~~~~~p~l~--D~~~~~~~-~ygv~~~~~g~~~g--~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                        +++.+++| .+.   +    +++||++.  |.++..+. .|+..........+  +...|++||||++|+|+....|.
T Consensus        80 ~~~~~~~~~~~~~~---~----~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~  152 (169)
T 2v1m_A           80 PWAEAEIKKFVTEK---Y----GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPT  152 (169)
T ss_dssp             CSCHHHHHHHHHHH---H----CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTT
T ss_pred             CCCHHHHHHHHHHh---c----CCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCC
Confidence              35667777 353   3    78999996  77776543 34221111000011  12235789999999999877665


Q ss_pred             e
Q psy17178        196 L  196 (384)
Q Consensus       196 ~  196 (384)
                      .
T Consensus       153 ~  153 (169)
T 2v1m_A          153 T  153 (169)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.87  E-value=4.1e-22  Score=173.10  Aligned_cols=130  Identities=10%  Similarity=-0.019  Sum_probs=106.2

Q ss_pred             ccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC----
Q psy17178        238 RAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----  313 (384)
Q Consensus       238 ~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d----  313 (384)
                      ...+.+|+.+|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|+.|    
T Consensus        18 ~~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~   93 (183)
T 2obi_A           18 RDDWRCARSMHEFSAK---DIDGHMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGK   93 (183)
T ss_dssp             -CCGGGCCSGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTT
T ss_pred             ccCCcccCcccceEEE---cCCCCEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCC
Confidence            3445789999999998   5599999999999999999999 9999999999999999999999989999999975    


Q ss_pred             ----CHHhHHHHhcCccccCCCCCcceeEEe--cCchHHHH-Hh----------CceecCCCceeeEEEEEeCCceEEEE
Q psy17178        314 ----SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKISL-DY----------GVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       314 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~-~~----------gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                          +++.+++|++++       +++||++.  |.++.... .|          |+.... -.+.|++||||++|+|+++
T Consensus        94 ~e~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~-i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A           94 QEPGSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNA-IKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             CCCSCHHHHHHHHHTT-------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSS-CCSTTCEEEECTTSCEEEE
T ss_pred             CCCCCHHHHHHHHHHc-------CCCceEEeeeccCCcchhHHHHHhhccCCCCCccccc-ccccceEEEECCCCCEEEE
Confidence                567888888876       88999997  66654332 33          331100 0246899999999999998


Q ss_pred             Eec
Q psy17178        377 FER  379 (384)
Q Consensus       377 ~~~  379 (384)
                      +..
T Consensus       166 ~~g  168 (183)
T 2obi_A          166 YGP  168 (183)
T ss_dssp             ECT
T ss_pred             eCC
Confidence            763

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.87  E-value=5.1e-22  Score=165.38  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=109.7

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecc--ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHH-HhCCcEEEEEeCCC-HH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF-HQINTEVVAASVDS-HF  316 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~--d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~-~~~~v~vv~Is~d~-~~  316 (384)
                      ..+|+.+|+|++.   +.+|+.++++  +++||++||+|| ++||++|+.++|.|+++++++ +++++.+++|+.|. .+
T Consensus         5 ~~~g~~~p~~~l~---~~~g~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~   80 (148)
T 3fkf_A            5 VTVGKSAPYFSLP---NEKGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDRE   80 (148)
T ss_dssp             CCTTSBCCCCCEE---BTTSCEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHH
T ss_pred             ccCCCcCCCeEee---CCCCCEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHH
Confidence            4689999999998   4599999999  999999999999 999999999999999999999 87889999999985 55


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecC---chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ..+++.+.+       +++|+++.|.   +..+.+.||+      ..+|+++|||++|+|++.+.
T Consensus        81 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A           81 AWETAIKKD-------TLSWDQVCDFTGLSSETAKQYAI------LTLPTNILLSPTGKILARDI  132 (148)
T ss_dssp             HHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTC------CSSSEEEEECTTSBEEEESC
T ss_pred             HHHHHHHHc-------CCCceEEEccCCcchHHHHhcCC------CCcCEEEEECCCCeEEEecC
Confidence            777887765       8899999998   6799999999      68999999999999998664

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.87  E-value=3.6e-22  Score=170.46  Aligned_cols=127  Identities=8%  Similarity=-0.052  Sum_probs=102.9

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      +.+|+.+|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|+++++++++++++|++|+.|       
T Consensus         5 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~   80 (169)
T 2v1m_A            5 HKSWNSIYEFTVK---DINGVDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEP   80 (169)
T ss_dssp             --CCCSGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred             ccCCcccccceee---cCCCCCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCC
Confidence            3589999999998   5599999999999999999999 8999999999999999999999989999999986       


Q ss_pred             -CHHhHHHH-hcCccccCCCCCcceeEEe--cCchHHHH-Hh--------CceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        314 -SHFTHLAW-VNTPRKEGGLGKLKIPLLS--DLTHKISL-DY--------GVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       314 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~--D~~~~~~~-~~--------gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                       +++.+++| .+++       +++||++.  |.++.... .|        |+...+ -.+.|++||||++|+|++++..
T Consensus        81 ~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g  151 (169)
T 2v1m_A           81 WAEAEIKKFVTEKY-------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSP  151 (169)
T ss_dssp             SCHHHHHHHHHHHH-------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECT
T ss_pred             CCHHHHHHHHHHhc-------CCCCceEEEEeecCccccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCC
Confidence             35678888 4765       78999996  66655432 23        442110 0346899999999999998763

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.87  E-value=4.4e-22  Score=166.94  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=108.7

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~  128 (384)
                      ++++|+++|+|++.+    +|+++++++++||++||+|| ++|||+|+.+++.|.++++++++.|+.+++|+.|. .+..
T Consensus         2 ~l~~G~~~P~f~l~~----~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~   76 (152)
T 3gl3_A            2 SLDKGDKAPDFALPG----KTGVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDA   76 (152)
T ss_dssp             CCCTTSBCCCCEEEB----SSSEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHH
T ss_pred             CCCCCCcCCceEeeC----CCCeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHH
Confidence            478999999999854    78899999999999999999 99999999999999999999999999999999985 6667


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|.+..       +++||++.|.++++++.||+.           ..|++|+||++|+|+....|..
T Consensus        77 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~~  126 (152)
T 3gl3_A           77 MKFLAQV-------PAEFTVAFDPKGQTPRLYGVK-----------GMPTSFLIDRNGKVLLQHVGFR  126 (152)
T ss_dssp             HHHHHHS-------CCCSEEEECTTCHHHHHTTCC-----------SSSEEEEECTTSBEEEEEESCC
T ss_pred             HHHHHHc-------CCCCceeECCcchhHHHcCCC-----------CCCeEEEECCCCCEEEEEccCC
Confidence            7777643       789999999999999999992           2357899999999987666643

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.87  E-value=2.1e-22  Score=170.51  Aligned_cols=125  Identities=17%  Similarity=0.248  Sum_probs=110.6

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ...+.+|+++|+|++.+.   +|+.+++++++||++||+|| ++|||+|+.+++.|+++++++++.++.+++|+.|+  .
T Consensus        12 ~~~~~~G~~~p~f~l~~~---~g~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~   85 (158)
T 3hdc_A           12 APLVRTGALAPNFKLPTL---SGENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--R   85 (158)
T ss_dssp             SCCCCTTSBCCCCEEECT---TSCEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--S
T ss_pred             CcccCCCCcCCCceeEcC---CCCEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--H
Confidence            445779999999999877   99999999999999999999 99999999999999999999988899999999998  4


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .++|.+.   +    +++||++.|.++++++.||+.           ..|++||||++|+|+....|..
T Consensus        86 ~~~~~~~---~----~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~G~~  136 (158)
T 3hdc_A           86 FPEKYRR---A----PVSFNFLSDATGQVQQRYGAN-----------RLPDTFIVDRKGIIRQRVTGGI  136 (158)
T ss_dssp             CCGGGGG---C----CCSCEEEECTTSHHHHHTTCC-----------SSSEEEEECTTSBEEEEEESCC
T ss_pred             HHHHHHH---c----CCCceEEECchHHHHHHhCCC-----------CcceEEEEcCCCCEEEEEeCCC
Confidence            5556653   3    789999999999999999992           2357899999999998887775

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=173.51  Aligned_cols=127  Identities=9%  Similarity=-0.016  Sum_probs=103.2

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      +.+|+.+|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|+++++++++++++|++|+.|       
T Consensus        23 ~~~g~~~p~f~l~---~~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~   98 (185)
T 2gs3_A           23 MRCARSMHEFSAK---DIDGHMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP   98 (185)
T ss_dssp             GGGCCCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCC
T ss_pred             ccCCCCcCCceeE---cCCCCEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCC
Confidence            4589999999998   5599999999999999999999 9999999999999999999999999999999976       


Q ss_pred             -CHHhHHHHhcCccccCCCCCcceeEEe--cCchHHHH-Hh----------CceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        314 -SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKISL-DY----------GVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~-~~----------gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                       +++.+++|++++       +++||++.  |.++.... .|          |+... .-...|++||||++|+|++++..
T Consensus        99 ~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g  170 (185)
T 2gs3_A           99 GSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGP  170 (185)
T ss_dssp             SCHHHHHHHHHHT-------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTTSCEEEEECT
T ss_pred             CCHHHHHHHHHHc-------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCC-cccccceEEEECCCCCEEEeeCC
Confidence             356788888766       88999997  44443322 33          32110 00236899999999999998763

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.87  E-value=1.1e-22  Score=169.42  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=108.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-CHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-~~~~~  128 (384)
                      .+.+|+++|+|++.+.   +|+++++++++||++||+|| ++|||+|+.++|.|+++++++++.++.+++|+.| +.+..
T Consensus         4 ~~~~G~~~p~~~l~~~---~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~   79 (148)
T 3hcz_A            4 PLLLGKKAPNLYMTDT---TGTYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEW   79 (148)
T ss_dssp             CCCTTSBCCCCCCBCT---TSCBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHH
T ss_pred             ccCCCCcCCceEEecC---CCCEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHH
Confidence            4679999999999777   99999999999999999999 9999999999999999999999889999999998 46677


Q ss_pred             HhhccCccccCCCCccc-eeEEeeCcch--hHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        129 LAWVNTPRKEGGLGKLK-IPLLSDLTHK--ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-~p~l~D~~~~--~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++|.+..       +++ ||++.|.++.  +++.||+.           ..|+++++|++|+|+....|
T Consensus        80 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~i~-----------~~P~~~lid~~G~i~~~~~g  130 (148)
T 3hcz_A           80 LKFIRSK-------KIGGWLNVRDSKNHTDFKITYDIY-----------ATPVLYVLDKNKVIIAKRIG  130 (148)
T ss_dssp             HHHHHHH-------TCTTSEEEECTTCCCCHHHHHCCC-----------SSCEEEEECTTCBEEEESCC
T ss_pred             HHHHHHc-------CCCCceEEeccccchhHHHhcCcC-----------CCCEEEEECCCCcEEEecCC
Confidence            7787743       677 9999999988  99999982           24578999999999866544

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.87  E-value=9.5e-22  Score=165.06  Aligned_cols=122  Identities=19%  Similarity=0.211  Sum_probs=110.8

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC--CCHHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DSHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--d~~~~~  318 (384)
                      +.+|+.+|+|+++   |.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|+.  |+.+..
T Consensus         2 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~   77 (153)
T 2l5o_A            2 SLDSKTAPAFSLP---DLHGKTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV   77 (153)
T ss_dssp             --CCTTCCSCEEE---CTTSCEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHH
T ss_pred             CCCCCCCCCcEee---cCCCCCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHH
Confidence            3579999999998   5599999999999999999999 999999999999999999999988999999994  678888


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|++++       +++|+++.|.+..+.+.||+      ..+|+++|||++|+|++.+..
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~i------~~~P~~~lid~~G~i~~~~~g  125 (153)
T 2l5o_A           78 RQYVKDY-------GLPFTVMYDADKAVGQAFGT------QVYPTSVLIGKKGEILKTYVG  125 (153)
T ss_dssp             HHHHHHT-------TCCSEEEECSSCHHHHHHTC------CSSSEEEEECSSSCCCEEEES
T ss_pred             HHHHHHc-------CCCceEEcCchHHHHHHcCC------CccCeEEEECCCCcEEEEEcC
Confidence            9998876       88999999999999999999      678999999999999987763

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.87  E-value=2.4e-22  Score=172.58  Aligned_cols=134  Identities=11%  Similarity=0.073  Sum_probs=105.3

Q ss_pred             cCCCCCC-ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCC-CchHHHHHHHHhHHHHHh--CCcEEEEEeCC---C
Q psy17178         52 NLSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQ--INTEVVAASVD---S  124 (384)
Q Consensus        52 ~~G~~aP-~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp-~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~d---~  124 (384)
                      .+|+++| +|++++.   +|++++|++++||++||+|| ++||| +|+.+++.|+++++++++  .++++++||.|   +
T Consensus         2 ~~G~~~P~~f~l~d~---~G~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~   77 (170)
T 3me7_A            2 SLGTYVPGDITLVDS---YGNEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDT   77 (170)
T ss_dssp             CTTCBCCTTCEEEET---TCCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCC
T ss_pred             CCCCcCCCCeEEEcC---CcCEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCC
Confidence            5899999 9999877   99999999999999999999 88997 699999999999999975  56999999987   4


Q ss_pred             HHhHHhhccCccccCCCCccceeEEe--e--CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLS--D--LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~--D--~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++.+++|.+.+    +.....|+++.  |  ...+++++||+.....  ..++..++++||||++|+|+.+..|.
T Consensus        78 ~~~~~~~~~~~----~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~lID~~G~i~~~~~g~  146 (170)
T 3me7_A           78 LEDIKRFQKEY----GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTA--GNDFIHPNVVVVLSPELQIKDYIYGV  146 (170)
T ss_dssp             HHHHHHHHHHT----TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEE--TTEEECCCEEEEECTTSBEEEEEESS
T ss_pred             HHHHHHHHHHc----CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecC--CCccccCceEEEECCCCeEEEEEeCC
Confidence            66777777754    11123455543  3  3378999999854431  13445667899999999999776554

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.87  E-value=6.3e-22  Score=173.43  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=111.4

Q ss_pred             CCCCCCCCCCceee-eEEcCcceeeeccccCCCe-EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-----
Q psy17178        240 IPFVSKPAPFWQGT-AVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-----  312 (384)
Q Consensus       240 ~~~~g~~~P~f~l~-~l~d~~g~~~~l~d~~Gk~-vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----  312 (384)
                      ...+|+.+|+|+++ ++   +|+.+++++++||+ +||+|| ++||++|+.++|.|++++++|+++++.+++|+.     
T Consensus        17 ~~~~g~~~p~f~l~~~~---~G~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~   92 (196)
T 2ywi_A           17 MFPLGKQAPPFALTNVI---DGNVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQ   92 (196)
T ss_dssp             CCCTTCBCCCCEEEETT---TCCEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTT
T ss_pred             CCCcCCcCCceeeeecC---CCCEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccc
Confidence            35689999999987 55   99999999999985 999999 999999999999999999999988999999998     


Q ss_pred             ---CCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        313 ---DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       313 ---d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                         |+++.+++|++++       +++|+++.|.++.+++.||+      ...|++||||++|+|++.+.
T Consensus        93 ~~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  148 (196)
T 2ywi_A           93 YPEDSPENMKKVAEEL-------GYPFPYLYDETQEVAKAYDA------ACTPDFYIFDRDLKCVYRGQ  148 (196)
T ss_dssp             CGGGSHHHHHHHHHHH-------TCCSCEEECSSCHHHHHHTC------CEESEEEEEETTCBEEEEEC
T ss_pred             ccccCHHHHHHHHHHc-------CCCceEEECCchHHHHHhCC------CCCCeEEEEcCCCeEEEccc
Confidence               5678888888876       88999999999999999999      68999999999999999753

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.87  E-value=1.4e-21  Score=165.89  Aligned_cols=123  Identities=17%  Similarity=0.196  Sum_probs=103.3

Q ss_pred             CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcC-chHhHHHHHHHHHHHHh----CCcEEEEEeCCC----HH
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ----INTEVVAASVDS----HF  316 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~-C~~~~~~l~~l~~~~~~----~~v~vv~Is~d~----~~  316 (384)
                      .+|+|+++   |.+|+++++++++||++||+|| ++||++ |+.++|.|+++++++++    .++++++||.|+    ++
T Consensus         2 ~ap~f~l~---~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~   77 (164)
T 2ggt_A            2 LGGPFSLT---THTGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE   77 (164)
T ss_dssp             CCCCCEEE---ETTSCEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH
T ss_pred             CCCCeEEE---eCCCCEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH
Confidence            57999998   5599999999999999999999 899998 99999999999999987    489999999875    67


Q ss_pred             hHHHHhcCccccCCCCCcceeEEe---cCchHHHHHhCceecCC-----C----ceeeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ-----G----HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~---D~~~~~~~~~gv~~~~~-----~----~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+++|++++       +.+|+++.   |..+.++++||+...+.     +    .+.+++||||++|+|++++..
T Consensus        78 ~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g  145 (164)
T 2ggt_A           78 AIANYVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ  145 (164)
T ss_dssp             HHHHHHHTT-------CSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEET
T ss_pred             HHHHHHHHc-------CCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCC
Confidence            888898876       78899985   44468999999843220     0    123389999999999998753

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.87  E-value=2e-22  Score=174.84  Aligned_cols=123  Identities=12%  Similarity=0.021  Sum_probs=99.9

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC------
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  313 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d------  313 (384)
                      ...+|+.+|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|+.|      
T Consensus        22 ~~~~g~~~p~f~l~---~~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e   97 (181)
T 2p31_A           22 SMQQEQDFYDFKAV---NIRGKLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQE   97 (181)
T ss_dssp             -----CCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             cCCcCCccCceEee---cCCCCEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCC
Confidence            35689999999998   5599999999999999999999 9999999999999999999999999999999986      


Q ss_pred             --CHHhHHHHhcC-ccccCCCCCcceeEEe--cCchHHHH---HhCceecCCCceee-------EEEEEeCCceEEEEEe
Q psy17178        314 --SHFTHLAWVNT-PRKEGGLGKLKIPLLS--DLTHKISL---DYGVYLSDQGHTLD-------KYCLECYKMVIVYWFE  378 (384)
Q Consensus       314 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~--D~~~~~~~---~~gv~~~~~~~~~p-------~~~lId~~G~i~~~~~  378 (384)
                        +++.+++|+++ +       +++||++.  |.++....   .|++      ...|       ++||||++|+|++++.
T Consensus        98 ~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~g~~~~~~~~~~~------~~~P~~~~~~~~~~lid~~G~i~~~~~  164 (181)
T 2p31_A           98 PDSNKEIESFARRTY-------SVSFPMFSKIAVTGTGAHPAFKYLA------QTSGKEPTWNFWKYLVAPDGKVVGAWD  164 (181)
T ss_dssp             CSCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTSCHHHHHHH------HHHSCCCCSTTCEEEECTTSCEEEEEC
T ss_pred             CCCHHHHHHHHHhhc-------CCCceeEeecccCCccchhhhhhhh------hcCCCccccceeEEEEcCCCCEEEEeC
Confidence              56788888876 5       78999996  44443322   3334      3456       8999999999999876


Q ss_pred             c
Q psy17178        379 R  379 (384)
Q Consensus       379 ~  379 (384)
                      .
T Consensus       165 g  165 (181)
T 2p31_A          165 P  165 (181)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.87  E-value=2.6e-22  Score=168.29  Aligned_cols=123  Identities=20%  Similarity=0.284  Sum_probs=107.8

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLA  130 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~  130 (384)
                      ++|+++|+|++.+.   +|+.+++++++||++||+|| ++|||+|+.++|.|.++++++++.++.+++|+.|. ++..++
T Consensus         1 ~~G~~~p~~~l~~~---~g~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~   76 (151)
T 2f9s_A            1 SEGSDAPNFVLEDT---NGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN   76 (151)
T ss_dssp             -CCEECCCCEEECT---TCCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHH
T ss_pred             CCCCcCCcceeEcC---CCCEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence            37999999999877   99999999999999999999 99999999999999999999998899999999865 677778


Q ss_pred             hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |.+..       +++||++.|.++++++.||+        .   ..|+++++|++|+|+....|..
T Consensus        77 ~~~~~-------~~~~~~~~d~~~~~~~~~~v--------~---~~P~~~lid~~G~i~~~~~G~~  124 (151)
T 2f9s_A           77 FMKSY-------GVNFPVVLDTDRQVLDAYDV--------S---PLPTTFLINPEGKVVKVVTGTM  124 (151)
T ss_dssp             HHHHH-------TCCSCEEEETTSHHHHHTTC--------C---SSCEEEEECTTSEEEEEEESCC
T ss_pred             HHHHc-------CCCceEEECCchHHHHhcCC--------C---CCCeEEEECCCCcEEEEEeCCC
Confidence            87743       78999999999999999998        2   2457899999999987655543

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.87  E-value=7.6e-23  Score=177.47  Aligned_cols=134  Identities=13%  Similarity=0.044  Sum_probs=99.0

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-----
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-----  123 (384)
                      ..+++|+++|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++++++++|+.|     
T Consensus        21 ~~~~~g~~~p~f~l~~~---~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~   96 (181)
T 2p31_A           21 QSMQQEQDFYDFKAVNI---RGKLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ   96 (181)
T ss_dssp             ------CCGGGCEEEBT---TSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTC
T ss_pred             CcCCcCCccCceEeecC---CCCEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCC
Confidence            45679999999999877   99999999999999999999 9999999999999999999999999999999986     


Q ss_pred             ---CHHhHHhhccCccccCCCCccceeEEe--eCcchhHH-h--hcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        124 ---SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKISL-D--YGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~~~~-~--ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                         +.+..++|.+.  ++    +++||++.  |.++..+. .  |++...+ +..+.   ..++||||++|+|+....|.
T Consensus        97 e~~~~~~~~~~~~~--~~----~~~~p~~~~~d~~g~~~~~~~~~~~~~~P-~~~~~---~~~~~lid~~G~i~~~~~g~  166 (181)
T 2p31_A           97 EPDSNKEIESFARR--TY----SVSFPMFSKIAVTGTGAHPAFKYLAQTSG-KEPTW---NFWKYLVAPDGKVVGAWDPT  166 (181)
T ss_dssp             CCSCHHHHHHHHHH--HH----CCCSCBBCCCCCSSTTSCHHHHHHHHHHS-CCCCS---TTCEEEECTTSCEEEEECTT
T ss_pred             CCCCHHHHHHHHHh--hc----CCCceeEeecccCCccchhhhhhhhhcCC-Ccccc---ceeEEEEcCCCCEEEEeCCC
Confidence               46677778764  03    78999996  44454333 2  3331111 00000   01678999999999876664


Q ss_pred             e
Q psy17178        196 L  196 (384)
Q Consensus       196 ~  196 (384)
                      .
T Consensus       167 ~  167 (181)
T 2p31_A          167 V  167 (181)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.87  E-value=1.2e-21  Score=162.51  Aligned_cols=122  Identities=13%  Similarity=0.151  Sum_probs=108.7

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC----CH
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----SH  315 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d----~~  315 (384)
                      .+.+|+.+|+|+++   |.+|+.+++++ +||++||+|| ++||++|+.+++.|+++++++++.++.+++|+.|    ++
T Consensus         8 ~~~~g~~~p~~~l~---~~~g~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~   82 (145)
T 3erw_A            8 EEKQPAVPAVFLMK---TIEGEDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQ   82 (145)
T ss_dssp             ----CCSCCEEEEE---CTTSCEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCH
T ss_pred             cccCCCcCCCceee---cCCCCEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCH
Confidence            34689999999998   55999999999 9999999999 9999999999999999999998788999999985    67


Q ss_pred             HhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        316 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +..++|.+.+       +++|+++.|.++.+.+.|++      ..+|+++|||++|+|++.+..
T Consensus        83 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  133 (145)
T 3erw_A           83 QVVEDFIKAN-------KLTFPIVLDSKGELMKEYHI------ITIPTSFLLNEKGEIEKTKIG  133 (145)
T ss_dssp             HHHHHHHHHT-------TCCSCEEECSSSHHHHHTTC------CEESEEEEECTTCCEEEEEES
T ss_pred             HHHHHHHHHc-------CCceeEEEcCchhHHHhcCc------CccCeEEEEcCCCcEEEEEcC
Confidence            7888888776       88999999999999999999      789999999999999997764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.86  E-value=7.7e-23  Score=178.41  Aligned_cols=138  Identities=9%  Similarity=0.002  Sum_probs=104.4

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-----
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-----  123 (384)
                      ..+..+.++|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|+++|+|+.|     
T Consensus        18 ~~~~~~~~~p~f~l~d~---~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~   93 (187)
T 3dwv_A           18 KKMSAASSIFDFEVLDA---DHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQ   93 (187)
T ss_dssp             --CTTCCSGGGSCCBBT---TSCBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSC
T ss_pred             hhhcCCCccCCeEEEcC---CCCEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCC
Confidence            45678899999999877   99999999999999999999 9999999999999999999999999999999987     


Q ss_pred             ---CHHhHHhhccCccccCCCCccceeEEe--eCcchhHH-hhcCcccCCCCcccceeEE---EEEEEecCCCcccccce
Q psy17178        124 ---SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKISL-DYGVYLSDQGPVRGSLLST---AIFVYALTSPVNGYAGG  194 (384)
Q Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~~~~-~ygv~~~~~g~~~g~~~~~---~~~vid~~G~v~~~~~g  194 (384)
                         +.+..++|.+.  ++    +++||++.  |.++..+. .|+......+...|+...|   ++||||++|+|+....|
T Consensus        94 e~~~~~~~~~~~~~--~~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g  167 (187)
T 3dwv_A           94 EPGNEEEIKEFVCT--KF----KAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSP  167 (187)
T ss_dssp             SSSBTTHHHHSCCB--CC----CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECT
T ss_pred             CCCCHHHHHHHHHh--cc----CCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECC
Confidence               35666677662  12    78999997  55554332 2321111111123334445   78999999999987666


Q ss_pred             ee
Q psy17178        195 AL  196 (384)
Q Consensus       195 ~~  196 (384)
                      ..
T Consensus       168 ~~  169 (187)
T 3dwv_A          168 GA  169 (187)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.86  E-value=4e-22  Score=173.73  Aligned_cols=123  Identities=15%  Similarity=0.150  Sum_probs=108.3

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC------
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------  122 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~------  122 (384)
                      ..+.+|+++|+|++.+.   +|++++|++++||++||+|| ++|||+|+.+++.|++++++|+++ +++++|+.      
T Consensus         5 ~~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~   79 (188)
T 2cvb_A            5 PELPLESPLIDAELPDP---RGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKY   79 (188)
T ss_dssp             CCCCTTCBCCCCEEECT---TSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTC
T ss_pred             CcCCCCCCCCCceeecC---CCCEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccc
Confidence            35679999999999877   99999999999999999999 999999999999999999999887 99999998      


Q ss_pred             --CCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        123 --DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       123 --d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                        |+.+..++|.+..       +++||++.|.++++++.||+           ...|++||||++|+|+..  |..
T Consensus        80 ~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~--g~~  135 (188)
T 2cvb_A           80 PEDAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRA-----------LRTPEVFLFDERRLLRYH--GRV  135 (188)
T ss_dssp             GGGSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTC-----------CEESEEEEECTTCBEEEE--ECS
T ss_pred             cccCHHHHHHHHHHh-------CCCceEEECCcchHHHHcCC-----------CCCCeEEEECCCCcEEEE--Eec
Confidence              4567777787743       78999999999999999998           235678999999999865  544

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.86  E-value=1.6e-21  Score=167.53  Aligned_cols=135  Identities=17%  Similarity=0.130  Sum_probs=104.0

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCC-CchHHHHHHHHhHHHHHhC--CcEEEEEeCCC----
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQI--NTEVVAASVDS----  124 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp-~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~----  124 (384)
                      .+|.++|+|+|.+.   +|++++|++++||++||+|| .+||| +|+.+++.|.++++.+++.  ++++|+||+|+    
T Consensus         7 P~~~~~PdF~L~d~---~G~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt   82 (170)
T 4hde_A            7 PLNWDLETFQFTNQ---DGKPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK   82 (170)
T ss_dssp             CCCBCCCCCEEECT---TSCEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred             CCCCcCCCcEEECC---CCCEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc
Confidence            47999999999766   99999999999999999999 88997 8999999999999999765  48899999874    


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcc-hhH----HhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTH-KIS----LDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~-~~~----~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++.+++|++.+.    .+...|.++.+... .+.    ..|++...... ...+.+++.+||||++|+|+.+..|.
T Consensus        83 p~~l~~y~~~~~----~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~~~liD~~G~i~~~~~g~  153 (170)
T 4hde_A           83 PENLKAFIQKFT----EDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPE-NGQVIHGTSFYLIDQNGKVMKKYSGI  153 (170)
T ss_dssp             HHHHHHHHTTTC----SCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCT-TSCCBCCCEEEEECTTSCEEEEEESS
T ss_pred             HHHHHHHHHHcC----CCCCCceecCcccHHHHHHHHHhcccccccCCC-CceEEeeeEEEEEcCCCeEEEEECCC
Confidence            677888888652    22456778876543 222    33555433311 24455678899999999999776554

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.86  E-value=1.5e-21  Score=173.25  Aligned_cols=126  Identities=10%  Similarity=-0.037  Sum_probs=99.3

Q ss_pred             CCCCCCCceeeeEEcCc-ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178        243 VSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  313 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~-g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------  313 (384)
                      .++.+|+|+++   |.+ |+++++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|+.|        
T Consensus        22 ~~~~~p~f~l~---~~~~G~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d   97 (208)
T 2f8a_A           22 SMQSVYAFSAR---PLAGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENA   97 (208)
T ss_dssp             CCCCGGGCEEC---BTTCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCS
T ss_pred             hcCccCceEee---eCCCCCCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCC
Confidence            56789999998   448 9999999999999999999 9999999999999999999999999999999986        


Q ss_pred             CHHhHHHHhc------CccccCCCCCcceeEEecCc--hH----HHH----HhCc--------e-------ec----CCC
Q psy17178        314 SHFTHLAWVN------TPRKEGGLGKLKIPLLSDLT--HK----ISL----DYGV--------Y-------LS----DQG  358 (384)
Q Consensus       314 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~D~~--~~----~~~----~~gv--------~-------~~----~~~  358 (384)
                      +++.+++|++      ++       +++||++.|.+  +.    +.+    .++.        +       ..    ..-
T Consensus        98 ~~~~i~~f~~~~~~~~~~-------~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  170 (208)
T 2f8a_A           98 KNEEILNSLKYVRPGGGF-------EPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV  170 (208)
T ss_dssp             CHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCC
T ss_pred             CHHHHHHHHHhccccccc-------ccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcc
Confidence            4577888887      44       78999996533  22    222    2210        0       00    001


Q ss_pred             ceeeEEEEEeCCceEEEEEec
Q psy17178        359 HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       359 ~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ...|++||||++|+|++++..
T Consensus       171 ~~~p~tflID~~G~i~~~~~g  191 (208)
T 2f8a_A          171 AWNFEKFLVGPDGVPLRRYSR  191 (208)
T ss_dssp             CSTTCEEEECTTSCEEEEECT
T ss_pred             ccCceEEEEcCCCcEEEEeCC
Confidence            245899999999999998763

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.86  E-value=2.7e-22  Score=174.98  Aligned_cols=125  Identities=13%  Similarity=0.069  Sum_probs=100.9

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      ...+.++|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|++|       
T Consensus        20 ~~~~~~~p~f~l~---d~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~   95 (187)
T 3dwv_A           20 MSAASSIFDFEVL---DADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEP   95 (187)
T ss_dssp             CTTCCSGGGSCCB---BTTSCBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSS
T ss_pred             hcCCCccCCeEEE---cCCCCEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCC
Confidence            3567899999998   5599999999999999999999 9999999999999999999999999999999986       


Q ss_pred             -CHHhHHHHhc-CccccCCCCCcceeEEe--cCchHHH-HHh--------CceecCCCceee---EEEEEeCCceEEEEE
Q psy17178        314 -SHFTHLAWVN-TPRKEGGLGKLKIPLLS--DLTHKIS-LDY--------GVYLSDQGHTLD---KYCLECYKMVIVYWF  377 (384)
Q Consensus       314 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~--D~~~~~~-~~~--------gv~~~~~~~~~p---~~~lId~~G~i~~~~  377 (384)
                       +++.+++|++ ++       +++||++.  |.++..+ ..|        +++..   ..+|   ++||||++|+|++.+
T Consensus        96 ~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~---~~iP~~~~~~liD~~G~i~~~~  165 (187)
T 3dwv_A           96 GNEEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTKPGILAT---KAIKWNFTSFLIDRDGVPVERF  165 (187)
T ss_dssp             SBTTHHHHSCCBCC-------CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSS---SSCCSTTCEEEECTTSCEEEEE
T ss_pred             CCHHHHHHHHHhcc-------CCCCceeeccccCCcchhHHHHHHHhhcCCccCC---CccccceeEEEECCCCCEEEEE
Confidence             4567777776 33       78899986  4444322 122        33211   2566   999999999999987


Q ss_pred             ec
Q psy17178        378 ER  379 (384)
Q Consensus       378 ~~  379 (384)
                      ..
T Consensus       166 ~g  167 (187)
T 3dwv_A          166 SP  167 (187)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.86  E-value=1.1e-21  Score=168.36  Aligned_cols=133  Identities=10%  Similarity=-0.008  Sum_probs=104.7

Q ss_pred             CCCCCCC-CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCc-CchHhHHHHHHHHHHHHh--CCcEEEEEeCC---C
Q psy17178        242 FVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQ--INTEVVAASVD---S  314 (384)
Q Consensus       242 ~~g~~~P-~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~-~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d---~  314 (384)
                      .+|+++| +|+++   |.+|+++++++++||++||+|| ++||| +|+.+++.|+++++++++  .++++|+||.|   +
T Consensus         2 ~~G~~~P~~f~l~---d~~G~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~   77 (170)
T 3me7_A            2 SLGTYVPGDITLV---DSYGNEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDT   77 (170)
T ss_dssp             CTTCBCCTTCEEE---ETTCCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCC
T ss_pred             CCCCcCCCCeEEE---cCCcCEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCC
Confidence            4789999 99998   5599999999999999999999 89997 699999999999999975  56999999986   5


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEe--c--CchHHHHHhCceecC--C-CceeeEEEEEeCCceEEEEEecCCC
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLS--D--LTHKISLDYGVYLSD--Q-GHTLDKYCLECYKMVIVYWFERGNC  382 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~--D--~~~~~~~~~gv~~~~--~-~~~~p~~~lId~~G~i~~~~~~~~~  382 (384)
                      ++.+++|++++...    ...|+++.  |  ...+++++||+....  . -.+.|++||||++|+|++++.....
T Consensus        78 ~~~~~~~~~~~~~~----~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~  148 (170)
T 3me7_A           78 LEDIKRFQKEYGID----GKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNY  148 (170)
T ss_dssp             HHHHHHHHHHTTCC----SSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSC
T ss_pred             HHHHHHHHHHcCCC----CCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCC
Confidence            77888888876211    23444432  3  237888998864321  1 1467899999999999998765433

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.86  E-value=4.1e-22  Score=174.62  Aligned_cols=121  Identities=15%  Similarity=0.124  Sum_probs=107.3

Q ss_pred             ccccCCCCCCccEEE-eeecCccceEEccccCCCe-EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC----
Q psy17178         49 YSKNLSKPAPFWQGT-AVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV----  122 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~-~~~~~~g~~~~l~~~~gk~-vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~----  122 (384)
                      ..+.+|+++|+|++. +.   +|++++|++++||+ +||+|| ++|||+|+.++|.|++++++|+++++++++|+.    
T Consensus        16 ~~~~~g~~~p~f~l~~~~---~G~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~   91 (196)
T 2ywi_A           16 NMFPLGKQAPPFALTNVI---DGNVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAE   91 (196)
T ss_dssp             CCCCTTCBCCCCEEEETT---TCCEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTT
T ss_pred             cCCCcCCcCCceeeeecC---CCCEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccc
Confidence            356799999999997 76   99999999999984 999999 999999999999999999999988999999999    


Q ss_pred             ----CCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        123 ----DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       123 ----d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                          |+++..++|.+..       +++||++.|.++++++.||+           ...|++||||++|+|+..
T Consensus        92 ~~~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~  146 (196)
T 2ywi_A           92 QYPEDSPENMKKVAEEL-------GYPFPYLYDETQEVAKAYDA-----------ACTPDFYIFDRDLKCVYR  146 (196)
T ss_dssp             TCGGGSHHHHHHHHHHH-------TCCSCEEECSSCHHHHHHTC-----------CEESEEEEEETTCBEEEE
T ss_pred             cccccCHHHHHHHHHHc-------CCCceEEECCchHHHHHhCC-----------CCCCeEEEEcCCCeEEEc
Confidence                4567777887743       78999999999999999998           345678999999999854

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.86  E-value=9.6e-22  Score=170.53  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=111.0

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCc------EEEEEeC
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT------EVVAASV  122 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v------~vi~Vs~  122 (384)
                      ..+..|+++|+|+++++ ..+|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|+      ++++|+.
T Consensus        29 ~~~~~g~~~p~f~l~~~-~~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~  106 (183)
T 3lwa_A           29 YDEADRQQLPDIGGDSL-MEEGTQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV  106 (183)
T ss_dssp             CCGGGCCCCCCCEEEBS-SSTTCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEEC
T ss_pred             cccccCCCCCceecccc-ccCCcEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC
Confidence            45679999999999654 1278999999999999999999 99999999999999999999999999      9999999


Q ss_pred             CC--HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        123 DS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       123 d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |+  ++..++|.+.+       +++||++.|.++.+.+.||.+.        +...|++||||++|+|+....|..
T Consensus       107 d~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~--------v~~~P~~~lid~~G~i~~~~~g~~  167 (183)
T 3lwa_A          107 RDYSRDIAQDFVTDN-------GLDYPSIYDPPFMTAASLGGVP--------ASVIPTTIVLDKQHRPAAVFLREV  167 (183)
T ss_dssp             SCCCHHHHHHHHHHT-------TCCSCEEECTTCGGGGGTTTCC--------TTCCSEEEEECTTSCEEEEECSCC
T ss_pred             CCCCHHHHHHHHHHc-------CCCccEEECCcchHHHHhccCC--------CCCCCeEEEECCCCcEEEEEcCCC
Confidence            87  78888888753       7899999999999999998521        223467899999999987666653

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.86  E-value=4.4e-22  Score=173.07  Aligned_cols=131  Identities=18%  Similarity=0.184  Sum_probs=112.1

Q ss_pred             cccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH--
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH--  125 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~--  125 (384)
                      ...+.+|+++|+|++.+.   +|++++|++++||++||+|| ++|||+|+.+++.|+++++++++.++++++|+.|..  
T Consensus        31 ~~~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~  106 (186)
T 1jfu_A           31 LTMASAPLKLPDLAFEDA---DGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDP  106 (186)
T ss_dssp             CEECCSCCBCCCCEEECT---TSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCT
T ss_pred             hccccCCCcCCCcEeEcC---CCCEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCH
Confidence            345679999999999877   99999999999999999999 999999999999999999999888999999999863  


Q ss_pred             HhHHhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        126 FTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +..++|.+.+       ++ .||++.|.++.+++.|++....       ...|++||||++|+|+....|..
T Consensus       107 ~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~P~~~lid~~G~i~~~~~g~~  164 (186)
T 1jfu_A          107 EKPKTFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA-------LGMPTSVLVDPQGCEIATIAGPA  164 (186)
T ss_dssp             THHHHHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC-------SSSSEEEEECTTSBEEEEEESCC
T ss_pred             HHHHHHHHHc-------CCCCCceEECCcchHHHHhcccccc-------CCCCEEEEECCCCCEEEEEecCC
Confidence            6677887743       66 5999999999999999995322       22467899999999987766653

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.86  E-value=8.6e-23  Score=174.57  Aligned_cols=130  Identities=14%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC------
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  123 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d------  123 (384)
                      .+++|+++|+|++.+.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++++++++++++|+.|      
T Consensus         5 ~~~~g~~~p~f~l~~~---~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~   80 (170)
T 2p5q_A            5 TSKNPESVHDFTVKDA---KENDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEE   80 (170)
T ss_dssp             -----CCGGGCEEEBT---TSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCC
T ss_pred             cCCCCccccceEEEcC---CCCEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCC
Confidence            4568999999999877   99999999999999999999 8999999999999999999999889999999986      


Q ss_pred             --CHHhHHhhcc-CccccCCCCccceeEE--eeCcchhHH-hh--------cCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        124 --SHFTHLAWVN-TPRKEGGLGKLKIPLL--SDLTHKISL-DY--------GVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       124 --~~~~~~~~~~-~~~~~~~~~~~~~p~l--~D~~~~~~~-~y--------gv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                        +.+..++|.+ .+       +++||++  .|.++..++ .|        |++.      ++++.++++||||++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~------~~~p~~~~~~lid~~G~i~  147 (170)
T 2p5q_A           81 PGTNDQITDFVCTRF-------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG------DDIQWNFAKFLVNKDGQVV  147 (170)
T ss_dssp             CSCHHHHHHHHHHHT-------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC------SCCCSTTCEEEECTTSCEE
T ss_pred             CCCHHHHHHHHHHhc-------CCCceeEeeeccCCCchHHHHHHHHhcCCCccC------CcccccccEEEECCCCCEE
Confidence              4667777776 32       7889999  677766542 23        4311      2223233789999999999


Q ss_pred             cccceee
Q psy17178        190 GYAGGAL  196 (384)
Q Consensus       190 ~~~~g~~  196 (384)
                      ....|..
T Consensus       148 ~~~~g~~  154 (170)
T 2p5q_A          148 DRYYPTT  154 (170)
T ss_dssp             EEECTTS
T ss_pred             EeeCCCC
Confidence            8776654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.86  E-value=2.4e-21  Score=167.24  Aligned_cols=118  Identities=19%  Similarity=0.216  Sum_probs=105.8

Q ss_pred             CCCCCCCCCceeeeEEcCcc--eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-CCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g--~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-d~~~~  317 (384)
                      +.+|+.+|+|+++++   +|  +.+++++++||++||+|| ++||++|..++|.|++++++    ++.|++|+. |+++.
T Consensus        30 ~~~G~~~P~f~l~~~---~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~~  101 (176)
T 3kh7_A           30 ALIGKPFPAFDLPSV---QDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNAA  101 (176)
T ss_dssp             TTTTSBCCCCEEEBS---SCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHHH
T ss_pred             cccCCcCCCcEeccc---CCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHHH
Confidence            468999999999955   66  899999999999999999 99999999999999999875    799999995 67888


Q ss_pred             HHHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .++|++++       +++|+ ++.|.++.+.+.||+      ..+|++||||++|+|++.+..
T Consensus       102 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  151 (176)
T 3kh7_A          102 AIKWLNEL-------HNPYLLSISDADGTLGLDLGV------YGAPETYLIDKQGIIRHKIVG  151 (176)
T ss_dssp             HHHHHHHT-------TCCCSEEEEETTCHHHHHHTC------CSSCEEEEECTTCBEEEEEES
T ss_pred             HHHHHHHc-------CCCCceEEECCcchHHHHcCC------CCCCeEEEECCCCeEEEEEcC
Confidence            88998876       77887 578999999999999      678999999999999998764

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.86  E-value=6.1e-22  Score=164.91  Aligned_cols=122  Identities=13%  Similarity=0.216  Sum_probs=105.4

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEcc--ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHH-HhCCcEEEEEeCCC-
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF-HQINTEVVAASVDS-  124 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~--~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~-~~~~v~vi~Vs~d~-  124 (384)
                      ..+++|+++|+|++.+.   +|+.++++  +++||++||+|| ++|||+|+.++|.|.++++++ ++.++.+++|+.|. 
T Consensus         3 ~~~~~g~~~p~~~l~~~---~g~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~   78 (148)
T 3fkf_A            3 AKVTVGKSAPYFSLPNE---KGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDID   78 (148)
T ss_dssp             --CCTTSBCCCCCEEBT---TSCEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSC
T ss_pred             ccccCCCcCCCeEeeCC---CCCEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCC
Confidence            35689999999999877   99999999  999999999999 999999999999999999999 88889999999986 


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeC---cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      .+..++|.+.   +    +++||++.|.   ...+++.||+.           ..|+++++|++|+|+...
T Consensus        79 ~~~~~~~~~~---~----~~~~~~~~d~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  131 (148)
T 3fkf_A           79 REAWETAIKK---D----TLSWDQVCDFTGLSSETAKQYAIL-----------TLPTNILLSPTGKILARD  131 (148)
T ss_dssp             HHHHHHHHHH---T----TCCSEEECCSCGGGCHHHHHTTCC-----------SSSEEEEECTTSBEEEES
T ss_pred             HHHHHHHHHH---c----CCCceEEEccCCcchHHHHhcCCC-----------CcCEEEEECCCCeEEEec
Confidence            5566666653   3    8899999998   67999999982           235788999999997543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.86  E-value=1.2e-21  Score=164.45  Aligned_cols=123  Identities=16%  Similarity=0.192  Sum_probs=107.5

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC--CCHHhH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DSHFTH  128 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~--d~~~~~  128 (384)
                      ..+|+++|+|++.+.   +|+.+++++++||++||.|| ++|||.|+.+++.|+++++++++.++.+++|+.  |+.+..
T Consensus         2 ~~~G~~~p~~~l~~~---~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~   77 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDL---HGKTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV   77 (153)
T ss_dssp             --CCTTCCSCEEECT---TSCEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHH
T ss_pred             CCCCCCCCCcEeecC---CCCCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHH
Confidence            358999999999877   99999999999999999999 999999999999999999999988999999994  567888


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++|.+..       +++||++.|.+.++++.||+.           ..|+++++|++|+|+....|.
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~i~~~~~g~  126 (153)
T 2l5o_A           78 RQYVKDY-------GLPFTVMYDADKAVGQAFGTQ-----------VYPTSVLIGKKGEILKTYVGE  126 (153)
T ss_dssp             HHHHHHT-------TCCSEEEECSSCHHHHHHTCC-----------SSSEEEEECSSSCCCEEEESS
T ss_pred             HHHHHHc-------CCCceEEcCchHHHHHHcCCC-----------ccCeEEEECCCCcEEEEEcCC
Confidence            8888743       789999999999999999982           235788999999998665553

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.86  E-value=2.7e-21  Score=172.01  Aligned_cols=126  Identities=10%  Similarity=-0.006  Sum_probs=98.3

Q ss_pred             CCCCCCCCceeeeEEcCc-ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        242 FVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~-g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      ..+..+|+|+++   |.+ |++++|++++||++||+|| ++||++|+ |+|.|++++++|+++|++||+||.|       
T Consensus        30 ~~~~~~pdF~l~---d~~~G~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~  104 (215)
T 2i3y_A           30 DEKGTIYDYEAI---ALNKNEYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEP  104 (215)
T ss_dssp             CCCCCGGGCEEE---BSSSSCEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred             cccCCcCCcEee---eCCCCCEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCC
Confidence            356789999998   558 9999999999999999999 99999998 9999999999999999999999964       


Q ss_pred             -CHHhHHHHhc------CccccCCCCCcceeEEecCc--hH----HHHHhC--------ceec-------C---CC-cee
Q psy17178        314 -SHFTHLAWVN------TPRKEGGLGKLKIPLLSDLT--HK----ISLDYG--------VYLS-------D---QG-HTL  361 (384)
Q Consensus       314 -~~~~~~~~~~------~~~~~~~~~~~~~~~~~D~~--~~----~~~~~g--------v~~~-------~---~~-~~~  361 (384)
                       +++.+++|++      ++       +++||++.|.+  +.    +.+.+.        ++..       +   .. ...
T Consensus       105 ~~~~~i~~f~~~~~~~~~~-------~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~n  177 (215)
T 2i3y_A          105 GDNKEILPGLKYVRPGGGF-------VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWN  177 (215)
T ss_dssp             SCHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCST
T ss_pred             CCHHHHHHHHHhccchhcc-------CccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccC
Confidence             4577888887      54       88999997643  32    222111        1100       0   00 123


Q ss_pred             eEEEEEeCCceEEEEEec
Q psy17178        362 DKYCLECYKMVIVYWFER  379 (384)
Q Consensus       362 p~~~lId~~G~i~~~~~~  379 (384)
                      |++||||++|+|++++..
T Consensus       178 pttfLID~~G~vv~~~~g  195 (215)
T 2i3y_A          178 FEKFLVGPDGIPVMRWSH  195 (215)
T ss_dssp             TCEEEECTTSCEEEEECT
T ss_pred             ceEEEECCCCeEEEEeCC
Confidence            789999999999998863

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.86  E-value=9.2e-22  Score=165.13  Aligned_cols=117  Identities=11%  Similarity=0.057  Sum_probs=101.0

Q ss_pred             CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCcc
Q psy17178        247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR  326 (384)
Q Consensus       247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~  326 (384)
                      +|.+.+..  ..+|+++++++++||++||+|| ++||++|+.++|.|+++++++++.++.+++|+.|+++..++|++++ 
T Consensus         3 ~pa~~~~~--~~~G~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~-   78 (151)
T 3raz_A            3 LSADELAG--WKDNTPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT-   78 (151)
T ss_dssp             ----CEEE--TTTCCEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS-
T ss_pred             CCcchhhc--ccCCCEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc-
Confidence            34444442  2599999999999999999999 9999999999999999999998889999999999999999999886 


Q ss_pred             ccCCCCCcceeEEecCc---hHHHHHhC--ceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        327 KEGGLGKLKIPLLSDLT---HKISLDYG--VYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       327 ~~~~~~~~~~~~~~D~~---~~~~~~~g--v~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                            +++||++.|.+   ..+.+.||  +      ..+|++||||++|+|++.+..
T Consensus        79 ------~~~~~~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  124 (151)
T 3raz_A           79 ------PVSYPIWRYTGANSRNFMKTYGNTV------GVLPFTVVEAPKCGYRQTITG  124 (151)
T ss_dssp             ------CCSSCEEEECCSCHHHHHHTTTCCS------CCSSEEEEEETTTTEEEECCS
T ss_pred             ------CCCCceEecCccchHHHHHHhCCcc------CCCCEEEEECCCCcEEEEECC
Confidence                  89999998764   67888999  6      578999999999999997653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.86  E-value=4e-21  Score=163.16  Aligned_cols=127  Identities=13%  Similarity=0.133  Sum_probs=110.0

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-HHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~~~~~  319 (384)
                      ..+|..+|+|++.   |.+|+.+++++++||++||+|| ++||+.|..++|.|++++++++++++.+++|+.|+ ++..+
T Consensus         8 ~~~g~~~p~~~l~---~~~g~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~   83 (165)
T 3or5_A            8 DARPTPAPSFSGV---TVDGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVK   83 (165)
T ss_dssp             CCCCCBCCCCEEE---CTTSCEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHH
T ss_pred             hcCCCCCCCceee---CCCCCEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHH
Confidence            4689999999998   5599999999999999999999 99999999999999999999998899999999885 67788


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|+++.       +++|+++.|.+ .+.+.|+.+....-..+|++||||++|+|++.+..
T Consensus        84 ~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g  135 (165)
T 3or5_A           84 NYMKTQ-------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVG  135 (165)
T ss_dssp             HHHHHH-------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECS
T ss_pred             HHHHHc-------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcC
Confidence            888876       88999999876 88889943221111678999999999999987754

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.86  E-value=3.3e-22  Score=177.42  Aligned_cols=138  Identities=7%  Similarity=-0.047  Sum_probs=101.9

Q ss_pred             cCCCCCCccEEEeeecCc-cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-------
Q psy17178         52 NLSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  123 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~-g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-------  123 (384)
                      ..++++|+|++++.   + |++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++||+|+.|       
T Consensus        21 ~~~~~~p~f~l~~~---~~G~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~   96 (208)
T 2f8a_A           21 QSMQSVYAFSARPL---AGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN   96 (208)
T ss_dssp             -CCCCGGGCEECBT---TCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTC
T ss_pred             hhcCccCceEeeeC---CCCCCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCC
Confidence            46789999999877   8 9999999999999999999 9999999999999999999999999999999986       


Q ss_pred             -CHHhHHhhccCcc---ccCCCCccceeEEeeCc--chhHH-hhcCcccCC-----------C----C------ccccee
Q psy17178        124 -SHFTHLAWVNTPR---KEGGLGKLKIPLLSDLT--HKISL-DYGVYLSDQ-----------G----P------VRGSLL  175 (384)
Q Consensus       124 -~~~~~~~~~~~~~---~~~~~~~~~~p~l~D~~--~~~~~-~ygv~~~~~-----------g----~------~~g~~~  175 (384)
                       +.+.+++|++.++   ++    +++||+++|.+  ++.+. .|+.+....           |    .      ..++..
T Consensus        97 d~~~~i~~f~~~~~~~~~~----~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  172 (208)
T 2f8a_A           97 AKNEEILNSLKYVRPGGGF----EPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAW  172 (208)
T ss_dssp             SCHHHHHHHHHHTSSCTTC----CCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCS
T ss_pred             CCHHHHHHHHHhccccccc----ccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcccc
Confidence             3567778876110   22    78999997543  43321 222211000           0    0      001222


Q ss_pred             EEEEEEEecCCCcccccceeee
Q psy17178        176 STAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       176 ~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      .|++||||++|+|+....|...
T Consensus       173 ~p~tflID~~G~i~~~~~g~~~  194 (208)
T 2f8a_A          173 NFEKFLVGPDGVPLRRYSRRFQ  194 (208)
T ss_dssp             TTCEEEECTTSCEEEEECTTSC
T ss_pred             CceEEEEcCCCcEEEEeCCCCC
Confidence            3678999999999987776553

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.86  E-value=1.4e-21  Score=166.92  Aligned_cols=124  Identities=14%  Similarity=0.151  Sum_probs=100.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      +.+|+.+|+|+++   |.+|+++++++++||++||+|| ++||++|+.++|.|+++++++++++++|++|+.|       
T Consensus         6 ~~~g~~~p~f~l~---~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~   81 (170)
T 2p5q_A            6 SKNPESVHDFTVK---DAKENDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEP   81 (170)
T ss_dssp             ----CCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCC
T ss_pred             CCCCccccceEEE---cCCCCEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCC
Confidence            4589999999998   5599999999999999999999 8999999999999999999999989999999985       


Q ss_pred             -CHHhHHHHhc-CccccCCCCCcceeEE--ecCchHHHH-H--------hCceecCCCceee---EEEEEeCCceEEEEE
Q psy17178        314 -SHFTHLAWVN-TPRKEGGLGKLKIPLL--SDLTHKISL-D--------YGVYLSDQGHTLD---KYCLECYKMVIVYWF  377 (384)
Q Consensus       314 -~~~~~~~~~~-~~~~~~~~~~~~~~~~--~D~~~~~~~-~--------~gv~~~~~~~~~p---~~~lId~~G~i~~~~  377 (384)
                       +++.+++|++ ++       +++||++  .|.++.... .        +|++.    ..+|   ++||||++|+|++++
T Consensus        82 ~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~----~~~p~~~~~~lid~~G~i~~~~  150 (170)
T 2p5q_A           82 GTNDQITDFVCTRF-------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG----DDIQWNFAKFLVNKDGQVVDRY  150 (170)
T ss_dssp             SCHHHHHHHHHHHT-------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC----SCCCSTTCEEEECTTSCEEEEE
T ss_pred             CCHHHHHHHHHHhc-------CCCceeEeeeccCCCchHHHHHHHHhcCCCccC----CcccccccEEEECCCCCEEEee
Confidence             5677888887 55       7889998  576654431 2        24311    2355   899999999999977


Q ss_pred             ec
Q psy17178        378 ER  379 (384)
Q Consensus       378 ~~  379 (384)
                      ..
T Consensus       151 ~g  152 (170)
T 2p5q_A          151 YP  152 (170)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.86  E-value=1.3e-22  Score=177.46  Aligned_cols=134  Identities=10%  Similarity=0.028  Sum_probs=102.9

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-----
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-----  123 (384)
                      ..++.|+++|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++++++++|+.|     
T Consensus        20 s~~~~~~~~p~f~l~~~---~G~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~   95 (190)
T 2vup_A           20 SHMSAASSIFDFEVLDA---DHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQ   95 (190)
T ss_dssp             ----CCCSGGGSCCBBT---TSSBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTC
T ss_pred             ccCCCCCcccCeEEEcC---CCCEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCC
Confidence            45678999999999877   99999999999999999999 8999999999999999999999989999999998     


Q ss_pred             ---CHHhHHhhc-cCccccCCCCccceeEEe--eCcchhHH-hhcCcccCCCCcccceeEE------EEEEEecCCCccc
Q psy17178        124 ---SHFTHLAWV-NTPRKEGGLGKLKIPLLS--DLTHKISL-DYGVYLSDQGPVRGSLLST------AIFVYALTSPVNG  190 (384)
Q Consensus       124 ---~~~~~~~~~-~~~~~~~~~~~~~~p~l~--D~~~~~~~-~ygv~~~~~g~~~g~~~~~------~~~vid~~G~v~~  190 (384)
                         +++..++|. +..       +++||++.  |.++..++ .|+.+....   .++...|      ++||||++|+|+.
T Consensus        96 ~~~~~~~~~~~~~~~~-------~~~~p~l~~~D~~~~~~~~~~~~l~~~~---~~v~~~P~i~~~~~~~lid~~G~i~~  165 (190)
T 2vup_A           96 EPGNEEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTK---PGILKTKAIKWNFTSFLIDRDGVPVE  165 (190)
T ss_dssp             CCSCHHHHHHHHHHHH-------CCCSCBBCCCBSSSTTBCHHHHHHHHHS---CCGGGCCSCCSTTCEEEECTTSCEEE
T ss_pred             CCCCHHHHHHHHHHhc-------CCCeEEEeecccCcccccHHHHHHHhhc---CCcCCCccccccceEEEECCCCcEEE
Confidence               567778887 543       78999997  66665543 232211110   1112223      7899999999987


Q ss_pred             ccceee
Q psy17178        191 YAGGAL  196 (384)
Q Consensus       191 ~~~g~~  196 (384)
                      ...|..
T Consensus       166 ~~~g~~  171 (190)
T 2vup_A          166 RFSPGA  171 (190)
T ss_dssp             EECTTC
T ss_pred             EECCCC
Confidence            766544

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.86  E-value=2.6e-21  Score=164.33  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCC-chHHHHHHHHhHHHHHh----CCcEEEEEeCCC----HH
Q psy17178         56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ----INTEVVAASVDS----HF  126 (384)
Q Consensus        56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~----~~v~vi~Vs~d~----~~  126 (384)
                      .+|+|++.+.   +|++++|++++||++||+|| ++|||+ |+.++|.|+++++++++    .++++++||.|+    ++
T Consensus         2 ~ap~f~l~~~---~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~   77 (164)
T 2ggt_A            2 LGGPFSLTTH---TGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE   77 (164)
T ss_dssp             CCCCCEEEET---TSCEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH
T ss_pred             CCCCeEEEeC---CCCEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH
Confidence            5899999877   99999999999999999999 899998 99999999999999987    489999999986    66


Q ss_pred             hHHhhccCccccCCCCccceeEEe---eCcchhHHhhcCcccCC----CCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ----GPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~~~~~ygv~~~~~----g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+++|.+.+       +++||++.   |..++++++||+...+.    +......+.+++||||++|+|+....|..
T Consensus        78 ~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~  147 (164)
T 2ggt_A           78 AIANYVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK  147 (164)
T ss_dssp             HHHHHHHTT-------CSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC
T ss_pred             HHHHHHHHc-------CCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC
Confidence            778888753       78899984   55578999999954331    10111223458999999999997665543

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.85  E-value=8.2e-22  Score=172.28  Aligned_cols=120  Identities=13%  Similarity=0.053  Sum_probs=102.2

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  313 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------  313 (384)
                      ..|+.+|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|+.|        
T Consensus        23 ~~~~~~p~f~l~---~~~G~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~   98 (190)
T 2vup_A           23 SAASSIFDFEVL---DADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPG   98 (190)
T ss_dssp             -CCCSGGGSCCB---BTTSSBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCS
T ss_pred             CCCCcccCeEEE---cCCCCEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCC
Confidence            568899999998   5599999999999999999999 9999999999999999999999989999999997        


Q ss_pred             CHHhHHHHh-cCccccCCCCCcceeEEe--cCchHHHH---------HhCceecCCCceee------EEEEEeCCceEEE
Q psy17178        314 SHFTHLAWV-NTPRKEGGLGKLKIPLLS--DLTHKISL---------DYGVYLSDQGHTLD------KYCLECYKMVIVY  375 (384)
Q Consensus       314 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~--D~~~~~~~---------~~gv~~~~~~~~~p------~~~lId~~G~i~~  375 (384)
                      +++.+++|+ +++       +++||++.  |.++.+.+         .||+      ...|      ++||||++|+|++
T Consensus        99 ~~~~~~~~~~~~~-------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v------~~~P~i~~~~~~~lid~~G~i~~  165 (190)
T 2vup_A           99 NEEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTKPGI------LKTKAIKWNFTSFLIDRDGVPVE  165 (190)
T ss_dssp             CHHHHHHHHHHHH-------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCG------GGCCSCCSTTCEEEECTTSCEEE
T ss_pred             CHHHHHHHHHHhc-------CCCeEEEeecccCcccccHHHHHHHhhcCCc------CCCccccccceEEEECCCCcEEE
Confidence            678888888 666       78999986  55544322         2465      3455      9999999999999


Q ss_pred             EEe
Q psy17178        376 WFE  378 (384)
Q Consensus       376 ~~~  378 (384)
                      .+.
T Consensus       166 ~~~  168 (190)
T 2vup_A          166 RFS  168 (190)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            775

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=161.80  Aligned_cols=121  Identities=16%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcC-chHhHHHHHHHHHHHHh----CCcEEEEEeCC----CHHhH
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ----INTEVVAASVD----SHFTH  318 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~-C~~~~~~l~~l~~~~~~----~~v~vv~Is~d----~~~~~  318 (384)
                      |+|+++   |.+|+++++++++||++||+|| ++||++ |+.++|.|+++++++++    .+++|++||.|    +++.+
T Consensus         7 p~f~l~---~~~G~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~   82 (171)
T 2rli_A            7 GDFHLL---DHRGRARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM   82 (171)
T ss_dssp             SCCEEE---ETTSCEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred             CCeEEE---eCCCCEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence            899998   5599999999999999999999 999997 99999999999999985    58999999987    47788


Q ss_pred             HHHhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCC---------CceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQ---------GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~---------~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|++++       +.+|+++.|..   +.++++||+...+.         -.+.|++||||++|+|++++..
T Consensus        83 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g  148 (171)
T 2rli_A           83 ARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGR  148 (171)
T ss_dssp             HHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEES
T ss_pred             HHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECC
Confidence            8998876       78999998754   57899999853321         0245699999999999998763

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.85  E-value=1.4e-21  Score=168.76  Aligned_cols=123  Identities=19%  Similarity=0.261  Sum_probs=105.7

Q ss_pred             cccccCCCCCCccEEEeeecCcc--ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC-CC
Q psy17178         48 FYSKNLSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DS  124 (384)
Q Consensus        48 ~~~~~~G~~aP~f~l~~~~~~~g--~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~-d~  124 (384)
                      ...+.+|+++|+|++++.   +|  +++++++++||++||+|| ++|||+|+.++|.|++++++    ++++++|+. |+
T Consensus        27 ~~~~~~G~~~P~f~l~~~---~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~   98 (176)
T 3kh7_A           27 LPSALIGKPFPAFDLPSV---QDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDD   98 (176)
T ss_dssp             STTTTTTSBCCCCEEEBS---SCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCC
T ss_pred             ccccccCCcCCCcEeccc---CCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCC
Confidence            345679999999999887   66  899999999999999999 99999999999999998875    899999995 56


Q ss_pred             HHhHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++..++|.+..       +++|+ ++.|.++++++.||+.           ..|++||||++|+|+....|..
T Consensus        99 ~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~~  153 (176)
T 3kh7_A           99 NAAAIKWLNEL-------HNPYLLSISDADGTLGLDLGVY-----------GAPETYLIDKQGIIRHKIVGVV  153 (176)
T ss_dssp             HHHHHHHHHHT-------TCCCSEEEEETTCHHHHHHTCC-----------SSCEEEEECTTCBEEEEEESCC
T ss_pred             HHHHHHHHHHc-------CCCCceEEECCcchHHHHcCCC-----------CCCeEEEECCCCeEEEEEcCCC
Confidence            78888888753       77888 5899999999999992           2457899999999987766654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.85  E-value=1.6e-21  Score=168.83  Aligned_cols=125  Identities=12%  Similarity=0.103  Sum_probs=100.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      ...|..+|+|+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++||.|       
T Consensus        12 ~~~~~~~p~f~l~---d~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~   87 (180)
T 3kij_A           12 KPKINSFYAFEVK---DAKGRTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEP   87 (180)
T ss_dssp             CCCCCCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCC
T ss_pred             cCCcCcccceEEe---cCCCCEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCC
Confidence            3578999999998   5599999999999999999999 9999999999999999999999999999999964       


Q ss_pred             -CHHhHHHHhcC-ccccCCCCCcceeEEecCc--hH---HHHHhCceecCCCceeeE----EEEEeCCceEEEEEec
Q psy17178        314 -SHFTHLAWVNT-PRKEGGLGKLKIPLLSDLT--HK---ISLDYGVYLSDQGHTLDK----YCLECYKMVIVYWFER  379 (384)
Q Consensus       314 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~--~~---~~~~~gv~~~~~~~~~p~----~~lId~~G~i~~~~~~  379 (384)
                       +++.+++|+++ +       +++||++.+.+  +.   ....|.....   ...|+    +||||++|+|++.+..
T Consensus        88 d~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~p~~~~~~~lid~~G~i~~~~~g  154 (180)
T 3kij_A           88 RPSKEVESFARKNY-------GVTFPIFHKIKILGSEGEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRP  154 (180)
T ss_dssp             SCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTCCHHHHHHHHHH---TCCCSSTTCEEEECTTSCEEEEECT
T ss_pred             CCHHHHHHHHHHhc-------CCCCceeeeeeccCccccHHHHHHHhcC---CCCccccceEEEECCCCCEEEEECC
Confidence             67888888887 6       78999876322  21   1112211000   13566    9999999999998763

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.85  E-value=1.4e-21  Score=162.06  Aligned_cols=125  Identities=11%  Similarity=0.261  Sum_probs=106.8

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC----C
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----S  124 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d----~  124 (384)
                      ..+.+|+++|+|++.+.   +|+.+++++ +||++||+|| ++|||+|+.+++.|.++++++++.++.+++|+.|    +
T Consensus         7 ~~~~~g~~~p~~~l~~~---~g~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~   81 (145)
T 3erw_A            7 AEEKQPAVPAVFLMKTI---EGEDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQN   81 (145)
T ss_dssp             -----CCSCCEEEEECT---TSCEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSC
T ss_pred             ccccCCCcCCCceeecC---CCCEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCC
Confidence            35679999999999877   999999999 9999999999 9999999999999999999998788999999986    5


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+..++|.+.   +    +++||++.|.++.+++.|++           ...|+++++|++|+|+....|..
T Consensus        82 ~~~~~~~~~~---~----~~~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~g~~  135 (145)
T 3erw_A           82 QQVVEDFIKA---N----KLTFPIVLDSKGELMKEYHI-----------ITIPTSFLLNEKGEIEKTKIGPM  135 (145)
T ss_dssp             HHHHHHHHHH---T----TCCSCEEECSSSHHHHHTTC-----------CEESEEEEECTTCCEEEEEESCC
T ss_pred             HHHHHHHHHH---c----CCceeEEEcCchhHHHhcCc-----------CccCeEEEEcCCCcEEEEEcCCc
Confidence            6677777764   3    78999999999999999998           34568899999999987766654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.85  E-value=5.1e-21  Score=169.43  Aligned_cols=125  Identities=10%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             CCCCCCCceeeeEEcCc-ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178        243 VSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  313 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~-g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------  313 (384)
                      ....+|+|+++   |.+ |++++|++++||++||+|| ++|||+| .|+|.|++++++|+++|++||+||.|        
T Consensus        13 ~~~~~pdF~l~---d~~~G~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~   87 (207)
T 2r37_A           13 ISGTIYEYGAL---TIDGEEYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPG   87 (207)
T ss_dssp             --CCGGGCEEE---BTTSSCEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCS
T ss_pred             ccCccCCeEee---eCCCCCEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCC
Confidence            34679999998   558 9999999999999999999 9999999 79999999999999999999999954        


Q ss_pred             CHHhHHHHhc------CccccCCCCCcceeEEecCc--hH----HHHHhC--------ceec-------C---CC-ceee
Q psy17178        314 SHFTHLAWVN------TPRKEGGLGKLKIPLLSDLT--HK----ISLDYG--------VYLS-------D---QG-HTLD  362 (384)
Q Consensus       314 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~D~~--~~----~~~~~g--------v~~~-------~---~~-~~~p  362 (384)
                      +++.+++|++      ++       +++||++.|.+  +.    +.+.++        ++..       +   .. ...|
T Consensus        88 ~~~~i~~f~~~~~~~~~~-------~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~  160 (207)
T 2r37_A           88 ENSEILPTLKYVRPGGGF-------VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF  160 (207)
T ss_dssp             CHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred             CHHHHHHHHHhcchhhcc-------CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence            4577888887      54       88999997643  32    222111        1100       0   00 1347


Q ss_pred             EEEEEeCCceEEEEEec
Q psy17178        363 KYCLECYKMVIVYWFER  379 (384)
Q Consensus       363 ~~~lId~~G~i~~~~~~  379 (384)
                      ++||||++|+|++++..
T Consensus       161 ttflID~~G~i~~~~~g  177 (207)
T 2r37_A          161 EKFLVGPDGIPIMRWHH  177 (207)
T ss_dssp             CEEEECTTSCEEEEECT
T ss_pred             eEEEECCCCcEEEEECC
Confidence            89999999999998763

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.85  E-value=7.2e-22  Score=175.79  Aligned_cols=136  Identities=11%  Similarity=0.041  Sum_probs=99.8

Q ss_pred             cCCCCCCccEEEeeecCc-cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-------
Q psy17178         52 NLSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  123 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~-g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-------  123 (384)
                      ..+..+|+|++++.   + |++++|++|+||++||+|| ++|||+|+ |+|.|++++++|+++|++||+|+.|       
T Consensus        30 ~~~~~~pdF~l~d~---~~G~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~  104 (215)
T 2i3y_A           30 DEKGTIYDYEAIAL---NKNEYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEP  104 (215)
T ss_dssp             CCCCCGGGCEEEBS---SSSCEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred             cccCCcCCcEeeeC---CCCCEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCC
Confidence            46678999999887   8 9999999999999999999 99999999 9999999999999999999999964       


Q ss_pred             -CHHhHHhhccCcc---ccCCCCccceeEEeeCc--chhH-HhhcCcccCC-------CC----------cccceeEEEE
Q psy17178        124 -SHFTHLAWVNTPR---KEGGLGKLKIPLLSDLT--HKIS-LDYGVYLSDQ-------GP----------VRGSLLSTAI  179 (384)
Q Consensus       124 -~~~~~~~~~~~~~---~~~~~~~~~~p~l~D~~--~~~~-~~ygv~~~~~-------g~----------~~g~~~~~~~  179 (384)
                       +.+.+++|++.++   ++    +++||+++|.+  +..+ ..|+.+....       |.          ...+...+++
T Consensus       105 ~~~~~i~~f~~~~~~~~~~----~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~nptt  180 (215)
T 2i3y_A          105 GDNKEILPGLKYVRPGGGF----VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEK  180 (215)
T ss_dssp             SCHHHHHHHHHHTSSCTTC----CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCE
T ss_pred             CCHHHHHHHHHhccchhcc----CccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceE
Confidence             3567788876110   22    78999998653  4322 2343221100       00          0011112467


Q ss_pred             EEEecCCCcccccceee
Q psy17178        180 FVYALTSPVNGYAGGAL  196 (384)
Q Consensus       180 ~vid~~G~v~~~~~g~~  196 (384)
                      ||||++|+|+....|..
T Consensus       181 fLID~~G~vv~~~~g~~  197 (215)
T 2i3y_A          181 FLVGPDGIPVMRWSHRA  197 (215)
T ss_dssp             EEECTTSCEEEEECTTS
T ss_pred             EEECCCCeEEEEeCCCC
Confidence            99999999987665543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.85  E-value=5e-21  Score=159.23  Aligned_cols=120  Identities=12%  Similarity=0.107  Sum_probs=108.8

Q ss_pred             CCCCCCCCcee--eeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC------
Q psy17178        242 FVSKPAPFWQG--TAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  313 (384)
Q Consensus       242 ~~g~~~P~f~l--~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d------  313 (384)
                      .+|+.+|+|++  .++   +|+.+++++++||++||+|| ++||+.|..++|.|++++++++++ +.+++|+.|      
T Consensus         2 ~~g~~~P~f~~~~~~~---~g~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~   76 (148)
T 2b5x_A            2 KLRQPMPELTGEKAWL---NGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDL   76 (148)
T ss_dssp             CTTCBCCCCCCCSEEE---SCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTS
T ss_pred             CCCCCCCCCccccccc---cCcccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCcccc
Confidence            47899999999  544   99999999999999999999 999999999999999999999877 999999987      


Q ss_pred             CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++..++|++++       +++|+++.|.+..+.+.||+      ..+|+++|||++|++++.+..
T Consensus        77 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  129 (148)
T 2b5x_A           77 DPGKIKETAAEH-------DITQPIFVDSDHALTDAFEN------EYVPAYYVFDKTGQLRHFQAG  129 (148)
T ss_dssp             SHHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCC------CCSSEEEEECTTCBEEEEEES
T ss_pred             CHHHHHHHHHHc-------CCCcceEECCchhHHHHhCC------CCCCEEEEECCCCcEEEEecC
Confidence            577888888876       88999999999999999999      689999999999999997754

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.85  E-value=2.9e-21  Score=170.33  Aligned_cols=136  Identities=16%  Similarity=0.179  Sum_probs=103.6

Q ss_pred             ccccCCCCC--CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCC-chHHHHHHHHhHHHHHh---CCcEEEEEeC
Q psy17178         49 YSKNLSKPA--PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ---INTEVVAASV  122 (384)
Q Consensus        49 ~~~~~G~~a--P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~---~~v~vi~Vs~  122 (384)
                      ....+|+++  |+|++.+.   +|++++|++++||++||+|| ++|||+ |+.++|.|+++++++++   .++++++||.
T Consensus        11 ~~~~~g~~~~~p~f~l~d~---~G~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~   86 (200)
T 2b7k_A           11 ANRGYGKPSLGGPFHLEDM---YGNEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITC   86 (200)
T ss_dssp             -----CCCCCCCCCEEEET---TSCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEES
T ss_pred             hHhccCCCCcCCCEEEEcC---CCCEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEEC
Confidence            345689986  99999877   99999999999999999999 999997 99999999999999975   3899999999


Q ss_pred             C----CHHhHHhhccCccccCCCCccceeEEeeC---cchhHHhhcCccc-C----CCCcccceeEEEEEEEecCCCccc
Q psy17178        123 D----SHFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLS-D----QGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       123 d----~~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~ygv~~~-~----~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      |    +++.+++|.+.+       +.+|+.+.+.   .+.++++||+... +    .|......+++++||||++|+|+.
T Consensus        87 D~~~d~~~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~  159 (200)
T 2b7k_A           87 DPARDSPAVLKEYLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVD  159 (200)
T ss_dssp             CTTTCCHHHHHHHHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEE
T ss_pred             CCCCCCHHHHHHHHHHc-------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEE
Confidence            8    477888888754       6788888743   4789999999632 1    011112234568899999999987


Q ss_pred             cccee
Q psy17178        191 YAGGA  195 (384)
Q Consensus       191 ~~~g~  195 (384)
                      ...|.
T Consensus       160 ~~~g~  164 (200)
T 2b7k_A          160 ALGRN  164 (200)
T ss_dssp             EECTT
T ss_pred             EeCCC
Confidence            65543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.85  E-value=1.9e-21  Score=166.47  Aligned_cols=125  Identities=17%  Similarity=0.212  Sum_probs=107.8

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcC-chHhHHHHHHHHHHHHhC---CcEEEEEeCC----
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQI---NTEVVAASVD----  313 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~-C~~~~~~l~~l~~~~~~~---~v~vv~Is~d----  313 (384)
                      .+|+.+|+|+++   |.+| ++++++++||++||+|| ++||++ |+.++|.|++++++++++   +++|++||.|    
T Consensus        11 ~~G~~~p~f~l~---~~~g-~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d   85 (172)
T 2k6v_A           11 LLNPKPVDFALE---GPQG-PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERD   85 (172)
T ss_dssp             EEEEEECCCEEE---CSSS-EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTC
T ss_pred             ccCCCCCCeEEE---cCCC-CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCC
Confidence            468889999998   5599 99999999999999999 999997 999999999999999764   7999999976    


Q ss_pred             CHHhHHHHhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCCC---------ceeeEEEEEeCCceEEEEEec
Q psy17178        314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG---------HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~~---------~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++.+++|++++       +.+|+++.|++   +.++++||+......         .+.|++|||| +|+|++++..
T Consensus        86 ~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g  155 (172)
T 2k6v_A           86 PPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSP  155 (172)
T ss_dssp             CHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECH
T ss_pred             CHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECC
Confidence            467888898876       78999999988   688999998533210         3679999999 9999997753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.1e-21  Score=168.43  Aligned_cols=118  Identities=8%  Similarity=0.041  Sum_probs=89.9

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------C
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------S  314 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------~  314 (384)
                      .+..+|+|+++   |.+|+++++++++||++||+|| ++||++|+ ++|.|++++++++++++.|++||.|        +
T Consensus         8 ~~~~~~~f~l~---d~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~   82 (171)
T 3cmi_A            8 HMSEFYKLAPV---DKKGQPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGS   82 (171)
T ss_dssp             --CGGGGCCCB---BTTSCBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------
T ss_pred             chhheeeeEEE---cCCCCEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCC
Confidence            35678999998   5599999999999999999999 99999999 9999999999999999999999984        5


Q ss_pred             HHhHHHHh-cCccccCCCCCcceeEEecCc--hH-HH--------HHhCceecCCCceee------EEEEEeCCceEEEE
Q psy17178        315 HFTHLAWV-NTPRKEGGLGKLKIPLLSDLT--HK-IS--------LDYGVYLSDQGHTLD------KYCLECYKMVIVYW  376 (384)
Q Consensus       315 ~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~--~~-~~--------~~~gv~~~~~~~~~p------~~~lId~~G~i~~~  376 (384)
                      ++..++|+ +++       +++||++.|.+  +. +.        +.||+      ...|      ++||||++|+|++.
T Consensus        83 ~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v------~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           83 DEEIAQFCQLNY-------GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGM------LGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             -------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCS------SSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             HHHHHHHHHhcc-------CCCceEEeeccCCCccchHHHHHHHhccCCc------CCCCcccccceEEEECCCCCEEEE
Confidence            56777777 655       78999998644  22 22        23555      4567      89999999999997


Q ss_pred             Ee
Q psy17178        377 FE  378 (384)
Q Consensus       377 ~~  378 (384)
                      +.
T Consensus       150 ~~  151 (171)
T 3cmi_A          150 YS  151 (171)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.85  E-value=2.7e-21  Score=164.21  Aligned_cols=130  Identities=18%  Similarity=0.265  Sum_probs=111.0

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~  128 (384)
                      .+++|+++|+|++.+.   +|+++++++++||++||+|| ++|||+|+.++|.|+++++++++.++.+++|+.|+ .+..
T Consensus         7 ~~~~g~~~p~~~l~~~---~g~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~   82 (165)
T 3or5_A            7 ADARPTPAPSFSGVTV---DGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNV   82 (165)
T ss_dssp             CCCCCCBCCCCEEECT---TSCEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHH
T ss_pred             hhcCCCCCCCceeeCC---CCCEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH
Confidence            4579999999999877   99999999999999999999 99999999999999999999998899999999886 6777


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|.+..       +++||++.|.. ++.+.|+.+...     ++...|++||+|++|+|+....|..
T Consensus        83 ~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~-----~i~~~P~~~lid~~G~i~~~~~g~~  137 (165)
T 3or5_A           83 KNYMKTQ-------GIIYPVMMATP-ELIRAFNGYIDG-----GITGIPTSFVIDASGNVSGVIVGPR  137 (165)
T ss_dssp             HHHHHHH-------TCCSCEEECCH-HHHHHHHTTSTT-----CSCSSSEEEEECTTSBEEEEECSCC
T ss_pred             HHHHHHc-------CCCCceEecCH-HHHHHHhhhhcc-----CCCCCCeEEEECCCCcEEEEEcCCC
Confidence            7887743       78999999975 899999764321     2344568899999999987666644

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.84  E-value=7.5e-22  Score=168.99  Aligned_cols=133  Identities=17%  Similarity=0.162  Sum_probs=110.8

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCC-chHHHHHHHHhHHHHHhC---CcEEEEEeCCC--
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQI---NTEVVAASVDS--  124 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~v~vi~Vs~d~--  124 (384)
                      ..+|+++|+|++.+.   +| +++|++++||++||+|| ++|||+ |+.++|.|++++++++++   ++++++|+.|+  
T Consensus        10 ~~~G~~~p~f~l~~~---~g-~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~   84 (172)
T 2k6v_A           10 RLLNPKPVDFALEGP---QG-PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPER   84 (172)
T ss_dssp             EEEEEEECCCEEECS---SS-EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTT
T ss_pred             cccCCCCCCeEEEcC---CC-CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCC
Confidence            457899999999877   99 99999999999999999 999997 999999999999999865   79999999874  


Q ss_pred             --HHhHHhhccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCC----CcccceeEEEEEEEecCCCccccccee
Q psy17178        125 --HFTHLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG----PVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g----~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                        ++.+++|.+.+       +++||++.|..   ++++++||+.....+    ...++...|++|||| +|+|+....|.
T Consensus        85 d~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~  156 (172)
T 2k6v_A           85 DPPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPD  156 (172)
T ss_dssp             CCHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHH
T ss_pred             CCHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCC
Confidence              57778888753       78999999988   689999999754321    123345568899999 99998776665


Q ss_pred             e
Q psy17178        196 L  196 (384)
Q Consensus       196 ~  196 (384)
                      .
T Consensus       157 ~  157 (172)
T 2k6v_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.3e-22  Score=172.65  Aligned_cols=129  Identities=9%  Similarity=0.032  Sum_probs=92.3

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------C
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------S  124 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------~  124 (384)
                      -|..+|+|++++.   +|++++|++++||++||+|| ++|||+|+ ++|.|++++++|+++|+++++|+.|        +
T Consensus         8 ~~~~~~~f~l~d~---~G~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~   82 (171)
T 3cmi_A            8 HMSEFYKLAPVDK---KGQPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGS   82 (171)
T ss_dssp             --CGGGGCCCBBT---TSCBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------
T ss_pred             chhheeeeEEEcC---CCCEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCC
Confidence            4678899999877   99999999999999999999 99999999 9999999999999989999999984        4


Q ss_pred             HHhHHhhc-cCccccCCCCccceeEEeeCc--ch-hHHhhcCcccCCCCcccceeEE------EEEEEecCCCcccccce
Q psy17178        125 HFTHLAWV-NTPRKEGGLGKLKIPLLSDLT--HK-ISLDYGVYLSDQGPVRGSLLST------AIFVYALTSPVNGYAGG  194 (384)
Q Consensus       125 ~~~~~~~~-~~~~~~~~~~~~~~p~l~D~~--~~-~~~~ygv~~~~~g~~~g~~~~~------~~~vid~~G~v~~~~~g  194 (384)
                      .+..++|. +.   +    +++||++.|.+  +. ..+.|+++....   .|+...|      ++||||++|+|+....|
T Consensus        83 ~~~~~~~~~~~---~----~~~~p~~~d~d~~~~~~~~~~~~~~~~~---~~v~~~P~i~~~~~~~lid~~G~i~~~~~g  152 (171)
T 3cmi_A           83 DEEIAQFCQLN---Y----GVTFPIMKKIDVNGGNEDPVYKFLKSQK---SGMLGLRGIKWNFEKFLVDKKGKVYERYSS  152 (171)
T ss_dssp             -------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHS---CCSSSCCSCCSTTCEEEECSSSCEEEEECT
T ss_pred             HHHHHHHHHhc---c----CCCceEEeeccCCCccchHHHHHHHhcc---CCcCCCCcccccceEEEECCCCCEEEEeCC
Confidence            55666776 53   3    78999998744  33 344454432110   1122234      78999999999987666


Q ss_pred             ee
Q psy17178        195 AL  196 (384)
Q Consensus       195 ~~  196 (384)
                      ..
T Consensus       153 ~~  154 (171)
T 3cmi_A          153 LT  154 (171)
T ss_dssp             TS
T ss_pred             CC
Confidence            44

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.84  E-value=1.2e-21  Score=169.67  Aligned_cols=130  Identities=9%  Similarity=0.068  Sum_probs=100.3

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  123 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------  123 (384)
                      .+|..+|+|++++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|+++++|+.|        
T Consensus        13 ~~~~~~p~f~l~d~---~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d   88 (180)
T 3kij_A           13 PKINSFYAFEVKDA---KGRTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPR   88 (180)
T ss_dssp             CCCCCGGGCEEEBT---TSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCS
T ss_pred             CCcCcccceEEecC---CCCEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCC
Confidence            48999999999877   99999999999999999999 9999999999999999999999999999999965        


Q ss_pred             CHHhHHhhccCccccCCCCccceeEEeeC--cchhHH-hhcCcccCCCCcccceeEEE----EEEEecCCCcccccceee
Q psy17178        124 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISL-DYGVYLSDQGPVRGSLLSTA----IFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~--~~~~~~-~ygv~~~~~g~~~g~~~~~~----~~vid~~G~v~~~~~g~~  196 (384)
                      +++..++|.+.  ++    +++||++.+.  .+..+. .|+.....      ....+.    +||||++|+|+....|..
T Consensus        89 ~~~~~~~~~~~--~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~p~~~~~~~lid~~G~i~~~~~g~~  156 (180)
T 3kij_A           89 PSKEVESFARK--NY----GVTFPIFHKIKILGSEGEPAFRFLVDS------SKKEPRWNFWKYLVNPEGQVVKFWRPEE  156 (180)
T ss_dssp             CHHHHHHHHHH--HH----CCCSCBBCCCCCSSTTCCHHHHHHHHH------HTCCCSSTTCEEEECTTSCEEEEECTTC
T ss_pred             CHHHHHHHHHH--hc----CCCCceeeeeeccCccccHHHHHHHhc------CCCCccccceEEEECCCCCEEEEECCCC
Confidence            56777888774  03    7899997643  232211 22211110      001233    789999999998776665


Q ss_pred             e
Q psy17178        197 Y  197 (384)
Q Consensus       197 ~  197 (384)
                      .
T Consensus       157 ~  157 (180)
T 3kij_A          157 P  157 (180)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.84  E-value=3.6e-21  Score=160.12  Aligned_cols=120  Identities=16%  Similarity=0.092  Sum_probs=103.8

Q ss_pred             CCCCCCC-ceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCC-CHHhHH
Q psy17178        243 VSKPAPF-WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD-SHFTHL  319 (384)
Q Consensus       243 ~g~~~P~-f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d-~~~~~~  319 (384)
                      +|+.+|+ |+++++   +|+.+++++++||++||+|| ++||++|+.++|.|+++++++++ .++.|++|+.| +.+..+
T Consensus         3 ~~~~~P~~f~l~~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~   78 (144)
T 1i5g_A            3 LKKFFPYSTNVLKG---AAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK   78 (144)
T ss_dssp             TTTSCSSCSEEEET---TEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred             hhhhCCCceEEEcC---CCCEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence            5788999 999854   99999999999999999999 99999999999999999999985 68999999998 577888


Q ss_pred             HHhcCccccCCCCCcceeEEe-cCchHHHHHhCceecCCCceeeEEEEEe-CCceEEEEEe
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLDKYCLEC-YKMVIVYWFE  378 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~~~~~~p~~~lId-~~G~i~~~~~  378 (384)
                      +|++++.      ...+++.. |....+.+.||+      ..+|+++||| ++|+|++.+.
T Consensus        79 ~~~~~~~------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A           79 DYYAKMP------WLALPFEDRKGMEFLTTGFDV------KSIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             HHHTTCS------SEECCTTCHHHHHHHHHHTTC------CSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHhCC------ccccccCchHHHHHHHHHcCC------CCCCEEEEEECCCCcEEeccc
Confidence            8888751      23566554 556899999999      6899999999 9999998654

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.84  E-value=4.5e-21  Score=160.69  Aligned_cols=124  Identities=18%  Similarity=0.207  Sum_probs=106.1

Q ss_pred             cccCCCCCC-ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHh
Q psy17178         50 SKNLSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT  127 (384)
Q Consensus        50 ~~~~G~~aP-~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~  127 (384)
                      .+++|+++| +|++.+.   +|+++++++++||+++|+|| ++|||+|+.+++.|+++++++++.++.+++|+.|+ .+.
T Consensus         2 ~l~~G~~~p~~f~l~~~---~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~   77 (152)
T 2lja_A            2 SLRSGNPSAASFSYPDI---NGKTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKA   77 (152)
T ss_dssp             CTTTTCCCSSSCEEEET---TTEEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHH
T ss_pred             ccccCCCCCcccEeecC---CCCEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHH
Confidence            567999999 9999887   99999999999999999999 99999999999999999999988899999999987 456


Q ss_pred             HHhhccCccccCCCCccc-eeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        128 HLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~-~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .++|.+..       +++ ++++.|.+.++++.||+.        +   .|+++++|++|+|+....|.
T Consensus        78 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~--------~---~P~~~lid~~G~i~~~~~g~  128 (152)
T 2lja_A           78 WENMVTKD-------QLKGIQLHMGTDRTFMDAYLIN--------G---IPRFILLDRDGKIISANMTR  128 (152)
T ss_dssp             HHHHHHHH-------TCCSEEEECSSCTHHHHHTTCC--------S---SCCEEEECTTSCEEESSCCC
T ss_pred             HHHHHHhc-------CCCCceeecCcchhHHHHcCcC--------C---CCEEEEECCCCeEEEccCCC
Confidence            67776643       455 577888889999999982        2   35688999999998765553

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.84  E-value=2.1e-21  Score=165.30  Aligned_cols=114  Identities=12%  Similarity=0.129  Sum_probs=105.7

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  313 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------  313 (384)
                      .+|+.+|+|++.   |.+|+.+++++++||++||+|| ++||++|..++|.|++++++++  ++.|++|+.|        
T Consensus        12 ~~g~~~p~~~l~---~~~g~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~   85 (165)
T 3ha9_A           12 EVLEREASFSLT---TIDGEVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKAL   85 (165)
T ss_dssp             HHHHHHHCCCEE---BTTSCEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHH
T ss_pred             cccCcCCCCEee---cCCCCEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccccc
Confidence            578899999998   4599999999999999999999 9999999999999999999987  8999999997        


Q ss_pred             -----------CHHhHHHHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        314 -----------SHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       314 -----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                                 +++..++|.+++       ++ +|+++.| ++.+.+.|++      ..+|++||||++|+|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d-~~~~~~~~~v------~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           86 GLNKPGYPPPDTPEMFRKFIANY-------GDPSWIMVMD-DGSLVEKFNV------RSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             TCCSTTSCCCCCHHHHHHHHHHH-------SCTTSEEEEC-CSHHHHHTTC------CSSSEEEEEETTCCEEE
T ss_pred             ccccccCCCCCCHHHHHHHHHHc-------CCCCeeEEeC-hHHHHHHhCC------CCceEEEEEcCCCcEEE
Confidence                       677888888876       78 9999999 9999999999      68899999999999998

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.84  E-value=1.4e-21  Score=173.02  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=98.0

Q ss_pred             CCCCCCccEEEeeecCc-cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--------
Q psy17178         53 LSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------  123 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~-g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--------  123 (384)
                      ....+|+|++++.   + |++++|++++||++||+|| ++|||+| .|+|.|++++++|+++|++||+|+.|        
T Consensus        13 ~~~~~pdF~l~d~---~~G~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~   87 (207)
T 2r37_A           13 ISGTIYEYGALTI---DGEEYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPG   87 (207)
T ss_dssp             --CCGGGCEEEBT---TSSCEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCS
T ss_pred             ccCccCCeEeeeC---CCCCEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCC
Confidence            5578999999877   8 9999999999999999999 9999999 79999999999999999999999964        


Q ss_pred             CHHhHHhhccCcc---ccCCCCccceeEEeeCc--chh-HHhhcCcccCC-------CC----------cccceeEEEEE
Q psy17178        124 SHFTHLAWVNTPR---KEGGLGKLKIPLLSDLT--HKI-SLDYGVYLSDQ-------GP----------VRGSLLSTAIF  180 (384)
Q Consensus       124 ~~~~~~~~~~~~~---~~~~~~~~~~p~l~D~~--~~~-~~~ygv~~~~~-------g~----------~~g~~~~~~~~  180 (384)
                      +.+.+++|++.++   ++    +++||+++|.+  +.. ...|+.+....       |.          ..++...+++|
T Consensus        88 ~~~~i~~f~~~~~~~~~~----~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttf  163 (207)
T 2r37_A           88 ENSEILPTLKYVRPGGGF----VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKF  163 (207)
T ss_dssp             CHHHHHHHHHHTSSCTTC----CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEE
T ss_pred             CHHHHHHHHHhcchhhcc----CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEE
Confidence            3567788876110   22    78999998643  432 22333221100       00          00111224679


Q ss_pred             EEecCCCcccccceee
Q psy17178        181 VYALTSPVNGYAGGAL  196 (384)
Q Consensus       181 vid~~G~v~~~~~g~~  196 (384)
                      |||++|+|+....|..
T Consensus       164 lID~~G~i~~~~~g~~  179 (207)
T 2r37_A          164 LVGPDGIPIMRWHHRT  179 (207)
T ss_dssp             EECTTSCEEEEECTTS
T ss_pred             EECCCCcEEEEECCCC
Confidence            9999999987765544

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.84  E-value=1.1e-20  Score=179.84  Aligned_cols=123  Identities=12%  Similarity=-0.007  Sum_probs=112.2

Q ss_pred             CCCCCCCCCCce-----eeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-
Q psy17178        240 IPFVSKPAPFWQ-----GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-  313 (384)
Q Consensus       240 ~~~~g~~~P~f~-----l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-  313 (384)
                      .+.+|..+|+|+     +.   |.+|+++++++++||++||+|| ++||++|+.++|.|++++++|+++++.|++|+.| 
T Consensus        50 ~l~vG~~aPdF~~~~~wL~---d~dG~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~  125 (352)
T 2hyx_A           50 QLESCGTAPDLKGITGWLN---TPGNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE  125 (352)
T ss_dssp             SCCCCCBCCCCCSCCEEES---SGGGCCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCS
T ss_pred             ccCCCCcCCCccccccccC---CCCCCEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCc
Confidence            357899999999     66   5599999999999999999999 9999999999999999999999889999999975 


Q ss_pred             -----CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        314 -----SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       314 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                           +++..++|++++       +++||++.|.+..+.+.|++      ..+|++||||++|+|++.+..
T Consensus       126 ~~~~d~~~~~~~~~~~~-------~l~fpv~~D~~~~l~~~ygV------~~~Pt~~lID~~G~Iv~~~~G  183 (352)
T 2hyx_A          126 YAFEKVPGNVAKGAANL-------GISYPIALDNNYATWTNYRN------RYWPAEYLIDATGTVRHIKFG  183 (352)
T ss_dssp             SGGGGCHHHHHHHHHHH-------TCCSCEEECTTSHHHHHTTC------CEESEEEEECTTSBEEEEEES
T ss_pred             ccccCCHHHHHHHHHHc-------CCCccEEeCCcHHHHHHcCC------CccCEEEEEeCCCeEEEEEcC
Confidence                 577888888876       88999999999999999999      689999999999999997753

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.84  E-value=1.9e-20  Score=165.06  Aligned_cols=127  Identities=18%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             CCCCCC--CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcC-chHhHHHHHHHHHHHHh---CCcEEEEEeCC--
Q psy17178        242 FVSKPA--PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ---INTEVVAASVD--  313 (384)
Q Consensus       242 ~~g~~~--P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~-C~~~~~~l~~l~~~~~~---~~v~vv~Is~d--  313 (384)
                      .+|+.+  |+|+++   |.+|+++++++++||++||+|| ++|||+ |+.++|.|+++++++++   .+++|++||+|  
T Consensus        14 ~~g~~~~~p~f~l~---d~~G~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~   89 (200)
T 2b7k_A           14 GYGKPSLGGPFHLE---DMYGNEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA   89 (200)
T ss_dssp             --CCCCCCCCCEEE---ETTSCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred             ccCCCCcCCCEEEE---cCCCCEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCC
Confidence            467775  999998   5599999999999999999999 999997 99999999999999985   38999999998  


Q ss_pred             --CHHhHHHHhcCccccCCCCCcceeEEecC---chHHHHHhCcee-cC----CC-----ceeeEEEEEeCCceEEEEEe
Q psy17178        314 --SHFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYL-SD----QG-----HTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       314 --~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~-~~----~~-----~~~p~~~lId~~G~i~~~~~  378 (384)
                        +++.+++|++++       +.+|+.+.+.   .+.+++.||+.. .+    .+     .+.|++||||++|+|++.+.
T Consensus        90 ~d~~~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~  162 (200)
T 2b7k_A           90 RDSPAVLKEYLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG  162 (200)
T ss_dssp             TCCHHHHHHHHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred             CCCHHHHHHHHHHc-------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence              578889999876       6788888643   478899999862 11    01     25678999999999999875


Q ss_pred             c
Q psy17178        379 R  379 (384)
Q Consensus       379 ~  379 (384)
                      .
T Consensus       163 g  163 (200)
T 2b7k_A          163 R  163 (200)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.84  E-value=9.4e-21  Score=159.22  Aligned_cols=118  Identities=19%  Similarity=0.189  Sum_probs=108.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC---CCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~---d~~~~  317 (384)
                      ..+|+.+|+|+++   |.+|+.+++++++ |++||+|| ++||++|..+++.|+++++++   ++.+++|+.   |+++.
T Consensus         5 l~~g~~~p~f~l~---~~~g~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~   76 (154)
T 3ia1_A            5 VKPGEPLPDFLLL---DPKGQPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREV   76 (154)
T ss_dssp             CCSBEECCCCCEE---CTTSCEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHH
T ss_pred             CCCCCcCCceEEE---CCCCCEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHH
Confidence            4689999999998   5599999999999 99999999 999999999999999999999   799999999   77888


Q ss_pred             HHHHhcCccccCCCCCcceeEEec---CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .++|++++       +++|+++.|   ....+.+.||+      ..+|++||||++|+|++.+..
T Consensus        77 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  128 (154)
T 3ia1_A           77 VLEYMKTY-------PRFIPLLASDRDRPHEVAARFKV------LGQPWTFVVDREGKVVALFAG  128 (154)
T ss_dssp             HHHHHTTC-------TTEEECBCCSSCCHHHHHTTSSB------CSSCEEEEECTTSEEEEEEES
T ss_pred             HHHHHHHc-------CCCcccccccccchHHHHHHhCC------CcccEEEEECCCCCEEEEEcC
Confidence            88998877       889999998   66899999999      688999999999999997764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.84  E-value=2e-21  Score=163.03  Aligned_cols=121  Identities=12%  Similarity=0.086  Sum_probs=99.2

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  134 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~  134 (384)
                      -++|+|++. .   +|++++|++++||++||+|| ++|||+|+.++|.|+++++++++.++++++|+.|+.+..++|.+.
T Consensus         3 ~pa~~~~~~-~---~G~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~   77 (151)
T 3raz_A            3 LSADELAGW-K---DNTPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQ   77 (151)
T ss_dssp             ----CEEET-T---TCCEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCcchhhcc-c---CCCEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHH
Confidence            345555542 3   89999999999999999999 999999999999999999999888999999999999999999885


Q ss_pred             ccccCCCCccceeEEeeCc---chhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        135 PRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       135 ~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .       +++||++.|..   .++++.||...         ...|++||||++|+|+....|..
T Consensus        78 ~-------~~~~~~~~~~~~~~~~~~~~~~~~v---------~~~P~~~lid~~G~i~~~~~g~~  126 (151)
T 3raz_A           78 T-------PVSYPIWRYTGANSRNFMKTYGNTV---------GVLPFTVVEAPKCGYRQTITGEV  126 (151)
T ss_dssp             S-------CCSSCEEEECCSCHHHHHHTTTCCS---------CCSSEEEEEETTTTEEEECCSCC
T ss_pred             c-------CCCCceEecCccchHHHHHHhCCcc---------CCCCEEEEECCCCcEEEEECCCC
Confidence            3       88999998874   46788888211         22357899999999987777665

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=159.84  Aligned_cols=128  Identities=16%  Similarity=0.175  Sum_probs=104.7

Q ss_pred             CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCC-chHHHHHHHHhHHHHHh----CCcEEEEEeCCC----HHhH
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ----INTEVVAASVDS----HFTH  128 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~----~~v~vi~Vs~d~----~~~~  128 (384)
                      |+|++.+.   +|++++|++++||++||+|| ++|||+ |+.++|.|++++++|++    .++++++||.|+    ++.+
T Consensus         7 p~f~l~~~---~G~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~   82 (171)
T 2rli_A            7 GDFHLLDH---RGRARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM   82 (171)
T ss_dssp             SCCEEEET---TSCEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred             CCeEEEeC---CCCEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence            99999877   99999999999999999999 999997 99999999999999975    589999999984    6777


Q ss_pred             HhhccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCCC----cccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGP----VRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~----~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|.+.+       +++|+++.|..   ++++++||+...+...    ...+.+.+++||||++|+|+....|..
T Consensus        83 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~  150 (171)
T 2rli_A           83 ARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR  150 (171)
T ss_dssp             HHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC
T ss_pred             HHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC
Confidence            8887753       78899998754   5799999996543111    122334568999999999997765543

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=1.5e-22  Score=171.34  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=108.9

Q ss_pred             CCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHH-HHHHHH-hCCcEEEEEeCCCH-H
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND-RLEEFH-QINTEVVAASVDSH-F  316 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~-l~~~~~-~~~v~vv~Is~d~~-~  316 (384)
                      .+.+|+.+|+|+++++   +|+.+++++++||++||+|| ++||++|+.++|.|++ ++++++ +.++.+++|+.|+. +
T Consensus         6 ~l~~g~~~p~f~l~~~---~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~   81 (159)
T 2ls5_A            6 IVRIGEMAPDFTITLT---DGKQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE   81 (159)
Confidence            3468999999999855   99999999999999999999 9999999999999999 999998 78899999999864 4


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ..++|.+++       +++||++.|+++.+.+.||+..    ...|++||||++|+|++.+.
T Consensus        82 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~----~~~P~~~lid~~G~i~~~~~  132 (159)
T 2ls5_A           82 KVLAFAKST-------GVTYPLGLDPGADIFAKYALRD----AGITRNVLIDREGKIVKLTR  132 (159)
Confidence            567777765       7899999999999999999621    35899999999999998765

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.84  E-value=2.5e-20  Score=152.48  Aligned_cols=116  Identities=18%  Similarity=0.221  Sum_probs=103.0

Q ss_pred             CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEe------CCCHHhHH
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS------VDSHFTHL  319 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is------~d~~~~~~  319 (384)
                      ++|+|+++   |.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++ +.++.+++|+      .++.+..+
T Consensus         1 ~~p~f~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~~   75 (138)
T 4evm_A            1 EVADFELM---GVDGKTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGHKGEQSEADFK   75 (138)
T ss_dssp             CCCCCEEE---BTTSCEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTSTTCCCHHHHH
T ss_pred             CCCcceeE---CCCCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCCchhhHHHHH
Confidence            47999998   5599999999999999999999 999999999999999999984 4579999993      45677888


Q ss_pred             HHhcCccccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|.+.+       ++ +|+++.|.++.+.+.||+      ...|+++|||++|+|++.+..
T Consensus        76 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  123 (138)
T 4evm_A           76 NWYKGL-------DYKNLPVLVDPSGKLLETYGV------RSYPTQAFIDKEGKLVKTHPG  123 (138)
T ss_dssp             HHHTTC-------CCTTCCEEECTTCHHHHHTTC------CSSSEEEEECTTCCEEEEEES
T ss_pred             HHHhhc-------CCCCeeEEECcchHHHHHcCc------ccCCeEEEECCCCcEEEeecC
Confidence            888776       66 999999999999999999      688999999999999998764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.8e-22  Score=170.93  Aligned_cols=126  Identities=17%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHH-hHHHHH-hCCcEEEEEeCCCH-H
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND-RLEEFH-QINTEVVAASVDSH-F  126 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~-~~~~~~-~~~v~vi~Vs~d~~-~  126 (384)
                      .+++|+++|+|++.+.   +|+++++++++||+++|+|| ++|||+|+.++|.|++ ++++++ +.++.+++|+.|+. +
T Consensus         6 ~l~~g~~~p~f~l~~~---~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~   81 (159)
T 2ls5_A            6 IVRIGEMAPDFTITLT---DGKQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE   81 (159)
Confidence            4679999999999887   99999999999999999999 9999999999999998 999998 77899999998864 4


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ..++|.+..       +++||++.|.++++++.||+..         ...|++++||++|+|+....|.
T Consensus        82 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~---------~~~P~~~lid~~G~i~~~~~g~  134 (159)
T 2ls5_A           82 KVLAFAKST-------GVTYPLGLDPGADIFAKYALRD---------AGITRNVLIDREGKIVKLTRLY  134 (159)
Confidence            566776643       7899999999999999999732         1246789999999999877663

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.83  E-value=2e-21  Score=165.53  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=105.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC------
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  123 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d------  123 (384)
                      .+++|+++|+|++.+.   +|+.+++++++||++||+|| ++|||+|+.++|.|.+++++++  ++.+++|+.|      
T Consensus        10 ~~~~g~~~p~~~l~~~---~g~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~   83 (165)
T 3ha9_A           10 SEEVLEREASFSLTTI---DGEVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALK   83 (165)
T ss_dssp             HHHHHHHHHCCCEEBT---TSCEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHH
T ss_pred             cccccCcCCCCEeecC---CCCEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccc
Confidence            4568999999999887   99999999999999999999 9999999999999999999987  8999999997      


Q ss_pred             -------------CHHhHHhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        124 -------------SHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       124 -------------~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                                   +.+..++|.+..       ++ +||++.| ++++++.||+.           ..|+++|||++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d-~~~~~~~~~v~-----------~~P~~~lid~~G~i~  144 (165)
T 3ha9_A           84 ALGLNKPGYPPPDTPEMFRKFIANY-------GDPSWIMVMD-DGSLVEKFNVR-----------SIDYIVIMDKSSNVL  144 (165)
T ss_dssp             HHTCCSTTSCCCCCHHHHHHHHHHH-------SCTTSEEEEC-CSHHHHHTTCC-----------SSSEEEEEETTCCEE
T ss_pred             ccccccccCCCCCCHHHHHHHHHHc-------CCCCeeEEeC-hHHHHHHhCCC-----------CceEEEEEcCCCcEE
Confidence                         567777777743       77 9999999 99999999982           235789999999998


Q ss_pred             cccceee
Q psy17178        190 GYAGGAL  196 (384)
Q Consensus       190 ~~~~g~~  196 (384)
                      .  .|..
T Consensus       145 ~--~g~~  149 (165)
T 3ha9_A          145 Y--AGTT  149 (165)
T ss_dssp             E--EEES
T ss_pred             E--eCCC
Confidence            6  4443

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.83  E-value=3.7e-21  Score=160.03  Aligned_cols=122  Identities=15%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             ccCCCCCCccEE--EeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-----
Q psy17178         51 KNLSKPAPFWQG--TAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  123 (384)
Q Consensus        51 ~~~G~~aP~f~l--~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-----  123 (384)
                      +++|+++|+|++  .+.   +|+.+++++++||++||.|| ++|||+|+.++|.|++++++++++ +.+++|+.|     
T Consensus         1 l~~g~~~P~f~~~~~~~---~g~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~   75 (148)
T 2b5x_A            1 MKLRQPMPELTGEKAWL---NGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDD   75 (148)
T ss_dssp             CCTTCBCCCCCCCSEEE---SCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTT
T ss_pred             CCCCCCCCCCccccccc---cCcccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccc
Confidence            468999999998  566   89999999999999999999 999999999999999999999876 999999987     


Q ss_pred             -CHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        124 -SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                       +.+..++|.+.   +    +++||++.|..+++++.||+.           ..|+++++|++|+++....|.
T Consensus        76 ~~~~~~~~~~~~---~----~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~  130 (148)
T 2b5x_A           76 LDPGKIKETAAE---H----DITQPIFVDSDHALTDAFENE-----------YVPAYYVFDKTGQLRHFQAGG  130 (148)
T ss_dssp             SSHHHHHHHHHH---T----TCCSCEEECSSCHHHHHTCCC-----------CSSEEEEECTTCBEEEEEESC
T ss_pred             cCHHHHHHHHHH---c----CCCcceEECCchhHHHHhCCC-----------CCCEEEEECCCCcEEEEecCC
Confidence             46677777764   3    789999999999999999982           245788999999998766554

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.83  E-value=2.7e-20  Score=155.98  Aligned_cols=121  Identities=18%  Similarity=0.199  Sum_probs=106.3

Q ss_pred             CCCCCCCC-CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-HHhH
Q psy17178        241 PFVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  318 (384)
Q Consensus       241 ~~~g~~~P-~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~~~~  318 (384)
                      ..+|+.+| +|+++++   +|+.+++++++||++||+|| ++||+.|..+++.|++++++++++++.+++|+.|+ .+..
T Consensus         3 l~~G~~~p~~f~l~~~---~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~   78 (152)
T 2lja_A            3 LRSGNPSAASFSYPDI---NGKTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAW   78 (152)
T ss_dssp             TTTTCCCSSSCEEEET---TTEEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHH
T ss_pred             cccCCCCCcccEeecC---CCCEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHH
Confidence            35799999 9999854   99999999999999999999 99999999999999999999988889999999985 4567


Q ss_pred             HHHhcCccccCCCCCcc-eeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++|++..       +++ ++++.|.+..+.+.||+      ..+|+++|||++|+|++.+.
T Consensus        79 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  126 (152)
T 2lja_A           79 ENMVTKD-------QLKGIQLHMGTDRTFMDAYLI------NGIPRFILLDRDGKIISANM  126 (152)
T ss_dssp             HHHHHHH-------TCCSEEEECSSCTHHHHHTTC------CSSCCEEEECTTSCEEESSC
T ss_pred             HHHHHhc-------CCCCceeecCcchhHHHHcCc------CCCCEEEEECCCCeEEEccC
Confidence            7777765       444 56777888999999999      68899999999999999654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.83  E-value=1.1e-20  Score=179.85  Aligned_cols=126  Identities=14%  Similarity=0.069  Sum_probs=110.4

Q ss_pred             ccccCCCCCCccE-----EEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         49 YSKNLSKPAPFWQ-----GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        49 ~~~~~G~~aP~f~-----l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ..+.+|+++|+|+     +.+.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++++++++|+.|
T Consensus        49 ~~l~vG~~aPdF~~~~~wL~d~---dG~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d  124 (352)
T 2hyx_A           49 AQLESCGTAPDLKGITGWLNTP---GNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTP  124 (352)
T ss_dssp             SSCCCCCBCCCCCSCCEEESSG---GGCCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cccCCCCcCCCccccccccCCC---CCCEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            4578999999999     7666   99999999999999999999 8999999999999999999999889999999975


Q ss_pred             ------CHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        124 ------SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       124 ------~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                            +++..++|.+.   +    +++||++.|.+.++++.|++           ...|++||||++|+|+....|..
T Consensus       125 ~~~~~d~~~~~~~~~~~---~----~l~fpv~~D~~~~l~~~ygV-----------~~~Pt~~lID~~G~Iv~~~~G~~  185 (352)
T 2hyx_A          125 EYAFEKVPGNVAKGAAN---L----GISYPIALDNNYATWTNYRN-----------RYWPAEYLIDATGTVRHIKFGEG  185 (352)
T ss_dssp             SSGGGGCHHHHHHHHHH---H----TCCSCEEECTTSHHHHHTTC-----------CEESEEEEECTTSBEEEEEESBC
T ss_pred             cccccCCHHHHHHHHHH---c----CCCccEEeCCcHHHHHHcCC-----------CccCEEEEEeCCCeEEEEEcCCC
Confidence                  46677777764   3    78999999999999999998           23467899999999987766643

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.83  E-value=3e-20  Score=152.33  Aligned_cols=114  Identities=13%  Similarity=0.102  Sum_probs=104.2

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-HHhHHHHhc
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVN  323 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~~~~~~~~~  323 (384)
                      ..+|+|+++   |.+|+.+++++++||+++|+|| ++||++|..+++.|++++++++  ++.+++|+.|+ ++..++|++
T Consensus         2 ~~~p~~~l~---~~~g~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~   75 (136)
T 1lu4_A            2 DERLQFTAT---TLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVS   75 (136)
T ss_dssp             GGGGCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCeEee---cCCCCeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHH
Confidence            357999998   5599999999999999999999 9999999999999999999986  89999999976 788888888


Q ss_pred             CccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        324 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++       +++|+++.|.+..+.+.||+      ...|+++++|++|+|+ .+.
T Consensus        76 ~~-------~~~~~~~~d~~~~~~~~~~i------~~~P~~~lid~~G~i~-~~~  116 (136)
T 1lu4_A           76 KY-------NLNFTNLNDADGVIWARYNV------PWQPAFVFYRADGTST-FVN  116 (136)
T ss_dssp             HH-------TCCSEEEECTTSHHHHHTTC------CSSSEEEEECTTSCEE-EEC
T ss_pred             Hc-------CCCceEEECCchhHHHhcCC------CCCCEEEEECCCCcEE-EEE
Confidence            76       88999999999999999999      6889999999999999 555

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.82  E-value=4.5e-21  Score=161.16  Aligned_cols=121  Identities=20%  Similarity=0.222  Sum_probs=106.5

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC---CCHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DSHF  126 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~---d~~~  126 (384)
                      .+.+|+++|+|++.+.   +|+.+++++++ |++||+|| ++|||+|+.+++.|+++++++   ++++++|+.   |+.+
T Consensus         4 ~l~~g~~~p~f~l~~~---~g~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~   75 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDP---KGQPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTRE   75 (154)
T ss_dssp             CCCSBEECCCCCEECT---TSCEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHH
T ss_pred             cCCCCCcCCceEEECC---CCCEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHH
Confidence            5679999999999877   99999999999 99999999 999999999999999999999   899999999   6677


Q ss_pred             hHHhhccCccccCCCCccceeEEee---CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D---~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..++|.+..       +++||++.|   ...++++.||+.           ..|++|+||++|+|+....|..
T Consensus        76 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~~  130 (154)
T 3ia1_A           76 VVLEYMKTY-------PRFIPLLASDRDRPHEVAARFKVL-----------GQPWTFVVDREGKVVALFAGRA  130 (154)
T ss_dssp             HHHHHHTTC-------TTEEECBCCSSCCHHHHHTTSSBC-----------SSCEEEEECTTSEEEEEEESBC
T ss_pred             HHHHHHHHc-------CCCcccccccccchHHHHHHhCCC-----------cccEEEEECCCCCEEEEEcCCC
Confidence            788888753       789999998   668899999982           3467899999999987776654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.82  E-value=4.6e-20  Score=150.95  Aligned_cols=115  Identities=12%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             CCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-HHhHHHHh
Q psy17178        244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWV  322 (384)
Q Consensus       244 g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~~~~~~~~  322 (384)
                      |..+|+|+++   +.+|+.+++++++||+++|+|| ++||+.|..+++.|++++++++  ++.+++|+.|+ .+..++|.
T Consensus         2 ~~~~p~~~~~---~~~g~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~   75 (136)
T 1zzo_A            2 VPAQLQFSAK---TLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFV   75 (136)
T ss_dssp             CCGGGCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHH
T ss_pred             CCCCCCcccc---cCCCCEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHH
Confidence            5679999998   4599999999999999999999 9999999999999999999986  89999999874 77888888


Q ss_pred             cCccccCCCCCc-ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        323 NTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       323 ~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +++       ++ +|+++.|.+..+.+.||+      ..+|+++++|++|+|+ .+.
T Consensus        76 ~~~-------~~~~~~~~~d~~~~~~~~~~i------~~~P~~~~id~~g~i~-~~~  118 (136)
T 1zzo_A           76 NKY-------PVKTFTQLADTDGSVWANFGV------TQQPAYAFVDPHGNVD-VVR  118 (136)
T ss_dssp             HHT-------TCTTSEEEECTTCHHHHHTTC------CSSSEEEEECTTCCEE-EEE
T ss_pred             HHc-------CCCceEEEEcCCcHHHHHcCC------CCCceEEEECCCCCEE-EEe
Confidence            876       77 999999999999999999      6899999999999998 554

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.82  E-value=1.7e-20  Score=156.42  Aligned_cols=120  Identities=18%  Similarity=0.154  Sum_probs=102.6

Q ss_pred             CCCCCCCC-ceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCC-CHHhH
Q psy17178        242 FVSKPAPF-WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD-SHFTH  318 (384)
Q Consensus       242 ~~g~~~P~-f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d-~~~~~  318 (384)
                      .+|+.+|+ |++.+   .+| .+++++++||++||+|| ++||++|+.++|.|+++++++++ .++.|++|+.| +.+..
T Consensus         3 ~~~~~~P~~f~l~~---~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~   77 (146)
T 1o8x_A            3 GLDKYLPGIEKLRR---GDG-EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGF   77 (146)
T ss_dssp             CGGGTSTTCCEEEE---TTE-EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred             chHhhCCCceEEEc---CCC-CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHH
Confidence            35788999 99985   499 99999999999999999 99999999999999999999984 68999999998 46778


Q ss_pred             HHHhcCccccCCCCCcceeEEe-cCchHHHHHhCceecCCCceeeEEEEEe-CCceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLDKYCLEC-YKMVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~~~~~~p~~~lId-~~G~i~~~~~  378 (384)
                      ++|++++.      ...+++.. |....+.+.||+      ..+|+++||| ++|+|++.+.
T Consensus        78 ~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v------~~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A           78 AGYFAKMP------WLAVPFAQSEAVQKLSKHFNV------ESIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             HHHHTTCS------SEECCGGGHHHHHHHHHHTTC------CSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHHCC------ceeeccchhhHHHHHHHHhCC------CCCCEEEEEECCCCeEEEecc
Confidence            88887651      24566554 556889999999      6899999999 9999998654

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.82  E-value=1.7e-20  Score=156.06  Aligned_cols=121  Identities=15%  Similarity=0.093  Sum_probs=101.3

Q ss_pred             CCCCCCc-cEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC-HHhHH
Q psy17178         53 LSKPAPF-WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHL  129 (384)
Q Consensus        53 ~G~~aP~-f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~-~~~~~  129 (384)
                      +|+.+|+ |++.+.   +|+++++++++||++||+|| ++|||+|+.++|.|+++++++++ .++++++|+.|. .+..+
T Consensus         3 ~~~~~P~~f~l~~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~   78 (144)
T 1i5g_A            3 LKKFFPYSTNVLKG---AAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK   78 (144)
T ss_dssp             TTTSCSSCSEEEET---TEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred             hhhhCCCceEEEcC---CCCEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence            6899999 999887   99999999999999999999 89999999999999999999985 689999999984 67778


Q ss_pred             hhccCccccCCCCccceeEEe-eCcchhHHhhcCcccCCCCcccceeEEEEEEEe-cCCCcccccce
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYA-LTSPVNGYAGG  194 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~-D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid-~~G~v~~~~~g  194 (384)
                      +|.+.+      +-..+|++. |...++++.||+.           ..|+++++| ++|+|+....+
T Consensus        79 ~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~~G~i~~~~~~  128 (144)
T 1i5g_A           79 DYYAKM------PWLALPFEDRKGMEFLTTGFDVK-----------SIPTLVGVEADSGNIITTQAR  128 (144)
T ss_dssp             HHHTTC------SSEECCTTCHHHHHHHHHHTTCC-----------SSSEEEEEETTTCCEEESCHH
T ss_pred             HHHHhC------CccccccCchHHHHHHHHHcCCC-----------CCCEEEEEECCCCcEEeccch
Confidence            887753      123566555 6668899999982           235788999 99999865543

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.81  E-value=5.2e-20  Score=150.57  Aligned_cols=118  Identities=19%  Similarity=0.236  Sum_probs=100.4

Q ss_pred             CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe------CCCHHhHH
Q psy17178         56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS------VDSHFTHL  129 (384)
Q Consensus        56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs------~d~~~~~~  129 (384)
                      ++|+|++.+.   +|+++++++++||++||+|| ++|||+|+.+++.|+++++++ ..++.+++|+      .++.+..+
T Consensus         1 ~~p~f~l~~~---~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~~   75 (138)
T 4evm_A            1 EVADFELMGV---DGKTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGHKGEQSEADFK   75 (138)
T ss_dssp             CCCCCEEEBT---TSCEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTSTTCCCHHHHH
T ss_pred             CCCcceeECC---CCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCCchhhHHHHH
Confidence            5899999877   99999999999999999999 999999999999999999984 4579999993      34567777


Q ss_pred             hhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        130 AWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|.+..       ++ +||++.|.++++++.||+.           ..|+++++|++|+|+....|..
T Consensus        76 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~g~~  125 (138)
T 4evm_A           76 NWYKGL-------DYKNLPVLVDPSGKLLETYGVR-----------SYPTQAFIDKEGKLVKTHPGFM  125 (138)
T ss_dssp             HHHTTC-------CCTTCCEEECTTCHHHHHTTCC-----------SSSEEEEECTTCCEEEEEESCC
T ss_pred             HHHhhc-------CCCCeeEEECcchHHHHHcCcc-----------cCCeEEEECCCCcEEEeecCCC
Confidence            777643       66 8999999999999999982           2357889999999987766654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.81  E-value=5.7e-20  Score=150.39  Aligned_cols=119  Identities=13%  Similarity=0.155  Sum_probs=103.5

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhh
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAW  131 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~  131 (384)
                      +|.++|+|++.+.   +|+.+++++++||+++|.|| ++|||+|+.+++.|++++++++  ++.+++|+.|+ .+..++|
T Consensus         1 ~~~~~p~~~~~~~---~g~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~   74 (136)
T 1zzo_A            1 TVPAQLQFSAKTL---DGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEF   74 (136)
T ss_dssp             CCCGGGCCEEEBT---TSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHH
T ss_pred             CCCCCCCcccccC---CCCEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHH
Confidence            4678999999887   99999999999999999999 9999999999999999999986  89999999876 6777777


Q ss_pred             ccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        132 VNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       132 ~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+..       ++ +||++.|.+.++++.||+.           ..|+++++|++|+|+ ...|..
T Consensus        75 ~~~~-------~~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~~id~~g~i~-~~~g~~  121 (136)
T 1zzo_A           75 VNKY-------PVKTFTQLADTDGSVWANFGVT-----------QQPAYAFVDPHGNVD-VVRGRM  121 (136)
T ss_dssp             HHHT-------TCTTSEEEECTTCHHHHHTTCC-----------SSSEEEEECTTCCEE-EEESCC
T ss_pred             HHHc-------CCCceEEEEcCCcHHHHHcCCC-----------CCceEEEECCCCCEE-EEecCC
Confidence            7643       67 8999999999999999982           235788999999997 555543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.81  E-value=5.3e-20  Score=150.81  Aligned_cols=114  Identities=15%  Similarity=0.178  Sum_probs=101.2

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhcc
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVN  133 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~  133 (384)
                      .++|+|++.+.   +|+.+++++++||+++|.|| ++|||+|+.+++.|++++++++  ++.+++|+.|+ .+..++|.+
T Consensus         2 ~~~p~~~l~~~---~g~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~   75 (136)
T 1lu4_A            2 DERLQFTATTL---SGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVS   75 (136)
T ss_dssp             GGGGCCEEEBT---TSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCeEeecC---CCCeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHH
Confidence            35899999877   99999999999999999999 9999999999999999999986  89999999987 778888887


Q ss_pred             CccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        134 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       134 ~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      ..       +++||++.|.+.++++.||+.           ..|+++++|++|+|+ ...
T Consensus        76 ~~-------~~~~~~~~d~~~~~~~~~~i~-----------~~P~~~lid~~G~i~-~~~  116 (136)
T 1lu4_A           76 KY-------NLNFTNLNDADGVIWARYNVP-----------WQPAFVFYRADGTST-FVN  116 (136)
T ss_dssp             HH-------TCCSEEEECTTSHHHHHTTCC-----------SSSEEEEECTTSCEE-EEC
T ss_pred             Hc-------CCCceEEECCchhHHHhcCCC-----------CCCEEEEECCCCcEE-EEE
Confidence            43       789999999999999999982           235788999999998 555

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.80  E-value=5.4e-20  Score=152.73  Aligned_cols=120  Identities=18%  Similarity=0.143  Sum_probs=101.1

Q ss_pred             CCCCCCCCc-eeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCC-HHhH
Q psy17178        242 FVSKPAPFW-QGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTH  318 (384)
Q Consensus       242 ~~g~~~P~f-~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~-~~~~  318 (384)
                      .+|+.+|+| ++.   |.+| .+++++++||++||+|| ++||++|+.++|.|++++++++ +.++.+++|+.|. .+..
T Consensus         3 ~~g~~~p~~~~l~---~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~   77 (144)
T 1o73_A            3 GLAKYLPGATNLL---SKSG-EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDF   77 (144)
T ss_dssp             GGGGTSCTTCCBB---CTTS-CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHH
T ss_pred             chhhhCccceEee---cCCC-cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHH
Confidence            468899997 988   5599 99999999999999999 9999999999999999999998 4689999999985 5677


Q ss_pred             HHHhcCccccCCCCCcceeEEe-cCchHHHHHhCceecCCCceeeEEEEEe-CCceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLDKYCLEC-YKMVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~~~~~~p~~~lId-~~G~i~~~~~  378 (384)
                      ++|++++.      ...+++.. |....+.+.||+      ..+|+++||| ++|+|++.+.
T Consensus        78 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v------~~~Pt~~lid~~~G~i~~~~~  127 (144)
T 1o73_A           78 HDYYGKMP------WLALPFDQRSTVSELGKTFGV------ESIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             HHHHTTCS------SEECCTTCHHHHHHHHHHHTC------CSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHhCC------ceEeeccchhHHHHHHHHcCC------CCCCEEEEEECCCCeEEecch
Confidence            77877641      23455443 556789999999      6899999999 9999998653

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.80  E-value=2.7e-19  Score=152.70  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=104.1

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~  318 (384)
                      ..+|+.+|+|+++++ +.+|+.++++++ +||++||+|| ++|||+|+.++|.|++++++    ++.+++|+.| +++..
T Consensus        22 ~~~G~~~P~f~l~~~-~~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~~   95 (168)
T 2b1k_A           22 ALIGKPVPKFRLESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKA   95 (168)
T ss_dssp             TTTTSBCCCCEEEES-SSTTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHH
T ss_pred             cccCCcCCCeEeecc-cCCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHHH
Confidence            468999999999844 338999999985 9999999999 99999999999999998864    7999999975 56778


Q ss_pred             HHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+.+       +++|+ ++.|.+..+++.||+      ..+|++|+||++|+|++.+..
T Consensus        96 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  144 (168)
T 2b1k_A           96 ISWLKEL-------GNPYALSLFDGDGMLGLDLGV------YGAPETFLIDGNGIIRYRHAG  144 (168)
T ss_dssp             HHHHHHH-------CCCCSEEEEETTCHHHHHHTC------CSSSEEEEECTTSBEEEEEES
T ss_pred             HHHHHHc-------CCCCceeeECcchHHHHHcCc------cccCEEEEECCCCeEEEEEeC
Confidence            8888776       78888 578989999999999      678999999999999997763

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.80  E-value=1.7e-20  Score=160.26  Aligned_cols=120  Identities=18%  Similarity=0.102  Sum_probs=101.6

Q ss_pred             CCCCCCCCc-eeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCC-HHhH
Q psy17178        242 FVSKPAPFW-QGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTH  318 (384)
Q Consensus       242 ~~g~~~P~f-~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~-~~~~  318 (384)
                      .+|+.+|+| +++   |.+| .+++++++||++||+|| ++||++|+.++|.|++++++|++ .++.|++|+.|. .+..
T Consensus        23 ~vG~~~P~f~~l~---~~~g-~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~   97 (165)
T 3s9f_A           23 GVAKHLGEALKLR---KQAD-TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDF   97 (165)
T ss_dssp             HHHHHHHHTSCEE---ETTE-EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred             hhcccCCcceeee---cCCC-cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHH
Confidence            578899999 888   4599 99999999999999999 99999999999999999999986 689999999985 4677


Q ss_pred             HHHhcCccccCCCCCcceeEEecCc-hHHHHHhCceecCCCceeeEEEEEeCC-ceEEEEEe
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLT-HKISLDYGVYLSDQGHTLDKYCLECYK-MVIVYWFE  378 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~~~~  378 (384)
                      ++|+++..      ...+++..+.. ..+.+.|++      ..+|++||||++ |+|++...
T Consensus        98 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v------~~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A           98 NAYYAKMP------WLSIPFANRNIVEALTKKYSV------ESIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             HHHHTTCS------SEECCTTCHHHHHHHHHHTTC------CSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHhCC------CcccccCchhHHHHHHHHcCC------CCCCEEEEEeCCCCEEEeccc
Confidence            78877641      23555554434 789999999      689999999998 99998544

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.80  E-value=1.3e-19  Score=152.34  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             CCCCCCCCCceeeeEEcCcc--------eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        241 PFVSKPAPFWQGTAVVDGQL--------KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g--------~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      +.+|+.+|+|+++++   +|        +.+++++++||++||+|| ++||++|..++|.|++++++   .++.+++|+.
T Consensus         8 ~~~g~~~p~f~l~~~---~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~   80 (156)
T 1kng_A            8 ALIGRPAPQTALPPL---EGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINY   80 (156)
T ss_dssp             ----CBCCCCCBCCC---TTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEE
T ss_pred             HHhCCCCCCceeeec---cCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEEC
Confidence            468999999999855   77        999999999999999999 99999999999999999875   4599999997


Q ss_pred             C-CHHhHHHHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        313 D-SHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       313 d-~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      | +++..++|++.+       +++|+ ++.|....+++.||+      ..+|++|+||++|+|++.+..
T Consensus        81 ~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~~id~~G~i~~~~~g  136 (156)
T 1kng_A           81 KDAADNARRFLGRY-------GNPFGRVGVDANGRASIEWGV------YGVPETFVVGREGTIVYKLVG  136 (156)
T ss_dssp             SCCHHHHHHHHHHH-------CCCCSEEEEETTSHHHHHTTC------CSSCEEEEECTTSBEEEEEES
T ss_pred             CCCHHHHHHHHHHc-------CCCCceeeeCchhHHHHhcCc------CccCeEEEEcCCCCEEEEEeC
Confidence            5 567888888876       78899 888999999999999      688999999999999997753

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.80  E-value=5.1e-20  Score=153.55  Aligned_cols=122  Identities=18%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             cCCCCCCc-cEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC-HHhH
Q psy17178         52 NLSKPAPF-WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTH  128 (384)
Q Consensus        52 ~~G~~aP~-f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~-~~~~  128 (384)
                      .+|+.+|+ |++.+.   +| .+++++++||++||+|| ++|||+|+.++|.|+++++++++ .++++++|+.|. .+..
T Consensus         3 ~~~~~~P~~f~l~~~---~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~   77 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRG---DG-EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGF   77 (146)
T ss_dssp             CGGGTSTTCCEEEET---TE-EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred             chHhhCCCceEEEcC---CC-CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHH
Confidence            46889999 999887   99 99999999999999999 89999999999999999999984 689999999985 6677


Q ss_pred             HhhccCccccCCCCccceeEEe-eCcchhHHhhcCcccCCCCcccceeEEEEEEEe-cCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYA-LTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~-D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid-~~G~v~~~~~g~  195 (384)
                      ++|.+..      +...+|+.. |...++++.||+        .+   .|+++++| ++|+|+....+.
T Consensus        78 ~~~~~~~------~~~~~~~~~~d~~~~~~~~~~v--------~~---~Pt~~lid~~~G~i~~~~~~~  129 (146)
T 1o8x_A           78 AGYFAKM------PWLAVPFAQSEAVQKLSKHFNV--------ES---IPTLIGVDADSGDVVTTRARA  129 (146)
T ss_dssp             HHHHTTC------SSEECCGGGHHHHHHHHHHTTC--------CS---SSEEEEEETTTCCEEESCHHH
T ss_pred             HHHHHHC------CceeeccchhhHHHHHHHHhCC--------CC---CCEEEEEECCCCeEEEecchh
Confidence            7777743      123566555 666889999998        22   35788999 999998665443

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.79  E-value=1.3e-19  Score=154.73  Aligned_cols=124  Identities=19%  Similarity=0.262  Sum_probs=103.1

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-CHH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHF  126 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-~~~  126 (384)
                      ..+.+|+++|+|++++. +.+|+.++++++ +||++||+|| ++|||+|+.++|.|++++++    ++.+++|+.| +.+
T Consensus        20 ~~~~~G~~~P~f~l~~~-~~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~   93 (168)
T 2b1k_A           20 ESALIGKPVPKFRLESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQ   93 (168)
T ss_dssp             CCTTTTSBCCCCEEEES-SSTTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHH
T ss_pred             cccccCCcCCCeEeecc-cCCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChH
Confidence            35579999999999764 336889999986 8999999999 99999999999999988764    8999999975 467


Q ss_pred             hHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..++|.+..       +++|| ++.|.+.++++.||+.        +   .|++|+||++|+|+....|..
T Consensus        94 ~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~--------~---~P~~~lid~~G~i~~~~~g~~  146 (168)
T 2b1k_A           94 KAISWLKEL-------GNPYALSLFDGDGMLGLDLGVY--------G---APETFLIDGNGIIRYRHAGDL  146 (168)
T ss_dssp             HHHHHHHHH-------CCCCSEEEEETTCHHHHHHTCC--------S---SSEEEEECTTSBEEEEEESCC
T ss_pred             HHHHHHHHc-------CCCCceeeECcchHHHHHcCcc--------c---cCEEEEECCCCeEEEEEeCCC
Confidence            777887643       78888 6789999999999982        2   356889999999987766654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.79  E-value=6.9e-20  Score=155.43  Aligned_cols=118  Identities=8%  Similarity=0.106  Sum_probs=101.3

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC------CHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------SHF  316 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d------~~~  316 (384)
                      +|+.+|  +++   |.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|++.++.|++|+.|      +.+
T Consensus        16 ~~~~~p--~l~---~~~g~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~   89 (164)
T 2h30_A           16 VPHTMS--TMK---TADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDG   89 (164)
T ss_dssp             HHHHHT--TCE---ETTSSBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTT
T ss_pred             cCCcCC--ccC---CCCCCEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHH
Confidence            344455  555   5599999999999999999999 9999999999999999999998899999999974      345


Q ss_pred             hHHHHhcCccccCCCCCcc-eeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ..++|.+.+       +++ +++..|.+..+++.||+      ..+|++||||++|++++.+..
T Consensus        90 ~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~g  140 (164)
T 2h30_A           90 EFQKWYAGL-------NYPKLPVVTDNGGTIAQNLNI------SVYPSWALIGKDGDVQRIVKG  140 (164)
T ss_dssp             HHHHHHTTS-------CCTTSCEEECTTCHHHHHTTC------CSSSEEEEECTTSCEEEEEES
T ss_pred             HHHHHHHhC-------CCCcceEEEcCchHHHHHcCC------CccceEEEECCCCcEEEEEcC
Confidence            667776654       566 88999999999999999      689999999999999997753

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.78  E-value=2e-20  Score=159.79  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             ccccCCCCCCcc-EEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC-H
Q psy17178         49 YSKNLSKPAPFW-QGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-H  125 (384)
Q Consensus        49 ~~~~~G~~aP~f-~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~-~  125 (384)
                      .+..+|+++|+| ++.+.   +| +++|++++||++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .
T Consensus        20 ~~~~vG~~~P~f~~l~~~---~g-~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~   94 (165)
T 3s9f_A           20 HMSGVAKHLGEALKLRKQ---AD-TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEE   94 (165)
T ss_dssp             --CHHHHHHHHTSCEEET---TE-EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSH
T ss_pred             hhhhhcccCCcceeeecC---CC-cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCH
Confidence            345689999999 99777   89 99999999999999999 99999999999999999999986 689999999986 4


Q ss_pred             HhHHhhccCccccCCCCccceeEEeeCc-chhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcccccce
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIPLLSDLT-HKISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNGYAGG  194 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~-~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~~~~g  194 (384)
                      +..++|.+..      +-..+|+..+.. .++++.||+.           ..|+++|||++ |+|+....+
T Consensus        95 ~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~-----------~~Pt~~lid~~~G~iv~~~~~  148 (165)
T 3s9f_A           95 DDFNAYYAKM------PWLSIPFANRNIVEALTKKYSVE-----------SIPTLIGLNADTGDTVTTRAR  148 (165)
T ss_dssp             HHHHHHHTTC------SSEECCTTCHHHHHHHHHHTTCC-----------SSSEEEEEETTTCCEEESCHH
T ss_pred             HHHHHHHHhC------CCcccccCchhHHHHHHHHcCCC-----------CCCEEEEEeCCCCEEEecccH
Confidence            6677777642      123555555444 7899999982           24578999998 999866543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.78  E-value=1.2e-19  Score=152.63  Aligned_cols=122  Identities=14%  Similarity=0.172  Sum_probs=100.3

Q ss_pred             cccCCCCCCccEEEeeecCcc--------ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQL--------KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  121 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g--------~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs  121 (384)
                      .+.+|+++|+|++++.   +|        +.+++++++||++||+|| ++|||+|..++|.|++++++   .++.+++|+
T Consensus         7 ~~~~g~~~p~f~l~~~---~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~   79 (156)
T 1kng_A            7 SALIGRPAPQTALPPL---EGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGIN   79 (156)
T ss_dssp             -----CBCCCCCBCCC---TTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEE
T ss_pred             hHHhCCCCCCceeeec---cCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEE
Confidence            4579999999999887   77        899999999999999999 99999999999999998875   459999999


Q ss_pred             CC-CHHhHHhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        122 VD-SHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       122 ~d-~~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .| +.+..++|.+..       +++|| ++.|...++++.||+.           ..|++|++|++|+|+....|..
T Consensus        80 ~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~~id~~G~i~~~~~g~~  138 (156)
T 1kng_A           80 YKDAADNARRFLGRY-------GNPFGRVGVDANGRASIEWGVY-----------GVPETFVVGREGTIVYKLVGPI  138 (156)
T ss_dssp             ESCCHHHHHHHHHHH-------CCCCSEEEEETTSHHHHHTTCC-----------SSCEEEEECTTSBEEEEEESCC
T ss_pred             CCCCHHHHHHHHHHc-------CCCCceeeeCchhHHHHhcCcC-----------ccCeEEEEcCCCCEEEEEeCCC
Confidence            75 467777887743       78999 8899999999999982           2357899999999987666654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.77  E-value=1.2e-19  Score=150.54  Aligned_cols=122  Identities=19%  Similarity=0.195  Sum_probs=99.2

Q ss_pred             cCCCCCCcc-EEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCCC-HHhH
Q psy17178         52 NLSKPAPFW-QGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTH  128 (384)
Q Consensus        52 ~~G~~aP~f-~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d~-~~~~  128 (384)
                      .+|+.+|+| ++.+.   +| .+++++++||++||+|| ++|||+|+.++|.|++++++++ +.++++++|+.|. .+..
T Consensus         3 ~~g~~~p~~~~l~~~---~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~   77 (144)
T 1o73_A            3 GLAKYLPGATNLLSK---SG-EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDF   77 (144)
T ss_dssp             GGGGTSCTTCCBBCT---TS-CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHH
T ss_pred             chhhhCccceEeecC---CC-cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHH
Confidence            578999998 99776   99 99999999999999999 9999999999999999999998 4689999999986 5566


Q ss_pred             HhhccCccccCCCCccceeEEe-eCcchhHHhhcCcccCCCCcccceeEEEEEEEe-cCCCccccccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYA-LTSPVNGYAGGA  195 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~-D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid-~~G~v~~~~~g~  195 (384)
                      ++|.+.+      +...+|+.. |...++++.||+.           ..|+++++| ++|+|+....+.
T Consensus        78 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~-----------~~Pt~~lid~~~G~i~~~~~~~  129 (144)
T 1o73_A           78 HDYYGKM------PWLALPFDQRSTVSELGKTFGVE-----------SIPTLITINADTGAIIGTQART  129 (144)
T ss_dssp             HHHHTTC------SSEECCTTCHHHHHHHHHHHTCC-----------SSSEEEEEETTTCCEEESCHHH
T ss_pred             HHHHHhC------CceEeeccchhHHHHHHHHcCCC-----------CCCEEEEEECCCCeEEecchhh
Confidence            7777642      123455544 5567899999982           235788999 899998765443

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.64  E-value=2.4e-20  Score=154.48  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=99.3

Q ss_pred             CCCCCceeeeEEcCcceeeeccc-cCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCC-CHHhHH
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSD-YYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVD-SHFTHL  319 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d-~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d-~~~~~~  319 (384)
                      +.+|+|+++++   +|+.+++++ ++|| +++|+|| ++|||+|+.++|.|+++++++++  .++.+++|+.| +++..+
T Consensus         2 ~~~p~~~l~~~---~g~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~   77 (143)
T 2lus_A            2 EFIQGIKLVKK---NRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMF   77 (143)
Confidence            45899999855   999999999 9999 9999999 99999999999999999999953  57999999998 456677


Q ss_pred             HHhcCccccCCCCCcce---eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        320 AWVNTPRKEGGLGKLKI---PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++++       +++|   ++..|..+.+.+.||+      ..+|+++|||++|+|++.+..
T Consensus        78 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           78 QYMMES-------HGDWLAIPYRSGPASNVTAKYGI------TGIPALVIVKKDGTLISMNGR  127 (143)
Confidence            777665       4454   4455666889999999      689999999999999986543

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.76  E-value=1.7e-19  Score=153.06  Aligned_cols=120  Identities=8%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC------HH
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------HF  126 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~------~~  126 (384)
                      +|+.+|  ++.+.   +|+++++++++||++||+|| ++|||+|+.++|.|++++++|+..++++++|+.|.      .+
T Consensus        16 ~~~~~p--~l~~~---~g~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~   89 (164)
T 2h30_A           16 VPHTMS--TMKTA---DNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDG   89 (164)
T ss_dssp             HHHHHT--TCEET---TSSBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTT
T ss_pred             cCCcCC--ccCCC---CCCEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHH
Confidence            445555  56566   89999999999999999999 99999999999999999999988999999999753      34


Q ss_pred             hHHhhccCccccCCCCccc-eeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~-~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..++|.+.   +    +++ +++..|...++++.||+.        +   .|+++++|++|+++....|..
T Consensus        90 ~~~~~~~~---~----~~~~~~~~~d~~~~~~~~~~v~--------~---~P~~~lid~~G~i~~~~~g~~  142 (164)
T 2h30_A           90 EFQKWYAG---L----NYPKLPVVTDNGGTIAQNLNIS--------V---YPSWALIGKDGDVQRIVKGSI  142 (164)
T ss_dssp             HHHHHHTT---S----CCTTSCEEECTTCHHHHHTTCC--------S---SSEEEEECTTSCEEEEEESCC
T ss_pred             HHHHHHHh---C----CCCcceEEEcCchHHHHHcCCC--------c---cceEEEECCCCcEEEEEcCCC
Confidence            45555543   2    566 899999999999999982        2   357889999999987766644

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.58  E-value=2.3e-19  Score=148.58  Aligned_cols=116  Identities=13%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             CCCCccEEEeeecCccceEEccc-cCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHh--CCcEEEEEeCCC-HHhHH
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSD-YYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDS-HFTHL  129 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~-~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~d~-~~~~~  129 (384)
                      +.+|+|++++.   +|+++++++ ++|| +++|+|| ++|||+|+.++|.|+++++++++  .++.+++|+.|. ++..+
T Consensus         2 ~~~p~~~l~~~---~g~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~   77 (143)
T 2lus_A            2 EFIQGIKLVKK---NRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMF   77 (143)
Confidence            45799999887   999999999 9999 9999999 89999999999999999999953  589999999985 45666


Q ss_pred             hhccCccccCCCCccce---eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        130 AWVNTPRKEGGLGKLKI---PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~---p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      +|.+..       +++|   ++..|..+++++.||+           ...|+++++|++|+|+...
T Consensus        78 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~  125 (143)
T 2lus_A           78 QYMMES-------HGDWLAIPYRSGPASNVTAKYGI-----------TGIPALVIVKKDGTLISMN  125 (143)
Confidence            666543       4554   4556666889999998           2356789999999998764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.68  E-value=1.4e-16  Score=143.77  Aligned_cols=185  Identities=11%  Similarity=0.110  Sum_probs=116.2

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC--cEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  155 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  155 (384)
                      .+||+++|+|| ++||++|+..+|.+.++.+++++.+  +.++.|..|.                            ..+
T Consensus        30 ~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~   80 (241)
T 3idv_A           30 ADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS----------------------------ASV   80 (241)
T ss_dssp             TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT----------------------------CHH
T ss_pred             hcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC----------------------------CHH
Confidence            36899999999 9999999999999999999998765  6666665532                            235


Q ss_pred             hHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhhh
Q psy17178        156 ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYH  235 (384)
Q Consensus       156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  235 (384)
                      +++.|||        ++++   ++++++ +|++.. ..|       .+.. .. +         . .  ++    .. ..
T Consensus        81 l~~~~~v--------~~~P---t~~~~~-~g~~~~-~~g-------~~~~-~~-l---------~-~--~i----~~-~~  121 (241)
T 3idv_A           81 LASRFDV--------SGYP---TIKILK-KGQAVD-YEG-------SRTQ-EE-I---------V-A--KV----RE-VS  121 (241)
T ss_dssp             HHHHTTC--------CSSS---EEEEEE-TTEEEE-CCS-------CSCH-HH-H---------H-H--HH----HH-HH
T ss_pred             HHHhcCC--------CcCC---EEEEEc-CCCccc-ccC-------cccH-HH-H---------H-H--HH----hh-cc
Confidence            7788888        3333   445554 565432 111       1110 00 0         0 0  00    00 00


Q ss_pred             ccccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCC
Q psy17178        236 ASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVD  313 (384)
Q Consensus       236 ~~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d  313 (384)
                      ....     ...|.. ...+   +++.+...--.+++++|+|| ++||++|+...|.+.++.+++++++  +.++.|+.+
T Consensus       122 ~~~~-----~~~~~~-~~~~---~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~  191 (241)
T 3idv_A          122 QPDW-----TPPPEV-TLVL---TKENFDEVVNDADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT  191 (241)
T ss_dssp             STTC-----CCCCCS-SEEC---CTTTHHHHHHHCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT
T ss_pred             Cccc-----cccccc-ceec---cHHHHHHhhccCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC
Confidence            0000     111111 1212   22222222225789999999 9999999999999999999997643  667766655


Q ss_pred             CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        314 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .                            +..+.+.||+      ..+|+.++++ +|+.+.
T Consensus       192 ~----------------------------~~~l~~~~~v------~~~Pt~~~~~-~g~~~~  218 (241)
T 3idv_A          192 A----------------------------ETDLAKRFDV------SGYPTLKIFR-KGRPYD  218 (241)
T ss_dssp             T----------------------------CHHHHHHTTC------CSSSEEEEEE-TTEEEE
T ss_pred             C----------------------------CHHHHHHcCC------cccCEEEEEE-CCeEEE
Confidence            2                            2347788998      6789888887 677765

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.58  E-value=5.3e-15  Score=127.11  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=105.7

Q ss_pred             ccccCCCCCCc--cEEEeee----c------CccceEEcccc--CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHH-Hh
Q psy17178         49 YSKNLSKPAPF--WQGTAVV----D------GQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEF-HQ  112 (384)
Q Consensus        49 ~~~~~G~~aP~--f~l~~~~----~------~~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~-~~  112 (384)
                      +...+|+++|.  +++..+.    +      +.-+++++++.  +||.|||+++|++++|.|.. ++|.+.+.++++ ++
T Consensus        24 ~~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~  103 (199)
T 4h86_A           24 MSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKE  103 (199)
T ss_dssp             BCTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHH
T ss_pred             hHHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHh
Confidence            45569999994  6554331    1      22357888887  79999999999999999987 699999999876 78


Q ss_pred             CCc-EEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        113 INT-EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       113 ~~v-~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      +|+ +|++||+|++..+++|.+...-   .+...+++++|++++++++||+.....+  .|....|+++||| ||+|...
T Consensus       104 kGvd~I~ciSVND~FVm~AW~k~~~~---~~~~~i~~laD~~~eftkalGl~~~~~~--gg~RS~Rya~IVd-DGvV~~~  177 (199)
T 4h86_A          104 KEVDQVIVVTVDNPFANQAWAKSLGV---KDTTHIKFASDPGCAFTKSIGFELAVGD--GVYWSGRWAMVVE-NGIVTYA  177 (199)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHTTC---CCCSSEEEEECGGGHHHHHTTCEEEEET--TEEEECSEEEEEE-TTEEEEE
T ss_pred             cCCcEEEEEEcCCHHHHHHHHHHhcc---cccccccccCCcchHHHHhcCceeecCC--CcceeeEEEEEEE-CCEEEEE
Confidence            888 7999999999999999885411   1245799999999999999998655421  1223457889998 9999754

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.41  E-value=9e-13  Score=117.56  Aligned_cols=75  Identities=12%  Similarity=-0.016  Sum_probs=58.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh---CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .+++++|+|| ++||++|+.+.|.++++++++++   .++.++.|+.|.                            ...
T Consensus       133 ~~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~----------------------------~~~  183 (226)
T 1a8l_A          133 DQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE----------------------------YPE  183 (226)
T ss_dssp             CSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG----------------------------CHH
T ss_pred             CCCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc----------------------------CHH
Confidence            4555599999 99999999999999999999974   367887776551                            235


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+.||+      ..+|+++++ ++|+.+..+..
T Consensus       184 l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  210 (226)
T 1a8l_A          184 WADQYNV------MAVPKIVIQ-VNGEDRVEFEG  210 (226)
T ss_dssp             HHHHTTC------CSSCEEEEE-ETTEEEEEEES
T ss_pred             HHHhCCC------cccCeEEEE-eCCceeEEEcC
Confidence            6788998      678986655 69998876653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.38  E-value=6.3e-13  Score=107.36  Aligned_cols=97  Identities=9%  Similarity=-0.002  Sum_probs=77.5

Q ss_pred             CCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCc
Q psy17178        246 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  325 (384)
Q Consensus       246 ~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~  325 (384)
                      .+++++..++   +|........+||+++|+|| ++||++|..+.|.+++++++++ .++.++.|+.|            
T Consensus         5 ~~~~l~~~~~---~~~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------   67 (126)
T 2l57_A            5 GIKQINFQSI---NVVENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------   67 (126)
T ss_dssp             CSSCTTTTCC---SEESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT------------
T ss_pred             ccCCCCcccc---chhHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC------------
Confidence            4556665533   66655566678999999999 9999999999999999999886 67999999965            


Q ss_pred             cccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        326 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                                    .|.+..+.++||+      ..+|+++++|++|+++..+..
T Consensus        68 --------------~d~~~~~~~~~~v------~~~Pt~~~~~~~G~~~~~~~G  101 (126)
T 2l57_A           68 --------------EEKNIDLAYKYDA------NIVPTTVFLDKEGNKFYVHQG  101 (126)
T ss_dssp             --------------SSHHHHHHHHTTC------CSSSEEEEECTTCCEEEEEES
T ss_pred             --------------CCchHHHHHHcCC------cceeEEEEECCCCCEEEEecC
Confidence                          1223467788998      689999999999999987653

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.36  E-value=2.9e-13  Score=113.76  Aligned_cols=106  Identities=9%  Similarity=0.063  Sum_probs=82.0

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+...++|  .   + .|+.+++++.+||+++|+||.++||++|+.+.|.+   .++.+.+. .++.++.|+.+...  
T Consensus        25 ~~~~~~~~~--~---~-~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~--   95 (154)
T 2ju5_A           25 PIAAANLQW--E---S-YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN--   95 (154)
T ss_dssp             SSCCCCCCE--E---C-HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC--
T ss_pred             hcccCCCCC--C---C-HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc--
Confidence            345556666  2   1 57789999999999999999789999999999999   67755443 46888888876432  


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWF  377 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~  377 (384)
                                    +++++ +.|.+..+.+.|++      ..+|+++++|++|++++.+
T Consensus        96 --------------~~~~~-~~~~~~~l~~~~~v------~~~Pt~~~~d~~G~~~~~~  133 (154)
T 2ju5_A           96 --------------HQPEE-QRQKNQELKAQYKV------TGFPELVFIDAEGKQLARM  133 (154)
T ss_dssp             --------------CCCHH-HHHHHHHHHHHTTC------CSSSEEEEECTTCCEEEEE
T ss_pred             --------------CCChh-hHhhHHHHHHHcCC------CCCCEEEEEcCCCCEEEEe
Confidence                          12333 24666889999999      6899999999999999976

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.31  E-value=1.3e-11  Score=105.99  Aligned_cols=118  Identities=18%  Similarity=0.253  Sum_probs=96.2

Q ss_pred             ceeeecccc--CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHH-HhCCc-EEEEEeCCCHHhHHHHhcCccccCCCCCc
Q psy17178        260 LKEIKLSDY--YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEF-HQINT-EVVAASVDSHFTHLAWVNTPRKEGGLGKL  334 (384)
Q Consensus       260 g~~~~l~d~--~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~-~~~~v-~vv~Is~d~~~~~~~~~~~~~~~~~~~~~  334 (384)
                      -+++++++.  +||.|||++.|+.++|.|.. ++|.+.+.++++ +.+|+ +|+.||+|++..+.+|.+......   ..
T Consensus        57 P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ciSVND~FVm~AW~k~~~~~~---~~  133 (199)
T 4h86_A           57 PQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKD---TT  133 (199)
T ss_dssp             CEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEEEEESSCHHHHHHHHHHTTCCC---CS
T ss_pred             CeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHHHHHhcccc---cc
Confidence            356888875  79999999999999999986 699999998875 77887 799999999999999988763221   45


Q ss_pred             ceeEEecCchHHHHHhCceecCCC---ceeeEEEEEeCCceEEEEEecCC
Q psy17178        335 KIPLLSDLTHKISLDYGVYLSDQG---HTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       335 ~~~~~~D~~~~~~~~~gv~~~~~~---~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      .++++.|.++++++++|+.....+   ...+..+||| ||+|.+.+...+
T Consensus       134 ~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~  182 (199)
T 4h86_A          134 HIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETN  182 (199)
T ss_dssp             SEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSS
T ss_pred             cccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCC
Confidence            799999999999999998543222   2446678998 999999988754

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.30  E-value=5e-13  Score=109.43  Aligned_cols=97  Identities=11%  Similarity=-0.012  Sum_probs=76.0

Q ss_pred             CCCCCCCCce-eeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        242 FVSKPAPFWQ-GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       242 ~~g~~~P~f~-l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      ..+..+|+|. +.   +.++....+++.+||++||+|| ++||++|+.+.+.+   .++.++++  ++.++.|+.+... 
T Consensus         5 ~~~~~~~~f~~~~---~~~~~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~-   77 (134)
T 2fwh_A            5 AQTQTHLNFTQIK---TVDELNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND-   77 (134)
T ss_dssp             -----CCCCEECC---SHHHHHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC-
T ss_pred             cccccCCCcEEec---CHHHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc-
Confidence            4677888887 44   4467677888888999999999 99999999999988   88888774  5999999887421 


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                                             |....+.+.||+      ..+|+++++|++|+++
T Consensus        78 -----------------------~~~~~l~~~~~v------~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           78 -----------------------AQDVALLKHLNV------LGLPTILFFDGQGQEH  105 (134)
T ss_dssp             -----------------------HHHHHHHHHTTC------CSSSEEEEECTTSCBC
T ss_pred             -----------------------chHHHHHHHcCC------CCCCEEEEECCCCCEe
Confidence                                   234567888998      6899999999999997

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.28  E-value=4.5e-13  Score=109.70  Aligned_cols=105  Identities=13%  Similarity=0.123  Sum_probs=76.9

Q ss_pred             ccCCCCCCccE-EEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         51 KNLSKPAPFWQ-GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        51 ~~~G~~aP~f~-l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      ...|.++|+|+ +.+.   ++....+++.+||++||+|| ++|||+|+...+.+   .++.++++  ++.++.|+.+...
T Consensus         4 ~~~~~~~~~f~~~~~~---~~~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~   77 (134)
T 2fwh_A            4 TAQTQTHLNFTQIKTV---DELNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND   77 (134)
T ss_dssp             ------CCCCEECCSH---HHHHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC
T ss_pred             ccccccCCCcEEecCH---HHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc
Confidence            35788999998 4443   66677888888999999999 99999999999988   88888774  5899999876420


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc--cccceee
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN--GYAGGAL  196 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~--~~~~g~~  196 (384)
                                              |...++++.||+        .+   .|+++++|++|++.  ....|..
T Consensus        78 ------------------------~~~~~l~~~~~v--------~~---~Pt~~~~d~~G~~v~~~~~~G~~  114 (134)
T 2fwh_A           78 ------------------------AQDVALLKHLNV--------LG---LPTILFFDGQGQEHPQARVTGFM  114 (134)
T ss_dssp             ------------------------HHHHHHHHHTTC--------CS---SSEEEEECTTSCBCGGGCBCSCC
T ss_pred             ------------------------chHHHHHHHcCC--------CC---CCEEEEECCCCCEeeeeeeeecc
Confidence                                    234567888888        22   35778999999997  5566655

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.24  E-value=2.1e-11  Score=98.80  Aligned_cols=94  Identities=12%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             CCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhc
Q psy17178        244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN  323 (384)
Q Consensus       244 g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~  323 (384)
                      ...+|+++..     +++.++....+||+++|+|| ++||++|+.+.|.++++++++++ ++.++.|+.|.         
T Consensus        21 ~~~~~~~~~~-----~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~---------   84 (128)
T 3ul3_B           21 FKKVPRLQQN-----GSNIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK---------   84 (128)
T ss_dssp             -----CCCCC-----CCSSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG---------
T ss_pred             hccCCccccC-----CccHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC---------
Confidence            3457777633     67778888889999999999 99999999999999999999874 58888887542         


Q ss_pred             CccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        324 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                                         ...+.++|++      ..+|+++++ ++|+++..+..
T Consensus        85 -------------------~~~l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  114 (128)
T 3ul3_B           85 -------------------NESLARKFSV------KSLPTIILL-KNKTMLARKDH  114 (128)
T ss_dssp             -------------------CHHHHHHTTC------CSSSEEEEE-ETTEEEEEESS
T ss_pred             -------------------CHHHHHHcCC------CCcCEEEEE-ECCEEEEEecC
Confidence                               1367788998      689999999 69999886653

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.23  E-value=7.5e-13  Score=111.18  Aligned_cols=109  Identities=11%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+...++|  .+    .++.+++++.+||+++|+||+++|||+|+.++|.+   .++.+.+. .++.++.|+.+...  
T Consensus        25 ~~~~~~~~~--~~----~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~--   95 (154)
T 2ju5_A           25 PIAAANLQW--ES----YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN--   95 (154)
T ss_dssp             SSCCCCCCE--EC----HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC--
T ss_pred             hcccCCCCC--CC----HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc--
Confidence            466667777  22    46788899999999999999889999999999999   66655443 46888888876532  


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                                    +++++ +.|...++++.|++        .+   .|+++++|++|++.... |..
T Consensus        96 --------------~~~~~-~~~~~~~l~~~~~v--------~~---~Pt~~~~d~~G~~~~~~-G~~  136 (154)
T 2ju5_A           96 --------------HQPEE-QRQKNQELKAQYKV--------TG---FPELVFIDAEGKQLARM-GFE  136 (154)
T ss_dssp             --------------CCCHH-HHHHHHHHHHHTTC--------CS---SSEEEEECTTCCEEEEE-CCC
T ss_pred             --------------CCChh-hHhhHHHHHHHcCC--------CC---CCEEEEEcCCCCEEEEe-cCC
Confidence                          12344 35667889999998        33   35788999999998766 654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.23  E-value=2.8e-12  Score=103.56  Aligned_cols=99  Identities=9%  Similarity=0.008  Sum_probs=73.9

Q ss_pred             CCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCc
Q psy17178         56 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  135 (384)
Q Consensus        56 ~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~  135 (384)
                      .+++++..+.   +|........+||+++|.|| ++|||+|+...|.+.++.++++ .++.++.|+.|            
T Consensus         5 ~~~~l~~~~~---~~~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------   67 (126)
T 2l57_A            5 GIKQINFQSI---NVVENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------   67 (126)
T ss_dssp             CSSCTTTTCC---SEESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT------------
T ss_pred             ccCCCCcccc---chhHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC------------
Confidence            4556665544   55555556668899999999 9999999999999999999886 67999999865            


Q ss_pred             cccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        136 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       136 ~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                                    .|.+.++++.||+        .   ..|+++++|++|++.....|..
T Consensus        68 --------------~d~~~~~~~~~~v--------~---~~Pt~~~~~~~G~~~~~~~G~~  103 (126)
T 2l57_A           68 --------------EEKNIDLAYKYDA--------N---IVPTTVFLDKEGNKFYVHQGLM  103 (126)
T ss_dssp             --------------SSHHHHHHHHTTC--------C---SSSEEEEECTTCCEEEEEESCC
T ss_pred             --------------CCchHHHHHHcCC--------c---ceeEEEEECCCCCEEEEecCCC
Confidence                          1122457778888        2   2357789999999876555543

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.23  E-value=3.8e-13  Score=114.90  Aligned_cols=108  Identities=11%  Similarity=-0.022  Sum_probs=70.5

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      ++.+.++..+||+++|+|| ++||++|+.+.+.+   .++.+.+++ ++.++.|+.|....+.+..... ..  .....+
T Consensus        37 ~~~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~-~~--~~~~~~  111 (172)
T 3f9u_A           37 DLGMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIM-EN--GTERTL  111 (172)
T ss_dssp             HHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEE-ET--TEEEEE
T ss_pred             HHHHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhh-hc--chhhhh
Confidence            3456667778999999999 99999999864333   555555544 6999999998643221111100 00  001223


Q ss_pred             eEEecCchHH-HHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        337 PLLSDLTHKI-SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       337 ~~~~D~~~~~-~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ..+.|..+.+ .+.||+      ..+|+++++|++|+++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~v------~~~Pt~~lid~~G~~~~~~~  148 (172)
T 3f9u_A          112 RTVGDKWSYLQRVKFGA------NAQPFYVLIDNEGNPLNKSY  148 (172)
T ss_dssp             EEHHHHHHHHHHHHHSC------CCSSEEEEECTTSCBSSCCB
T ss_pred             hhhhhhhhHHHHHHcCC------CCcceEEEECCCCCEEeecc
Confidence            3333333444 588999      78999999999999998655

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.20  E-value=5.2e-11  Score=97.86  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       257 d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      +.+|...++++++||+++|+|| ++||++|....|.+.++.+++++ ++.++.|+.|.                      
T Consensus        38 ~~~~~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------   93 (141)
T 3hxs_A           38 DYENHSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK----------------------   93 (141)
T ss_dssp             CCSSCCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------
T ss_pred             ccccchhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC----------------------
Confidence            4578888899999999999999 99999999999999999998864 48888887653                      


Q ss_pred             eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                            +..+.+.||+      ..+|+++++|++|+++.
T Consensus        94 ------~~~~~~~~~v------~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           94 ------EPELARDFGI------QSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             ------CHHHHHHTTC------CSSSEEEEECSSSCCEE
T ss_pred             ------CHHHHHHcCC------CCcCEEEEEeCCCCEEE
Confidence                  2356788898      68999999999999873

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.19  E-value=6.8e-11  Score=106.91  Aligned_cols=71  Identities=15%  Similarity=0.099  Sum_probs=55.9

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh---CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      .++.|++++++|| ++||++|+...|.++++.++++.   .++.+..|..+.                            
T Consensus       134 ~~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~----------------------------  184 (243)
T 2hls_A          134 KSLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE----------------------------  184 (243)
T ss_dssp             HHCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT----------------------------
T ss_pred             HHcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc----------------------------
Confidence            3567888899999 99999999999999999999853   467777776542                            


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                      ...+.++||+      ..+|++++   +|+++
T Consensus       185 ~~~~~~~~~V------~~vPt~~i---~G~~~  207 (243)
T 2hls_A          185 NPDIADKYGV------MSVPSIAI---NGYLV  207 (243)
T ss_dssp             CHHHHHHTTC------CSSSEEEE---TTEEE
T ss_pred             CHHHHHHcCC------eeeCeEEE---CCEEE
Confidence            1346677888      67888777   78876

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.16  E-value=5.5e-11  Score=113.67  Aligned_cols=44  Identities=14%  Similarity=0.150  Sum_probs=37.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-CcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d  313 (384)
                      .+|+++|+|| ++||++|+...|.+.++.+++++. ++.++.|..+
T Consensus       266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~  310 (361)
T 3uem_A          266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST  310 (361)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETT
T ss_pred             CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence            5799999999 999999999999999999999764 4666655544

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.16  E-value=3.6e-11  Score=97.89  Aligned_cols=89  Identities=15%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHH--HHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN--DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~--~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (384)
                      +..+...||+++|+|| ++||++|..+.|.|+  ++.+++++ ++.++.|+.++                         .
T Consensus        22 ~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~-------------------------~   74 (133)
T 3fk8_A           22 LAAGKRTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN-------------------------F   74 (133)
T ss_dssp             HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT-------------------------T
T ss_pred             HHHHHhcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc-------------------------c
Confidence            4444457999999999 999999999999999  99988864 58999998863                         1


Q ss_pred             cCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCC
Q psy17178        341 DLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      |....+.+.|++...   ..+|+++++|++|++++.+..+.
T Consensus        75 ~~~~~l~~~~~v~~~---~~~Pt~~~~d~~G~~~~~~~g~~  112 (133)
T 3fk8_A           75 DRNLELSQAYGDPIQ---DGIPAVVVVNSDGKVRYTTKGGE  112 (133)
T ss_dssp             TSSHHHHHHTTCGGG---GCSSEEEEECTTSCEEEECCSCT
T ss_pred             cchHHHHHHhCCccC---CccceEEEECCCCCEEEEecCCc
Confidence            234566777877211   36899999999999999776543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.16  E-value=5.1e-11  Score=106.42  Aligned_cols=65  Identities=9%  Similarity=0.033  Sum_probs=50.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++++|| ++||++|+...|.++++.+++  .++.++.|+.|.                            ...+.+
T Consensus       135 ~~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~--~~v~~~~vd~~~----------------------------~~~l~~  183 (229)
T 2ywm_A          135 DIPIEIWVFV-TTSCGYCPSAAVMAWDFALAN--DYITSKVIDASE----------------------------NQDLAE  183 (229)
T ss_dssp             CSCEEEEEEE-CTTCTTHHHHHHHHHHHHHHC--TTEEEEEEEGGG----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCcchHHHHHHHHHHHHHC--CCeEEEEEECCC----------------------------CHHHHH
Confidence            4556688999 999999999999999999887  368888777552                            234677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .||+      ..+|++++   +|++
T Consensus       184 ~~~v------~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          184 QFQV------VGVPKIVI---NKGV  199 (229)
T ss_dssp             HTTC------CSSSEEEE---GGGT
T ss_pred             HcCC------cccCEEEE---CCEE
Confidence            8888      67888777   7774

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=9.2e-11  Score=94.89  Aligned_cols=86  Identities=13%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      .+.+++++.+||+++|+|| ++||++|..+.|.+   +++.+.++ .++.++.|+.|.                      
T Consensus        17 ~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------   72 (130)
T 2kuc_A           17 PEALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK----------------------   72 (130)
T ss_dssp             HHHHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS----------------------
T ss_pred             HHHHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC----------------------
Confidence            3456777778999999999 99999999999998   55555543 346666666553                      


Q ss_pred             eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                          +....+.++||+      ..+|+++++|++|+++..+..
T Consensus        73 ----~~~~~~~~~~~v------~~~Pt~~~~d~~G~~~~~~~G  105 (130)
T 2kuc_A           73 ----GEGVELRKKYGV------HAYPTLLFINSSGEVVYRLVG  105 (130)
T ss_dssp             ----TTHHHHHHHTTC------CSSCEEEEECTTSCEEEEEES
T ss_pred             ----cchHHHHHHcCC------CCCCEEEEECCCCcEEEEecC
Confidence                234577888998      689999999999999987653

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.09  E-value=1.2e-10  Score=99.06  Aligned_cols=83  Identities=10%  Similarity=-0.037  Sum_probs=63.3

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  341 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D  341 (384)
                      ...+++++||+++|+|| ++|||+|+.++|.|++++++++  ++.++.|++|..   .+..+++       .-       
T Consensus        46 ~~~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~---~~~~~~~-------~~-------  105 (167)
T 1z6n_A           46 TERLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA---EDDLRQR-------LA-------  105 (167)
T ss_dssp             HHHHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHH---HHHTTTT-------TT-------
T ss_pred             HHHHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCC---HHHHHHH-------HH-------
Confidence            34466788999999999 9999999999999999998763  688888887632   2233322       10       


Q ss_pred             CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                              .|+      ..+|+++++|++|+++..+.
T Consensus       106 --------~~v------~~iPt~i~~~~~G~~~~~~g  128 (167)
T 1z6n_A          106 --------LER------IAIPLVLVLDEEFNLLGRFV  128 (167)
T ss_dssp             --------CSS------CCSSEEEEECTTCCEEEEEE
T ss_pred             --------cCC------CCcCeEEEECCCCCEEEEEc
Confidence                    134      57899999999999987663

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.08  E-value=1.5e-11  Score=104.84  Aligned_cols=110  Identities=9%  Similarity=-0.029  Sum_probs=69.5

Q ss_pred             ceEEccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcccee
Q psy17178         71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  147 (384)
Q Consensus        71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  147 (384)
                      +.+.+++.+||+++|+|| ++||++|+...+.+   .++.+.+++ ++.++.|+.|............ ..  .....+.
T Consensus        38 ~~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~-~~--~~~~~~~  112 (172)
T 3f9u_A           38 LGMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIM-EN--GTERTLR  112 (172)
T ss_dssp             HHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEE-ET--TEEEEEE
T ss_pred             HHHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhh-hc--chhhhhh
Confidence            345666678999999999 99999999853333   455555544 7999999998744322111110 00  0012233


Q ss_pred             EEeeCcchh-HHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        148 LLSDLTHKI-SLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       148 ~l~D~~~~~-~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+.|..+.+ ++.||+        .   ..|+++++|++|+++....|..
T Consensus       113 ~~~~~~~~~~~~~~~v--------~---~~Pt~~lid~~G~~~~~~~G~~  151 (172)
T 3f9u_A          113 TVGDKWSYLQRVKFGA--------N---AQPFYVLIDNEGNPLNKSYAYD  151 (172)
T ss_dssp             EHHHHHHHHHHHHHSC--------C---CSSEEEEECTTSCBSSCCBCSC
T ss_pred             hhhhhhhHHHHHHcCC--------C---CcceEEEECCCCCEEeeccCCC
Confidence            333433444 578888        2   3457789999999998777766

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.07  E-value=4.5e-10  Score=88.18  Aligned_cols=76  Identities=8%  Similarity=0.046  Sum_probs=62.9

Q ss_pred             ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +.+||+++|+|| ++||++|+...|.+++++++++  ++.++.|+.|+                           .+..+
T Consensus        21 ~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~~   70 (111)
T 2pu9_C           21 AAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTL   70 (111)
T ss_dssp             TCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHH
T ss_pred             hcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc---------------------------chHHH
Confidence            346899999999 9999999999999999998875  58888888762                           13467


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .++|++      ..+|+ ++++++|+++..+..
T Consensus        71 ~~~~~v------~~~Pt-~~~~~~G~~~~~~~G   96 (111)
T 2pu9_C           71 AKELGI------RVVPT-FKILKENSVVGEVTG   96 (111)
T ss_dssp             HHHHCC------SBSSE-EEEESSSSEEEEEES
T ss_pred             HHHcCC------CeeeE-EEEEeCCcEEEEEcC
Confidence            788998      67887 788899999986654

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.06  E-value=8.6e-10  Score=86.85  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=63.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||++|....|.++++++++++ ++.++.|+.|.                            +..+.+
T Consensus        16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   65 (112)
T 2voc_A           16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE----------------------------NQETAG   65 (112)
T ss_dssp             SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CCSHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence            7899999999 99999999999999999999864 58999998763                            124678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +||+      ..+|+++++ ++|+++..+..
T Consensus        66 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   89 (112)
T 2voc_A           66 KYGV------MSIPTLLVL-KDGEVVETSVG   89 (112)
T ss_dssp             HTTC------CSBSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CcccEEEEE-eCCEEEEEEeC
Confidence            8998      689999999 89999987653

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.02  E-value=5e-10  Score=91.89  Aligned_cols=86  Identities=15%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             CccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcccee
Q psy17178         68 GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  147 (384)
Q Consensus        68 ~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  147 (384)
                      .+|...++++++||+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                       
T Consensus        39 ~~~~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-----------------------   93 (141)
T 3hxs_A           39 YENHSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK-----------------------   93 (141)
T ss_dssp             CSSCCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT-----------------------
T ss_pred             cccchhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC-----------------------
Confidence            377888999999999999999 99999999999999999999864 47887777653                       


Q ss_pred             EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        148 LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       148 ~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                           ..++++.|||        .+   .|+++++|++|++. ...|.
T Consensus        94 -----~~~~~~~~~v--------~~---~Pt~~~~~~~g~~~-~~~G~  124 (141)
T 3hxs_A           94 -----EPELARDFGI--------QS---IPTIWFVPMKGEPQ-VNMGA  124 (141)
T ss_dssp             -----CHHHHHHTTC--------CS---SSEEEEECSSSCCE-EEESC
T ss_pred             -----CHHHHHHcCC--------CC---cCEEEEEeCCCCEE-EEeCC
Confidence                 2346777887        22   34678899999886 34443

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.01  E-value=8.4e-10  Score=91.50  Aligned_cols=97  Identities=8%  Similarity=0.035  Sum_probs=74.9

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHh
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  322 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~  322 (384)
                      .|..+++.....+   +++.+...-.+||+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.        
T Consensus        31 ~~~~~~~~~v~~l---~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~--------   97 (148)
T 3p2a_A           31 CGHSLFDGEVINA---TAETLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEA--------   97 (148)
T ss_dssp             TCCBTTCCCCEEC---CTTTHHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT--------
T ss_pred             cCCccccCCceec---CHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcC--------
Confidence            4566677777655   55555544457899999999 99999999999999999998864 48888887762        


Q ss_pred             cCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        323 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                                          +..+.+.|++      ..+|+++++ ++|+++..+..
T Consensus        98 --------------------~~~l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  127 (148)
T 3p2a_A           98 --------------------EPALSTRFRI------RSIPTIMLY-RNGKMIDMLNG  127 (148)
T ss_dssp             --------------------CHHHHHHTTC------CSSSEEEEE-ETTEEEEEESS
T ss_pred             --------------------CHHHHHHCCC------CccCEEEEE-ECCeEEEEEeC
Confidence                                2356778898      678987777 59999986653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.00  E-value=5.5e-10  Score=88.70  Aligned_cols=76  Identities=14%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      ++.+||+++|+|| ++||++|+...|.++++.+++++  +.++.|+.|.                            ...
T Consensus        27 ~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~----------------------------~~~   75 (116)
T 3qfa_C           27 DAAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD----------------------------CQD   75 (116)
T ss_dssp             HHHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT----------------------------THH
T ss_pred             HhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CHH
Confidence            3447899999999 99999999999999999988754  8888888763                            235


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+.|++      ..+|+++++ ++|+++..+..
T Consensus        76 l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  102 (116)
T 3qfa_C           76 VASECEV------KSMPTFQFF-KKGQKVGEFSG  102 (116)
T ss_dssp             HHHHTTC------CSSSEEEEE-SSSSEEEEEES
T ss_pred             HHHHcCC------ccccEEEEE-eCCeEEEEEcC
Confidence            6788998      678887777 79999887664

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.99  E-value=1e-09  Score=85.76  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             ccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178        265 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  344 (384)
Q Consensus       265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  344 (384)
                      +.+..+|+++|+|| |+||++|+...|.+.++.++++  ++.++.|+.|.                            ..
T Consensus        15 l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~----------------------------~~   63 (105)
T 3zzx_A           15 LNEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDE----------------------------CE   63 (105)
T ss_dssp             HHHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTT----------------------------CH
T ss_pred             HHhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEeccc----------------------------CH
Confidence            33446799999999 9999999999999999998774  56677666542                            24


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .++++||+      ..+|+.+++ ++|+++..+..
T Consensus        64 ~l~~~~~V------~~~PT~~~~-~~G~~v~~~~G   91 (105)
T 3zzx_A           64 DIAQDNQI------ACMPTFLFM-KNGQKLDSLSG   91 (105)
T ss_dssp             HHHHHTTC------CBSSEEEEE-ETTEEEEEEES
T ss_pred             HHHHHcCC------CeecEEEEE-ECCEEEEEEeC
Confidence            57788999      688876555 79999987764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.99  E-value=1.7e-09  Score=84.93  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||++|....|.++++.++++..++.++.|+.|.                            ...+.+
T Consensus        20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~   70 (112)
T 3d6i_A           20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE----------------------------NSEISE   70 (112)
T ss_dssp             TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc----------------------------CHHHHH
Confidence            4899999999 99999999999999999998766679999998773                            125678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .||+      ..+|+++++ ++|+++..+..
T Consensus        71 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   94 (112)
T 3d6i_A           71 LFEI------SAVPYFIII-HKGTILKELSG   94 (112)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEECS
T ss_pred             HcCC------CcccEEEEE-ECCEEEEEecC
Confidence            8998      688987777 69999986654

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.99  E-value=5e-10  Score=91.71  Aligned_cols=80  Identities=10%  Similarity=0.046  Sum_probs=65.5

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  341 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D  341 (384)
                      .++.++.+||+++|+|| ++||++|..+.|.++++.+++  .++.++.|+.|.                           
T Consensus        38 ~~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~v~~~~---------------------------   87 (139)
T 3d22_A           38 KLSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENY--PSLMFLVIDVDE---------------------------   87 (139)
T ss_dssp             HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT---------------------------
T ss_pred             HHHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCcc---------------------------
Confidence            45555567999999999 999999999999999999887  368999998762                           


Q ss_pred             CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                       ...+.++||+      ..+|+++++ ++|+++..+..
T Consensus        88 -~~~~~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  117 (139)
T 3d22_A           88 -LSDFSASWEI------KATPTFFFL-RDGQQVDKLVG  117 (139)
T ss_dssp             -SHHHHHHTTC------CEESEEEEE-ETTEEEEEEES
T ss_pred             -cHHHHHHcCC------CcccEEEEE-cCCeEEEEEeC
Confidence             2357788998      688987777 89999987664

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.99  E-value=1.2e-09  Score=87.52  Aligned_cols=76  Identities=9%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +.+||+++|+|| ++||++|+...|.++++.++++  ++.++.|+.++                           .+..+
T Consensus        34 ~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------~~~~~   83 (124)
T 1faa_A           34 AAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTL   83 (124)
T ss_dssp             HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHH
T ss_pred             hcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------chHHH
Confidence            347899999999 9999999999999999998875  58888888762                           12467


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .++||+      ..+|+ ++++++|+++..+..
T Consensus        84 ~~~~~v------~~~Pt-~~~~~~G~~~~~~~G  109 (124)
T 1faa_A           84 AKELGI------RVVPT-FKILKENSVVGEVTG  109 (124)
T ss_dssp             HHHHCC------SSSSE-EEEEETTEEEEEEES
T ss_pred             HHHcCC------CeeeE-EEEEeCCcEEEEEcC
Confidence            788998      67887 667789999987664

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.98  E-value=2.9e-10  Score=91.94  Aligned_cols=98  Identities=10%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      ....++|+++.  .   +++.++....+||+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|.       
T Consensus        19 ~~~~~~~~~~~--~---~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------   84 (128)
T 3ul3_B           19 RMFKKVPRLQQ--N---GSNIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK-------   84 (128)
T ss_dssp             -------CCCC--C---CCSSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG-------
T ss_pred             HHhccCCcccc--C---CccHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC-------
Confidence            35567788773  3   55667777889999999999 99999999999999999999874 57888886542       


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                                           ..++++.|||        +++   |+++++ ++|++.....|..
T Consensus        85 ---------------------~~~l~~~~~v--------~~~---Pt~~~~-~~G~~~~~~~G~~  116 (128)
T 3ul3_B           85 ---------------------NESLARKFSV--------KSL---PTIILL-KNKTMLARKDHFV  116 (128)
T ss_dssp             ---------------------CHHHHHHTTC--------CSS---SEEEEE-ETTEEEEEESSCC
T ss_pred             ---------------------CHHHHHHcCC--------CCc---CEEEEE-ECCEEEEEecCCC
Confidence                                 1257777887        232   345566 6888776555543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.98  E-value=4.9e-10  Score=90.21  Aligned_cols=76  Identities=12%  Similarity=0.136  Sum_probs=61.4

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      +..+||+++|+|| ++||++|....|.|+++.++++  ++.++.|+.|.                            +..
T Consensus        34 ~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~   82 (124)
T 1xfl_A           34 ANESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKS   82 (124)
T ss_dssp             HHHTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHH
T ss_pred             hhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHH
Confidence            3346999999999 9999999999999999998874  68888888752                            245


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.++|++      ..+|+++++ ++|+++..+..
T Consensus        83 l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  109 (124)
T 1xfl_A           83 VASDWAI------QAMPTFMFL-KEGKILDKVVG  109 (124)
T ss_dssp             HHHHTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HHHHcCC------CccCEEEEE-ECCEEEEEEeC
Confidence            6788998      678875555 89999987654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.97  E-value=1.3e-09  Score=85.53  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=62.0

Q ss_pred             cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        268 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       268 ~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      .+||+++|+|| ++||++|+...|.++++.++++  ++.++.|+.|.                            ...+.
T Consensus        22 ~~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~l~   70 (109)
T 3f3q_A           22 AQDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDE----------------------------LGDVA   70 (109)
T ss_dssp             TSSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHH
T ss_pred             hcCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHH
Confidence            36899999999 9999999999999999999884  47888887652                            24567


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +.|++      ..+|++++++ +|+++..+...
T Consensus        71 ~~~~v------~~~Pt~~~~~-~G~~~~~~~G~   96 (109)
T 3f3q_A           71 QKNEV------SAMPTLLLFK-NGKEVAKVVGA   96 (109)
T ss_dssp             HHTTC------CSSSEEEEEE-TTEEEEEEESS
T ss_pred             HHcCC------CccCEEEEEE-CCEEEEEEeCC
Confidence            88998      6889988887 99998877643

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.95  E-value=2.6e-09  Score=82.64  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=61.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~   65 (105)
T 1nsw_A           16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTS   65 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998864 38888888753                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .||+      ..+|+++++ ++|+++..+..
T Consensus        66 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   89 (105)
T 1nsw_A           66 QFGI------MSIPTLILF-KGGRPVKQLIG   89 (105)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------ccccEEEEE-eCCeEEEEEec
Confidence            8998      688999999 79999886653

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.94  E-value=1e-09  Score=89.50  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178        259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  338 (384)
Q Consensus       259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  338 (384)
                      ++-.-.+++.+||++||+|| ++||++|..+.|.++++.+++   ++.++.|+.|.                        
T Consensus        29 ~~~~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~------------------------   80 (133)
T 3cxg_A           29 GSLNQVFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI------------------------   80 (133)
T ss_dssp             THHHHHHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT------------------------
T ss_pred             hHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc------------------------
Confidence            33334455667899999999 999999999999999887665   47777776542                        


Q ss_pred             EecCchHHHHHhCceecCCCceeeEEEEE-eCCce--EEEEEec
Q psy17178        339 LSDLTHKISLDYGVYLSDQGHTLDKYCLE-CYKMV--IVYWFER  379 (384)
Q Consensus       339 ~~D~~~~~~~~~gv~~~~~~~~~p~~~lI-d~~G~--i~~~~~~  379 (384)
                          ...+.+.||+      ..+|+++++ |++|+  ++..+..
T Consensus        81 ----~~~l~~~~~v------~~~Pt~~~~~~~~g~g~~~~~~~G  114 (133)
T 3cxg_A           81 ----HPKLNDQHNI------KALPTFEFYFNLNNEWVLVHTVEG  114 (133)
T ss_dssp             ----CHHHHHHTTC------CSSSEEEEEEEETTEEEEEEEEES
T ss_pred             ----hHHHHHhcCC------CCCCEEEEEEecCCCeEEEEEEcC
Confidence                2457788998      689999888 55666  8776653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.94  E-value=2.1e-09  Score=87.78  Aligned_cols=71  Identities=10%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   86 (136)
T 2l5l_A           37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK----------------------------EQELAG   86 (136)
T ss_dssp             CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------CHHHHH
Confidence            4689999999 99999999999999999998864 48888888753                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .|++      ..+|+++++|++|+++.
T Consensus        87 ~~~v------~~~Pt~~~~~~~G~~~~  107 (136)
T 2l5l_A           87 AFGI------RSIPSILFIPMEGKPEM  107 (136)
T ss_dssp             HTTC------CSSCEEEEECSSSCCEE
T ss_pred             HcCC------CCCCEEEEECCCCcEEE
Confidence            8998      68999999999999873

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.93  E-value=7.8e-10  Score=110.53  Aligned_cols=46  Identities=9%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  125 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~  125 (384)
                      .+++++|.|| +.||++|+...|.+.++.+++++.++.++.|+.+..
T Consensus        30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~   75 (504)
T 2b5e_A           30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN   75 (504)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTC
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCC
Confidence            4789999999 999999999999999999999876899999988763

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.93  E-value=5.4e-09  Score=80.85  Aligned_cols=74  Identities=9%  Similarity=0.056  Sum_probs=61.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++|+++|+|| ++||+.|....|.++++.++++++ +.++.|+.|.                            +..+.+
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~----------------------------~~~~~~   67 (106)
T 3die_A           18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE----------------------------NPSTAA   67 (106)
T ss_dssp             CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc----------------------------CHHHHH
Confidence            7899999999 999999999999999999998754 8888888753                            234667


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|++++++ +|+++..+..
T Consensus        68 ~~~v------~~~Pt~~~~~-~G~~~~~~~g   91 (106)
T 3die_A           68 KYEV------MSIPTLIVFK-DGQPVDKVVG   91 (106)
T ss_dssp             HTTC------CSBSEEEEEE-TTEEEEEEES
T ss_pred             hCCC------cccCEEEEEe-CCeEEEEEeC
Confidence            8888      6789888886 9999886653

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.93  E-value=4.5e-09  Score=94.78  Aligned_cols=44  Identities=9%  Similarity=0.031  Sum_probs=38.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh--CCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~d  123 (384)
                      .+++++|.|| ++||++|+...|.+.++++++++  .++.++.|+.+
T Consensus        29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~   74 (244)
T 3q6o_A           29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCA   74 (244)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETT
T ss_pred             CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCC
Confidence            3589999999 99999999999999999999976  46888888764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.92  E-value=4.4e-09  Score=82.44  Aligned_cols=74  Identities=14%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   71 (112)
T 1t00_A           22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE----------------------------NPGTAA   71 (112)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 48898888763                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .||+      ..+|+++++ ++|+++..+..
T Consensus        72 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   95 (112)
T 1t00_A           72 KYGV------MSIPTLNVY-QGGEVAKTIVG   95 (112)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             hCCC------CcccEEEEE-eCCEEEEEEeC
Confidence            8888      678876555 79999886653

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.91  E-value=1.7e-09  Score=113.86  Aligned_cols=72  Identities=8%  Similarity=-0.078  Sum_probs=57.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||++|+...|.++++++++++ ++.++.|+.|..                            ..+.+
T Consensus       674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~~----------------------------~~~~~  723 (780)
T 3apo_A          674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQAY----------------------------PQTCQ  723 (780)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC----------------------------HHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCCC----------------------------HHHHH
Confidence            5789999999 99999999999999999999865 588888877531                            24567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWF  377 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~  377 (384)
                      .||+      ..+|+++++ ++|+++..+
T Consensus       724 ~~~v------~~~Pt~~~~-~~g~~~~~~  745 (780)
T 3apo_A          724 KAGI------KAYPSVKLY-QYERAKKSI  745 (780)
T ss_dssp             HTTC------CSSSEEEEE-EEETTTTEE
T ss_pred             hcCC------CcCCEEEEE-cCCCccccc
Confidence            7888      578888888 677765433

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.91  E-value=4.4e-09  Score=83.73  Aligned_cols=74  Identities=12%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.|+++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~   79 (119)
T 1w4v_A           30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD----------------------------HTDLAI   79 (119)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------THHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998864 58898888763                            235778


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+++++ ++|+++..+..
T Consensus        80 ~~~v------~~~Pt~~~~-~~G~~~~~~~G  103 (119)
T 1w4v_A           80 EYEV------SAVPTVLAM-KNGDVVDKFVG  103 (119)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CcccEEEEE-eCCcEEEEEcC
Confidence            8998      678998888 79999886653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=3.5e-09  Score=97.74  Aligned_cols=74  Identities=12%  Similarity=0.205  Sum_probs=62.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||++|+.+.|.+.++.+++++ ++.++.|+.|..                            ..+.+
T Consensus        25 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~   74 (287)
T 3qou_A           25 MTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAE----------------------------QMIAA   74 (287)
T ss_dssp             TTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTC----------------------------HHHHH
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccC----------------------------HHHHH
Confidence            5899999999 99999999999999999999974 488988887631                            25677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .||+      ..+|+++++ ++|+++..+..
T Consensus        75 ~~~v------~~~Pt~~~~-~~G~~~~~~~g   98 (287)
T 3qou_A           75 QFGL------RAIPTVYLF-QNGQPVDGFQG   98 (287)
T ss_dssp             TTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CCCCeEEEE-ECCEEEEEeeC
Confidence            8898      688988888 69999987764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.90  E-value=7.1e-09  Score=81.40  Aligned_cols=73  Identities=15%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.++++.++++++ +.++.|+.|..                            ..+.+
T Consensus        24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~~----------------------------~~~~~   73 (115)
T 1thx_A           24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDPN----------------------------PTTVK   73 (115)
T ss_dssp             CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTTC----------------------------HHHHH
T ss_pred             CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCCC----------------------------HHHHH
Confidence            5789999999 999999999999999999988654 89999987631                            24678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .|++      ..+|+++++ ++|+++..+.
T Consensus        74 ~~~v------~~~Pt~~~~-~~G~~~~~~~   96 (115)
T 1thx_A           74 KYKV------EGVPALRLV-KGEQILDSTE   96 (115)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEE
T ss_pred             HcCC------CceeEEEEE-cCCEEEEEec
Confidence            8998      678999999 8999998665

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.90  E-value=1.3e-09  Score=88.44  Aligned_cols=87  Identities=17%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             EEccccCCCeEEEEEeeCCCCCCchHHHHHHH--HhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEe
Q psy17178         73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN--DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  150 (384)
Q Consensus        73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~--~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  150 (384)
                      +......||+++|+|| ++||++|+...|.|.  ++.+++++ ++.++.|+.+.                         .
T Consensus        22 ~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~-------------------------~   74 (133)
T 3fk8_A           22 LAAGKRTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN-------------------------F   74 (133)
T ss_dssp             HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT-------------------------T
T ss_pred             HHHHHhcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc-------------------------c
Confidence            3334456899999999 999999999999999  99888864 58899998753                         1


Q ss_pred             eCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        151 DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       151 D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      |...++++.||+...        ...|+++++|++|++.....|
T Consensus        75 ~~~~~l~~~~~v~~~--------~~~Pt~~~~d~~G~~~~~~~g  110 (133)
T 3fk8_A           75 DRNLELSQAYGDPIQ--------DGIPAVVVVNSDGKVRYTTKG  110 (133)
T ss_dssp             TSSHHHHHHTTCGGG--------GCSSEEEEECTTSCEEEECCS
T ss_pred             cchHHHHHHhCCccC--------CccceEEEECCCCCEEEEecC
Confidence            223456777777211        123577899999999866555

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.90  E-value=3.3e-09  Score=88.29  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++|++||+|| ++||++|+.+.|.|+++.++++++ +.++.|+.|.                            ...+++
T Consensus        22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~----------------------------~~~l~~   71 (149)
T 3gix_A           22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ----------------------------TAVYTQ   71 (149)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT----------------------------CCHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc----------------------------CHHHHH
Confidence            5899999999 999999999999999999888543 7888887652                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .|++      ..+|+++ ++++|+++.
T Consensus        72 ~~~v------~~~Pt~~-~~~~G~~v~   91 (149)
T 3gix_A           72 YFDI------SYIPSTV-FFFNGQHMK   91 (149)
T ss_dssp             HTTC------CSSSEEE-EEETTEEEE
T ss_pred             HcCC------CccCeEE-EEECCeEEE
Confidence            8998      6788887 777999984

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.89  E-value=3.4e-09  Score=88.77  Aligned_cols=73  Identities=8%  Similarity=0.030  Sum_probs=62.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|++||+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~----------------------------~~~l~~  112 (155)
T 2ppt_A           63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA----------------------------HPAVAG  112 (155)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------STHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------cHHHHH
Confidence            5789999999 99999999999999999999865 48899888762                            125778


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|++      ..+|+++++ ++|+++..+.
T Consensus       113 ~~~i------~~~Pt~~~~-~~G~~~~~~~  135 (155)
T 2ppt_A          113 RHRI------QGIPAFILF-HKGRELARAA  135 (155)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEE
T ss_pred             HcCC------CcCCEEEEE-eCCeEEEEec
Confidence            8998      688998888 6999998665

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.89  E-value=6.7e-09  Score=80.58  Aligned_cols=74  Identities=9%  Similarity=0.121  Sum_probs=60.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   67 (107)
T 1dby_A           18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS   67 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998864 48888888753                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +||+      ..+|+++++ ++|+++..+..
T Consensus        68 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   91 (107)
T 1dby_A           68 EYGI------RSIPTIMVF-KGGKKCETIIG   91 (107)
T ss_dssp             HHTC------CSSCEEEEE-SSSSEEEEEES
T ss_pred             HCCC------CcCCEEEEE-eCCEEEEEEeC
Confidence            8998      678886665 79999886653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.89  E-value=5.7e-09  Score=81.72  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      ||+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            ...+.+.
T Consensus        24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~   73 (112)
T 1ep7_A           24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAEA   73 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHHH
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------hHHHHHH
Confidence            899999999 99999999999999999998864 68898888753                            2456788


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |++      ..+|+++ +.++|+++..+..
T Consensus        74 ~~v------~~~Pt~~-~~~~G~~~~~~~G   96 (112)
T 1ep7_A           74 AGI------TAMPTFH-VYKDGVKADDLVG   96 (112)
T ss_dssp             HTC------CBSSEEE-EEETTEEEEEEES
T ss_pred             cCC------CcccEEE-EEECCeEEEEEcC
Confidence            998      6788744 4589999987654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.88  E-value=3e-09  Score=82.59  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++|+++|+|| ++||++|....|.++++.+++  .++.++.|+.|..                            ..+.+
T Consensus        17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~--~~~~~~~vd~~~~----------------------------~~l~~   65 (105)
T 4euy_A           17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENY--NYVEKIEILLQDM----------------------------QEIAG   65 (105)
T ss_dssp             CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTC--TTEEEEEEEECCC---------------------------------
T ss_pred             cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHc--CCceEEEEECCCC----------------------------HHHHH
Confidence            5799999999 999999999999999999987  3688888886631                            14566


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|++++++ +|+++..+..
T Consensus        66 ~~~v------~~~Pt~~~~~-~G~~~~~~~g   89 (105)
T 4euy_A           66 RYAV------FTGPTVLLFY-NGKEILRESR   89 (105)
T ss_dssp             ----------CCCCEEEEEE-TTEEEEEEES
T ss_pred             hcCC------CCCCEEEEEe-CCeEEEEEeC
Confidence            7888      6889988885 9999886653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=9.4e-09  Score=83.09  Aligned_cols=74  Identities=9%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh---CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .+|+++|+|| ++||++|+...|.++++.+++++   .++.++.|+.|.                            +..
T Consensus        24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~   74 (133)
T 1x5d_A           24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV----------------------------NQV   74 (133)
T ss_dssp             SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT----------------------------CCH
T ss_pred             CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC----------------------------CHH
Confidence            4789999999 99999999999999999999974   458888887652                            146


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.+.|++      ..+|+++++++ |+++..+.
T Consensus        75 l~~~~~v------~~~Pt~~~~~~-g~~~~~~~  100 (133)
T 1x5d_A           75 LASRYGI------RGFPTIKIFQK-GESPVDYD  100 (133)
T ss_dssp             HHHHHTC------CSSSEEEEEET-TEEEEEEC
T ss_pred             HHHhCCC------CeeCeEEEEeC-CCceEEec
Confidence            7888998      68999999997 88777665

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.88  E-value=7.3e-09  Score=103.45  Aligned_cols=72  Identities=3%  Similarity=0.090  Sum_probs=55.8

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh--CCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhH
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  157 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  157 (384)
                      ||+++|+|| ++||++|+..+|.+.++++++++  .++.++.|+.|.                          |...+++
T Consensus        30 ~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------d~~~~l~   82 (519)
T 3t58_A           30 SSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------ETNSAVC   82 (519)
T ss_dssp             SSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------GGGHHHH
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------cccHHHH
Confidence            589999999 99999999999999999999976  368888887653                          1234678


Q ss_pred             HhhcCcccCCCCcccceeEEEEEEEec---CCCcc
Q psy17178        158 LDYGVYLSDQGPVRGSLLSTAIFVYAL---TSPVN  189 (384)
Q Consensus       158 ~~ygv~~~~~g~~~g~~~~~~~~vid~---~G~v~  189 (384)
                      +.|||        .+   .|+++++++   +|++.
T Consensus        83 ~~~~V--------~~---~PTl~~f~~g~~~G~~~  106 (519)
T 3t58_A           83 REFNI--------AG---FPTVRFFQAFTKNGSGA  106 (519)
T ss_dssp             HHTTC--------CS---BSEEEEECTTCCSCCCE
T ss_pred             HHcCC--------cc---cCEEEEEcCcccCCCce
Confidence            88888        33   346678886   56543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.87  E-value=3e-09  Score=111.87  Aligned_cols=153  Identities=7%  Similarity=0.101  Sum_probs=96.0

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      ++++.|++++|.|| ++||++|+..+|.|.++++++++ ++.++.|+.+..                            .
T Consensus       450 ~~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~  499 (780)
T 3apo_A          450 FPASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIH----------------------------E  499 (780)
T ss_dssp             SCTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC----------------------------H
T ss_pred             HHHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCC----------------------------H
Confidence            34457899999999 99999999999999999999974 588888876531                            1


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccceeeeeeechhhHHHHHHHHHHHHHHHHhh
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYY  234 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~~l~~~~~~~~~~~~~~~~~~~~~~~~  234 (384)
                      .+++.|||        .+.   |+++++ ++|++. ...|.       +.. .. +         .   -++-..    .
T Consensus       500 ~~~~~~~v--------~~~---Pt~~~~-~~g~~~-~~~g~-------~~~-~~-l---------~---~fi~~~----~  541 (780)
T 3apo_A          500 GLCNMYNI--------QAY---PTTVVF-NQSSIH-EYEGH-------HSA-EQ-I---------L---EFIEDL----R  541 (780)
T ss_dssp             HHHHHTTC--------CSS---SEEEEE-ETTEEE-EECSC-------SCH-HH-H---------H---HHHHHH----H
T ss_pred             HHHHHcCC--------CcC---CeEEEE-cCCcee-eecCc-------ccH-HH-H---------H---HHHHhh----c
Confidence            26777887        332   344566 456541 11111       110 00 0         0   000000    0


Q ss_pred             hccccCCCCCCCCCCceeeeEEcCcceeeecccc-----CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEE
Q psy17178        235 HASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDY-----YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVA  309 (384)
Q Consensus       235 ~~~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~-----~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~  309 (384)
                      .            |..  ..+   +++  ++.++     +++.++|.|+ +.||+.|....|.+.++.+++++ .+.+..
T Consensus       542 ~------------~~v--~~l---~~~--~f~~~v~~~~~~~~~lv~F~-ap~C~~c~~~~p~~~~lA~~~~~-~v~~~~  600 (780)
T 3apo_A          542 N------------PSV--VSL---TPS--TFNELVKQRKHDEVWMVDFY-SPWSHPSQVLMPEWKRMARTLTG-LINVGS  600 (780)
T ss_dssp             S------------CSE--EEC---CHH--HHHHHTTTCCTTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred             c------------cce--eec---Ccc--cHHHHhhccCCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-CeEEEE
Confidence            0            111  112   222  22221     2466788888 99999999999999999999975 488888


Q ss_pred             EeCCCHH
Q psy17178        310 ASVDSHF  316 (384)
Q Consensus       310 Is~d~~~  316 (384)
                      |..+...
T Consensus       601 vd~~~~~  607 (780)
T 3apo_A          601 VDCGQYH  607 (780)
T ss_dssp             EETTTTH
T ss_pred             EECcchH
Confidence            8766443

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=4.1e-09  Score=86.10  Aligned_cols=82  Identities=12%  Similarity=0.025  Sum_probs=60.0

Q ss_pred             ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        267 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       267 d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +-++++++|+|| ++||++|+.+.|.++++.+++++.++.++.|+.|...                            .+
T Consensus        23 ~~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~----------------------------~~   73 (137)
T 2dj0_A           23 RDKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT----------------------------DV   73 (137)
T ss_dssp             HSTTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH----------------------------HH
T ss_pred             cCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH----------------------------HH
Confidence            345679999999 9999999999999999999997667888888776422                            23


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .+.|++.....-..+|+++++ ++|+++..+.
T Consensus        74 ~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~  104 (137)
T 2dj0_A           74 STRYKVSTSPLTKQLPTLILF-QGGKEAMRRP  104 (137)
T ss_dssp             HHHTTCCCCSSSSCSSEEEEE-SSSSEEEEES
T ss_pred             HHHccCcccCCcCCCCEEEEE-ECCEEEEEec
Confidence            444555100000378988888 7999988665

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.87  E-value=7.9e-09  Score=80.24  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||+.|....|.++++.+++++ .+.++.|+.|.                            ...+.+
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   69 (109)
T 3tco_A           20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDE----------------------------NQKIAD   69 (109)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEcccc----------------------------CHHHHH
Confidence            5899999999 99999999999999999998864 47888887642                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        70 ~~~i------~~~Pt~~~~-~~g~~~~~~~g   93 (109)
T 3tco_A           70 KYSV------LNIPTTLIF-VNGQLVDSLVG   93 (109)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             hcCc------ccCCEEEEE-cCCcEEEeeec
Confidence            8888      688999999 89999987654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.87  E-value=9.2e-09  Score=79.63  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=61.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   68 (107)
T 2i4a_A           19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD----------------------------NPETPN   68 (107)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------CCHHHH
T ss_pred             CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999999864 58888888763                            125678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|++      ..+|+++++ ++|+++..+.
T Consensus        69 ~~~v------~~~Pt~~~~-~~G~~~~~~~   91 (107)
T 2i4a_A           69 AYQV------RSIPTLMLV-RDGKVIDKKV   91 (107)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEE
T ss_pred             hcCC------CccCEEEEE-eCCEEEEEec
Confidence            8998      688999998 8999998665

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.87  E-value=7.1e-09  Score=86.48  Aligned_cols=73  Identities=11%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||++||+|| ++||++|+...|.++++.+++  .++.++.|+.|.                            ...+.+
T Consensus        31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~l~~   79 (153)
T 2wz9_A           31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKEL--PQVSFVKLEAEG----------------------------VPEVSE   79 (153)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHc--CCeEEEEEECCC----------------------------CHHHHH
Confidence            4899999999 999999999999999999887  468899888763                            135678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|++++++ +|+++..+..
T Consensus        80 ~~~v------~~~Pt~~~~~-~G~~~~~~~G  103 (153)
T 2wz9_A           80 KYEI------SSVPTFLFFK-NSQKIDRLDG  103 (153)
T ss_dssp             HTTC------CSSSEEEEEE-TTEEEEEEES
T ss_pred             HcCC------CCCCEEEEEE-CCEEEEEEeC
Confidence            8998      6899999999 9999886653

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.87  E-value=6.6e-09  Score=80.79  Aligned_cols=73  Identities=10%  Similarity=0.072  Sum_probs=60.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||++|....|.++++.+++  .++.++.|+.|..                            ..+.+
T Consensus        20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~--~~~~~~~vd~~~~----------------------------~~~~~   68 (107)
T 1gh2_A           20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKY--PQAVFLEVDVHQC----------------------------QGTAA   68 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTS----------------------------HHHHH
T ss_pred             CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHC--CCcEEEEEECccC----------------------------HHHHH
Confidence            5899999999 999999999999999999988  4688888887631                            34667


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        69 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   92 (107)
T 1gh2_A           69 TNNI------SATPTFQFF-RNKVRIDQYQG   92 (107)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             hcCC------CcccEEEEE-ECCeEEEEEeC
Confidence            8888      678987777 79999886653

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.87  E-value=6.6e-09  Score=82.82  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||++|....|.++++.+++++  +.++.|+.|.                            +..+.+
T Consensus        33 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~----------------------------~~~~~~   81 (122)
T 2vlu_A           33 AKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE----------------------------LKPIAE   81 (122)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC----------------------------CHHHHH
Confidence            5899999999 99999999999999999988753  8888888763                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +||+      ..+|+++++ ++|+++..+..
T Consensus        82 ~~~v------~~~Pt~~~~-~~G~~~~~~~G  105 (122)
T 2vlu_A           82 QFSV------EAMPTFLFM-KEGDVKDRVVG  105 (122)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CcccEEEEE-eCCEEEEEEeC
Confidence            8888      678875544 89999886653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.87  E-value=7.5e-09  Score=80.44  Aligned_cols=73  Identities=11%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|..                            ..+.+
T Consensus        19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~----------------------------~~~~~   68 (108)
T 2trx_A           19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   68 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC----------------------------TTHHH
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCC----------------------------HHHHH
Confidence            5789999999 99999999999999999998864 488888877631                            24677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +||+      ..+|+++++ ++|+++..+.
T Consensus        69 ~~~v------~~~Pt~~~~-~~G~~~~~~~   91 (108)
T 2trx_A           69 KYGI------RGIPTLLLF-KNGEVAATKV   91 (108)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEE
T ss_pred             HcCC------cccCEEEEE-eCCEEEEEEe
Confidence            8998      688999988 7999988665

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.86  E-value=7.8e-09  Score=82.26  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=67.2

Q ss_pred             cceeeeccc-c--CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcc
Q psy17178        259 QLKEIKLSD-Y--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK  335 (384)
Q Consensus       259 ~g~~~~l~d-~--~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~  335 (384)
                      +|...++.+ .  .||+++|+|| ++||+.|....|.|+++.+++  .++.++.|+.|..                    
T Consensus         9 ~g~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~--------------------   65 (118)
T 2f51_A            9 NGTHEALLNRIKEAPGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDKN--------------------   65 (118)
T ss_dssp             CSCHHHHHHHHHHCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTC--------------------
T ss_pred             cCCHHHHHHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCCC--------------------
Confidence            555555552 3  4899999999 999999999999999999888  6789999987631                    


Q ss_pred             eeEEecCchHHHHHhCceecCCCceeeEEEEEeC---CceEEEEEec
Q psy17178        336 IPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECY---KMVIVYWFER  379 (384)
Q Consensus       336 ~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~---~G~i~~~~~~  379 (384)
                              ..+.+.|++      ..+|++++++.   +|+++..+..
T Consensus        66 --------~~~~~~~~i------~~~Pt~~~~~~~~~~G~~~~~~~G   98 (118)
T 2f51_A           66 --------GNAADAYGV------SSIPALFFVKKEGNEIKTLDQFVG   98 (118)
T ss_dssp             --------HHHHHHTTC------CSSSEEEEEEEETTEEEEEEEEES
T ss_pred             --------HHHHHhcCC------CCCCEEEEEeCCCCcceEEEeecC
Confidence                    346788998      68899999976   4999987664

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.86  E-value=7e-09  Score=80.10  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      ++.+||+++|+|| ++||+.|....|.++++.++++  ++.++.|+.|.                            ...
T Consensus        16 ~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~   64 (105)
T 3m9j_A           16 DAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD----------------------------CQD   64 (105)
T ss_dssp             HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhh----------------------------hHH
Confidence            3446899999999 9999999999999999999884  48888888652                            134


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+.|++      ..+|+++++ ++|+++..+..
T Consensus        65 ~~~~~~v------~~~Pt~~~~-~~g~~~~~~~g   91 (105)
T 3m9j_A           65 VASESEV------KSMPTFQFF-KKGQKVGEFSG   91 (105)
T ss_dssp             HHHHTTC------CBSSEEEEE-ETTEEEEEEES
T ss_pred             HHHHcCC------CcCcEEEEE-ECCeEEEEEeC
Confidence            6778888      688998888 68998886664

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.86  E-value=5.4e-09  Score=83.52  Aligned_cols=75  Identities=12%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||+.|....|.++++.++++++++.++.|+.|.                            ...+.+
T Consensus        32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~----------------------------~~~~~~   82 (121)
T 2j23_A           32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE----------------------------QSQIAQ   82 (121)
T ss_dssp             SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC----------------------------CHHHHH
Confidence            6789999999 99999999999999999998877678899888763                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        83 ~~~v------~~~Pt~~~~-~~G~~~~~~~G  106 (121)
T 2j23_A           83 EVGI------RAMPTFVFF-KNGQKIDTVVG  106 (121)
T ss_dssp             HHTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CcccEEEEE-ECCeEEeeEcC
Confidence            8998      678887777 59999887653

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.85  E-value=3.8e-09  Score=86.19  Aligned_cols=80  Identities=13%  Similarity=-0.009  Sum_probs=61.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++ +++|+|| ++||++|+.+.|.++++.++++   +.++.|+.++......                   .|....+.+
T Consensus        31 ~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~-------------------~d~~~~l~~   86 (135)
T 3emx_A           31 QG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERE-------------------LSAARLEMN   86 (135)
T ss_dssp             TS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHH-------------------HHHHHHHHH
T ss_pred             CC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhh-------------------hhhhHHHHH
Confidence            44 8999999 9999999999999999998774   8899998865432211                   123367789


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +||+      ..+|++++++ +|+++..+..
T Consensus        87 ~~~v------~~~Pt~~~~~-~G~~v~~~~G  110 (135)
T 3emx_A           87 KAGV------EGTPTLVFYK-EGRIVDKLVG  110 (135)
T ss_dssp             HHTC------CSSSEEEEEE-TTEEEEEEES
T ss_pred             HcCC------ceeCeEEEEc-CCEEEEEEeC
Confidence            9999      6889555555 9999997764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.85  E-value=3.3e-09  Score=83.18  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  155 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  155 (384)
                      .+.+||+++|.|| ++|||+|+...|.+.++.++++  ++.++.|+.++                           ...+
T Consensus        20 ~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~   69 (111)
T 2pu9_C           20 KAAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT   69 (111)
T ss_dssp             TTCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred             HhcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc---------------------------chHH
Confidence            3446899999999 9999999999999999998875  58888887762                           1346


Q ss_pred             hHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        156 ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      +++.||+        ++++   + ++++++|++.....|.
T Consensus        70 ~~~~~~v--------~~~P---t-~~~~~~G~~~~~~~G~   97 (111)
T 2pu9_C           70 LAKELGI--------RVVP---T-FKILKENSVVGEVTGA   97 (111)
T ss_dssp             HHHHHCC--------SBSS---E-EEEESSSSEEEEEESS
T ss_pred             HHHHcCC--------Ceee---E-EEEEeCCcEEEEEcCC
Confidence            7788888        3333   3 6788999987655554

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.85  E-value=8e-09  Score=79.86  Aligned_cols=77  Identities=19%  Similarity=0.298  Sum_probs=61.4

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .+.+||+++|+|| ++||+.|....|.++++.++++ .++.++.|+.|.                            ...
T Consensus        16 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~----------------------------~~~   65 (106)
T 1xwb_A           16 TKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE----------------------------CED   65 (106)
T ss_dssp             HHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc----------------------------hHH
Confidence            3447899999999 9999999999999999998886 468888888762                            235


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+.|++      ..+|+.++ .++|+++..+..
T Consensus        66 ~~~~~~v------~~~Pt~~~-~~~G~~~~~~~g   92 (106)
T 1xwb_A           66 IAMEYNI------SSMPTFVF-LKNGVKVEEFAG   92 (106)
T ss_dssp             HHHHTTC------CSSSEEEE-EETTEEEEEEES
T ss_pred             HHHHcCC------CcccEEEE-EcCCcEEEEEcC
Confidence            6778888      67887544 479999887664

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.85  E-value=3.9e-09  Score=85.40  Aligned_cols=74  Identities=9%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|..                            ..+.+
T Consensus        39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~----------------------------~~l~~   88 (128)
T 2o8v_B           39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   88 (128)
T ss_dssp             CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC----------------------------CTTSG
T ss_pred             cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHH
Confidence            5799999999 99999999999999999998864 488998887631                            13456


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        89 ~~~v------~~~Pt~~~~-~~G~~~~~~~G  112 (128)
T 2o8v_B           89 KYGI------RGIPTLLLF-KNGEVAATKVG  112 (128)
T ss_dssp             GGTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CccCEEEEE-eCCEEEEEEcC
Confidence            7888      688999999 89999986653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.85  E-value=5.2e-09  Score=82.88  Aligned_cols=76  Identities=17%  Similarity=0.188  Sum_probs=60.7

Q ss_pred             ccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178        265 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  344 (384)
Q Consensus       265 l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  344 (384)
                      +++.+||+++|+|| ++||++|....|.++++.+++   ++.++.|+.|.                            ..
T Consensus        28 l~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~----------------------------~~   75 (117)
T 2xc2_A           28 LEQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK----------------------------LE   75 (117)
T ss_dssp             HHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT----------------------------SH
T ss_pred             HHhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc----------------------------cH
Confidence            34457899999999 999999999999999998876   68888888752                            23


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+.++||+      ..+|+++++ ++|+++..+..
T Consensus        76 ~~~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  103 (117)
T 2xc2_A           76 ETARKYNI------SAMPTFIAI-KNGEKVGDVVG  103 (117)
T ss_dssp             HHHHHTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HHHHHcCC------CccceEEEE-eCCcEEEEEeC
Confidence            56778998      678875555 79999887654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.85  E-value=1e-08  Score=78.75  Aligned_cols=73  Identities=16%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||+.|....|.++++.+++++  +.++.|+.|.                            +..+.+
T Consensus        15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~----------------------------~~~~~~   63 (104)
T 2e0q_A           15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE----------------------------NPDIAA   63 (104)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999988854  8898888753                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+++++ ++|+++..+..
T Consensus        64 ~~~v------~~~Pt~~~~-~~g~~~~~~~g   87 (104)
T 2e0q_A           64 RYGV------MSLPTVIFF-KDGEPVDEIIG   87 (104)
T ss_dssp             HTTC------CSSCEEEEE-ETTEEEEEEES
T ss_pred             hCCc------cccCEEEEE-ECCeEhhhccC
Confidence            8988      678998888 79999886653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=9.2e-09  Score=82.56  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +++ ++|+|| ++||++|....|.+.++++++++.++.++.|+.|.                            +..+.+
T Consensus        22 ~~~-vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~~~   71 (126)
T 1x5e_A           22 EGD-WMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE----------------------------QPGLSG   71 (126)
T ss_dssp             SSE-EEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC----------------------------CHHHHH
Confidence            444 899999 99999999999999999999987679999888662                            134678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .|++      ..+|+++++ ++|++
T Consensus        72 ~~~v------~~~Pt~~~~-~~G~~   89 (126)
T 1x5e_A           72 RFII------NALPTIYHC-KDGEF   89 (126)
T ss_dssp             HTTC------CSSSEEEEE-ETTEE
T ss_pred             HcCC------cccCEEEEE-eCCeE
Confidence            8998      688999999 79996

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.84  E-value=1e-08  Score=81.09  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||+.|....|.++++.+++++  +.++.|+.|.                            +..+.+
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~----------------------------~~~l~~   77 (114)
T 2oe3_A           29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE----------------------------SPDIAK   77 (114)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CHHHHH
Confidence            5899999999 99999999999999999988753  8888888763                            134677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+++++ ++|+++..+..
T Consensus        78 ~~~v------~~~Pt~~~~-~~G~~~~~~~G  101 (114)
T 2oe3_A           78 ECEV------TAMPTFVLG-KDGQLIGKIIG  101 (114)
T ss_dssp             HTTC------CSBSEEEEE-ETTEEEEEEES
T ss_pred             HCCC------CcccEEEEE-eCCeEEEEEeC
Confidence            8888      678886554 89999886654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=5.6e-10  Score=90.22  Aligned_cols=87  Identities=13%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             ceEEccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcccee
Q psy17178         71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  147 (384)
Q Consensus        71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  147 (384)
                      +.+++++.+||+++|.|| ++|||+|+...|.+   .++.+.++ .++.++.|..|.                       
T Consensus        18 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~-----------------------   72 (130)
T 2kuc_A           18 EALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK-----------------------   72 (130)
T ss_dssp             HHHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS-----------------------
T ss_pred             HHHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC-----------------------
Confidence            456667778999999999 99999999999998   55544443 345666665543                       


Q ss_pred             EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        148 LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       148 ~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                         |...++++.||+        .+   .|+++++|++|++.....|..
T Consensus        73 ---~~~~~~~~~~~v--------~~---~Pt~~~~d~~G~~~~~~~G~~  107 (130)
T 2kuc_A           73 ---GEGVELRKKYGV--------HA---YPTLLFINSSGEVVYRLVGAE  107 (130)
T ss_dssp             ---TTHHHHHHHTTC--------CS---SCEEEEECTTSCEEEEEESCC
T ss_pred             ---cchHHHHHHcCC--------CC---CCEEEEECCCCcEEEEecCCC
Confidence               234567788888        22   357789999999976555543

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.83  E-value=1.2e-08  Score=78.52  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      ++..||+++|+|| ++||+.|....|.++++.++++  ++.++.|+.|.                            ...
T Consensus        15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~   63 (104)
T 2vim_A           15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ----------------------------NEE   63 (104)
T ss_dssp             HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC----------------------------CHH
Confidence            3447899999999 9999999999999999998874  78999988762                            135


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+.|++      ...|+.+++ ++|+++..+..
T Consensus        64 ~~~~~~v------~~~Pt~~~~-~~g~~~~~~~G   90 (104)
T 2vim_A           64 AAAKYSV------TAMPTFVFI-KDGKEVDRFSG   90 (104)
T ss_dssp             HHHHTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HHHHcCC------ccccEEEEE-eCCcEEEEEeC
Confidence            6778888      678886666 59999886654

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.83  E-value=2.4e-09  Score=86.82  Aligned_cols=81  Identities=9%  Similarity=0.007  Sum_probs=58.7

Q ss_pred             cceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        259 QLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       259 ~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      +++.+...-. .+|+++|+|| ++||++|....|.|+++++++++ .++.++.|+.+..                     
T Consensus        13 ~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~---------------------   70 (133)
T 2dj3_A           13 VGKTFDAIVMDPKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN---------------------   70 (133)
T ss_dssp             CTTTCCCCCTCTTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS---------------------
T ss_pred             cCCCHHHHhccCCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC---------------------
Confidence            4444443333 4899999999 99999999999999999999975 3577777765421                     


Q ss_pred             eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                             ..+.+.|++      ..+|++++++++|++.
T Consensus        71 -------~~~~~~~~v------~~~Pt~~~~~~g~~~~   95 (133)
T 2dj3_A           71 -------DITNDQYKV------EGFPTIYFAPSGDKKN   95 (133)
T ss_dssp             -------CCCCSSCCC------SSSSEEEEECTTCTTS
T ss_pred             -------HHHHhhcCC------CcCCEEEEEeCCCccc
Confidence                   011235777      6789999998776554

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.83  E-value=9.3e-09  Score=80.54  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        268 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       268 ~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      ..||+++|+|| ++||+.|....|.++++.++++  ++.++.|+.|.                            ...+.
T Consensus        24 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~   72 (113)
T 1ti3_A           24 GSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE----------------------------LKAVA   72 (113)
T ss_dssp             TSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------CHHHH
T ss_pred             hcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc----------------------------cHHHH
Confidence            45899999999 9999999999999999998874  68888888753                            23567


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.||+      ..+|+++++ ++|+++..+..
T Consensus        73 ~~~~v------~~~Pt~~~~-~~G~~~~~~~g   97 (113)
T 1ti3_A           73 EEWNV------EAMPTFIFL-KDGKLVDKTVG   97 (113)
T ss_dssp             HHHHC------SSTTEEEEE-ETTEEEEEEEC
T ss_pred             HhCCC------CcccEEEEE-eCCEEEEEEec
Confidence            78888      678887777 69999887654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.33  E-value=3.9e-10  Score=91.20  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      .+.++++..+||+++|+|| ++||++|+...|.+   +++.+.+++ ++.++.|+.|+.                     
T Consensus         9 ~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------   65 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP---------------------   65 (130)
Confidence            5677888889999999999 99999999999999   888877653 467777766532                     


Q ss_pred             eEEecCchHHHHHhCceecCCCceeeEEEEEeC-CceE--EEEEe
Q psy17178        337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECY-KMVI--VYWFE  378 (384)
Q Consensus       337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~-~G~i--~~~~~  378 (384)
                           ....+.+.|++      ..+|+++++|+ +|++  +..+.
T Consensus        66 -----~~~~~~~~~~v------~~~Pt~~~~d~~~G~~~~~~~~~   99 (130)
T 2lst_A           66 -----EGQELARRYRV------PGTPTFVFLVPKAGAWEEVGRLF   99 (130)
Confidence                 12345667887      67888888885 5887  55443

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.82  E-value=7.4e-09  Score=83.48  Aligned_cols=74  Identities=12%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|+...|.++++.+++++ .+.++.|+.|.                            +..+.+
T Consensus        34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~   83 (130)
T 2dml_A           34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNADK----------------------------HQSLGG   83 (130)
T ss_dssp             CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 37888877542                            246778


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .|++      ..+|++++++++|+++..+.
T Consensus        84 ~~~v------~~~Pt~~~~~~~~~~~~~~~  107 (130)
T 2dml_A           84 QYGV------QGFPTIKIFGANKNKPEDYQ  107 (130)
T ss_dssp             HHTC------CSSSEEEEESSCTTSCEECC
T ss_pred             HcCC------CccCEEEEEeCCCCeEEEee
Confidence            8998      68899999998887444443

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.81  E-value=7.9e-09  Score=81.23  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   65 (112)
T 2voc_A           16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE----------------------------NQETAG   65 (112)
T ss_dssp             SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CCSHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence            6899999999 99999999999999999999864 68888888653                            124677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .||+        .+   .|+++++ ++|++.....|..
T Consensus        66 ~~~v--------~~---~Pt~~~~-~~G~~~~~~~G~~   91 (112)
T 2voc_A           66 KYGV--------MS---IPTLLVL-KDGEVVETSVGFK   91 (112)
T ss_dssp             HTTC--------CS---BSEEEEE-ETTEEEEEEESCC
T ss_pred             HcCC--------Cc---ccEEEEE-eCCEEEEEEeCCC
Confidence            8888        22   3456677 8999876555544

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.81  E-value=1.1e-09  Score=93.07  Aligned_cols=48  Identities=15%  Similarity=0.094  Sum_probs=41.8

Q ss_pred             EccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         74 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        74 ~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++||++||+|| ++|||+|+.++|.|.++++++.  ++.++.|+.|.
T Consensus        48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~   95 (167)
T 1z6n_A           48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGR   95 (167)
T ss_dssp             HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHH
T ss_pred             HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCC
Confidence            466788999999999 9999999999999999998763  68888887764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.80  E-value=1.5e-08  Score=79.53  Aligned_cols=73  Identities=7%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||+++|+|| ++||+.|....|.++++.++++  ++.++.|+.|..                            ..+.+
T Consensus        25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~----------------------------~~~~~   73 (112)
T 1syr_A           25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEV----------------------------SEVTE   73 (112)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTT----------------------------HHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCC----------------------------HHHHH
Confidence            6899999999 9999999999999999998874  588998887632                            25677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|++++ .++|+++..+..
T Consensus        74 ~~~v------~~~Pt~~~-~~~G~~~~~~~G   97 (112)
T 1syr_A           74 KENI------TSMPTFKV-YKNGSSVDTLLG   97 (112)
T ss_dssp             HTTC------CSSSEEEE-EETTEEEEEEES
T ss_pred             HcCC------CcccEEEE-EECCcEEEEEeC
Confidence            8888      67887544 469999886653

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.80  E-value=1.8e-08  Score=78.63  Aligned_cols=74  Identities=8%  Similarity=0.050  Sum_probs=61.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            ...+.+
T Consensus        21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   70 (111)
T 3gnj_A           21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE----------------------------EKTLFQ   70 (111)
T ss_dssp             SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc----------------------------ChhHHH
Confidence            5789999999 99999999999999999998864 48888888752                            135677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+++++ ++|+++..+..
T Consensus        71 ~~~v------~~~Pt~~~~-~~g~~~~~~~g   94 (111)
T 3gnj_A           71 RFSL------KGVPQILYF-KDGEYKGKMAG   94 (111)
T ss_dssp             HTTC------CSSCEEEEE-ETTEEEEEEES
T ss_pred             hcCC------CcCCEEEEE-ECCEEEEEEec
Confidence            8888      688998888 68998876663

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.80  E-value=1.6e-08  Score=81.47  Aligned_cols=73  Identities=14%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++|++||+|| ++||++|....|.++++.+++  .++.++.|+.|.                            ...+.+
T Consensus        36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~d~----------------------------~~~l~~   84 (125)
T 1r26_A           36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEF--PTVKFAKVDADN----------------------------NSEIVS   84 (125)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHC--TTSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHC--CCCEEEEEECCC----------------------------CHHHHH
Confidence            6899999999 999999999999999999888  368999998863                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        85 ~~~v------~~~Pt~~i~-~~G~~~~~~~G  108 (125)
T 1r26_A           85 KCRV------LQLPTFIIA-RSGKMLGHVIG  108 (125)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CcccEEEEE-eCCeEEEEEeC
Confidence            8998      678885555 89999886654

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.80  E-value=1.9e-08  Score=77.91  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   66 (109)
T 2yzu_A           17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE----------------------------NPKTAM   66 (109)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC----------------------------CHhHHH
Confidence            5789999999 99999999999999999998864 48888888763                            134677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        67 ~~~v------~~~Pt~~~~-~~g~~~~~~~g   90 (109)
T 2yzu_A           67 RYRV------MSIPTVILF-KDGQPVEVLVG   90 (109)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             hCCC------CcCCEEEEE-eCCcEeeeEeC
Confidence            8888      678999888 79999886653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.80  E-value=1.6e-08  Score=82.89  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||+.|....|.+.++.+++++ ++.++.|+.|..                            ..+.+
T Consensus        23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~----------------------------~~l~~   72 (140)
T 3hz4_A           23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATN----------------------------PWTAE   72 (140)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTC----------------------------HHHHH
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcC----------------------------HhHHH
Confidence            4799999999 99999999999999999999875 388888886532                            35677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        73 ~~~v------~~~Pt~~~~-~~G~~~~~~~G   96 (140)
T 3hz4_A           73 KYGV------QGTPTFKFF-CHGRPVWEQVG   96 (140)
T ss_dssp             HHTC------CEESEEEEE-ETTEEEEEEES
T ss_pred             HCCC------CcCCEEEEE-eCCcEEEEEcC
Confidence            8998      688976666 79999886653

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.79  E-value=7.8e-09  Score=85.25  Aligned_cols=71  Identities=8%  Similarity=-0.007  Sum_probs=57.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||++|+.+.|.++++++++++ ++.++.|+.|...                            .+.+
T Consensus        22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~----------------------------~~~~   71 (142)
T 1qgv_A           22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVP----------------------------DFNK   71 (142)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCC----------------------------TTTT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccCH----------------------------HHHH
Confidence            4899999999 99999999999999999999854 4889999887321                            2355


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      +|++      ...|++++++ +|+++..
T Consensus        72 ~~~i------~~~Pt~~~~~-~G~~v~~   92 (142)
T 1qgv_A           72 MYEL------YDPCTVMFFF-RNKHIMI   92 (142)
T ss_dssp             SSCS------CSSCEEEEEE-TTEEEEE
T ss_pred             HcCC------CCCCEEEEEE-CCcEEEE
Confidence            6888      6789888885 7888764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.79  E-value=1.3e-08  Score=80.30  Aligned_cols=73  Identities=15%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.++++.++++  ++.++.|+.|.                            ...+.+
T Consensus        27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~~~~   75 (118)
T 2vm1_A           27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE----------------------------LKDVAE   75 (118)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc----------------------------CHHHHH
Confidence            4899999999 9999999999999999998875  68888888752                            235677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+++++ ++|+++..+..
T Consensus        76 ~~~v------~~~Pt~~~~-~~g~~~~~~~g   99 (118)
T 2vm1_A           76 AYNV------EAMPTFLFI-KDGEKVDSVVG   99 (118)
T ss_dssp             HTTC------CSBSEEEEE-ETTEEEEEEES
T ss_pred             HcCC------CcCcEEEEE-eCCeEEEEecC
Confidence            8888      678886666 79999886654

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.79  E-value=9.5e-09  Score=80.57  Aligned_cols=73  Identities=7%  Similarity=0.058  Sum_probs=59.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++|+++|+|| ++||++|....|.++++.+++.  ++.++.|+.|.                            ...+.+
T Consensus        18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~~   66 (110)
T 2l6c_A           18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA----------------------------RPELMK   66 (110)
T ss_dssp             TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG----------------------------CHHHHH
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC----------------------------CHHHHH
Confidence            5689999999 9999999999999999887763  57777776542                            245678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +||+      ..+|+++++ ++|+++..+..
T Consensus        67 ~~~v------~~~Pt~~~~-~~G~~v~~~~G   90 (110)
T 2l6c_A           67 ELGF------ERVPTLVFI-RDGKVAKVFSG   90 (110)
T ss_dssp             HTTC------CSSCEEEEE-ESSSEEEEEES
T ss_pred             HcCC------cccCEEEEE-ECCEEEEEEcC
Confidence            8998      688999998 79999886653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.79  E-value=6.2e-09  Score=85.10  Aligned_cols=73  Identities=10%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      .+|++||+|| ++||++|+...|.+.++++++++.+  +.++.|+.+.                            +..+
T Consensus        33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~   83 (140)
T 2dj1_A           33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS----------------------------ASML   83 (140)
T ss_dssp             TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT----------------------------CHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc----------------------------cHHH
Confidence            5799999999 9999999999999999999998764  6666665432                            2467


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .+.|++      ..+|+++++ ++|+ +..+.
T Consensus        84 ~~~~~v------~~~Pt~~~~-~~G~-~~~~~  107 (140)
T 2dj1_A           84 ASKFDV------SGYPTIKIL-KKGQ-AVDYD  107 (140)
T ss_dssp             HHHTTC------CSSSEEEEE-ETTE-EEECC
T ss_pred             HHHCCC------CccCeEEEE-ECCc-EEEcC
Confidence            788998      688999999 6898 44343

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.78  E-value=4.4e-10  Score=95.20  Aligned_cols=95  Identities=9%  Similarity=0.001  Sum_probs=65.9

Q ss_pred             CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCcc
Q psy17178        247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR  326 (384)
Q Consensus       247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~  326 (384)
                      .+++...++   + +.++....+||++||+|| ++||++|+.+.|.|+++.+.++. ++.++.|++|.....      . 
T Consensus        27 ~~~i~w~~~---~-~~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~------~-   93 (164)
T 1sen_A           27 GDHIHWRTL---E-DGKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEP------K-   93 (164)
T ss_dssp             CTTSCBCCH---H-HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSC------S-
T ss_pred             cccccccCH---H-HHHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchH------H-
Confidence            444554433   3 457777778999999999 99999999999999998766543 467788887643210      0 


Q ss_pred             ccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        327 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       327 ~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                                          .+.|++.    +..+|+++++|++|+++..+.
T Consensus        94 --------------------~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~  121 (164)
T 1sen_A           94 --------------------DEDFSPD----GGYIPRILFLDPSGKVHPEII  121 (164)
T ss_dssp             --------------------CGGGCTT----CSCSSEEEEECTTSCBCTTCC
T ss_pred             --------------------HHHhccc----CCcCCeEEEECCCCCEEEEEe
Confidence                                1123331    135899999999999886544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.75  E-value=1.3e-08  Score=80.66  Aligned_cols=77  Identities=10%  Similarity=0.054  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++|||+|+...|.++++.++++   ..++.++++.....                      +....+.+
T Consensus        28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~----------------------~~~~~~~~   81 (118)
T 1zma_A           28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL----------------------NDLQAFRS   81 (118)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH----------------------HHHHHHHH
T ss_pred             CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH----------------------HHHHHHHH
Confidence            5789999999 9999999999999999998774   45667777643211                      11245678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .||+      ..+|++++++ +|+++..+.
T Consensus        82 ~~~i------~~~Pt~~~~~-~G~~~~~~~  104 (118)
T 1zma_A           82 RYGI------PTVPGFVHIT-DGQINVRCD  104 (118)
T ss_dssp             HHTC------CSSCEEEEEE-TTEEEEECC
T ss_pred             HcCC------CCCCeEEEEE-CCEEEEEec
Confidence            8999      6889988885 899887554

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.75  E-value=3.4e-08  Score=76.06  Aligned_cols=74  Identities=9%  Similarity=0.062  Sum_probs=59.3

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|.                            +..+.+
T Consensus        17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   66 (105)
T 1fb6_A           17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------APGIAT   66 (105)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------hHHHHH
Confidence            4789999999 99999999999999999998864 38888887663                            135677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+.+++ ++|+++..+..
T Consensus        67 ~~~v------~~~Pt~~~~-~~g~~~~~~~G   90 (105)
T 1fb6_A           67 QYNI------RSIPTVLFF-KNGERKESIIG   90 (105)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEEE
T ss_pred             hCCC------CcccEEEEE-eCCeEEEEEec
Confidence            8888      678876555 69999886653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.74  E-value=5.9e-09  Score=86.32  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=51.6

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .|.++|+....++   +++.+...-..||+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|
T Consensus        31 ~~~~~~~~~v~~l---~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~   96 (148)
T 3p2a_A           31 CGHSLFDGEVINA---TAETLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTE   96 (148)
T ss_dssp             TCCBTTCCCCEEC---CTTTHHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETT
T ss_pred             cCCccccCCceec---CHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECc
Confidence            4667777777665   55555433346799999999 99999999999999999999864 4888888765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.74  E-value=5.4e-09  Score=82.86  Aligned_cols=78  Identities=15%  Similarity=0.138  Sum_probs=57.8

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      +++.+||+++|.|| ++||++|+...|.+.++.+++++  +.++.|+.|.                            ..
T Consensus        26 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~----------------------------~~   74 (116)
T 3qfa_C           26 LDAAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD----------------------------CQ   74 (116)
T ss_dssp             HHHHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT----------------------------TH
T ss_pred             HHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CH
Confidence            44457899999999 99999999999999999988754  8888887653                            23


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++++.||+        .+++   +++++ ++|++.....|.
T Consensus        75 ~l~~~~~v--------~~~P---t~~~~-~~G~~~~~~~G~  103 (116)
T 3qfa_C           75 DVASECEV--------KSMP---TFQFF-KKGQKVGEFSGA  103 (116)
T ss_dssp             HHHHHTTC--------CSSS---EEEEE-SSSSEEEEEESC
T ss_pred             HHHHHcCC--------cccc---EEEEE-eCCeEEEEEcCC
Confidence            56777887        3333   33344 889887655554

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.73  E-value=1.2e-08  Score=81.55  Aligned_cols=78  Identities=15%  Similarity=0.202  Sum_probs=59.0

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  155 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  155 (384)
                      .+.+||+++|.|| ++|||+|+...|.+.++.++++  ++.++.|+.+.                           ...+
T Consensus        33 ~~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------~~~~   82 (124)
T 1faa_A           33 KAAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT   82 (124)
T ss_dssp             HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred             HhcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------chHH
Confidence            3446899999999 9999999999999999998875  58888887652                           1245


Q ss_pred             hHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        156 ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      +++.||+        ++++    +++++++|++.....|.
T Consensus        83 ~~~~~~v--------~~~P----t~~~~~~G~~~~~~~G~  110 (124)
T 1faa_A           83 LAKELGI--------RVVP----TFKILKENSVVGEVTGA  110 (124)
T ss_dssp             HHHHHCC--------SSSS----EEEEEETTEEEEEEESS
T ss_pred             HHHHcCC--------Ceee----EEEEEeCCcEEEEEcCC
Confidence            7778888        3333    25677899887655554

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.7e-08  Score=79.08  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +||+++|.|| ++|||+|+...|.+.++.++++..++.++.|+.|.
T Consensus        20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~   64 (112)
T 3d6i_A           20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE   64 (112)
T ss_dssp             TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc
Confidence            4789999999 99999999999999999998765678888888764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.72  E-value=5.1e-09  Score=85.60  Aligned_cols=82  Identities=12%  Similarity=0.130  Sum_probs=61.1

Q ss_pred             ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEe
Q psy17178         71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  150 (384)
Q Consensus        71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  150 (384)
                      +.+++++.+||+++|.|| ++||++|+...|.++++.+++  .++.++.|+.|.                          
T Consensus        37 ~~~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~v~~~~--------------------------   87 (139)
T 3d22_A           37 QKLSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENY--PSLMFLVIDVDE--------------------------   87 (139)
T ss_dssp             HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT--------------------------
T ss_pred             HHHHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCcc--------------------------
Confidence            345555567999999999 999999999999999999887  368888888763                          


Q ss_pred             eCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        151 DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       151 D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                        ..++++.||+        .+   .|+++++ ++|++.....|.
T Consensus        88 --~~~~~~~~~v--------~~---~Pt~~~~-~~G~~~~~~~G~  118 (139)
T 3d22_A           88 --LSDFSASWEI--------KA---TPTFFFL-RDGQQVDKLVGA  118 (139)
T ss_dssp             --SHHHHHHTTC--------CE---ESEEEEE-ETTEEEEEEESC
T ss_pred             --cHHHHHHcCC--------Cc---ccEEEEE-cCCeEEEEEeCC
Confidence              2357777888        23   3344444 899987655554

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.72  E-value=1.6e-08  Score=81.11  Aligned_cols=80  Identities=13%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             cccCCCeEEEEEEeCC-------CCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178        266 SDYYGKYLVFFFYPLD-------FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  338 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~-------~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  338 (384)
                      .+.+||+++|+|| ++       ||++|....|.++++++++++ ++.++.|++++..   .|.                
T Consensus        20 ~~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~~----------------   78 (123)
T 1wou_A           20 EQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YWK----------------   78 (123)
T ss_dssp             HTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HHH----------------
T ss_pred             HHhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hhh----------------
Confidence            3345899999999 99       999999999999999987753 6899999987532   222                


Q ss_pred             EecCchHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        339 LSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       339 ~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                        |....+.+.|++      ..+|+++++++.+++.
T Consensus        79 --d~~~~~~~~~~i------~~~Pt~~~~~~~~~~~  106 (123)
T 1wou_A           79 --DPNNDFRKNLKV------TAVPTLLKYGTPQKLV  106 (123)
T ss_dssp             --CTTCHHHHHHCC------CSSSEEEETTSSCEEE
T ss_pred             --chhHHHHHHCCC------CeeCEEEEEcCCceEe
Confidence              334567888999      7899999998755554

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.71  E-value=7.3e-09  Score=91.18  Aligned_cols=91  Identities=10%  Similarity=0.037  Sum_probs=70.1

Q ss_pred             CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccc
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRK  327 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~  327 (384)
                      ++..+.++   +++.+.....+||+++|+|| ++||++|....|.++++.+++++ .+.++.|+.|..            
T Consensus        95 ~~~~v~~l---~~~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~------------  157 (210)
T 3apq_A           95 DDPEIITL---ERREFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDD------------  157 (210)
T ss_dssp             TCTTSEEC---CHHHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTC------------
T ss_pred             CCCceEEe---cHHHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCcc------------
Confidence            34445544   66666555567899999999 99999999999999999998854 488888886532            


Q ss_pred             cCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        328 EGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       328 ~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                                      ..+.+.|++      ..+|+++++ ++|+++..+.
T Consensus       158 ----------------~~l~~~~~v------~~~Pt~~~~-~~G~~~~~~~  185 (210)
T 3apq_A          158 ----------------RMLCRMKGV------NSYPSLFIF-RSGMAAVKYN  185 (210)
T ss_dssp             ----------------HHHHHHTTC------CSSSEEEEE-CTTSCCEECC
T ss_pred             ----------------HHHHHHcCC------CcCCeEEEE-ECCCceeEec
Confidence                            256777888      678988888 8999877555

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.71  E-value=1.1e-09  Score=92.83  Aligned_cols=62  Identities=11%  Similarity=0.088  Sum_probs=46.7

Q ss_pred             CCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         57 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        57 aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++...++   + +.+++...+||++||+|| ++|||+|+.++|.|.++.+.++. ++.++.|+.|.
T Consensus        27 ~~~i~w~~~---~-~~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~   88 (164)
T 1sen_A           27 GDHIHWRTL---E-DGKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLED   88 (164)
T ss_dssp             CTTSCBCCH---H-HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEG
T ss_pred             cccccccCH---H-HHHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecC
Confidence            344544444   3 556677778999999999 99999999999999998765543 46677777664

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.70  E-value=6.7e-08  Score=76.59  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .||+++|+|| ++||+.|....|.++++.+++++ ++.++.|+.|.                            ...+.+
T Consensus        29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   78 (121)
T 2i1u_A           29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT----------------------------NPETAR   78 (121)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 48888888763                            134677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+++++ ++|+++..+..
T Consensus        79 ~~~i------~~~Pt~~~~-~~g~~~~~~~G  102 (121)
T 2i1u_A           79 NFQV------VSIPTLILF-KDGQPVKRIVG  102 (121)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             hcCC------CcCCEEEEE-ECCEEEEEecC
Confidence            8888      678887776 59999886653

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.70  E-value=2.4e-08  Score=77.75  Aligned_cols=75  Identities=12%  Similarity=0.050  Sum_probs=58.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      ++|+++|+|| ++||++|....|.++++.+++.+.  ++.++.|+.|.                            +..+
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~l   70 (111)
T 3uvt_A           20 AEGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA----------------------------ERNI   70 (111)
T ss_dssp             HSSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT----------------------------CHHH
T ss_pred             cCCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc----------------------------cHhH
Confidence            3789999999 999999999999999999876543  57777777552                            1346


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+.|++      ..+|+++++ ++|+++..+..
T Consensus        71 ~~~~~v------~~~Pt~~~~-~~g~~~~~~~g   96 (111)
T 3uvt_A           71 CSKYSV------RGYPTLLLF-RGGKKVSEHSG   96 (111)
T ss_dssp             HHHTTC------CSSSEEEEE-ETTEEEEEECS
T ss_pred             HHhcCC------CcccEEEEE-eCCcEEEeccC
Confidence            778888      678887766 68998886653

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.70  E-value=7.8e-09  Score=82.38  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             CCCCCCccEEEeeecCccceEEcccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  130 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~  130 (384)
                      .|.+.|.+...+.   +.-.-.+.+.  .||+++|.|| ++|||+|+...|.|.++.+++.+  +.++.|+.|.      
T Consensus         8 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~------   75 (122)
T 2vlu_A            8 AAVAAEVISVHSL---EQWTMQIEEANTAKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE------   75 (122)
T ss_dssp             ----CCCEEECSH---HHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT------
T ss_pred             cCCCCcceeccCH---HHHHHHHHHhhccCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC------
Confidence            5666677765332   2222223332  5889999999 99999999999999999988753  8888887754      


Q ss_pred             hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                                            ..++++.||+        ++++   + +++.++|++.....|.
T Consensus        76 ----------------------~~~~~~~~~v--------~~~P---t-~~~~~~G~~~~~~~G~  106 (122)
T 2vlu_A           76 ----------------------LKPIAEQFSV--------EAMP---T-FLFMKEGDVKDRVVGA  106 (122)
T ss_dssp             ----------------------CHHHHHHTTC--------CSSS---E-EEEEETTEEEEEEESS
T ss_pred             ----------------------CHHHHHHcCC--------Cccc---E-EEEEeCCEEEEEEeCc
Confidence                                  2346777887        3333   2 4555899886544443

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.69  E-value=7.6e-09  Score=84.24  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=38.7

Q ss_pred             ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         69 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        69 ~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ++-.-.+++.+||++||.|| ++||++|+...|.|.++.+++   ++.++.|+.|
T Consensus        29 ~~~~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~   79 (133)
T 3cxg_A           29 GSLNQVFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVD   79 (133)
T ss_dssp             THHHHHHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETT
T ss_pred             hHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEecc
Confidence            33334456777899999999 999999999999998887665   4666666644

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.15  E-value=1.9e-09  Score=87.06  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             cceEEccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccce
Q psy17178         70 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  146 (384)
Q Consensus        70 g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~  146 (384)
                      .+.+++...+||+++|+|| ++|||+|+...|.+   .++.+.++. ++.++.|+.|..                     
T Consensus         9 ~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------   65 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP---------------------   65 (130)
Confidence            4567788888999999999 99999999999998   777776643 466666655431                     


Q ss_pred             eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEec-CCCc--ccccceee
Q psy17178        147 PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYAL-TSPV--NGYAGGAL  196 (384)
Q Consensus       147 p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~-~G~v--~~~~~g~~  196 (384)
                           ...++++.||+           ...|+++++|+ +|++  .....|..
T Consensus        66 -----~~~~~~~~~~v-----------~~~Pt~~~~d~~~G~~~~~~~~~G~~  102 (130)
T 2lst_A           66 -----EGQELARRYRV-----------PGTPTFVFLVPKAGAWEEVGRLFGSR  102 (130)
Confidence                 12345666777           33567788996 5888  65566654

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.69  E-value=2.3e-08  Score=80.25  Aligned_cols=74  Identities=14%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhH
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  157 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  157 (384)
                      .+||+++|.|| ++|||+|+...|.|.++.+++.  ++.++.|+.|.                            ..+++
T Consensus        36 ~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~   84 (124)
T 1xfl_A           36 ESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVA   84 (124)
T ss_dssp             HTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHH
T ss_pred             hcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHH
Confidence            46899999999 9999999999999999998874  68888887642                            23567


Q ss_pred             HhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        158 LDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       158 ~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +.||+        .+++   + +++.++|++.....|
T Consensus        85 ~~~~v--------~~~P---t-~~~~~~G~~~~~~~G  109 (124)
T 1xfl_A           85 SDWAI--------QAMP---T-FMFLKEGKILDKVVG  109 (124)
T ss_dssp             HHTTC--------CSSS---E-EEEEETTEEEEEEES
T ss_pred             HHcCC--------CccC---E-EEEEECCEEEEEEeC
Confidence            78888        3333   2 455589988765555

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.68  E-value=3.6e-08  Score=87.58  Aligned_cols=74  Identities=11%  Similarity=0.132  Sum_probs=60.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++|+++|+|| ++||++|+.+.|.+++++++++++ +.++.|+.|..                            ..+.+
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~----------------------------~~l~~   78 (222)
T 3dxb_A           29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQN----------------------------PGTAP   78 (222)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTC----------------------------TTTGG
T ss_pred             cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCCC----------------------------HHHHH
Confidence            5789999999 999999999999999999998754 88999987631                            12356


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|++++++ +|+++..+..
T Consensus        79 ~~~v------~~~Pt~~~~~-~G~~~~~~~G  102 (222)
T 3dxb_A           79 KYGI------RGIPTLLLFK-NGEVAATKVG  102 (222)
T ss_dssp             GGTC------CSBSEEEEEE-TTEEEEEEES
T ss_pred             HcCC------CcCCEEEEEE-CCeEEEEecc
Confidence            7888      6788877775 8999886653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.68  E-value=2.3e-08  Score=81.54  Aligned_cols=70  Identities=13%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|.|| ++||++|+...|.|.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   86 (136)
T 2l5l_A           37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK----------------------------EQELAG   86 (136)
T ss_dssp             CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------CHHHHH
Confidence            3689999999 99999999999999999998864 48888887653                            125677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                      .||+        .   ..|+++++|++|++.
T Consensus        87 ~~~v--------~---~~Pt~~~~~~~G~~~  106 (136)
T 2l5l_A           87 AFGI--------R---SIPSILFIPMEGKPE  106 (136)
T ss_dssp             HTTC--------C---SSCEEEEECSSSCCE
T ss_pred             HcCC--------C---CCCEEEEECCCCcEE
Confidence            7887        2   235678999999986

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.68  E-value=3.1e-08  Score=78.83  Aligned_cols=69  Identities=12%  Similarity=0.049  Sum_probs=56.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|..                            ..+.+
T Consensus        20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~   69 (122)
T 3aps_A           20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAY----------------------------PQTCQ   69 (122)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC----------------------------HHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCC----------------------------HHHHH
Confidence            5789999999 99999999999999999999865 588988887632                            24567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .|++      ..+|++++++++|++
T Consensus        70 ~~~v------~~~Pt~~~~~~~~~~   88 (122)
T 3aps_A           70 KAGI------KAYPSVKLYQYERAK   88 (122)
T ss_dssp             HTTC------CSSSEEEEEEEEGGG
T ss_pred             HcCC------CccceEEEEeCCCcc
Confidence            7888      678888888877764

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.68  E-value=2.4e-08  Score=77.80  Aligned_cols=78  Identities=17%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      +++..+|+++|.|| ++||++|+...|.+.++.+++.  ++.++.|+.|.                            ..
T Consensus        15 l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~----------------------------~~   63 (105)
T 3zzx_A           15 LNEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDE----------------------------CE   63 (105)
T ss_dssp             HHHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTT----------------------------CH
T ss_pred             HHhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEeccc----------------------------CH
Confidence            34456789999999 9999999999999999988764  46666555432                            34


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ++++.|||        ++++    ++++-++|++.....|.
T Consensus        64 ~l~~~~~V--------~~~P----T~~~~~~G~~v~~~~G~   92 (105)
T 3zzx_A           64 DIAQDNQI--------ACMP----TFLFMKNGQKLDSLSGA   92 (105)
T ss_dssp             HHHHHTTC--------CBSS----EEEEEETTEEEEEEESC
T ss_pred             HHHHHcCC--------Ceec----EEEEEECCEEEEEEeCc
Confidence            57888998        4444    34555899887766663

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.68  E-value=1.5e-08  Score=80.53  Aligned_cols=54  Identities=9%  Similarity=0.030  Sum_probs=43.7

Q ss_pred             cceeeecc-ccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh----CCcEEEEEeCC
Q psy17178        259 QLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVD  313 (384)
Q Consensus       259 ~g~~~~l~-d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~----~~v~vv~Is~d  313 (384)
                      +++.+... ..++|+++|+|| ++||++|+...|.++++.+++++    .++.++.|+.+
T Consensus        13 ~~~~f~~~v~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~   71 (121)
T 2djj_A           13 VAKNYNEIVLDDTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT   71 (121)
T ss_dssp             CTTTTTTSSSCTTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT
T ss_pred             cccCHHHHhhcCCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECc
Confidence            45555443 236899999999 99999999999999999999975    26888888766

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.68  E-value=4.8e-08  Score=78.50  Aligned_cols=70  Identities=7%  Similarity=-0.014  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh----CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  344 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~----~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  344 (384)
                      .+|+++|+|| ++||++|+...|.++++.+++..    .++.++.|+.|.                            ..
T Consensus        32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~----------------------------~~   82 (127)
T 3h79_A           32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK----------------------------YP   82 (127)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT----------------------------CH
T ss_pred             CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc----------------------------cH
Confidence            4799999999 99999999999999999998863    346666666542                            24


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCCceE
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .+.++|++      ..+|+++++++.+++
T Consensus        83 ~l~~~~~v------~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           83 DVIERMRV------SGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             HHHHHTTC------CSSSEEEEECSSCSS
T ss_pred             hHHHhcCC------ccCCEEEEEeCCCCC
Confidence            56788888      688999999877764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.66  E-value=2.4e-08  Score=77.05  Aligned_cols=76  Identities=11%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~   65 (105)
T 1nsw_A           16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTS   65 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------CHHHHH
Confidence            5689999999 99999999999999999988864 48888887653                            134667


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .||+        .+   .|+++++ ++|++.....|..
T Consensus        66 ~~~v--------~~---~Pt~~~~-~~G~~~~~~~G~~   91 (105)
T 1nsw_A           66 QFGI--------MS---IPTLILF-KGGRPVKQLIGYQ   91 (105)
T ss_dssp             HTTC--------CS---SSEEEEE-ETTEEEEEEESCC
T ss_pred             HcCC--------cc---ccEEEEE-eCCeEEEEEecCC
Confidence            7887        22   2455666 8998876555544

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.66  E-value=5.6e-08  Score=86.86  Aligned_cols=81  Identities=10%  Similarity=0.020  Sum_probs=62.1

Q ss_pred             cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcce
Q psy17178        259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  336 (384)
Q Consensus       259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  336 (384)
                      +++.++..-.+||+++|+|| ++||++|+.+.|.+.++++++++.+  +.++.|+.|.                      
T Consensus        21 ~~~~~~~~~~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------   77 (241)
T 3idv_A           21 NDANFDNFVADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS----------------------   77 (241)
T ss_dssp             CTTTHHHHHTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT----------------------
T ss_pred             cccCHHHHHhcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC----------------------
Confidence            44444443447899999999 9999999999999999999998765  6777776542                      


Q ss_pred             eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        337 PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       337 ~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                            +..+.++||+      ..+|++++++ +|+++.
T Consensus        78 ------~~~l~~~~~v------~~~Pt~~~~~-~g~~~~  103 (241)
T 3idv_A           78 ------ASVLASRFDV------SGYPTIKILK-KGQAVD  103 (241)
T ss_dssp             ------CHHHHHHTTC------CSSSEEEEEE-TTEEEE
T ss_pred             ------CHHHHHhcCC------CcCCEEEEEc-CCCccc
Confidence                  2357788998      6889888886 566553

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.66  E-value=2.4e-08  Score=78.12  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=55.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      +||+++|.|| ++||++|+...|.+.++.+++.  ++.++.|+.|.                            ..++++
T Consensus        23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~l~~   71 (109)
T 3f3q_A           23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDE----------------------------LGDVAQ   71 (109)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Confidence            5799999999 9999999999999999999874  47777776542                            234677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .|++        +++   |++++++ +|++.....|.
T Consensus        72 ~~~v--------~~~---Pt~~~~~-~G~~~~~~~G~   96 (109)
T 3f3q_A           72 KNEV--------SAM---PTLLLFK-NGKEVAKVVGA   96 (109)
T ss_dssp             HTTC--------CSS---SEEEEEE-TTEEEEEEESS
T ss_pred             HcCC--------Ccc---CEEEEEE-CCEEEEEEeCC
Confidence            7777        233   3455666 88876655554

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.65  E-value=3.5e-08  Score=79.09  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             CCCeEEEEEEeCCCCc--------------CchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCc
Q psy17178        269 YGKYLVFFFYPLDFTF--------------VCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKL  334 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~--------------~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~  334 (384)
                      +||+++|+|| ++||+              +|....|.++++.+++++ ++.++.|+.|..                   
T Consensus        20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~-------------------   78 (123)
T 1oaz_A           20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-------------------   78 (123)
T ss_dssp             CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSC-------------------
T ss_pred             CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCC-------------------
Confidence            5899999999 99999              999999999999998865 488888887631                   


Q ss_pred             ceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        335 KIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       335 ~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                               ..+.++||+      ..+|+++++ ++|+++..+..
T Consensus        79 ---------~~l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  107 (123)
T 1oaz_A           79 ---------PGTAPKYGI------RGIPTLLLF-KNGEVAATKVG  107 (123)
T ss_dssp             ---------TTTGGGGTC------CBSSEEEEE-ESSSEEEEEES
T ss_pred             ---------HHHHHHcCC------CccCEEEEE-ECCEEEEEEeC
Confidence                     235678998      689999999 89999886653

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.64  E-value=3.3e-08  Score=77.32  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   71 (112)
T 1t00_A           22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE----------------------------NPGTAA   71 (112)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 48888887654                            234677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .||+        .+++   + +++.++|++.....|..
T Consensus        72 ~~~v--------~~~P---t-~~~~~~G~~~~~~~G~~   97 (112)
T 1t00_A           72 KYGV--------MSIP---T-LNVYQGGEVAKTIVGAK   97 (112)
T ss_dssp             HTTC--------CSSS---E-EEEEETTEEEEEEESCC
T ss_pred             hCCC--------Cccc---E-EEEEeCCEEEEEEeCCC
Confidence            7887        3333   2 34458998865555543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.63  E-value=2.4e-08  Score=83.01  Aligned_cols=71  Identities=15%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|++||+|| ++||++|+.+.|.|.++.+++++. +.++.|+.|.                            ..++++
T Consensus        22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~----------------------------~~~l~~   71 (149)
T 3gix_A           22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ----------------------------TAVYTQ   71 (149)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT----------------------------CCHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc----------------------------CHHHHH
Confidence            4799999999 999999999999999999887543 7777776542                            235777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      .|+|        .++   |++ +++++|++...
T Consensus        72 ~~~v--------~~~---Pt~-~~~~~G~~v~~   92 (149)
T 3gix_A           72 YFDI--------SYI---PST-VFFFNGQHMKV   92 (149)
T ss_dssp             HTTC--------CSS---SEE-EEEETTEEEEE
T ss_pred             HcCC--------Ccc---CeE-EEEECCeEEEe
Confidence            8888        232   333 48889988643

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.63  E-value=1.6e-08  Score=84.63  Aligned_cols=75  Identities=12%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .++++||.|| ++||++|+...|.|+++.+++++ ++.++.|+.|.                            ..++++
T Consensus        63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~----------------------------~~~l~~  112 (155)
T 2ppt_A           63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA----------------------------HPAVAG  112 (155)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------STHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------cHHHHH
Confidence            5789999999 99999999999999999999865 48888887753                            125777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .|||        +++   |+++++ ++|++.....|.
T Consensus       113 ~~~i--------~~~---Pt~~~~-~~G~~~~~~~G~  137 (155)
T 2ppt_A          113 RHRI--------QGI---PAFILF-HKGRELARAAGA  137 (155)
T ss_dssp             HTTC--------CSS---SEEEEE-ETTEEEEEEESC
T ss_pred             HcCC--------CcC---CEEEEE-eCCeEEEEecCC
Confidence            8888        233   344555 789887655554

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.62  E-value=5.3e-08  Score=75.38  Aligned_cols=76  Identities=14%  Similarity=0.198  Sum_probs=56.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   67 (107)
T 1dby_A           18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS   67 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 48888887653                            235777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .||+        .+++   ++ ++.++|++.....|..
T Consensus        68 ~~~v--------~~~P---t~-~~~~~G~~~~~~~G~~   93 (107)
T 1dby_A           68 EYGI--------RSIP---TI-MVFKGGKKCETIIGAV   93 (107)
T ss_dssp             HHTC--------CSSC---EE-EEESSSSEEEEEESCC
T ss_pred             HCCC--------CcCC---EE-EEEeCCEEEEEEeCCC
Confidence            8888        2333   33 4448998876555543

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.62  E-value=1.1e-07  Score=77.63  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=59.4

Q ss_pred             cceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeE
Q psy17178        259 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  338 (384)
Q Consensus       259 ~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  338 (384)
                      +++.+...-.+++.++|+|| ++||++|....|.++++.+++++ ++.++.|+.|..                       
T Consensus        39 ~~~~~~~~~~~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-----------------------   93 (140)
T 1v98_A           39 DEKGFAQEVAGAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEH-----------------------   93 (140)
T ss_dssp             ----------CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC-----------------------
T ss_pred             CHHHHHHHHHcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCC-----------------------
Confidence            34444433223434899999 99999999999999999998864 488888887631                       


Q ss_pred             EecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        339 LSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       339 ~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                           ..+.+.|++      ..+|+++++ ++|+++..+..
T Consensus        94 -----~~l~~~~~v------~~~Pt~~~~-~~G~~~~~~~G  122 (140)
T 1v98_A           94 -----PGLAARYGV------RSVPTLVLF-RRGAPVATWVG  122 (140)
T ss_dssp             -----HHHHHHTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             -----HHHHHHCCC------CccCEEEEE-eCCcEEEEEeC
Confidence                 246778888      678988888 69999886653

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.62  E-value=4.6e-08  Score=75.47  Aligned_cols=44  Identities=9%  Similarity=0.144  Sum_probs=38.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++|+++|.|| ++|||+|+...|.+.++.++++++ +.++.|+.|.
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~   61 (106)
T 3die_A           18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE   61 (106)
T ss_dssp             CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT
T ss_pred             cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc
Confidence            6889999999 999999999999999999998653 8888887653

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.62  E-value=6.4e-08  Score=75.82  Aligned_cols=75  Identities=15%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .|++++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~   73 (115)
T 1thx_A           24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP----------------------------NPTTVK   73 (115)
T ss_dssp             CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------CHHHHH
T ss_pred             CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998864 38888887653                            124677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .||+        .+   .|+++++ ++|++.....|.
T Consensus        74 ~~~v--------~~---~Pt~~~~-~~G~~~~~~~g~   98 (115)
T 1thx_A           74 KYKV--------EG---VPALRLV-KGEQILDSTEGV   98 (115)
T ss_dssp             HTTC--------CS---SSEEEEE-ETTEEEEEEESC
T ss_pred             HcCC--------Cc---eeEEEEE-cCCEEEEEecCC
Confidence            7887        22   2455666 899887554443

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.62  E-value=5.6e-08  Score=75.93  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=56.5

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHh
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  159 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  159 (384)
                      ||+++|.|| ++|||+|+...|.|.++.+++++ ++.++.|+.|.                            ..++++.
T Consensus        24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~   73 (112)
T 1ep7_A           24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAEA   73 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHHH
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------hHHHHHH
Confidence            899999999 99999999999999999998864 68888887753                            2356777


Q ss_pred             hcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        160 YGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       160 ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      ||+        ++++   + +++.++|++.....|.
T Consensus        74 ~~v--------~~~P---t-~~~~~~G~~~~~~~G~   97 (112)
T 1ep7_A           74 AGI--------TAMP---T-FHVYKDGVKADDLVGA   97 (112)
T ss_dssp             HTC--------CBSS---E-EEEEETTEEEEEEESC
T ss_pred             cCC--------Cccc---E-EEEEECCeEEEEEcCC
Confidence            887        3333   2 4556899887655554

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.61  E-value=4.3e-08  Score=77.87  Aligned_cols=75  Identities=12%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|+...|.|.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~   79 (119)
T 1w4v_A           30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD----------------------------HTDLAI   79 (119)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------THHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 58888887653                            234777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .|++        .++   |+++++ ++|++.....|.
T Consensus        80 ~~~v--------~~~---Pt~~~~-~~G~~~~~~~G~  104 (119)
T 1w4v_A           80 EYEV--------SAV---PTVLAM-KNGDVVDKFVGI  104 (119)
T ss_dssp             HTTC--------CSS---SEEEEE-ETTEEEEEEESC
T ss_pred             HcCC--------Ccc---cEEEEE-eCCcEEEEEcCC
Confidence            7887        222   345555 899886554443

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=5.3e-08  Score=79.40  Aligned_cols=48  Identities=8%  Similarity=0.095  Sum_probs=40.4

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+-++++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.|.
T Consensus        22 ~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~   69 (137)
T 2dj0_A           22 ERDKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR   69 (137)
T ss_dssp             HHSTTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT
T ss_pred             hcCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc
Confidence            3335679999999 99999999999999999999976678888877654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.59  E-value=3.8e-08  Score=90.67  Aligned_cols=77  Identities=10%  Similarity=0.242  Sum_probs=57.9

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhH
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  157 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  157 (384)
                      -+||+++|+|| ++||++|+...|.+.++.+++++ ++.++.|+.|..                            .+++
T Consensus        24 ~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~   73 (287)
T 3qou_A           24 SMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAE----------------------------QMIA   73 (287)
T ss_dssp             TTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTC----------------------------HHHH
T ss_pred             cCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccC----------------------------HHHH
Confidence            35899999999 99999999999999999999874 488888877631                            2567


Q ss_pred             HhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        158 LDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       158 ~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +.|||        ++++   +++++ ++|++.....|..
T Consensus        74 ~~~~v--------~~~P---t~~~~-~~G~~~~~~~g~~  100 (287)
T 3qou_A           74 AQFGL--------RAIP---TVYLF-QNGQPVDGFQGPQ  100 (287)
T ss_dssp             HTTTC--------CSSS---EEEEE-ETTEEEEEEESCC
T ss_pred             HHcCC--------CCCC---eEEEE-ECCEEEEEeeCCC
Confidence            77887        3333   44555 6888776555543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.59  E-value=7.1e-08  Score=74.51  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=57.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+++++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   68 (107)
T 2i4a_A           19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD----------------------------NPETPN   68 (107)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------CCHHHH
T ss_pred             CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998864 68888887653                            125677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .||+        .+   .|+++++ ++|++.....|.
T Consensus        69 ~~~v--------~~---~Pt~~~~-~~G~~~~~~~G~   93 (107)
T 2i4a_A           69 AYQV--------RS---IPTLMLV-RDGKVIDKKVGA   93 (107)
T ss_dssp             HTTC--------CS---SSEEEEE-ETTEEEEEEESC
T ss_pred             hcCC--------Cc---cCEEEEE-eCCEEEEEecCC
Confidence            7887        22   2455666 899887655554

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.58  E-value=4.7e-08  Score=77.24  Aligned_cols=76  Identities=20%  Similarity=0.278  Sum_probs=56.4

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcc
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  154 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  154 (384)
                      +++.+||+++|.|| ++|||+|+...|.+.++.+++   ++.++.|+.|.                            ..
T Consensus        28 l~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~----------------------------~~   75 (117)
T 2xc2_A           28 LEQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK----------------------------LE   75 (117)
T ss_dssp             HHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT----------------------------SH
T ss_pred             HHhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc----------------------------cH
Confidence            44457899999999 999999999999999988776   68888887652                            23


Q ss_pred             hhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        155 KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       155 ~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      ++++.||+        .+++   + +++.++|++.....|
T Consensus        76 ~~~~~~~v--------~~~P---t-~~~~~~G~~~~~~~G  103 (117)
T 2xc2_A           76 ETARKYNI--------SAMP---T-FIAIKNGEKVGDVVG  103 (117)
T ss_dssp             HHHHHTTC--------CSSS---E-EEEEETTEEEEEEES
T ss_pred             HHHHHcCC--------Cccc---e-EEEEeCCcEEEEEeC
Confidence            46777887        3333   2 455588988765555

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.57  E-value=8.2e-08  Score=74.03  Aligned_cols=47  Identities=23%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++.+||+++|.|| ++|||+|+...|.+.++.++++ .++.++.|+.|
T Consensus        15 l~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~   61 (106)
T 1xwb_A           15 LTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVD   61 (106)
T ss_dssp             HHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETT
T ss_pred             HHhcCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEecc
Confidence            33457899999999 9999999999999999998886 46888888765

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.57  E-value=6.7e-08  Score=74.94  Aligned_cols=75  Identities=16%  Similarity=0.330  Sum_probs=56.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   68 (108)
T 2trx_A           19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP   68 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CTTHHH
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998864 47787777653                            124667


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .||+        .++   |+++++ ++|++.....|.
T Consensus        69 ~~~v--------~~~---Pt~~~~-~~G~~~~~~~G~   93 (108)
T 2trx_A           69 KYGI--------RGI---PTLLLF-KNGEVAATKVGA   93 (108)
T ss_dssp             HTTC--------CSS---SEEEEE-ETTEEEEEEESC
T ss_pred             HcCC--------ccc---CEEEEE-eCCEEEEEEecC
Confidence            7887        232   345566 799887655554

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.57  E-value=6.3e-08  Score=80.65  Aligned_cols=73  Identities=14%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      +||++||.|| ++||++|+...|.+.++.+++  .++.++.|+.|.                            ..++++
T Consensus        31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~l~~   79 (153)
T 2wz9_A           31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKEL--PQVSFVKLEAEG----------------------------VPEVSE   79 (153)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHc--CCeEEEEEECCC----------------------------CHHHHH
Confidence            4899999999 999999999999999999887  368888887653                            125777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      .||+        .+   .|++++++ +|++.....|
T Consensus        80 ~~~v--------~~---~Pt~~~~~-~G~~~~~~~G  103 (153)
T 2wz9_A           80 KYEI--------SS---VPTFLFFK-NSQKIDRLDG  103 (153)
T ss_dssp             HTTC--------CS---SSEEEEEE-TTEEEEEEES
T ss_pred             HcCC--------CC---CCEEEEEE-CCEEEEEEeC
Confidence            7887        22   34677888 9988654444

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.57  E-value=1.2e-07  Score=76.29  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++ .+.++.|+.|.                            ..++++
T Consensus        34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~   83 (130)
T 2dml_A           34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNADK----------------------------HQSLGG   83 (130)
T ss_dssp             CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCC----------------------------CHHHHH
Confidence            3689999999 99999999999999999998864 37777776542                            235777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                      .|++        ++   .|++++++++|.+.
T Consensus        84 ~~~v--------~~---~Pt~~~~~~~~~~~  103 (130)
T 2dml_A           84 QYGV--------QG---FPTIKIFGANKNKP  103 (130)
T ss_dssp             HHTC--------CS---SSEEEEESSCTTSC
T ss_pred             HcCC--------Cc---cCEEEEEeCCCCeE
Confidence            7887        22   34677888888743

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.57  E-value=4.7e-08  Score=77.94  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=39.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +||+++|.|| ++|||+|+...|.+.++.+++++.++.++.|+.|.
T Consensus        32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~   76 (121)
T 2j23_A           32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE   76 (121)
T ss_dssp             SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC
Confidence            5789999999 99999999999999999988876678888887653

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.56  E-value=7.9e-08  Score=75.85  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +||+++|.|| ++|||+|+...|.|.++.+++.+  +.++.|+.|
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~   70 (114)
T 2oe3_A           29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVD   70 (114)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECC
Confidence            5789999999 99999999999999999988753  888888765

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.56  E-value=4.1e-08  Score=76.04  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=36.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|+++|+|| ++||++|+...|.+.++.+++.  ++.++.|+.|
T Consensus        17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~   58 (105)
T 4euy_A           17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQ   58 (105)
T ss_dssp             CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEEC
T ss_pred             cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECC
Confidence            5789999999 9999999999999999998873  6778777765

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.56  E-value=2.4e-08  Score=78.78  Aligned_cols=70  Identities=13%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC--CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +||+++|.|| ++||+.|....|.++++.+++++.  ++.++.|..+.                            +..+
T Consensus        23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~   73 (120)
T 1mek_A           23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE----------------------------ESDL   73 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT----------------------------CCSS
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC----------------------------CHHH
Confidence            5899999999 999999999999999999988754  35555555431                            1256


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                      .++|++      ..+|+++++ ++|+++
T Consensus        74 ~~~~~v------~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           74 AQQYGV------RGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             HHHHTC------CSSSEEEEE-ESSCSS
T ss_pred             HHHCCC------CcccEEEEE-eCCCcC
Confidence            788998      688999998 588765

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.56  E-value=4.1e-08  Score=79.24  Aligned_cols=75  Identities=15%  Similarity=0.285  Sum_probs=56.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|..                            .++++
T Consensus        39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~----------------------------~~l~~   88 (128)
T 2o8v_B           39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   88 (128)
T ss_dssp             CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC----------------------------CTTSG
T ss_pred             cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHH
Confidence            5789999999 99999999999999999998864 488888876631                            13556


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .|++        .+   .|+++++ ++|++.....|.
T Consensus        89 ~~~v--------~~---~Pt~~~~-~~G~~~~~~~G~  113 (128)
T 2o8v_B           89 KYGI--------RG---IPTLLLF-KNGEVAATKVGA  113 (128)
T ss_dssp             GGTC--------CS---SSEEEEE-ETTEEEEEEESC
T ss_pred             HcCC--------Cc---cCEEEEE-eCCEEEEEEcCC
Confidence            6777        22   3455666 899887555554

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.55  E-value=5.8e-08  Score=75.99  Aligned_cols=75  Identities=8%  Similarity=0.090  Sum_probs=54.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|.|| ++|||+|+...|.+.++.+++.  ++.++.|+.+.                            ..++++
T Consensus        18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~~   66 (110)
T 2l6c_A           18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA----------------------------RPELMK   66 (110)
T ss_dssp             TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG----------------------------CHHHHH
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC----------------------------CHHHHH
Confidence            4689999999 9999999999999998877653  56666665432                            344777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .||+        ++   .|+++++ ++|++.....|..
T Consensus        67 ~~~v--------~~---~Pt~~~~-~~G~~v~~~~G~~   92 (110)
T 2l6c_A           67 ELGF--------ER---VPTLVFI-RDGKVAKVFSGIM   92 (110)
T ss_dssp             HTTC--------CS---SCEEEEE-ESSSEEEEEESCC
T ss_pred             HcCC--------cc---cCEEEEE-ECCEEEEEEcCCC
Confidence            7887        22   3455666 8998876666654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.55  E-value=5.6e-08  Score=82.65  Aligned_cols=88  Identities=3%  Similarity=-0.109  Sum_probs=60.2

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHH---HHHHHHHHHhCCcEEEEEeCCCHHhH-HHHhcCccccCCCCCcc
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILA---FNDRLEEFHQINTEVVAASVDSHFTH-LAWVNTPRKEGGLGKLK  335 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~---l~~l~~~~~~~~v~vv~Is~d~~~~~-~~~~~~~~~~~~~~~~~  335 (384)
                      .+.+..+...||+|+|+|| ++||++|+...+.   ..++.+.+++ ++.++.|..|...++ +.|.+            
T Consensus        29 ~ea~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~------------   94 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMT------------   94 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHH------------
T ss_pred             HHHHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHH------------
Confidence            4456666778999999999 9999999997773   2345555543 467777776632222 22221            


Q ss_pred             eeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        336 IPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       336 ~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                               .+...+|+      ...|+++++|++|++++.
T Consensus        95 ---------~~q~~~gv------~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           95 ---------VCQIILGR------GGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             ---------HHHHHHSC------CCSSEEEEECTTSCEEEE
T ss_pred             ---------HHHHHcCC------CCCcceeeECCCCCceee
Confidence                     11223577      689999999999999985

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.55  E-value=5.7e-08  Score=77.14  Aligned_cols=53  Identities=11%  Similarity=0.049  Sum_probs=42.3

Q ss_pred             ccceEEcc-cc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         69 QLKEIKLS-DY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        69 ~g~~~~l~-~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +|...++. .+  .||+++|.|| ++|||+|+...|.|.++.+++  .++.++.|+.|.
T Consensus         9 ~g~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~   64 (118)
T 2f51_A            9 NGTHEALLNRIKEAPGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK   64 (118)
T ss_dssp             CSCHHHHHHHHHHCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT
T ss_pred             cCCHHHHHHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC
Confidence            44444444 23  4789999999 999999999999999999888  578888887754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.55  E-value=7.6e-08  Score=73.94  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ++..||+++|.|| ++|||+|+...|.+.++.+++.  ++.++.|+.|
T Consensus        15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~   59 (104)
T 2vim_A           15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVD   59 (104)
T ss_dssp             HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT
T ss_pred             HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEecc
Confidence            3446899999999 9999999999999999998874  7888888775

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.54  E-value=8.6e-08  Score=74.24  Aligned_cols=76  Identities=14%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .||+++|.|| ++|||+|....|.+.++.+++++ .+.++.|+.|.                            ..++++
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   69 (109)
T 3tco_A           20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDE----------------------------NQKIAD   69 (109)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEcccc----------------------------CHHHHH
Confidence            5899999999 99999999999999999998864 47777776642                            234666


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .|++        .+   .|+++++ ++|++.....|..
T Consensus        70 ~~~i--------~~---~Pt~~~~-~~g~~~~~~~g~~   95 (109)
T 3tco_A           70 KYSV--------LN---IPTTLIF-VNGQLVDSLVGAV   95 (109)
T ss_dssp             HTTC--------CS---SSEEEEE-ETTEEEEEEESCC
T ss_pred             hcCc--------cc---CCEEEEE-cCCcEEEeeeccC
Confidence            7777        22   2345566 8888776555543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.54  E-value=7.5e-08  Score=74.72  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=37.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++|+++|.|| ++||++|+...|.+.++.+++  .++.++.|+.|.
T Consensus        20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~--~~~~~~~vd~~~   62 (107)
T 1gh2_A           20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKY--PQAVFLEVDVHQ   62 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT
T ss_pred             CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHC--CCcEEEEEECcc
Confidence            5789999999 999999999999999999888  368888887653

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.54  E-value=3e-08  Score=80.78  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=58.5

Q ss_pred             eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhc
Q psy17178         82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG  161 (384)
Q Consensus        82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~yg  161 (384)
                      +++|+|| ++|||+|+..+|.+.++.++++   +.++.|+.++.....                   ..|...++++.||
T Consensus        33 ~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~-------------------~~d~~~~l~~~~~   89 (135)
T 3emx_A           33 DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGER-------------------ELSAARLEMNKAG   89 (135)
T ss_dssp             SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHH-------------------HHHHHHHHHHHHT
T ss_pred             cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhh-------------------hhhhhHHHHHHcC
Confidence            8999999 9999999999999999988764   888889886532211                   1123366788999


Q ss_pred             CcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        162 VYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       162 v~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |        .+++    ++++.++|++.....|..
T Consensus        90 v--------~~~P----t~~~~~~G~~v~~~~G~~  112 (135)
T 3emx_A           90 V--------EGTP----TLVFYKEGRIVDKLVGAT  112 (135)
T ss_dssp             C--------CSSS----EEEEEETTEEEEEEESCC
T ss_pred             C--------ceeC----eEEEEcCCEEEEEEeCCC
Confidence            8        3333    345555999887766654

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.54  E-value=7.3e-08  Score=74.25  Aligned_cols=46  Identities=22%  Similarity=0.210  Sum_probs=39.0

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++.+||+++|.|| ++|||+|+...|.+.++.++++  ++.++.|+.|
T Consensus        15 l~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~   60 (105)
T 3m9j_A           15 LDAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD   60 (105)
T ss_dssp             HHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETT
T ss_pred             HHhcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhh
Confidence            34446899999999 9999999999999999998884  4888888765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.53  E-value=1.3e-07  Score=74.09  Aligned_cols=43  Identities=9%  Similarity=0.257  Sum_probs=37.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +||+++|.|| +.||++|+...|.+.++.++++  ++.++.|+.|.
T Consensus        25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~   67 (112)
T 1syr_A           25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE   67 (112)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC
Confidence            6789999999 9999999999999999998874  58888887653

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.53  E-value=8e-08  Score=73.56  Aligned_cols=74  Identities=16%  Similarity=0.203  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      ++|+++|.|| ++|||+|+...|.+.++.+++++  +.++.|+.|.                            ..++++
T Consensus        15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~----------------------------~~~~~~   63 (104)
T 2e0q_A           15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE----------------------------NPDIAA   63 (104)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999988754  8888887653                            134677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .|++        .+   .|+++++ ++|++.....|.
T Consensus        64 ~~~v--------~~---~Pt~~~~-~~g~~~~~~~g~   88 (104)
T 2e0q_A           64 RYGV--------MS---LPTVIFF-KDGEPVDEIIGA   88 (104)
T ss_dssp             HTTC--------CS---SCEEEEE-ETTEEEEEEESC
T ss_pred             hCCc--------cc---cCEEEEE-ECCeEhhhccCC
Confidence            7887        22   2445566 889876544443

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.53  E-value=1.4e-07  Score=94.16  Aligned_cols=77  Identities=1%  Similarity=-0.057  Sum_probs=63.8

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      .||+++|+|| ++||++|+.+.|.++++++++++  .++.++.|+.|.                          |....+
T Consensus        29 ~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------d~~~~l   81 (519)
T 3t58_A           29 SSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------ETNSAV   81 (519)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------GGGHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------cccHHH
Confidence            3689999999 99999999999999999999976  368888888763                          223577


Q ss_pred             HHHhCceecCCCceeeEEEEEeC---CceEEEEEe
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECY---KMVIVYWFE  378 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~---~G~i~~~~~  378 (384)
                      .++|||      ..+|+++++++   +|+++..+.
T Consensus        82 ~~~~~V------~~~PTl~~f~~g~~~G~~~~~~~  110 (519)
T 3t58_A           82 CREFNI------AGFPTVRFFQAFTKNGSGATLPG  110 (519)
T ss_dssp             HHHTTC------CSBSEEEEECTTCCSCCCEEECC
T ss_pred             HHHcCC------cccCEEEEEcCcccCCCceeEec
Confidence            889999      78999999997   777666444

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.2e-07  Score=76.33  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh---CCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcch
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  155 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  155 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++   .++.++.|+.+.                            ..+
T Consensus        24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~   74 (133)
T 1x5d_A           24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV----------------------------NQV   74 (133)
T ss_dssp             SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT----------------------------CCH
T ss_pred             CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC----------------------------CHH
Confidence            4689999999 99999999999999999999873   457777776542                            246


Q ss_pred             hHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        156 ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       156 ~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      +++.|++        ++   .|+++++++ |++..
T Consensus        75 l~~~~~v--------~~---~Pt~~~~~~-g~~~~   97 (133)
T 1x5d_A           75 LASRYGI--------RG---FPTIKIFQK-GESPV   97 (133)
T ss_dssp             HHHHHTC--------CS---SSEEEEEET-TEEEE
T ss_pred             HHHhCCC--------Ce---eCeEEEEeC-CCceE
Confidence            7888888        22   346678887 76543

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=9.7e-08  Score=76.46  Aligned_cols=43  Identities=12%  Similarity=0.140  Sum_probs=37.4

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+.++|.|| ++||++|+...|.+.++.+++++.++.++.|+.|
T Consensus        22 ~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~   64 (126)
T 1x5e_A           22 EGDWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT   64 (126)
T ss_dssp             SSEEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETT
T ss_pred             CCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECc
Confidence            345899999 9999999999999999999987767888888765

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.52  E-value=3.1e-07  Score=71.70  Aligned_cols=77  Identities=14%  Similarity=0.068  Sum_probs=60.0

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +++++|+|+ ++||++|....|.++++.++   .++.++-|.+|....+                        ...++..
T Consensus        24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~~------------------------Sn~IA~~   75 (112)
T 3iv4_A           24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERDL------------------------SDYIAKK   75 (112)
T ss_dssp             CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHHH------------------------HHHHHHH
T ss_pred             CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCchh------------------------hHHHHHH
Confidence            789999998 99999999999999999873   4577888877632211                        2457888


Q ss_pred             hCceecCCCce-eeEEEEEeCCceEEEEEecCC
Q psy17178        350 YGVYLSDQGHT-LDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       350 ~gv~~~~~~~~-~p~~~lId~~G~i~~~~~~~~  381 (384)
                      |||      .+ .|+.+++ ++|++++....++
T Consensus        76 ~~V------~h~sPq~il~-k~G~~v~~~SH~~  101 (112)
T 3iv4_A           76 TNV------KHESPQAFYF-VNGEMVWNRDHGD  101 (112)
T ss_dssp             HTC------CCCSSEEEEE-ETTEEEEEEEGGG
T ss_pred             hCC------ccCCCeEEEE-ECCEEEEEeeccc
Confidence            999      65 7888888 6999999766554

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.52  E-value=8.5e-08  Score=78.16  Aligned_cols=70  Identities=19%  Similarity=0.099  Sum_probs=55.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +||++||+|| ++||++|....|.|+++.+++  .++.++.|+.|..                 .              +
T Consensus        29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~~~~-----------------~--------------~   74 (135)
T 2dbc_A           29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKF--PETKFVKAIVNSC-----------------I--------------E   74 (135)
T ss_dssp             SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHC--SSEEEEEECCSSS-----------------C--------------S
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEEhhcC-----------------c--------------c
Confidence            4589999999 999999999999999999887  3578888876631                 0              2


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|++++++ +|+++..+..
T Consensus        75 ~~~i------~~~Pt~~~~~-~G~~v~~~~G   98 (135)
T 2dbc_A           75 HYHD------NCLPTIFVYK-NGQIEGKFIG   98 (135)
T ss_dssp             SCCS------SCCSEEEEES-SSSCSEEEES
T ss_pred             cCCC------CCCCEEEEEE-CCEEEEEEEe
Confidence            5777      6788887775 9998886653

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.90  E-value=1.3e-08  Score=78.44  Aligned_cols=73  Identities=16%  Similarity=0.238  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|.|| ++|||.|....|.++++.+++++ ++.++.|+.|..                            ..+.+
T Consensus        18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~----------------------------~~~~~   67 (106)
T 2yj7_A           18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDEN----------------------------PNTAA   67 (106)
Confidence            5789999999 99999999999999999988864 467776665421                            23456


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .||+      ...|+++++ ++|+++..+.
T Consensus        68 ~~~v------~~~Pt~~~~-~~g~~~~~~~   90 (106)
T 2yj7_A           68 QYGI------RSIPTLLLF-KNGQVVDRLV   90 (106)
Confidence            6777      567888888 7888877554

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.51  E-value=1.9e-07  Score=68.97  Aligned_cols=41  Identities=20%  Similarity=0.157  Sum_probs=36.0

Q ss_pred             CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        271 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       271 k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .++++.|| ++|||.|....|.++++.++++ .++.++.|+.|
T Consensus         3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~   43 (85)
T 1fo5_A            3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVM   43 (85)
T ss_dssp             CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESS
T ss_pred             ceEEEEEe-CCCCCchHHHHHHHHHHHHHcC-CceEEEEEECC
Confidence            46789999 9999999999999999998875 46889888886

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.50  E-value=1.1e-07  Score=75.19  Aligned_cols=79  Identities=9%  Similarity=0.057  Sum_probs=54.2

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .|++++|+|| ++|||+|+...|.+.++.++++   ..+..++.+.....                      |...++++
T Consensus        28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~----------------------~~~~~~~~   81 (118)
T 1zma_A           28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL----------------------NDLQAFRS   81 (118)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH----------------------HHHHHHHH
T ss_pred             CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH----------------------HHHHHHHH
Confidence            4789999999 9999999999999999988764   44566766642211                      11235677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .||+        +++   |+++++ ++|++.....|.
T Consensus        82 ~~~i--------~~~---Pt~~~~-~~G~~~~~~~G~  106 (118)
T 1zma_A           82 RYGI--------PTV---PGFVHI-TDGQINVRCDSS  106 (118)
T ss_dssp             HHTC--------CSS---CEEEEE-ETTEEEEECCTT
T ss_pred             HcCC--------CCC---CeEEEE-ECCEEEEEecCC
Confidence            8888        333   345555 588876555543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.50  E-value=1.2e-07  Score=74.69  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .||+++|.|| ++|||+|+...|.+.++.++++  ++.++.|+.|
T Consensus        27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~   68 (118)
T 2vm1_A           27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD   68 (118)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT
T ss_pred             CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcc
Confidence            4899999999 9999999999999999998875  6888888765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.49  E-value=1.3e-07  Score=76.04  Aligned_cols=73  Identities=18%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      ++|+++|.|| ++||++|+...|.|.++.+++  .++.++.|+.|.                            ..++++
T Consensus        36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~d~----------------------------~~~l~~   84 (125)
T 1r26_A           36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEF--PTVKFAKVDADN----------------------------NSEIVS   84 (125)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHC--TTSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHC--CCCEEEEEECCC----------------------------CHHHHH
Confidence            6789999999 999999999999999999888  368888887753                            134677


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      .|++        .+++   + +++.++|++.....|
T Consensus        85 ~~~v--------~~~P---t-~~i~~~G~~~~~~~G  108 (125)
T 1r26_A           85 KCRV--------LQLP---T-FIIARSGKMLGHVIG  108 (125)
T ss_dssp             HTTC--------CSSS---E-EEEEETTEEEEEEES
T ss_pred             HcCC--------Cccc---E-EEEEeCCeEEEEEeC
Confidence            7887        3333   3 445589988655555

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.49  E-value=1.9e-08  Score=83.70  Aligned_cols=82  Identities=9%  Similarity=-0.034  Sum_probs=54.6

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      +..+...||+++|+|| |+||++|+...|.+.+..+-.+..+..++.|.+|..        ..       .         
T Consensus        37 l~~A~~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e--------~~-------~---------   91 (151)
T 3ph9_A           37 LFYAQKSKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE--------TT-------D---------   91 (151)
T ss_dssp             HHHHHHHTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC--------CS-------C---------
T ss_pred             HHHHHHcCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC--------ch-------h---------
Confidence            4444457999999999 999999999999888752211111124566666621        00       1         


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                         ....|++      ..+|+++++|++|+++....
T Consensus        92 ---~~~~~~v------~~~PT~~f~~~~G~~v~~~~  118 (151)
T 3ph9_A           92 ---KNLSPDG------QYVPRIMFVDPSLTVRADIA  118 (151)
T ss_dssp             ---GGGCTTC------CCSSEEEEECTTSCBCTTCC
T ss_pred             ---hHhhcCC------CCCCEEEEECCCCCEEEEEe
Confidence               1224555      57899999999999987544

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.48  E-value=3.4e-07  Score=73.85  Aligned_cols=54  Identities=9%  Similarity=0.046  Sum_probs=41.0

Q ss_pred             ccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-CcEEEEEeCC
Q psy17178         69 QLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVD  123 (384)
Q Consensus        69 ~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~v~vi~Vs~d  123 (384)
                      +++.+...-. .+|+++|.|| ++||++|+...|.|.++.++++.. ++.++.|..+
T Consensus        13 ~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~   68 (133)
T 2dj3_A           13 VGKTFDAIVMDPKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT   68 (133)
T ss_dssp             CTTTCCCCCTCTTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTT
T ss_pred             cCCCHHHHhccCCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence            4444443322 4889999999 999999999999999999999753 5666666554

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.48  E-value=2.7e-07  Score=82.99  Aligned_cols=68  Identities=7%  Similarity=0.057  Sum_probs=56.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      .+|+++|+|| ++||++|+...|.++++++++++  .++.++.|+.+.                          |.+..+
T Consensus        29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~--------------------------~~~~~l   81 (244)
T 3q6o_A           29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE--------------------------ETNSAV   81 (244)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS--------------------------TTTHHH
T ss_pred             CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc--------------------------hhhHHH
Confidence            4589999999 99999999999999999999976  468888888653                          123567


Q ss_pred             HHHhCceecCCCceeeEEEEEeC
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECY  369 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~  369 (384)
                      .+.|++      ..+|+++++++
T Consensus        82 ~~~~~v------~~~Pt~~~~~~   98 (244)
T 3q6o_A           82 CRDFNI------PGFPTVRFFXA   98 (244)
T ss_dssp             HHHTTC------CSSSEEEEECT
T ss_pred             HHHcCC------CccCEEEEEeC
Confidence            788888      68899999986

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.48  E-value=5.7e-08  Score=85.42  Aligned_cols=92  Identities=12%  Similarity=0.099  Sum_probs=64.1

Q ss_pred             CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccc
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRK  137 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~  137 (384)
                      ++..+.++   +++.+......|++++|.|| ++||++|+...|.+.++.+++++ .+.++.|+.|..            
T Consensus        95 ~~~~v~~l---~~~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~------------  157 (210)
T 3apq_A           95 DDPEIITL---ERREFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDD------------  157 (210)
T ss_dssp             TCTTSEEC---CHHHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTC------------
T ss_pred             CCCceEEe---cHHHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCcc------------
Confidence            34444444   45544444457899999999 99999999999999999998854 478888775431            


Q ss_pred             cCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        138 EGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       138 ~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                                      .++++.|||        .++   |+++++ ++|++.....|
T Consensus       158 ----------------~~l~~~~~v--------~~~---Pt~~~~-~~G~~~~~~~G  186 (210)
T 3apq_A          158 ----------------RMLCRMKGV--------NSY---PSLFIF-RSGMAAVKYNG  186 (210)
T ss_dssp             ----------------HHHHHHTTC--------CSS---SEEEEE-CTTSCCEECCS
T ss_pred             ----------------HHHHHHcCC--------CcC---CeEEEE-ECCCceeEecC
Confidence                            246677887        333   345555 99988655555

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.47  E-value=9.9e-08  Score=74.54  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=37.3

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ..||+++|.|| ++|||+|....|.++++.+++.  ++.++.|+.|
T Consensus        24 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~   66 (113)
T 1ti3_A           24 GSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD   66 (113)
T ss_dssp             TSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred             hcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEcc
Confidence            35899999999 9999999999999999988874  6888888765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.47  E-value=1.8e-07  Score=69.04  Aligned_cols=63  Identities=16%  Similarity=0.295  Sum_probs=49.8

Q ss_pred             eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhC
Q psy17178        272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG  351 (384)
Q Consensus       272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g  351 (384)
                      ++++.|| ++|||+|....|.++++.+++++ ++.++.|+.|..                            ..+.+.||
T Consensus         3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~~~~   52 (85)
T 1nho_A            3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVD----------------------------REKAIEYG   52 (85)
T ss_dssp             CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTC----------------------------GGGGGGTC
T ss_pred             EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHHhCC
Confidence            4578899 99999999999999999998863 588888887621                            23456788


Q ss_pred             ceecCCCceeeEEEEEeCCceE
Q psy17178        352 VYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       352 v~~~~~~~~~p~~~lId~~G~i  373 (384)
                      +      ..+|++++   +|++
T Consensus        53 v------~~~Pt~~~---~G~~   65 (85)
T 1nho_A           53 L------MAVPAIAI---NGVV   65 (85)
T ss_dssp             S------SCSSEEEE---TTTE
T ss_pred             c------eeeCEEEE---CCEE
Confidence            8      67888777   7887

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.47  E-value=1.6e-08  Score=81.41  Aligned_cols=77  Identities=13%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             eccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178        264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  343 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~  343 (384)
                      ..+...||+++|+|| ++||+.|....|.++++.++++  ++.++.|+.|.                            .
T Consensus        30 ~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~   78 (130)
T 1wmj_A           30 TKAKEAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE----------------------------L   78 (130)
T ss_dssp             HHHHTTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT----------------------------S
T ss_pred             HHHhhcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc----------------------------h
Confidence            333346899999999 9999999999999999998875  67777777652                            1


Q ss_pred             hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ..+.+.|++      ..+|+++++ ++|+++..+.
T Consensus        79 ~~~~~~~~v------~~~Pt~~~~-~~g~~~~~~~  106 (130)
T 1wmj_A           79 KEVAEKYNV------EAMPTFLFI-KDGAEADKVV  106 (130)
T ss_dssp             GGGHHHHTC------CSSCCCCBC-TTTTCCBCCC
T ss_pred             HHHHHHcCC------CccceEEEE-eCCeEEEEEe
Confidence            345677887      567765444 7888776444

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.46  E-value=2e-07  Score=72.08  Aligned_cols=44  Identities=14%  Similarity=0.223  Sum_probs=37.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|+++|.|| ++|||+|+...|.+.++.+++.+ ++.++.|+.|.
T Consensus        17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~   60 (109)
T 2yzu_A           17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE   60 (109)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT
T ss_pred             CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC
Confidence            4789999999 99999999999999999998864 58888887653

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.46  E-value=8.3e-09  Score=80.63  Aligned_cols=75  Identities=8%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEE
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLL  339 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (384)
                      ++.+++++..||++||+|| ++||++|+...|.++++.++++     .+-+..|..                        
T Consensus         2 ~~~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~------------------------   51 (106)
T 3kp8_A            2 PLAVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-----YVECSPNGP------------------------   51 (106)
T ss_dssp             HHHHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCT------------------------
T ss_pred             hHhhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-----EEEEecccc------------------------
Confidence            3457788888999999999 9999999999999999886552     222221110                        


Q ss_pred             ecCchHHHHHhCceecCCCceeeEEEEEeCCceE
Q psy17178        340 SDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       340 ~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .+....+.++||+      ..+|++++   +|+.
T Consensus        52 ~~~~~~l~~~~~V------~~~PT~~i---~G~~   76 (106)
T 3kp8_A           52 GTPQAQECTEAGI------TSYPTWII---NGRT   76 (106)
T ss_dssp             TSCCCHHHHHTTC------CSSSEEEE---TTEE
T ss_pred             cchhHHHHHHcCC------eEeCEEEE---CCEE
Confidence            0234678899999      68888555   7874

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.45  E-value=2.2e-07  Score=72.24  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=37.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+++++|.|| +.||++|+...|.+.++.+++.+ ++.++.|+.|
T Consensus        21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~   63 (111)
T 3gnj_A           21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVE   63 (111)
T ss_dssp             SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT
T ss_pred             cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECC
Confidence            4689999999 99999999999999999998864 5888888765

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.45  E-value=3.4e-07  Score=75.76  Aligned_cols=70  Identities=7%  Similarity=0.029  Sum_probs=53.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+|||.|| |+||++|+...|.|.++.+++.+ .+.|+-|++|..                            .+++.
T Consensus        40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe~----------------------------~e~a~   89 (160)
T 2av4_A           40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITEV----------------------------PDFNT   89 (160)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC----------------------------CTTTT
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCCC----------------------------HHHHH
Confidence            4589999999 99999999999999999999854 377888888732                            12355


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .|++      ...|+.++. ++|+.+.
T Consensus        90 ~y~V------~siPT~~fF-k~G~~v~  109 (160)
T 2av4_A           90 MYEL------YDPVSVMFF-YRNKHMM  109 (160)
T ss_dssp             TTTC------CSSEEEEEE-ETTEEEE
T ss_pred             HcCC------CCCCEEEEE-ECCEEEE
Confidence            6887      567776656 4677663

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.44  E-value=1.2e-07  Score=75.83  Aligned_cols=81  Identities=12%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             ccccCCCeEEEEEeeCC-------CCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcccee
Q psy17178         75 LSDYYGKYLVFFFYPLD-------FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  147 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~-------~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  147 (384)
                      +.+.+||+++|.|| ++       |||+|+...|.+.++.+++.+ ++.++.|+.+...   .|.               
T Consensus        19 ~~~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~~---------------   78 (123)
T 1wou_A           19 VEQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YWK---------------   78 (123)
T ss_dssp             HHTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HHH---------------
T ss_pred             HHHhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hhh---------------
Confidence            33445899999999 99       999999999999999887754 6889999887532   121               


Q ss_pred             EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        148 LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       148 ~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                         |...++++.|++        +++   |++++++..+++.
T Consensus        79 ---d~~~~~~~~~~i--------~~~---Pt~~~~~~~~~~~  106 (123)
T 1wou_A           79 ---DPNNDFRKNLKV--------TAV---PTLLKYGTPQKLV  106 (123)
T ss_dssp             ---CTTCHHHHHHCC--------CSS---SEEEETTSSCEEE
T ss_pred             ---chhHHHHHHCCC--------Cee---CEEEEEcCCceEe
Confidence               345568888888        333   3556777644443

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.44  E-value=2e-07  Score=76.24  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.|
T Consensus        23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~   65 (140)
T 3hz4_A           23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIA   65 (140)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETT
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC
Confidence            3789999999 99999999999999999999865 4888888754

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.43  E-value=1.6e-07  Score=84.47  Aligned_cols=71  Identities=10%  Similarity=-0.019  Sum_probs=56.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +|++|||+|| ++||++|....|.|.+++++|.  ++.|+.|+.+.        .         .            +.+
T Consensus       132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~--------~---------~------------l~~  179 (245)
T 1a0r_P          132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN--------T---------G------------AGD  179 (245)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH--------H---------C------------CTT
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc--------H---------H------------HHH
Confidence            4889999999 9999999999999999999885  58888887642        1         1            123


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .|++      ..+|+++++. +|+++..+.
T Consensus       180 ~~~I------~~~PTll~~~-~G~~v~~~v  202 (245)
T 1a0r_P          180 RFSS------DVLPTLLVYK-GGELLSNFI  202 (245)
T ss_dssp             SSCT------TTCSEEEEEE-TTEEEEEET
T ss_pred             HCCC------CCCCEEEEEE-CCEEEEEEe
Confidence            5677      6788877765 999988665

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.43  E-value=7.5e-08  Score=78.52  Aligned_cols=43  Identities=9%  Similarity=0.136  Sum_probs=36.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC--cEEEEEeC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASV  122 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--v~vi~Vs~  122 (384)
                      .+|+++|.|| ++||++|+...|.|.++.+++++.+  +.++.|..
T Consensus        33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~   77 (140)
T 2dj1_A           33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA   77 (140)
T ss_dssp             TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECT
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeC
Confidence            4789999999 9999999999999999999998764  56655543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.43  E-value=2.8e-07  Score=70.82  Aligned_cols=76  Identities=13%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|.|| ++|||+|+...|.+.++.+++++ ++.++.|+.|.                            ..++++
T Consensus        17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   66 (105)
T 1fb6_A           17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------APGIAT   66 (105)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------hHHHHH
Confidence            4689999999 99999999999999999988864 47777777653                            135667


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .||+        .+++   + +++.++|++.....|..
T Consensus        67 ~~~v--------~~~P---t-~~~~~~g~~~~~~~G~~   92 (105)
T 1fb6_A           67 QYNI--------RSIP---T-VLFFKNGERKESIIGAV   92 (105)
T ss_dssp             HTTC--------CSSS---E-EEEEETTEEEEEEEECC
T ss_pred             hCCC--------Cccc---E-EEEEeCCeEEEEEecCC
Confidence            7777        2333   3 34447898876555544

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.41  E-value=7.2e-07  Score=72.41  Aligned_cols=71  Identities=11%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             CeEEEEEEeCCCC--cCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        271 KYLVFFFYPLDFT--FVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       271 k~vvl~F~~a~~c--~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +++||.|| ++||  ++|+...|.|.++.++|.+ .++++-|++|.                            +..++.
T Consensus        34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe----------------------------~~~la~   83 (137)
T 2qsi_A           34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEA----------------------------ERGLMA   83 (137)
T ss_dssp             SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGG----------------------------HHHHHH
T ss_pred             CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence            49999999 9999  9999999999999998853 47777776663                            245678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +|||      ...|+.++. +||+++....
T Consensus        84 ~ygV------~siPTlilF-kdG~~v~~~v  106 (137)
T 2qsi_A           84 RFGV------AVCPSLAVV-QPERTLGVIA  106 (137)
T ss_dssp             HHTC------CSSSEEEEE-ECCEEEEEEE
T ss_pred             HcCC------ccCCEEEEE-ECCEEEEEEe
Confidence            8999      788988877 6999998765

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.39  E-value=3.3e-07  Score=74.69  Aligned_cols=74  Identities=14%  Similarity=0.049  Sum_probs=58.4

Q ss_pred             CCCeEEEEEEeCCC--CcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~--c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      .++++||+|| +.|  |++|+...|.|.++.++|.++.+.|+-|++|.                            +..+
T Consensus        33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe----------------------------~~~l   83 (140)
T 2qgv_A           33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ----------------------------SEAI   83 (140)
T ss_dssp             TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH----------------------------HHHH
T ss_pred             CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC----------------------------CHHH
Confidence            4567888888 887  99999999999999998864437776666552                            2456


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +.+|||      ..+|+.++. ++|+++....
T Consensus        84 A~~ygV------~sIPTlilF-k~G~~v~~~~  108 (140)
T 2qgv_A           84 GDRFGA------FRFPATLVF-TGGNYRGVLN  108 (140)
T ss_dssp             HHHHTC------CSSSEEEEE-ETTEEEEEEE
T ss_pred             HHHcCC------ccCCEEEEE-ECCEEEEEEe
Confidence            788999      788987777 6999998665

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.38  E-value=1e-06  Score=63.75  Aligned_cols=62  Identities=11%  Similarity=0.072  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCc
Q psy17178        273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV  352 (384)
Q Consensus       273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  352 (384)
                      +.|+|| ++||++|+...|.++++.++++. ++.++.|+                               +..+.++||+
T Consensus         2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~-------------------------------~~~~~~~~~v   48 (77)
T 1ilo_A            2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK-------------------------------EMDQILEAGL   48 (77)
T ss_dssp             EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC-------------------------------SHHHHHHHTC
T ss_pred             cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec-------------------------------CHHHHHHCCC
Confidence            358899 88999999999999999887752 45555543                               2356778998


Q ss_pred             eecCCCceeeEEEEEeCCceEEEE
Q psy17178        353 YLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       353 ~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                            ..+|++++   +|+++..
T Consensus        49 ------~~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           49 ------TALPGLAV---DGELKIM   63 (77)
T ss_dssp             ------SSSSCEEE---TTEEEEC
T ss_pred             ------CcCCEEEE---CCEEEEc
Confidence                  67888777   8998763

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.37  E-value=8.8e-07  Score=82.23  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|+|| ++||++|+...|.++++.+++++. +.++.|+.|..                          .+..+.+
T Consensus        34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~--------------------------~~~~l~~   85 (298)
T 3ed3_A           34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLN--------------------------KNKALCA   85 (298)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTST--------------------------TTHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCc--------------------------cCHHHHH
Confidence            4789999999 999999999999999999998654 88999988732                          1356778


Q ss_pred             HhCceecCCCceeeEEEEEeCCce
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMV  372 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~  372 (384)
                      .||+      ..+|+++++++ |+
T Consensus        86 ~~~I------~~~Pt~~~~~~-g~  102 (298)
T 3ed3_A           86 KYDV------NGFPTLMVFRP-PK  102 (298)
T ss_dssp             HTTC------CBSSEEEEEEC-CC
T ss_pred             hCCC------CccceEEEEEC-Cc
Confidence            8998      68899888875 44

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.37  E-value=3.3e-07  Score=81.22  Aligned_cols=44  Identities=11%  Similarity=0.246  Sum_probs=38.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|+++|+|| ++||++|+...|.+.++.+++++ .+.++.|+.|.
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~   72 (222)
T 3dxb_A           29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ   72 (222)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT
T ss_pred             cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCC
Confidence            4789999999 99999999999999999999875 38888887753

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.36  E-value=5.1e-07  Score=71.36  Aligned_cols=44  Identities=16%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|+++|.|| ++|||+|+...|.+.++.++++. ++.++.|+.|.
T Consensus        29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~   72 (121)
T 2i1u_A           29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT   72 (121)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC
Confidence            4789999999 99999999999999999988864 58888887653

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.70  E-value=5.3e-08  Score=74.88  Aligned_cols=43  Identities=19%  Similarity=0.267  Sum_probs=35.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|+++|.|| ++|||.|....|.+.++.+++++ ++.++.|+.|
T Consensus        18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~   60 (106)
T 2yj7_A           18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVD   60 (106)
Confidence            4689999999 99999999999999999888764 4666666554

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.33  E-value=6e-07  Score=71.01  Aligned_cols=54  Identities=9%  Similarity=0.030  Sum_probs=42.2

Q ss_pred             ccceEEcc-ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh----CCcEEEEEeCC
Q psy17178         69 QLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVD  123 (384)
Q Consensus        69 ~g~~~~l~-~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~----~~v~vi~Vs~d  123 (384)
                      +++.+... .-++|+++|.|| ++||++|+...|.+.++.+++++    .++.++.|..+
T Consensus        13 ~~~~f~~~v~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~   71 (121)
T 2djj_A           13 VAKNYNEIVLDDTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT   71 (121)
T ss_dssp             CTTTTTTSSSCTTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT
T ss_pred             cccCHHHHhhcCCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECc
Confidence            44444433 236789999999 99999999999999999999975    26777777665

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.33  E-value=2.4e-07  Score=72.86  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=34.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASV  122 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~  122 (384)
                      ++|+++|.|| ++|||+|+...|.+.++.+++++.  ++.++.|..
T Consensus        23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~   67 (120)
T 1mek_A           23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA   67 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcC
Confidence            5789999999 999999999999999999888754  344444443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.32  E-value=5.5e-07  Score=72.00  Aligned_cols=76  Identities=17%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             CCCeEEEEEeeCCCCC--------------CchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCcc
Q psy17178         79 YGKYLVFFFYPLDFTF--------------VCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKL  144 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp--------------~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~  144 (384)
                      .||+++|.|| ++||+              +|+...|.+.++.+++++ ++.++.|+.|.                    
T Consensus        20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~--------------------   77 (123)
T 1oaz_A           20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ--------------------   77 (123)
T ss_dssp             CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS--------------------
T ss_pred             CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCC--------------------
Confidence            5789999999 99999              999999999999988864 47888887653                    


Q ss_pred             ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        145 KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       145 ~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                              ..++++.||+        ++   .|+++++ ++|++.....|..
T Consensus        78 --------~~~l~~~~~v--------~~---~Pt~~~~-~~G~~~~~~~G~~  109 (123)
T 1oaz_A           78 --------NPGTAPKYGI--------RG---IPTLLLF-KNGEVAATKVGAL  109 (123)
T ss_dssp             --------CTTTGGGGTC--------CB---SSEEEEE-ESSSEEEEEESCC
T ss_pred             --------CHHHHHHcCC--------Cc---cCEEEEE-ECCEEEEEEeCCC
Confidence                    1246677887        33   2455667 8999876555543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.32  E-value=3e-07  Score=75.71  Aligned_cols=71  Identities=14%  Similarity=0.067  Sum_probs=48.3

Q ss_pred             CeEEEEEEeCCC--CcCchHhHHHHHHHHHHHHhCCcE--EEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        271 KYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTE--VVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       271 k~vvl~F~~a~~--c~~C~~~~~~l~~l~~~~~~~~v~--vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      +.+||+|| ++|  |++|+...|.|+++.++|  .++.  ++.|+.|.                            ...+
T Consensus        35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~--~~v~~~~~~Vd~d~----------------------------~~~l   83 (142)
T 2es7_A           35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF--PQFDWQVAVADLEQ----------------------------SEAI   83 (142)
T ss_dssp             CSEEEEEC-CCSCC----CCHHHHHHHHHHTC--TTSCCEEEEECHHH----------------------------HHHH
T ss_pred             CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh--cccceeEEEEECCC----------------------------CHHH
Confidence            44677787 666  999999999999999988  3577  77777652                            1346


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++||+      ..+|+++++ ++|+++..+.+
T Consensus        84 a~~~~V------~~iPT~~~f-k~G~~v~~~~G  109 (142)
T 2es7_A           84 GDRFNV------RRFPATLVF-TDGKLRGALSG  109 (142)
T ss_dssp             HHTTTC------CSSSEEEEE-SCC----CEES
T ss_pred             HHhcCC------CcCCeEEEE-eCCEEEEEEeC
Confidence            778999      789999999 89999886653

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.30  E-value=7.4e-07  Score=73.23  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=38.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .||+++|+|| ++||++|+...|.|.++.+++++ ++.++.|+.|.
T Consensus        22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~   65 (142)
T 1qgv_A           22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE   65 (142)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEcccc
Confidence            4789999999 99999999999999999999854 58888888763

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.30  E-value=3.9e-07  Score=70.74  Aligned_cols=43  Identities=9%  Similarity=0.101  Sum_probs=35.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d  123 (384)
                      +++++|.|| ++||++|+...|.+.++.+++.+.  ++.++.|+.|
T Consensus        21 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~   65 (111)
T 3uvt_A           21 EGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT   65 (111)
T ss_dssp             SSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT
T ss_pred             CCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc
Confidence            789999999 999999999999999998876533  5666666654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.29  E-value=2.5e-07  Score=76.88  Aligned_cols=83  Identities=11%  Similarity=0.010  Sum_probs=52.4

Q ss_pred             EccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCc
Q psy17178         74 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  153 (384)
Q Consensus        74 ~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  153 (384)
                      ..+...||+|+|+|| ++||++|+...|.+.+..+-.+..+..++.|.+|..      ..         .          
T Consensus        38 ~~A~~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e------~~---------~----------   91 (151)
T 3ph9_A           38 FYAQKSKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE------TT---------D----------   91 (151)
T ss_dssp             HHHHHHTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC------CS---------C----------
T ss_pred             HHHHHcCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC------ch---------h----------
Confidence            334446899999999 999999999999887652211111123455555520      00         1          


Q ss_pred             chhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        154 HKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       154 ~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                        .+..|++        .   ..|+++++|++|++.....|.
T Consensus        92 --~~~~~~v--------~---~~PT~~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A           92 --KNLSPDG--------Q---YVPRIMFVDPSLTVRADIAGR  120 (151)
T ss_dssp             --GGGCTTC--------C---CSSEEEEECTTSCBCTTCCCS
T ss_pred             --hHhhcCC--------C---CCCEEEEECCCCCEEEEEeCC
Confidence              1223444        2   235678999999998877775

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.29  E-value=1.3e-06  Score=69.86  Aligned_cols=44  Identities=9%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh----CCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~----~~v~vi~Vs~d  123 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++..    .++.++.|..|
T Consensus        32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~   79 (127)
T 3h79_A           32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE   79 (127)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT
T ss_pred             CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc
Confidence            3789999999 99999999999999999988863    23556556544

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.25  E-value=1.4e-07  Score=75.68  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             cCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         78 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        78 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ..||+++|.|| ++|||+|+...|.|.++.+++.  ++.++.|+.|
T Consensus        34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~   76 (130)
T 1wmj_A           34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVD   76 (130)
T ss_dssp             TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTT
T ss_pred             hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEecc
Confidence            46899999999 9999999999999999998875  5777776654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.24  E-value=1.2e-06  Score=71.44  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=36.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .++.++|.|| ++|||+|....|.+.++.+++.+ ++.++.|+.|.
T Consensus        49 ~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~   92 (140)
T 1v98_A           49 GAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE   92 (140)
T ss_dssp             CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT
T ss_pred             cCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC
Confidence            3434889999 99999999999999999998864 58888887653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.22  E-value=4.2e-06  Score=79.31  Aligned_cols=72  Identities=7%  Similarity=0.025  Sum_probs=55.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHH-------HHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILA-------FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  341 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~-------l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D  341 (384)
                      ++++++|+|| |+||+ |+..+|.       ++++.+++++.++.++.|+.|.                           
T Consensus        27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~---------------------------   77 (350)
T 1sji_A           27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK---------------------------   77 (350)
T ss_dssp             TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---------------------------
T ss_pred             hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---------------------------
Confidence            4789999999 99999 9888898       7777777766678888777653                           


Q ss_pred             CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                       +..+.++||+      ..+|+++++ ++|++. .|.
T Consensus        78 -~~~l~~~~~v------~~~Pt~~~~-~~g~~~-~~~  105 (350)
T 1sji_A           78 -EAKLAKKLGF------DEEGSLYVL-KGDRTI-EFD  105 (350)
T ss_dssp             -THHHHHHHTC------CSTTEEEEE-ETTEEE-EEC
T ss_pred             -CHHHHHhcCC------CccceEEEE-ECCcEE-Eec
Confidence             2356788998      678998888 578843 344

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.21  E-value=2e-06  Score=68.09  Aligned_cols=44  Identities=11%  Similarity=0.037  Sum_probs=38.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++ ++.++.|+.+.
T Consensus        20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~   63 (122)
T 3aps_A           20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA   63 (122)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC
Confidence            4689999999 99999999999999999998865 68888887764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.21  E-value=2.5e-06  Score=67.75  Aligned_cols=69  Identities=17%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      ++++||+|| ++||++|+...|.|+++.+++.  ++.++-|++|..                               +++
T Consensus        23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~-------------------------------~~~   68 (118)
T 3evi_A           23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC-------------------------------IQH   68 (118)
T ss_dssp             TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT-------------------------------STT
T ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh-------------------------------HHH
Confidence            459999999 9999999999999999999884  588888887631                               134


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |++      ...|+.++. ++|+.+..+..
T Consensus        69 ~~v------~~~PT~~~f-k~G~~v~~~~G   91 (118)
T 3evi_A           69 YHD------NCLPTIFVY-KNGQIEAKFIG   91 (118)
T ss_dssp             CCG------GGCSEEEEE-ETTEEEEEEES
T ss_pred             CCC------CCCCEEEEE-ECCEEEEEEeC
Confidence            677      678876666 58999887663

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.21  E-value=1.2e-06  Score=71.26  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=36.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      +||++||+|| ++||++|+...|.|.++.+++.  ++.++.|+.+.
T Consensus        29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~   71 (135)
T 2dbc_A           29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNS   71 (135)
T ss_dssp             SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSS
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhc
Confidence            4689999999 9999999999999999998873  57777776553

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.21  E-value=7.9e-07  Score=88.02  Aligned_cols=69  Identities=12%  Similarity=0.157  Sum_probs=54.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      .||+++|+|| ++||++|+.+.|.++++.+++++. ++.++.|..+..                             .+.
T Consensus       369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-----------------------------~~~  418 (481)
T 3f8u_A          369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-----------------------------DVP  418 (481)
T ss_dssp             TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-----------------------------CCC
T ss_pred             CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-----------------------------hhH
Confidence            4899999999 999999999999999999999764 677777766531                             112


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceE
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      +.|++      ..+|++++++++|++
T Consensus       419 ~~~~v------~~~Pt~~~~~~~~~~  438 (481)
T 3f8u_A          419 SPYEV------RGFPTIYFSPANKKL  438 (481)
T ss_dssp             TTCCC------CSSSEEEEECTTCTT
T ss_pred             hhCCC------cccCEEEEEeCCCeE
Confidence            45677      578888888877764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.20  E-value=6e-06  Score=79.27  Aligned_cols=72  Identities=11%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-----CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-----INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  343 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-----~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~  343 (384)
                      .+++++|.|| ++||++|....|.++++.+++++     .++.++.|+.+                            .+
T Consensus        21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~----------------------------~~   71 (382)
T 2r2j_A           21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD----------------------------QH   71 (382)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT----------------------------TC
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC----------------------------cc
Confidence            5789999999 99999999999999999999853     23677777644                            23


Q ss_pred             hHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      ..+.+.||+      ..+|+++++ ++|+++.+
T Consensus        72 ~~l~~~~~v------~~~Pt~~~f-~~G~~~~~   97 (382)
T 2r2j_A           72 SDIAQRYRI------SKYPTLKLF-RNGMMMKR   97 (382)
T ss_dssp             HHHHHHTTC------CEESEEEEE-ETTEEEEE
T ss_pred             HHHHHhcCC------CcCCEEEEE-eCCcEeee
Confidence            567788998      688987766 58888764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.19  E-value=7.8e-07  Score=86.96  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=54.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC-------CcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  341 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~-------~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D  341 (384)
                      .+|++||+|| ++||++|+.+.|.++++++++++.       .+.++.|+.|.                           
T Consensus        41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~---------------------------   92 (470)
T 3qcp_A           41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS---------------------------   92 (470)
T ss_dssp             GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---------------------------
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---------------------------
Confidence            4589999999 999999999999999999988643       27788887653                           


Q ss_pred             CchHHHHHhCceecCCCceeeEEEEEeCCce
Q psy17178        342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMV  372 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~  372 (384)
                       ...+.++|+|      ..+|+++++++.|.
T Consensus        93 -~~~la~~y~V------~~~PTlilf~~gg~  116 (470)
T 3qcp_A           93 -EVDLCRKYDI------NFVPRLFFFYPRDS  116 (470)
T ss_dssp             -CHHHHHHTTC------CSSCEEEEEEESSC
T ss_pred             -CHHHHHHcCC------CccCeEEEEECCCc
Confidence             1356677887      67888888866553

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.17  E-value=1.7e-06  Score=63.70  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=34.1

Q ss_pred             eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+++.|| ++|||+|+...|.+.++.+++.+ ++.++.|+.|
T Consensus         3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~   42 (85)
T 1nho_A            3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIM   42 (85)
T ss_dssp             CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTT
T ss_pred             EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECC
Confidence            3578899 99999999999999999988863 6888888775

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.17  E-value=1.7e-06  Score=63.61  Aligned_cols=42  Identities=19%  Similarity=0.155  Sum_probs=35.8

Q ss_pred             CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .++++.|| ++|||+|+...|.+.++.+++. .++.++.|+.|.
T Consensus         3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~   44 (85)
T 1fo5_A            3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVME   44 (85)
T ss_dssp             CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSS
T ss_pred             ceEEEEEe-CCCCCchHHHHHHHHHHHHHcC-CceEEEEEECCC
Confidence            46788999 9999999999999999988875 368888888763

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.16  E-value=2e-06  Score=75.90  Aligned_cols=71  Identities=10%  Similarity=-0.001  Sum_probs=56.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      +|+++||+|| ++||++|....|.+.++.++|.  ++.++.|+.+ .       ..                     +.+
T Consensus       119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~-------~~---------------------l~~  166 (217)
T 2trc_P          119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-N-------TG---------------------AGD  166 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-H-------HT---------------------CST
T ss_pred             CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-c-------HH---------------------HHH
Confidence            4689999999 9999999999999999998883  6888888765 1       11                     123


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      .|++      ..+|+++++. +|+++..+.
T Consensus       167 ~~~i------~~~PTl~~~~-~G~~v~~~~  189 (217)
T 2trc_P          167 RFSS------DVLPTLLVYK-GGELISNFI  189 (217)
T ss_dssp             TSCG------GGCSEEEEEE-TTEEEEEET
T ss_pred             HCCC------CCCCEEEEEE-CCEEEEEEe
Confidence            5677      6789888885 999987665

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.13  E-value=1.5e-06  Score=73.81  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=38.8

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEe
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  311 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is  311 (384)
                      +....+.+..+|++|+.|| ..|||.|....|.|.++.+++++  +.++.+.
T Consensus        12 ~~~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~   60 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYRE   60 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred             CCCCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEe
Confidence            4445666778999999999 99999999999999999987653  5555443

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.13  E-value=9.7e-08  Score=74.48  Aligned_cols=39  Identities=8%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHH
Q psy17178         71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF  110 (384)
Q Consensus        71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~  110 (384)
                      +.++|++++||++||.|| ++|||+|+...|.|.++.+++
T Consensus         3 ~~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~   41 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQV   41 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGS
T ss_pred             HhhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhC
Confidence            456788888999999999 999999999999999887655

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.10  E-value=3.4e-06  Score=78.22  Aligned_cols=43  Identities=16%  Similarity=0.189  Sum_probs=38.2

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+++++|+|| ++||++|+..+|.+.++.+++++ .+.++.|+.|
T Consensus        34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d   76 (298)
T 3ed3_A           34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCD   76 (298)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEcc
Confidence            4689999999 99999999999999999999865 3888888887

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.08  E-value=7.9e-06  Score=72.09  Aligned_cols=42  Identities=10%  Similarity=-0.051  Sum_probs=34.4

Q ss_pred             CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh---CCcEEEEEeCC
Q psy17178         81 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVD  123 (384)
Q Consensus        81 k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~v~vi~Vs~d  123 (384)
                      +.++|.|| ++|||+|+...|.+.++.+++.+   .++.++.|+.|
T Consensus       135 ~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~  179 (226)
T 1a8l_A          135 DVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI  179 (226)
T ss_dssp             CEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG
T ss_pred             CcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc
Confidence            34499999 99999999999999999999874   36777766544

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.02  E-value=8e-06  Score=81.30  Aligned_cols=74  Identities=7%  Similarity=0.102  Sum_probs=59.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.+.                            +..+.+
T Consensus        30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~----------------------------~~~l~~   80 (504)
T 2b5e_A           30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLCM   80 (504)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999999977678888887552                            135677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceE--EEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVI--VYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i--~~~~~  378 (384)
                      +||+      ..+|+++++. +|+.  ...|.
T Consensus        81 ~~~v------~~~Pt~~~~~-~g~~~~~~~~~  105 (504)
T 2b5e_A           81 EHNI------PGFPSLKIFK-NSDVNNSIDYE  105 (504)
T ss_dssp             HTTC------CSSSEEEEEE-TTCTTCEEECC
T ss_pred             hcCC------CcCCEEEEEe-CCccccceeec
Confidence            8888      6788888886 5664  44444

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.01  E-value=6.2e-06  Score=68.22  Aligned_cols=44  Identities=7%  Similarity=0.056  Sum_probs=37.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++|||.|| ++||++|+...|.|.++.+++.+ .+.++-|.+|.
T Consensus        40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe   83 (160)
T 2av4_A           40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE   83 (160)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC
Confidence            3579999999 99999999999999999999853 36777777764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.99  E-value=1.3e-05  Score=79.30  Aligned_cols=73  Identities=7%  Similarity=0.055  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .|++++|+|| ++||++|+...|.+.++.+++++. +.++.|+.+.                            +..+.+
T Consensus        20 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~----------------------------~~~l~~   69 (481)
T 3f8u_A           20 SAGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA----------------------------NTNTCN   69 (481)
T ss_dssp             SSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC----------------------------CHHHHH
Confidence            3489999999 999999999999999999998755 7777777653                            245678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +||+      ..+|+.+++ ++|+++..|.
T Consensus        70 ~~~v------~~~Ptl~~~-~~g~~~~~~~   92 (481)
T 3f8u_A           70 KYGV------SGYPTLKIF-RDGEEAGAYD   92 (481)
T ss_dssp             HTTC------CEESEEEEE-ETTEEEEECC
T ss_pred             hcCC------CCCCEEEEE-eCCceeeeec
Confidence            8998      688977666 6887776555

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.95  E-value=3.1e-06  Score=69.49  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             CeEEEEEeeCCC--CCCchHHHHHHHHhHHHHHhCCcE--EEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchh
Q psy17178         81 KYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTE--VVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  156 (384)
Q Consensus        81 k~vvl~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~v~--vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  156 (384)
                      +.+||+|| ++|  |++|+...|.|.++.+++  .++.  ++.|+.|.                            ..++
T Consensus        35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~--~~v~~~~~~Vd~d~----------------------------~~~l   83 (142)
T 2es7_A           35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF--PQFDWQVAVADLEQ----------------------------SEAI   83 (142)
T ss_dssp             CSEEEEEC-CCSCC----CCHHHHHHHHHHTC--TTSCCEEEEECHHH----------------------------HHHH
T ss_pred             CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh--cccceeEEEEECCC----------------------------CHHH
Confidence            34677777 655  999999999999999988  3566  77776542                            2347


Q ss_pred             HHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        157 SLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       157 ~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      +++|||        +++   |+++++ ++|++.....|.
T Consensus        84 a~~~~V--------~~i---PT~~~f-k~G~~v~~~~G~  110 (142)
T 2es7_A           84 GDRFNV--------RRF---PATLVF-TDGKLRGALSGI  110 (142)
T ss_dssp             HHTTTC--------CSS---SEEEEE-SCC----CEESC
T ss_pred             HHhcCC--------CcC---CeEEEE-eCCEEEEEEeCC
Confidence            778888        333   355677 899987665554

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.94  E-value=5e-06  Score=67.72  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeeCCC--CCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchh
Q psy17178         79 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  156 (384)
Q Consensus        79 ~gk~vvl~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  156 (384)
                      .+++|||+|| +.|  |++|+...|.|.++.++|.++.+.++-|++|.                            ..++
T Consensus        33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe----------------------------~~~l   83 (140)
T 2qgv_A           33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ----------------------------SEAI   83 (140)
T ss_dssp             TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH----------------------------HHHH
T ss_pred             CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC----------------------------CHHH
Confidence            4568889888 877  99999999999999998864336665554442                            3457


Q ss_pred             HHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        157 SLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       157 ~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +.+|||        ++++    ++++=++|++.+...|..
T Consensus        84 A~~ygV--------~sIP----TlilFk~G~~v~~~~G~~  111 (140)
T 2qgv_A           84 GDRFGA--------FRFP----ATLVFTGGNYRGVLNGIH  111 (140)
T ss_dssp             HHHHTC--------CSSS----EEEEEETTEEEEEEESCC
T ss_pred             HHHcCC--------ccCC----EEEEEECCEEEEEEecCC
Confidence            778888        3434    345558998877666654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.94  E-value=5.6e-06  Score=73.00  Aligned_cols=45  Identities=13%  Similarity=-0.042  Sum_probs=35.9

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      +.+.+..||++|+.|| +.|||+|+...+.|+++.+    .+++++.+..
T Consensus        79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~  123 (216)
T 1eej_A           79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAF  123 (216)
T ss_dssp             EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEEC
Confidence            4444567899999999 9999999999999988764    3688776653

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=97.94  E-value=4.1e-06  Score=71.07  Aligned_cols=53  Identities=4%  Similarity=-0.067  Sum_probs=37.2

Q ss_pred             cceEEccccCCCeEEEEEeeCCCCCCchHHHHH---HHHhHHHHHhCCcEEEEEeCCC
Q psy17178         70 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILA---FNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        70 g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~---l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+.+.....+||+|+|+|| ++||++|+...++   ..++.+.+++ ++.++-|..|.
T Consensus        29 ~ea~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de   84 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREE   84 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTT
T ss_pred             HHHHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcc
Confidence            3446666668999999999 9999999986662   2344444443 57777776664

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.92  E-value=8.8e-06  Score=63.42  Aligned_cols=40  Identities=18%  Similarity=0.108  Sum_probs=33.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +++++|+|+ ++|||+|+.-.|.|.++.++   .++.++-|.+|
T Consensus        24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVd   63 (112)
T 3iv4_A           24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQ   63 (112)
T ss_dssp             CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGG
T ss_pred             CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEee
Confidence            689999999 99999999999999998873   35667766555

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.91  E-value=1.3e-05  Score=57.62  Aligned_cols=36  Identities=11%  Similarity=0.051  Sum_probs=28.3

Q ss_pred             EEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEE
Q psy17178         83 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  120 (384)
Q Consensus        83 vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~V  120 (384)
                      ..|.|| ++|||+|+...|.+.++.++++. ++.++.|
T Consensus         2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v   37 (77)
T 1ilo_A            2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKI   37 (77)
T ss_dssp             EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEe
Confidence            358899 88999999999999999887742 4555544

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.89  E-value=1.6e-05  Score=64.43  Aligned_cols=74  Identities=12%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CeEEEEEeeCCCC--CCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         81 KYLVFFFYPLDFT--FVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        81 k~vvl~f~~~~~c--p~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      +++||.|| ++||  ++|+...|-|.++.++|.+ .+.++-|++|.                            +.+++.
T Consensus        34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe----------------------------~~~la~   83 (137)
T 2qsi_A           34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEA----------------------------ERGLMA   83 (137)
T ss_dssp             SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGG----------------------------HHHHHH
T ss_pred             CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence            49999999 8899  9999999999999998853 46665555443                            345777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|||        ++++    ++++=++|++.+...|..
T Consensus        84 ~ygV--------~siP----TlilFkdG~~v~~~vG~~  109 (137)
T 2qsi_A           84 RFGV--------AVCP----SLAVVQPERTLGVIAKIQ  109 (137)
T ss_dssp             HHTC--------CSSS----EEEEEECCEEEEEEESCC
T ss_pred             HcCC--------ccCC----EEEEEECCEEEEEEeCCC
Confidence            7888        3333    234448998887666655

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=97.84  E-value=6.1e-05  Score=62.47  Aligned_cols=76  Identities=9%  Similarity=-0.060  Sum_probs=50.9

Q ss_pred             cCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCch
Q psy17178        268 YYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  344 (384)
Q Consensus       268 ~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  344 (384)
                      -.||+++|+|+ +.||..|...-...   .++.+.++ +++.++-+.+|+++.                          .
T Consensus        40 ~~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~~~~--------------------------~   91 (153)
T 2dlx_A           40 MQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEEG--------------------------Q   91 (153)
T ss_dssp             HHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHHH--------------------------H
T ss_pred             HcCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCCHhH--------------------------H
Confidence            35899999999 99999998764333   23333332 256666666654321                          2


Q ss_pred             HHHHHhCceecCCCceeeEEEEEeCC-ceEEEEE
Q psy17178        345 KISLDYGVYLSDQGHTLDKYCLECYK-MVIVYWF  377 (384)
Q Consensus       345 ~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~~~  377 (384)
                      .+.+.|++      ...|+++++|++ |+.+..+
T Consensus        92 ~l~~~y~v------~~~P~~~fld~~~G~~l~~~  119 (153)
T 2dlx_A           92 RYIQFYKL------GDFPYVSILDPRTGQKLVEW  119 (153)
T ss_dssp             HHHHHHTC------CSSSEEEEECTTTCCCCEEE
T ss_pred             HHHHHcCC------CCCCEEEEEeCCCCcEeeec
Confidence            34567888      578899999998 8665544

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.84  E-value=5.1e-06  Score=65.49  Aligned_cols=76  Identities=11%  Similarity=0.009  Sum_probs=49.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  347 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  347 (384)
                      +.+.+||+|| +.||+.|+...+.+...++... ...+.++-|.+|...                          ...++
T Consensus        17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~--------------------------~~~la   69 (116)
T 3dml_A           17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPL--------------------------PPGLE   69 (116)
T ss_dssp             --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCC--------------------------CTTCB
T ss_pred             cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCC--------------------------chhHH
Confidence            4567899999 9999999987766554443211 123566666666321                          01223


Q ss_pred             HHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        348 LDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       348 ~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ..|++      ..+|+.++++ +|+.+.+..
T Consensus        70 ~~~~V------~g~PT~i~f~-~G~ev~Ri~   93 (116)
T 3dml_A           70 LARPV------TFTPTFVLMA-GDVESGRLE   93 (116)
T ss_dssp             CSSCC------CSSSEEEEEE-TTEEEEEEE
T ss_pred             HHCCC------CCCCEEEEEE-CCEEEeeec
Confidence            45677      6789999999 999998665

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.83  E-value=2.3e-05  Score=74.21  Aligned_cols=44  Identities=5%  Similarity=-0.015  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHH-------HHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILA-------FNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~-------l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| ++||+ |+..+|.       +.++.+++++.++.+..|+.+.
T Consensus        27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~   77 (350)
T 1sji_A           27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK   77 (350)
T ss_dssp             TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT
T ss_pred             hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC
Confidence            4689999999 99999 9888898       7888888877678888888765

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=97.81  E-value=9.4e-06  Score=72.86  Aligned_cols=42  Identities=12%  Similarity=0.000  Sum_probs=36.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +|++|||+|| ++||++|+...|.|.++.++|.  ++.++.|..+
T Consensus       132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d  173 (245)
T 1a0r_P          132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKAS  173 (245)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHH
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence            4789999999 9999999999999999999885  4888877654

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.78  E-value=8.1e-05  Score=63.20  Aligned_cols=44  Identities=7%  Similarity=0.149  Sum_probs=35.6

Q ss_pred             CCeEEEEEEeC-------CCCcCchHhHHHHHHHHHHHHh----CCcEEEEEeCCC
Q psy17178        270 GKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVDS  314 (384)
Q Consensus       270 Gk~vvl~F~~a-------~~c~~C~~~~~~l~~l~~~~~~----~~v~vv~Is~d~  314 (384)
                      +.++||.|| |       .||++|+...|.++++.+++..    ..+.+.-|.+|.
T Consensus        37 ~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~   91 (178)
T 3ga4_A           37 GYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE   91 (178)
T ss_dssp             TCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT
T ss_pred             CCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc
Confidence            458999999 6       5999999999999999999962    346666666664

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.73  E-value=2e-05  Score=68.00  Aligned_cols=43  Identities=16%  Similarity=0.119  Sum_probs=37.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .||++|+.|| ..|||.|....|.+.++.+++.+ ++.+.-+.++
T Consensus        24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            5899999999 99999999999999999988865 5788777765

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.63  E-value=8e-05  Score=71.34  Aligned_cols=45  Identities=11%  Similarity=0.141  Sum_probs=38.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-----CCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-----INTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-----~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| +.||++|+...|.+.++.+++++     .++.++.|+.+.
T Consensus        21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~   70 (382)
T 2r2j_A           21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ   70 (382)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc
Confidence            4789999999 99999999999999999999863     347777777664

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.61  E-value=1.4e-05  Score=70.45  Aligned_cols=46  Identities=13%  Similarity=-0.055  Sum_probs=36.5

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      .+.+.+..||++|+.|| ..|||+|+...+.|.++.+    .++.++.+..
T Consensus        78 ~~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~  123 (216)
T 1eej_A           78 MIVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAF  123 (216)
T ss_dssp             SEEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             CeeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEEC
Confidence            35555667899999999 9999999999999888654    3788776654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.60  E-value=4.9e-05  Score=65.31  Aligned_cols=42  Identities=14%  Similarity=0.005  Sum_probs=35.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      .|+++|+.|| ..|||.|....|.|.++.+++.+ ++.+.-+.+
T Consensus        24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            6899999999 99999999999999999888765 576665554

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.59  E-value=0.00013  Score=65.28  Aligned_cols=46  Identities=13%  Similarity=-0.037  Sum_probs=37.2

Q ss_pred             ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh---CCcEEEEEeCC
Q psy17178         77 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVD  123 (384)
Q Consensus        77 ~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~v~vi~Vs~d  123 (384)
                      +++|+++++.|| ++|||+|+...|.++++.++++.   .++.+..|..+
T Consensus       135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~  183 (243)
T 2hls_A          135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAY  183 (243)
T ss_dssp             HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETT
T ss_pred             HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECc
Confidence            456888899999 99999999999999999998852   45666666543

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.54  E-value=2.5e-05  Score=66.01  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=38.7

Q ss_pred             cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178         70 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  121 (384)
Q Consensus        70 g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs  121 (384)
                      +..+.+.+..+|++|+.|| ..|||+|....|.+.++.+++.+  +.++.+.
T Consensus        12 ~~~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~   60 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYRE   60 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred             CCCCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEe
Confidence            4456667778899999999 99999999999999999887643  4544443

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.53  E-value=6.2e-05  Score=59.55  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=36.4

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++++||.|| ++||++|+...|.|.++.+++.  ++.++-|+.|.
T Consensus        23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~   64 (118)
T 3evi_A           23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS   64 (118)
T ss_dssp             TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGG
T ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHH
Confidence            459999999 9999999999999999999884  58888887764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=97.52  E-value=5.9e-05  Score=66.44  Aligned_cols=42  Identities=12%  Similarity=0.018  Sum_probs=36.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +|++|||.|| ++||++|+...|.|.++.++|.  ++.++.|..+
T Consensus       119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~  160 (217)
T 2trc_P          119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS  160 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH
T ss_pred             CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC
Confidence            4689999999 9999999999999999998873  6788877654

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=97.51  E-value=0.0001  Score=72.01  Aligned_cols=45  Identities=16%  Similarity=0.048  Sum_probs=39.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-------CcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-------~v~vi~Vs~d~  124 (384)
                      .+|++||+|| ++||++|+...|.+.++.+++++.       .+.++.|+.|.
T Consensus        41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~   92 (470)
T 3qcp_A           41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS   92 (470)
T ss_dssp             GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC
Confidence            4589999999 999999999999999999998643       38888888875

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.51  E-value=0.00011  Score=57.39  Aligned_cols=27  Identities=11%  Similarity=0.029  Sum_probs=22.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRL  297 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~  297 (384)
                      +++++++ || ++|||+|....+.|+++.
T Consensus        18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~   44 (116)
T 2e7p_A           18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVG   44 (116)
T ss_dssp             TSSSEEE-EE-CTTCHHHHHHHHHHHHHT
T ss_pred             cCCCEEE-EE-CCCChhHHHHHHHHHHcC
Confidence            4566665 88 999999999999888774

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.49  E-value=0.00019  Score=64.25  Aligned_cols=102  Identities=13%  Similarity=0.018  Sum_probs=59.7

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC---CC--HHhH---------HHHhcCccc
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DS--HFTH---------LAWVNTPRK  327 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~---d~--~~~~---------~~~~~~~~~  327 (384)
                      .+.+.+-.+|++|+.|| ..|||.|....+.+.++.++   .++.|+-+..   ++  ....         .++.+.+..
T Consensus        89 ~i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~  164 (241)
T 1v58_A           89 WLLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA  164 (241)
T ss_dssp             CEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred             CceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence            34444556888999999 99999999999999887653   3576665543   11  1111         111111110


Q ss_pred             cCCCCCcc--------eeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceE
Q psy17178        328 EGGLGKLK--------IPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVI  373 (384)
Q Consensus       328 ~~~~~~~~--------~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i  373 (384)
                      .....++.        .....+.+..+++++|+      ..+|++++.|.+|++
T Consensus       165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv------~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGA------NVTPAIYYMSKENTL  212 (241)
T ss_dssp             TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTC------CSSCEEEEEETTTEE
T ss_pred             HhccCCCCccccCCHHHHHHHHHHHHHHHHcCC------CCCCEEEEECCCCCE
Confidence            00000111        00012233567788998      789999998888976

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.47  E-value=0.00046  Score=65.67  Aligned_cols=70  Identities=6%  Similarity=-0.018  Sum_probs=51.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhH------HHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEI------LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~------~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      .+++++|.|| |.||++|...-      |.++++.+.+++.++.+..|..+..                           
T Consensus        29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~---------------------------   80 (367)
T 3us3_A           29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD---------------------------   80 (367)
T ss_dssp             HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTT---------------------------
T ss_pred             hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCccc---------------------------
Confidence            4689999999 99999874332      5778888877666677777776531                           


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                       ..++++|||      ..+|+.+++. +|+.+
T Consensus        81 -~~l~~~~~V------~~~PTl~~f~-~G~~~  104 (367)
T 3us3_A           81 -AAVAKKLGL------TEEDSIYVFK-EDEVI  104 (367)
T ss_dssp             -HHHHHHHTC------CSTTEEEEEE-TTEEE
T ss_pred             -HHHHHHcCC------CcCceEEEEE-CCcEE
Confidence             356778888      6788888876 67764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.47  E-value=0.00012  Score=63.00  Aligned_cols=42  Identities=17%  Similarity=0.107  Sum_probs=35.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      .|+++|+.|| ..|||.|....+.|.++.++++. ++.+..+.+
T Consensus        21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            5788999998 99999999999999999988754 577776665

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.41  E-value=0.00031  Score=51.00  Aligned_cols=64  Identities=13%  Similarity=0.086  Sum_probs=43.5

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCce
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY  353 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~  353 (384)
                      ++.|| ++|||.|....+.++++.+++   ++.+..+.+|...                         .+..+.+.||+ 
T Consensus         4 ~~~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~~-------------------------~~~~~~~~~gv-   53 (80)
T 2k8s_A            4 KAIFY-HAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTDK-------------------------ARIAEAEKAGV-   53 (80)
T ss_dssp             EEEEE-ECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTCS-------------------------STHHHHHHHTC-
T ss_pred             eEEEe-CCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCCh-------------------------hhHHHHHHcCC-
Confidence            45677 999999999999988876443   4555555555210                         12345677888 


Q ss_pred             ecCCCceeeEEEEEeCCceEEE
Q psy17178        354 LSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       354 ~~~~~~~~p~~~lId~~G~i~~  375 (384)
                           ..+|++++   +|+++.
T Consensus        54 -----~~vPt~~i---~g~~~~   67 (80)
T 2k8s_A           54 -----KSVPALVI---DGAAFH   67 (80)
T ss_dssp             -----CEEEEEEE---TTEEEE
T ss_pred             -----CcCCEEEE---CCEEEE
Confidence                 68887665   788654

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.35  E-value=2.8e-05  Score=61.17  Aligned_cols=79  Identities=11%  Similarity=0.062  Sum_probs=45.4

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  157 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  157 (384)
                      +.+.+||.|| +.||++|+.--+.+...++... ...+.++-|.++..                          ....++
T Consensus        17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~--------------------------~~~~la   69 (116)
T 3dml_A           17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP--------------------------LPPGLE   69 (116)
T ss_dssp             --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC--------------------------CCTTCB
T ss_pred             cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC--------------------------CchhHH
Confidence            4468999999 9999999987665443332211 11244444444431                          012234


Q ss_pred             HhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        158 LDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       158 ~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..|+|           ..+|++++++ +|+......|..
T Consensus        70 ~~~~V-----------~g~PT~i~f~-~G~ev~Ri~G~~   96 (116)
T 3dml_A           70 LARPV-----------TFTPTFVLMA-GDVESGRLEGYP   96 (116)
T ss_dssp             CSSCC-----------CSSSEEEEEE-TTEEEEEEECCC
T ss_pred             HHCCC-----------CCCCEEEEEE-CCEEEeeecCCC
Confidence            44555           2345677788 998877666665

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.34  E-value=0.00072  Score=56.89  Aligned_cols=50  Identities=8%  Similarity=-0.025  Sum_probs=39.8

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeC
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASV  312 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~  312 (384)
                      .+.+.+..++++|+.|+ ..+||.|....+.+.++.++|.+ .+++++....
T Consensus        19 ~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            45566667898888888 99999999999999999988844 3477776654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.26  E-value=0.00026  Score=60.62  Aligned_cols=42  Identities=10%  Similarity=-0.058  Sum_probs=34.4

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      .++++|+.|| ..+||.|....+.+.++.+++.+ ++.+..+..
T Consensus        24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            5788888888 99999999999999999887753 577765554

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.12  E-value=0.00038  Score=60.85  Aligned_cols=38  Identities=13%  Similarity=0.040  Sum_probs=30.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEe
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  311 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is  311 (384)
                      .+|++|+.|| ..|||+|+...+.|.++.+    .++.+..+.
T Consensus        85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~  122 (211)
T 1t3b_A           85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLA  122 (211)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEE
Confidence            5789999999 9999999999999888543    367776543

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.11  E-value=0.00038  Score=65.85  Aligned_cols=44  Identities=14%  Similarity=0.150  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC-CcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~v~vi~Vs~d  123 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++. ++.++.|..+
T Consensus       266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~  310 (361)
T 3uem_A          266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST  310 (361)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETT
T ss_pred             CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence            4789999999 999999999999999999999764 4555555443

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.02  E-value=0.0013  Score=55.74  Aligned_cols=32  Identities=6%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             CCCeEEEEEeeC-------CCCCCchHHHHHHHHhHHHHH
Q psy17178         79 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFH  111 (384)
Q Consensus        79 ~gk~vvl~f~~~-------~~cp~C~~~~~~l~~~~~~~~  111 (384)
                      ++.+|||.|| +       .||++|+.-.|.+.++.+++.
T Consensus        36 ~~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~   74 (178)
T 3ga4_A           36 PGYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIR   74 (178)
T ss_dssp             TTCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhh
Confidence            4568999999 5       599999999999999999996

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.01  E-value=0.0011  Score=58.26  Aligned_cols=41  Identities=10%  Similarity=-0.043  Sum_probs=32.9

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      ++.+++.|| ++||++|+...|.+.++.+++  .++.++.|+.+
T Consensus       136 ~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~--~~v~~~~vd~~  176 (229)
T 2ywm_A          136 IPIEIWVFV-TTSCGYCPSAAVMAWDFALAN--DYITSKVIDAS  176 (229)
T ss_dssp             SCEEEEEEE-CTTCTTHHHHHHHHHHHHHHC--TTEEEEEEEGG
T ss_pred             CCeEEEEEE-CCCCcchHHHHHHHHHHHHHC--CCeEEEEEECC
Confidence            345578899 999999999999999998887  36777776543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=97.00  E-value=0.0016  Score=47.42  Aligned_cols=37  Identities=8%  Similarity=-0.118  Sum_probs=30.6

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      |+.|+ ++|||.|....+.|+++.+++  .++.+.-|+++
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~vdi~   39 (85)
T 1ego_A            3 TVIFG-RSGCPYCVRAKDLAEKLSNER--DDFQYQYVDIR   39 (85)
T ss_dssp             EEEEC-CTTSTHHHHHHHHHHHHHHHH--SSCEEEEECHH
T ss_pred             EEEEe-CCCCCCHHHHHHHHHHHHhcC--CCceEEEEecc
Confidence            56677 999999999999999988765  46888877765

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.98  E-value=0.00041  Score=61.99  Aligned_cols=47  Identities=11%  Similarity=0.021  Sum_probs=35.1

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      .+.+..-.+|.+|+.|+ ..|||+|++..+.+.++.++   .++.+..+..
T Consensus        89 ~i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~  135 (241)
T 1v58_A           89 WLLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLV  135 (241)
T ss_dssp             CEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEEC
T ss_pred             CceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEEC
Confidence            35555556788899999 99999999999998876653   3576665543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.85  E-value=0.0024  Score=63.69  Aligned_cols=43  Identities=16%  Similarity=0.080  Sum_probs=35.0

Q ss_pred             cCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        268 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       268 ~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      ..+++.+..|| +.|||+|+...|.++++..++.  ++.+.-|..|
T Consensus       115 ~~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~  157 (521)
T 1hyu_A          115 IDGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG  157 (521)
T ss_dssp             CCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT
T ss_pred             cCCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEech
Confidence            34677788888 9999999999999999987763  6777777766

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=96.79  E-value=0.00073  Score=57.90  Aligned_cols=42  Identities=17%  Similarity=0.107  Sum_probs=35.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      .|+++|+.|| ..|||+|....+.|.++.+++.. ++.+..+..
T Consensus        21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            5688899999 99999999999999999888754 577766665

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=96.78  E-value=0.0015  Score=52.39  Aligned_cols=43  Identities=9%  Similarity=-0.031  Sum_probs=35.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .++++++.|| ++ |.+|....|.|.++.++|+++ +.++-|++|.
T Consensus        22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~   64 (133)
T 2djk_A           22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA   64 (133)
T ss_dssp             TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT
T ss_pred             CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH
Confidence            4578999999 88 678999999999999988654 7888888763

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=96.74  E-value=0.00053  Score=62.82  Aligned_cols=37  Identities=8%  Similarity=0.095  Sum_probs=28.1

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHH
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE  299 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~  299 (384)
                      .+.+++..++..++.|| ++|||+|+...|.++++.++
T Consensus       189 ~~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~  225 (291)
T 3kp9_A          189 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQ  225 (291)
T ss_dssp             HHHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHH
Confidence            45555554444468899 99999999999999988644

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=96.67  E-value=0.00087  Score=58.54  Aligned_cols=38  Identities=13%  Similarity=0.040  Sum_probs=30.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  121 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs  121 (384)
                      .+|++|+.|| ..|||+|+...+.+.++.+    .++.+..+.
T Consensus        85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~  122 (211)
T 1t3b_A           85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLA  122 (211)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEE
Confidence            5688999999 9999999999999888433    367776553

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=96.64  E-value=0.0048  Score=50.89  Aligned_cols=44  Identities=14%  Similarity=0.006  Sum_probs=28.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .||+++|+|+ ++||+.|+.--...   .++.+.++ .++.++-+..|+
T Consensus        41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~   87 (153)
T 2dlx_A           41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDS   87 (153)
T ss_dssp             HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSS
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCC
Confidence            5899999999 99999998753322   22222222 256666666654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=96.53  E-value=0.0021  Score=49.82  Aligned_cols=27  Identities=11%  Similarity=0.029  Sum_probs=21.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRL  107 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~  107 (384)
                      .++++++ || ++|||+|+...+.|.++.
T Consensus        18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~   44 (116)
T 2e7p_A           18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVG   44 (116)
T ss_dssp             TSSSEEE-EE-CTTCHHHHHHHHHHHHHT
T ss_pred             cCCCEEE-EE-CCCChhHHHHHHHHHHcC
Confidence            4566665 88 999999999999888764

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=96.44  E-value=0.002  Score=55.23  Aligned_cols=43  Identities=16%  Similarity=0.119  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .|+++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+.++
T Consensus        24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            5789999999 99999999999999999888765 6777777765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=96.38  E-value=0.0048  Score=45.66  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRL  297 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~  297 (384)
                      |+.|| +.||++|....|.|.++.
T Consensus         3 vv~f~-a~~C~~C~~~~~~L~~~~   25 (87)
T 1ttz_A            3 LTLYQ-RDDCHLCDQAVEALAQAR   25 (87)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHTT
T ss_pred             EEEEE-CCCCchHHHHHHHHHHHH
Confidence            67788 999999999888887664

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.35  E-value=0.0014  Score=49.94  Aligned_cols=39  Identities=5%  Similarity=-0.061  Sum_probs=30.6

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .+++|+.|| +.|||.|....+.|.++.     .++.+.-|++|+
T Consensus        15 ~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~   53 (100)
T 1wjk_A           15 ALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITL   53 (100)
T ss_dssp             CCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTS
T ss_pred             CCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCC
Confidence            456778888 999999999888887654     348888888873

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=96.25  E-value=0.0022  Score=46.65  Aligned_cols=38  Identities=8%  Similarity=-0.105  Sum_probs=30.3

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      |+.|+ ++|||+|....+.|.++.+++  .++.+..|+.+.
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~vdi~~   40 (85)
T 1ego_A            3 TVIFG-RSGCPYCVRAKDLAEKLSNER--DDFQYQYVDIRA   40 (85)
T ss_dssp             EEEEC-CTTSTHHHHHHHHHHHHHHHH--SSCEEEEECHHH
T ss_pred             EEEEe-CCCCCCHHHHHHHHHHHHhcC--CCceEEEEeccc
Confidence            56677 999999999999999988765  468887776643

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.25  E-value=0.0023  Score=54.55  Aligned_cols=42  Identities=10%  Similarity=-0.058  Sum_probs=33.8

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      .++++|+.|| ..+||+|....+.+.++.+++.. ++.+..+..
T Consensus        24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            5677888888 99999999999999998887753 576665554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.93  E-value=0.0021  Score=48.85  Aligned_cols=39  Identities=5%  Similarity=-0.061  Sum_probs=29.8

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++|+.|+ +.|||+|....+.|.++.     .++.+.-|.+|+
T Consensus        15 ~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~   53 (100)
T 1wjk_A           15 ALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITL   53 (100)
T ss_dssp             CCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTS
T ss_pred             CCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCC
Confidence            346778888 999999998888877653     347788888773

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=95.89  E-value=0.014  Score=55.32  Aligned_cols=45  Identities=4%  Similarity=-0.091  Sum_probs=35.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHH------HHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEI------LAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~------~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| +.||++|...-      |.+.++.+.++..++.+..|..+.
T Consensus        29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~   79 (367)
T 3us3_A           29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK   79 (367)
T ss_dssp             HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT
T ss_pred             hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc
Confidence            3579999999 99999874332      578888888876678888888775

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.88  E-value=0.0057  Score=47.16  Aligned_cols=39  Identities=10%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         82 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        82 ~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|+.|| +.|||+|..-.+.|.++.+++   ++.+.-|.+|.
T Consensus        30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~   68 (107)
T 2fgx_A           30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG   68 (107)
T ss_dssp             CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT
T ss_pred             cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence            4678888 999999999999999987764   57777777774

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.80  E-value=0.0047  Score=47.63  Aligned_cols=39  Identities=10%  Similarity=0.086  Sum_probs=31.9

Q ss_pred             eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        272 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       272 ~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .+|+.|| +.||+.|....+.|.++.+++   ++.+.-|++|.
T Consensus        30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~   68 (107)
T 2fgx_A           30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG   68 (107)
T ss_dssp             CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT
T ss_pred             cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence            4577888 999999999999999988764   47777777773

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=95.62  E-value=0.021  Score=47.71  Aligned_cols=51  Identities=8%  Similarity=-0.024  Sum_probs=39.9

Q ss_pred             ceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeC
Q psy17178         71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASV  122 (384)
Q Consensus        71 ~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~  122 (384)
                      ..+.+.+..++.+|+.|+ ..+||+|....+.+.++.+++.+ .++.++....
T Consensus        18 ~~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           18 TGLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             SSEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CCcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            346666667888888888 99999999999999999888843 3477776554

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=95.59  E-value=0.0069  Score=51.88  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=36.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .++++|+.|| ..|||.|....|.+.++.+++.+ ++.+.-+.++
T Consensus        23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            4789999999 99999999999999999888765 5777666654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=95.57  E-value=0.0088  Score=50.91  Aligned_cols=42  Identities=14%  Similarity=0.005  Sum_probs=34.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      .|+++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+..
T Consensus        24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            5789999999 99999999999999998888765 566665544

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=95.44  E-value=0.015  Score=41.64  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=25.1

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      ++.|| ++|||.|....+.|.+       .++.+..+++|.
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   35 (81)
T 1h75_A            3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR   35 (81)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence            45677 9999999988777664       357777788774

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=95.30  E-value=0.0041  Score=44.84  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=25.6

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +..|| ++|||+|+...+.+.++.++   .++.+..+.+|
T Consensus         4 ~~~f~-~~~C~~C~~~~~~l~~~~~~---~~~~~~~~~v~   39 (80)
T 2k8s_A            4 KAIFY-HAGCPVCVSAEQAVANAIDP---SKYTVEIVHLG   39 (80)
T ss_dssp             EEEEE-ECSCHHHHHHHHHHHHHSCT---TTEEEEEEETT
T ss_pred             eEEEe-CCCCCchHHHHHHHHHHHHh---cCCeEEEEEec
Confidence            56677 99999999999988876543   34444444444

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=95.27  E-value=0.018  Score=51.20  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             CCCeEEEEEEeC--CCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYPL--DFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~a--~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~  314 (384)
                      .+++++|.|| +  +||+    ..|.+.++.+++++ .++.|..|++|+
T Consensus        21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~   64 (240)
T 2qc7_A           21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISD   64 (240)
T ss_dssp             GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCC
T ss_pred             CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCc
Confidence            4579999999 8  9998    88999999998874 457788887663

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=95.27  E-value=0.019  Score=45.76  Aligned_cols=43  Identities=9%  Similarity=-0.031  Sum_probs=34.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .++++++.|| +. |.+|+...|.|.++.++|+.+ +.++-|++|.
T Consensus        22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~   64 (133)
T 2djk_A           22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA   64 (133)
T ss_dssp             TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT
T ss_pred             CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH
Confidence            3578999999 77 678999999999999988643 7777776653

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=95.22  E-value=0.011  Score=50.64  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=35.2

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .++++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+.++
T Consensus        23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            4688999999 99999999999999998887765 5666666554

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=95.19  E-value=0.018  Score=41.19  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=24.9

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++.|+ ++|||+|+...+.|.+       .++.+..|+.|.
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   35 (81)
T 1h75_A            3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR   35 (81)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence            45677 9999999998777765       356667777764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.09  E-value=0.042  Score=43.65  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             EEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        276 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       276 ~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      .|+ +.|||.|+...+.|.++       ++.+..+.+|.
T Consensus        31 vf~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid~   61 (130)
T 2cq9_A           31 IFS-KTSCSYCTMAKKLFHDM-------NVNYKVVELDL   61 (130)
T ss_dssp             EEE-CSSCSHHHHHHHHHHHH-------TCCCEEEETTT
T ss_pred             EEE-cCCChHHHHHHHHHHHc-------CCCcEEEECcC
Confidence            377 99999999888877664       34445556553

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=95.06  E-value=0.0037  Score=53.90  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=35.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .++++||.|| +.|||+|....|.+   .++.+++.+ ++.+.-+.++
T Consensus       112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~  157 (197)
T 1un2_A          112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (197)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence            4688999999 99999999999988   888887753 5777777765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.97  E-value=0.025  Score=56.19  Aligned_cols=42  Identities=17%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++..+..|| +.|||+|+...|.++++..++.  ++.+.-|..|.
T Consensus       117 ~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~  158 (521)
T 1hyu_A          117 GDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT  158 (521)
T ss_dssp             SCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT
T ss_pred             CCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechh
Confidence            556778888 9999999999999999887764  68888888775

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=94.88  E-value=0.046  Score=48.75  Aligned_cols=42  Identities=17%  Similarity=0.074  Sum_probs=33.7

Q ss_pred             CCCeEEEEEEe-CCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCCC
Q psy17178        269 YGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDS  314 (384)
Q Consensus       269 ~Gk~vvl~F~~-a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d~  314 (384)
                      .+++++|.||. ++||+    ..|.+.++.+++++  .++.|.-|+.|.
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~   76 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKD   76 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECS
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            45789999985 78997    89999999999875  467777777664

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=94.83  E-value=0.03  Score=39.17  Aligned_cols=33  Identities=6%  Similarity=0.115  Sum_probs=24.4

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      ++.|+ +.|||.|....+.|+++       ++.+..+.++.
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~di~~   35 (75)
T 1r7h_A            3 ITLYT-KPACVQCTATKKALDRA-------GLAYNTVDISL   35 (75)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETTT
T ss_pred             EEEEe-CCCChHHHHHHHHHHHc-------CCCcEEEECCC
Confidence            45566 99999999888877643       56677777764

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=94.77  E-value=0.016  Score=42.83  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=19.3

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhH
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRL  107 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~  107 (384)
                      |+.|| +.||++|+...|.|.++.
T Consensus         3 vv~f~-a~~C~~C~~~~~~L~~~~   25 (87)
T 1ttz_A            3 LTLYQ-RDDCHLCDQAVEALAQAR   25 (87)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHTT
T ss_pred             EEEEE-CCCCchHHHHHHHHHHHH
Confidence            67788 999999999888887654

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=94.68  E-value=0.0056  Score=52.73  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .++++||.|| +.|||+|..-.|.+   .++.+++.+ ++.+.-+.++
T Consensus       112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~  157 (197)
T 1un2_A          112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (197)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence            5789999999 99999999999988   887777753 5777666664

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=94.57  E-value=0.036  Score=41.86  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRL  297 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~  297 (384)
                      ++.|+ ++|||.|....+.|.++.
T Consensus        14 v~~f~-~~~C~~C~~~~~~L~~~~   36 (105)
T 1kte_A           14 VVVFI-KPTCPFCRKTQELLSQLP   36 (105)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHSC
T ss_pred             EEEEE-cCCCHhHHHHHHHHHHcC
Confidence            55677 999999998888777653

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=94.29  E-value=0.054  Score=44.09  Aligned_cols=20  Identities=20%  Similarity=0.228  Sum_probs=16.2

Q ss_pred             EEEeCCCCcCchHhHHHHHHH
Q psy17178        276 FFYPLDFTFVCPTEILAFNDR  296 (384)
Q Consensus       276 ~F~~a~~c~~C~~~~~~l~~l  296 (384)
                      .|+ ++|||.|....+.|.++
T Consensus        53 vf~-~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           53 IFS-KTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             EEE-CTTCHHHHHHHHHHHHH
T ss_pred             EEE-CCCChhHHHHHHHHHHc
Confidence            377 99999999888877654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=94.20  E-value=0.039  Score=42.64  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=16.9

Q ss_pred             EEEEEEeCCCCcCchHhHHHHHH
Q psy17178        273 LVFFFYPLDFTFVCPTEILAFND  295 (384)
Q Consensus       273 vvl~F~~a~~c~~C~~~~~~l~~  295 (384)
                      .|+.|+ ++|||.|....+.|.+
T Consensus        20 ~vv~f~-~~~Cp~C~~~~~~L~~   41 (114)
T 2hze_A           20 KVTIFV-KYTCPFCRNALDILNK   41 (114)
T ss_dssp             CEEEEE-CTTCHHHHHHHHHHTT
T ss_pred             CEEEEE-eCCChhHHHHHHHHHH
Confidence            456677 9999999987776654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=94.19  E-value=0.048  Score=48.40  Aligned_cols=40  Identities=13%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             CCCeEEEEEeeC--CCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPL--DFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~--~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d  123 (384)
                      .+++++|.|| +  .||+    -.|.+.++.++++. .++.+.-|.+|
T Consensus        21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd   63 (240)
T 2qc7_A           21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGIS   63 (240)
T ss_dssp             GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCC
T ss_pred             CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            3578999999 7  8888    78888998888864 35666667654

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=94.15  E-value=0.053  Score=37.88  Aligned_cols=33  Identities=6%  Similarity=0.115  Sum_probs=24.2

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++.|+ +.|||+|+...+.|.++       |+.+..+..+.
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~di~~   35 (75)
T 1r7h_A            3 ITLYT-KPACVQCTATKKALDRA-------GLAYNTVDISL   35 (75)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETTT
T ss_pred             EEEEe-CCCChHHHHHHHHHHHc-------CCCcEEEECCC
Confidence            45566 99999999988877653       56666677664

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=93.98  E-value=0.07  Score=43.48  Aligned_cols=41  Identities=22%  Similarity=0.091  Sum_probs=30.2

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  310 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I  310 (384)
                      +.+..-.|+++|+.|. ..+||.|....+.+.++      .+++++.+
T Consensus         7 i~~~~~~a~~~vv~f~-D~~Cp~C~~~~~~l~~l------~~v~v~~~   47 (147)
T 3gv1_A            7 IKEVRGNGKLKVAVFS-DPDCPFCKRLEHEFEKM------TDVTVYSF   47 (147)
T ss_dssp             EEEEETTCCEEEEEEE-CTTCHHHHHHHHHHTTC------CSEEEEEE
T ss_pred             eeeecCCCCEEEEEEE-CCCChhHHHHHHHHhhc------CceEEEEE
Confidence            4444446788888888 99999999999988664      34665544

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=93.46  E-value=0.096  Score=40.77  Aligned_cols=35  Identities=11%  Similarity=0.198  Sum_probs=21.1

Q ss_pred             EEEEEeCCCCcCchHh-HHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        274 VFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      |+.|+ ++|||.|... .+.|.++.    ...+.+..+.+|
T Consensus        27 Vvvf~-~~~Cp~C~~alk~~L~~~~----~~~i~~~~vdid   62 (118)
T 3c1r_A           27 IFVAS-KTYCPYCHAALNTLFEKLK----VPRSKVLVLQLN   62 (118)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHTTSC----CCGGGEEEEEGG
T ss_pred             EEEEE-cCCCcCHHHHHHHHHHHcC----CCCCCeEEEECc
Confidence            44577 9999999876 44443221    111666666665

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=93.16  E-value=0.13  Score=45.84  Aligned_cols=41  Identities=17%  Similarity=0.071  Sum_probs=30.2

Q ss_pred             CCCeEEEEEee-CCCCCCchHHHHHHHHhHHHHHh--CCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~-~~~cp~C~~~~~~l~~~~~~~~~--~~v~vi~Vs~d  123 (384)
                      .+++++|.||. ++||+    -.|.+.++.++++.  .++.+.-|..|
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d   75 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVK   75 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            35789999995 78887    78888888888864  35666666544

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=92.82  E-value=0.043  Score=46.52  Aligned_cols=39  Identities=13%  Similarity=-0.061  Sum_probs=31.8

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  312 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~  312 (384)
                      +|++||.|| ..|||+|....|.+.++.+++   ++.+.-+.+
T Consensus        22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred             CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence            688999999 999999999999999999988   344444443

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=92.79  E-value=0.025  Score=48.14  Aligned_cols=43  Identities=14%  Similarity=0.069  Sum_probs=32.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .++++|+.|| ..|||+|....|.+   .++.+++.+ +++++-+...
T Consensus        13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A           13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            4578899999 99999999999986   466665543 5777777653

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=92.58  E-value=0.044  Score=46.43  Aligned_cols=39  Identities=13%  Similarity=-0.061  Sum_probs=31.4

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      ++++|+.|| ..|||+|..-.|.+.++.+++   ++.+.-+.+
T Consensus        22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred             CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence            688999999 999999999889999998888   354444443

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=92.55  E-value=0.2  Score=36.45  Aligned_cols=40  Identities=5%  Similarity=0.012  Sum_probs=26.3

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhc
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  132 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~  132 (384)
                      ++.|+ +.|||.|+...+.|.+       .++.+..|.+| .+..+++.
T Consensus         8 v~~y~-~~~C~~C~~~~~~L~~-------~~i~~~~vdv~-~~~~~~l~   47 (89)
T 2klx_A            8 IILYT-RPNCPYCKRARDLLDK-------KGVKYTDIDAS-TSLRQEMV   47 (89)
T ss_dssp             EEEES-CSCCTTTHHHHHHHHH-------HTCCEEEECSC-HHHHHHHH
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECC-HHHHHHHH
Confidence            45566 8999999987776655       25666667777 33333343

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=92.48  E-value=0.03  Score=47.58  Aligned_cols=43  Identities=14%  Similarity=0.069  Sum_probs=32.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .++++|+.|| ..|||+|..-.|.+   .++.+++.+ ++.++-+..+
T Consensus        13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A           13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            4578999999 99999999998886   455555543 5776666543

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=92.25  E-value=0.12  Score=38.89  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=17.3

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDR  296 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l  296 (384)
                      ++.|+ ++|||.|....+.|.++
T Consensus        24 v~ly~-~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           24 VIMYG-LSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHH
T ss_pred             EEEEc-CCCCchHHHHHHHHHHc
Confidence            45577 99999999888877654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=92.11  E-value=0.024  Score=42.88  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=18.4

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhH
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRL  107 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~  107 (384)
                      |+.|+ ++|||+|+...+.|.++.
T Consensus        14 v~~f~-~~~C~~C~~~~~~L~~~~   36 (105)
T 1kte_A           14 VVVFI-KPTCPFCRKTQELLSQLP   36 (105)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHSC
T ss_pred             EEEEE-cCCCHhHHHHHHHHHHcC
Confidence            56677 999999999888777643

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=91.99  E-value=0.29  Score=35.49  Aligned_cols=32  Identities=3%  Similarity=0.095  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      ++.|+ ++|||.|....+.|.+.       ++.+.-+.+|
T Consensus         8 v~~y~-~~~C~~C~~~~~~L~~~-------~i~~~~vdv~   39 (89)
T 2klx_A            8 IILYT-RPNCPYCKRARDLLDKK-------GVKYTDIDAS   39 (89)
T ss_dssp             EEEES-CSCCTTTHHHHHHHHHH-------TCCEEEECSC
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence            45566 89999999877766543       4666677777

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=91.43  E-value=0.26  Score=37.70  Aligned_cols=22  Identities=14%  Similarity=0.230  Sum_probs=16.6

Q ss_pred             EEEEEeCCCCcCchHhHHHHHHH
Q psy17178        274 VFFFYPLDFTFVCPTEILAFNDR  296 (384)
Q Consensus       274 vl~F~~a~~c~~C~~~~~~l~~l  296 (384)
                      |+.|+ ++|||.|....+.|.++
T Consensus        21 v~vy~-~~~Cp~C~~~~~~L~~~   42 (113)
T 3rhb_A           21 VVIYS-KTWCSYCTEVKTLFKRL   42 (113)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHT
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc
Confidence            44577 89999999877766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	9e-30
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	5e-29
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	1e-27
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	6e-27
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	2e-26
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	2e-26
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	3e-23
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	2e-22
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	1e-22
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	2e-21
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	6e-22
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	2e-20
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	2e-21
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	5e-21
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	4e-20
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	7e-20
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	2e-18
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	2e-18
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	4e-18
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	5e-17
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	2e-15
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	8e-15
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	8e-11
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	1e-10
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	6e-10
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	2e-09
d1nm3a2	163	c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr	3e-08
d1nm3a2	163	c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr	2e-05
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	2e-05
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	3e-04
d1tp9a1	162	c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b	1e-04
d1tp9a1	162	c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b	1e-04
d2cx4a1	160	c.47.1.10 (A:4-163) Bacterioferritin comigratory p	0.004

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 9e-30
 Identities = 77/119 (64%), Positives = 96/119 (80%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+F +
Sbjct: 7   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK 66

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   
Sbjct: 67  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAY 125

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-29
 Identities = 79/122 (64%), Positives = 98/122 (80%), Gaps = 1/122 (0%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
           KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+F ++ 
Sbjct: 9   KPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG 68

Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGS 173
            EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   RG 
Sbjct: 69  CEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGL 128

Query: 174 LL 175
            +
Sbjct: 129 FI 130

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  105 bits (263), Expect = 1e-27
 Identities = 60/134 (44%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 245 KPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 303
            PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  I
Sbjct: 7   HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI 66

Query: 304 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDK 363
             EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G     
Sbjct: 67  GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRG 126

Query: 364 YCLECYKMVIVYWF 377
             +   K  +    
Sbjct: 127 LFIIDPKQNLRQIT 140

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  103 bits (258), Expect = 6e-27
 Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 2/123 (1%)

Query: 55  KPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
            PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  I
Sbjct: 7   HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI 66

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
             EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G   RG
Sbjct: 67  GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRG 126

Query: 173 SLL 175
             +
Sbjct: 127 LFI 129

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 80/122 (65%), Positives = 96/122 (78%), Gaps = 1/122 (0%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
           + AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EFH +N
Sbjct: 1   QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN 60

Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGS 173
            EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  +RG 
Sbjct: 61  CEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGL 120

Query: 174 LL 175
            +
Sbjct: 121 FI 122

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 79/117 (67%), Positives = 93/117 (79%)

Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
           + AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EFH +N
Sbjct: 1   QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN 60

Query: 305 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
            EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  L
Sbjct: 61  CEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 117

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 93.4 bits (231), Expect = 3e-23
 Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 2/118 (1%)

Query: 57  APFWQGTAVV-DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
           AP ++  AV  D    E+ LSD+ G KY++ +FYPLDFTFVCP+EI+A +  L+ F + N
Sbjct: 2   APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 61

Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
            E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V  ++   +R 
Sbjct: 62  VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRA 119

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 90.7 bits (224), Expect = 2e-22
 Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 2/132 (1%)

Query: 247 APFWQGTAVV-DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
           AP ++  AV  D    E+ LSD+ G KY++ +FYPLDFTFVCP+EI+A +  L+ F + N
Sbjct: 2   APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 61

Query: 305 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKY 364
            E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V  ++        
Sbjct: 62  VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFV 121

Query: 365 CLECYKMVIVYW 376
            ++   +V    
Sbjct: 122 LIDKQGVVQHLL 133

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 92.2 bits (228), Expect = 1e-22
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
           ++     ++  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  +
Sbjct: 3   INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK 62

Query: 303 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLD 362
           +  +V + S D+HFTH AW         + K+K  ++ D T  ++ ++     D+G    
Sbjct: 63  LGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADR 119

Query: 363 KYCLECYKMVIVYWF 377
              +   + +I    
Sbjct: 120 ATFVVDPQGIIQAIE 134

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 88.3 bits (218), Expect = 2e-21
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
                ++  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  ++ 
Sbjct: 5   TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG 64

Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP 169
            +V + S D+HFTH AW         + K+K  ++ D T  ++ ++     D+G 
Sbjct: 65  VDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGL 116

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score = 89.6 bits (221), Expect = 6e-22
 Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 1/136 (0%)

Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           ++ PAP +   A++ +G  K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D  + F 
Sbjct: 5   LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFA 64

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           +INTEV++ S DS ++HL W +  RK+GGLG + IP+L+D T  I+  YGV   D G   
Sbjct: 65  EINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAY 124

Query: 362 DKYCLECYKMVIVYWF 377
               +      +    
Sbjct: 125 RGVFIIDPNGKLRQII 140

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 60/123 (48%), Positives = 83/123 (67%), Gaps = 2/123 (1%)

Query: 55  KPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
            PAP +   A++ +G  K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D  + F +I
Sbjct: 7   HPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI 66

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
           NTEV++ S DS ++HL W +  RK+GGLG + IP+L+D T  I+  YGV   D G   RG
Sbjct: 67  NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRG 126

Query: 173 SLL 175
             +
Sbjct: 127 VFI 129

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 88.0 bits (217), Expect = 2e-21
 Identities = 51/124 (41%), Positives = 79/124 (63%), Gaps = 3/124 (2%)

Query: 55  KPAPFWQGTAVVDGQ--LKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
           K AP ++  AV+      +  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R+++FH
Sbjct: 5   KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH 64

Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVR 171
           +    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   +   +R
Sbjct: 65  EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALR 124

Query: 172 GSLL 175
           G+ L
Sbjct: 125 GAFL 128

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 86.8 bits (214), Expect = 5e-21
 Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 4/138 (2%)

Query: 243 VSKPAPFWQGTAVVDGQ--LKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEE 299
           V+K AP ++  AV+      +  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R+++
Sbjct: 3   VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKD 62

Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 359
           FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   +   
Sbjct: 63  FHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAI- 121

Query: 360 TLDKYCLECYKMVIVYWF 377
            L    L    M + +  
Sbjct: 122 ALRGAFLIDKNMKVRHAV 139

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 85.6 bits (211), Expect = 4e-20
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
           +    P F   TA   G   + +L  Y    + + F +P DFT VC TE+       E+F
Sbjct: 4   LGATFPNF---TAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 60

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
            ++N +++  S +S  +H  W+   +  G L K +IP++ D + +++      + +Q   
Sbjct: 61  LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLK-IMDEQEKD 119

Query: 361 LDKYCLECYKMVIV 374
           +    L C  +  +
Sbjct: 120 ITGLPLTCRCLFFI 133

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 85.2 bits (210), Expect = 7e-20
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 52  NLSKPAP-FWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEE 109
           +L    P F   TA   G   + +L  Y    + + F +P DFT VC TE+       E+
Sbjct: 3   HLGATFPNF---TAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHED 59

Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP 169
           F ++N +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +  
Sbjct: 60  FLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKD 119

Query: 170 VRGSLLS 176
           + G  L+
Sbjct: 120 ITGLPLT 126

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 2e-18
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
             AP ++        +  I+  D+ G  + + F +P DFT VC TE+        EF + 
Sbjct: 5   DVAPNFEANT----TVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 60

Query: 114 NTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
           N +++A S+DS   HLAW    N    E    KL  P++ D   ++++  G+    +   
Sbjct: 61  NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDE 120

Query: 171 RGSLLSTAIFVY 182
           +G  ++  +   
Sbjct: 121 KGMPVTARVVFV 132

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 2e-18
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +   AP ++        +  I+  D+ G  + + F +P DFT VC TE+        EF 
Sbjct: 3   LGDVAPNFEANT----TVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 58

Query: 302 QINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
           + N +++A S+DS   HLAW    N    E    KL  P++ D   ++++  G+    + 
Sbjct: 59  KRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 118

Query: 359 HTLDKYCLECYKMVIV 374
                  +    + + 
Sbjct: 119 DE-KGMPVTARVVFVF 133

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 80.6 bits (198), Expect = 4e-18
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRL 297
           P + +  P  +    V      IKL D+Y   GK+ V F +P DFT VC TE ++F  R 
Sbjct: 1   PLIGERFPEME----VTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRY 56

Query: 298 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 357
           E+F ++  +++  SVDS F+H+ W     +  G  ++  P+++D    ++   G+  ++ 
Sbjct: 57  EDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIG-VRIPFPIIADPQGTVARRLGLLHAES 115

Query: 358 GH 359
             
Sbjct: 116 AT 117

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 77.5 bits (190), Expect = 5e-17
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 66  VDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 122
           V      IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SV
Sbjct: 12  VTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSV 71

Query: 123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
           DS F+H+ W     +  G  ++  P+++D    ++   G+  ++    
Sbjct: 72  DSVFSHIKWKEWIERHIG-VRIPFPIIADPQGTVARRLGLLHAESATH 118

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 243 VSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           +      ++  A   G+   E+  +D  GK+ +  FYP DF+FVCPTE+        E  
Sbjct: 3   IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELK 62

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           ++  EV + S D+HF H AW         +G ++  ++ D +  IS  + V   + G  
Sbjct: 63  KLGVEVYSVSTDTHFVHKAW---HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLA 118

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 69.5 bits (169), Expect = 8e-15
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 55  KPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
                ++  A   G+   E+  +D  GK+ +  FYP DF+FVCPTE+        E  ++
Sbjct: 5   TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL 64

Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
             EV + S D+HF H AW         +G ++  ++ D +  IS  + V   + G   RG
Sbjct: 65  GVEVYSVSTDTHFVHKAW---HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121

Query: 173 SLL 175
           + +
Sbjct: 122 TFI 124

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 57.9 bits (139), Expect = 8e-11
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE 299
            P V +    +    +V   L ++ L+D+  K  V   +P   T VC T +  FN +  +
Sbjct: 15  FPQVGEIVENFI---LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAK 71

Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
                T V+  S D  F    +      E               H +    GV +  
Sbjct: 72  LSN--TIVLCISADLPFAQARFCGAEGIENAKTVSTFR-----NHALHSQLGVDIQT 121

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 7/115 (6%)

Query: 65  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
           +V   L ++ L+D+  K  V   +P   T VC T +  FN +  +     T V+  S D 
Sbjct: 27  LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN--TIVLCISADL 84

Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAI 179
            F    +      E               H +    GV +        +  +  +
Sbjct: 85  PFAQARFCGAEGIENAKTVSTFR-----NHALHSQLGVDIQTGPLAGLTSRAVIV 134

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.5 bits (132), Expect = 6e-10
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 15/146 (10%)

Query: 243 VSKPAPFWQGTAVVDGQ------------LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEI 290
           +    P +Q TA++ G                I   ++ GK+ V FF+P DFTFVCPTEI
Sbjct: 5   IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEI 64

Query: 291 LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 350
            AF+   +EF   + +++  S+DS F H  W            L  P+LSD+  ++S   
Sbjct: 65  AAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDL---KTLPFPMLSDIKRELSQAA 121

Query: 351 GVYLSDQGHTLDKYCLECYKMVIVYW 376
           GV  +D       + ++    +    
Sbjct: 122 GVLNADGVADRVTFIVDPNNEIQFVS 147

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 67  DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 126
                 I   ++ GK+ V FF+P DFTFVCPTEI AF+   +EF   + +++  S+DS F
Sbjct: 31  GDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEF 90

Query: 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLL 175
            H  W            L  P+LSD+  ++S   GV  +D    R + +
Sbjct: 91  AHFQWRAQHNDL---KTLPFPMLSDIKRELSQAAGVLNADGVADRVTFI 136

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 7/143 (4%)

Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEE---F 300
           K  P          +  ++  S+ +  K ++ F  P  FT  C +  L   + L      
Sbjct: 5   KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK 64

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
           + ++  +V +  D+   +    +   +             + T  + +  G      G  
Sbjct: 65  YGVDDILVVSVNDTFVMNAWKEDEKSEN---ISFIPDGNGEFTEGMGMLVGKEDLGFGKR 121

Query: 361 LDKYCLECYKMVIVYWFERGNCD 383
             +Y +     V+   F   N  
Sbjct: 122 SWRYSMLVKNGVVEKMFIEPNEP 144

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 11/131 (8%)

Query: 55  KPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEE---F 110
           K  P          +  ++  S+ +  K ++ F  P  FT  C +  L   + L      
Sbjct: 5   KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK 64

Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
           + ++  +V +  D+   +    +   +        I  + D   + +   G+ +  +   
Sbjct: 65  YGVDDILVVSVNDTFVMNAWKEDEKSE-------NISFIPDGNGEFTEGMGMLVGKEDLG 117

Query: 171 RGSLLSTAIFV 181
            G        +
Sbjct: 118 FGKRSWRYSML 128

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 6/133 (4%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
           V    P             ++ L++ + GK  V F  P  FT  C    L       E  
Sbjct: 5   VGDAIP--AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62

Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
           +     V A       + A+V          + K+ LL+D T     +  + L D   ++
Sbjct: 63  KAKGVQVVA---CLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSI 119

Query: 362 DKYCLECYKMVIV 374
                     ++V
Sbjct: 120 FGNRRLKRFSMVV 132

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 63  TAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS 121
                    ++ L++ + GK  V F  P  FT  C    L       E  +     V A 
Sbjct: 13  EVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVAC 72

Query: 122 VDSHFTHLAW 131
           +  +   +  
Sbjct: 73  LSVNDAFVTG 82

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 67  DGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 125
             QL+E+ +     GK ++ F  P  FT  C  + +          +         +  +
Sbjct: 21  QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN 80

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 257 DGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 315
             QL+E+ +     GK ++ F  P  FT  C  + +          +         +  +
Sbjct: 21  QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN 80

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
           + + AP +    + +   + + L +    G+  V  F+P  F+ VC  E+  F D++ + 
Sbjct: 4   LGEKAPDFT---LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQL 60

Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
            + N EV+A SVDS +    + +         +L   LLSD   ++   Y VY  D
Sbjct: 61  EKANAEVLAISVDSPWCLKKFKDE-------NRLAFNLLSDYNREVIKLYNVYHED 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.97
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.97
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.97
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.96
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.96
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.96
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.96
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.96
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.96
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.96
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.96
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.96
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.96
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.95
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.95
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.95
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.94
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.94
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.94
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.94
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.94
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.94
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.94
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.93
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.93
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.93
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.92
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.92
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.92
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.92
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.92
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.92
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.91
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.91
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.91
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.91
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.91
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.91
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.91
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.9
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.9
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.9
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.9
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.88
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.88
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.87
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.87
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.86
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.85
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.85
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.85
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.85
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.84
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.84
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.83
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.83
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.83
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.83
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.82
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.81
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.81
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.8
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.79
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.78
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.78
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.77
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.77
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.75
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.66
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.66
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.64
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.63
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.58
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.57
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.56
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.53
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.47
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.97
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.96
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.86
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.84
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.84
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.8
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.8
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.79
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.77
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.77
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.75
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.73
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.73
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.72
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.71
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.7
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.69
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.67
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.66
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.63
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.61
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.54
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.53
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.52
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.51
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.39
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.39
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.37
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.37
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.36
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.34
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.33
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.33
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.32
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.29
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.28
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.25
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.25
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.25
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.24
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.24
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.24
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.22
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.22
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.21
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.19
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.15
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.11
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.06
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.0
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	97.88
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.78
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.6
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.54
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.51
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.51
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.48
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.46
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.45
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.43
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.33
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.11
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.08
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	96.89
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	96.44
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.34
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	94.82
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	94.7
d1wjka_	100	Thioredoxin-like structure containing protein C330	94.6
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	94.53
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	93.52
d1wjka_	100	Thioredoxin-like structure containing protein C330	93.39
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	93.23
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	90.33
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	89.27
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	88.53
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	83.35
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	83.17

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=225.59  Aligned_cols=150  Identities=53%  Similarity=0.927  Sum_probs=133.8

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .++++|++||+|+|+++.|++|++++|+|++||++||+|||++|||+|..|+..|++.+++|++.|++|++||.|+.+++
T Consensus         3 ~~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~   82 (197)
T d1qmva_           3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTH   82 (197)
T ss_dssp             TTBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CCCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHH
Confidence            45689999999999988788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccce
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWI  206 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk  206 (384)
                      ++|.+...+..+.++++||+++|++++++++||++....|     ...|++||||++|+||..   ..++...+++..
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g-----~~~R~tfiID~~g~Ir~~---~~~~~~~~r~~~  152 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG-----IAYRGLFIIDGKGVLRQI---TVNDLPVGRSVD  152 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEE---EEECTTBCCCHH
T ss_pred             HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCC-----eeeEEEEEECCCCcEEEE---EecCCCcccCHH
Confidence            9999987776666789999999999999999999876644     567999999999999754   445666666644

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.97  E-value=2.1e-30  Score=219.65  Aligned_cols=142  Identities=25%  Similarity=0.487  Sum_probs=122.0

Q ss_pred             cCCCCCCccEEEeeec-CccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178         52 NLSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  130 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~-~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~  130 (384)
                      .+|++||+|++++..+ .++++++|+|++||++||+|||++|||+|+.|+++|++.+++|++.|+++++||.|+++++++
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~   81 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKA   81 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHH
Confidence            3899999999998643 356789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      |.+.+...   .+++||+++|++++++++||++....|     ...|++||||++|+|+...   +++...+|+
T Consensus        82 ~~~~~~~~---~~~~fpll~D~~~~v~~~ygv~~~~~~-----~~~r~tfvID~~G~I~~~~---i~~~~~~r~  144 (166)
T d1we0a1          82 WHENSPAV---GSIEYIMIGDPSQTISRQFDVLNEETG-----LADRGTFIIDPDGVIQAIE---INADGIGRD  144 (166)
T ss_dssp             HHHSCHHH---HTCCSEEEECTTCHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEEE---EECTTSCCC
T ss_pred             Hhhhhhhh---cccccccccCcccHHHHHhCCCccccC-----cccceEEEECCCCcEEEEE---EcCCCCCCC
Confidence            98865322   168999999999999999999766533     5678999999999998653   345555554

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=3.1e-30  Score=223.40  Aligned_cols=147  Identities=42%  Similarity=0.776  Sum_probs=128.7

Q ss_pred             cCCCCCCccEEEeee-cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHh
Q psy17178         52 NLSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  130 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~-~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~  130 (384)
                      ..|.+||+|+++.+. |++|++++|+|++||++||+|||++|||+|..|++.|++++++|++.|++|++||.|+.+.+++
T Consensus         4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~   83 (194)
T d1uula_           4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA   83 (194)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhh
Confidence            578999999987643 6789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccce
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWI  206 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk  206 (384)
                      |.+..++....++++||+++|++++++++||++....|     ...|++||||++|+|+.+.   +++...+++..
T Consensus        84 ~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~-----~~~R~tfvID~~G~I~~~~---~~~~~~~r~~~  151 (194)
T d1uula_          84 WTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG-----VAYRGLFIIDPKQNLRQIT---VNDLPVGRDVD  151 (194)
T ss_dssp             HHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTT-----EECEEEEEECTTSBEEEEE---EECTTBCCCHH
T ss_pred             hhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCC-----ceEEEEEEECCCCeEEEEE---EecCCCCcCHH
Confidence            99887666566678999999999999999999876644     5568999999999998654   44556666643

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.3e-29  Score=213.22  Aligned_cols=143  Identities=57%  Similarity=1.006  Sum_probs=124.8

Q ss_pred             CCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccC
Q psy17178         55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  134 (384)
Q Consensus        55 ~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~  134 (384)
                      +.||+|+++++.|++|++++|+|++||++||+|||++|||+|..|++.|++.+++|++.|+++++||.|+.+.+++|.+.
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~   80 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT   80 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence            46999999988788999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        135 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       135 ~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      .......++++||+++|++++++++||+.....|     ...|++||||++|+|++..   +++...+++.
T Consensus        81 ~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g-----~~~R~tfvID~~G~I~~~~---i~~~~~~~~~  143 (158)
T d1zyea1          81 PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG-----LALRGLFIIDPNGVIKHLS---VNDLPVGRSV  143 (158)
T ss_dssp             CGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEEE---EECTTCCCCH
T ss_pred             hHhhccccccccccccccccHHHHHHHhccccCC-----ccccEEEEECCCCEEEEEE---EeCCCCCCCH
Confidence            6544444578999999999999999999766543     4568999999999998654   3455555553

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.96  E-value=2.1e-29  Score=214.13  Aligned_cols=146  Identities=42%  Similarity=0.795  Sum_probs=124.4

Q ss_pred             ccCCCCCCccEEEee-ecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         51 KNLSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~-~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      +++|++||+|+++++ .|++|++++|+|++||++||+|||++|||+|..|++.|++.+++|++.|+++++||.|+.+.+.
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~   82 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHL   82 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHH
Confidence            579999999997653 3679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRA  204 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~  204 (384)
                      +|.+..++......++||+++|+++.+++.||+.....|     ...|++||||++|+|+.+..+   +...+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g-----~~~r~tfvID~~G~Ir~~~~~---~~~~~~~  149 (167)
T d1e2ya_          83 QWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSG-----VAYRGVFIIDPNGKLRQIIIN---DMPIGRN  149 (167)
T ss_dssp             HHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTT-----EECEEEEEECTTSBEEEEEEE---CTTBCCC
T ss_pred             HHHhhHHHhcccccccccccccchhHHHHHcCCCcccCC-----CceeEEEEECCCCEEEEEEEc---CCCCCCC
Confidence            998765444334467999999999999999999765533     556899999999999876433   4444444

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=2e-29  Score=216.49  Aligned_cols=145  Identities=30%  Similarity=0.517  Sum_probs=126.7

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhh
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  131 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~  131 (384)
                      .+|++||+|+++++.|++.++++|+|++||++||+|||++|||+|..|++.|++.+++|++.|+++++||.|+.+++++|
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f   81 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW   81 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHH
Confidence            38999999999987777778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCcccee
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIR  207 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~  207 (384)
                      .+...+   ...++||+++|++++++++||++.+..|     ...|++||||++|+||..   .+++...+++...
T Consensus        82 ~~~~~~---~~~~~fpllsD~~~~v~~~yGv~~~~~g-----~~~r~tfiID~~G~Ir~~---~v~~~~~~r~~~e  146 (186)
T d1n8ja_          82 HSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEG-----LADRATFVVDPQGIIQAI---EVTAEGIGRDASD  146 (186)
T ss_dssp             HHHCTT---GGGCCSEEEECTTSHHHHHTTCEETTTT-----EECEEEEEECTTSBEEEE---EEECTTBCCCHHH
T ss_pred             hccccc---cccccccccccHHHHHHHHhCCCcccCC-----cceeeEEEECchheEEEE---eecCCCcccCHHH
Confidence            986422   2358999999999999999999876644     556999999999999865   3556666666443

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.96  E-value=7.3e-29  Score=210.06  Aligned_cols=136  Identities=25%  Similarity=0.427  Sum_probs=122.7

Q ss_pred             CCCCCCCCceeeeEEc-CcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d-~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      .+|+++|+|+++++.+ .++++++|+|++||++||+||++.|||+|..|++.|++++++|++.|++|++||.|+++.+++
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~   81 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKA   81 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHH
Confidence            4899999999997632 355789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      |.+.+....   +++||++.|++++++++||+.....+...|++||||++|+|++++...
T Consensus        82 ~~~~~~~~~---~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~  138 (166)
T d1we0a1          82 WHENSPAVG---SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINA  138 (166)
T ss_dssp             HHHSCHHHH---TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             Hhhhhhhhc---ccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcC
Confidence            998764332   689999999999999999998887778899999999999999987654

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=5e-29  Score=212.18  Aligned_cols=135  Identities=32%  Similarity=0.579  Sum_probs=116.5

Q ss_pred             cccCCCCCCccEEEeeecC------------ccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEE
Q psy17178         50 SKNLSKPAPFWQGTAVVDG------------QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV  117 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~------------~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~v  117 (384)
                      ++++|++||+|++++..++            .|+.++|++++||++||+|||++|||+|..|++.|++.+++|++.|+++
T Consensus         2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~v   81 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   81 (169)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             CCCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcce
Confidence            5789999999999987221            2278999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        118 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       118 i~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      ++||.|+.+.+++|.+.+.+.   ..++||+++|++++++++|||+... +     ...|++||||++|+|+++..
T Consensus        82 v~is~d~~~~~~~~~~~~~~~---~~~~f~ll~D~~~~v~~~ygv~~~~-~-----~~~r~~fvID~~G~I~~~~~  148 (169)
T d2bmxa1          82 LGVSIDSEFAHFQWRAQHNDL---KTLPFPMLSDIKRELSQAAGVLNAD-G-----VADRVTFIVDPNNEIQFVSA  148 (169)
T ss_dssp             EEEESSCHHHHHHHHHHCTTG---GGCCSCEEECTTSHHHHHHTCBCTT-S-----SBCEEEEEECTTSBEEEEEE
T ss_pred             eeccccchhhhhhhccccccc---ccceEEEEeccHHHHHHHcCCCccC-C-----ccceeEEEEcCCCEEEEEEE
Confidence            999999999999998755222   2589999999999999999996432 2     45689999999999986644

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.96  E-value=1.8e-28  Score=208.36  Aligned_cols=140  Identities=41%  Similarity=0.752  Sum_probs=127.4

Q ss_pred             CCCCCCCCCceeeeE-EcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l-~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      ..+|+++|+|+++.+ .|++|++++|+|++||++||+||+++|||+|..+++.|++++++|++.++.|++||.|+++++.
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~   82 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHL   82 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHH
Confidence            468999999996642 4889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|.+..+........+++++.|+++++++.||+.....+...|++||||++|+|++++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~  143 (167)
T d1e2ya_          83 QWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIIND  143 (167)
T ss_dssp             HHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             HHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcC
Confidence            9998876665555789999999999999999998877778899999999999999987654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.96  E-value=8.5e-29  Score=210.57  Aligned_cols=145  Identities=37%  Similarity=0.661  Sum_probs=123.0

Q ss_pred             ccCCCCCCccEEEeeecCc---cceEEccccCCC-eEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQ---LKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  126 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~---g~~~~l~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~  126 (384)
                      +.||++||||+++++ +++   ++.++|+|++|| ++||+|||++|||+|+.|++.|++.+++|++.|++|++||.|+.+
T Consensus         1 ~lVG~~APdF~l~~~-~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~   79 (170)
T d1zofa1           1 MVVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ   79 (170)
T ss_dssp             CCTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCCCcCCCcCcccc-cCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchh
Confidence            358999999999987 222   257999999996 899999999999999999999999999999999999999999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      .+++|.+..+.....++++||+++|++++++++||++... |     ...|++||||++|+|+...   +.+...+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~-~-----~~~r~tfvID~~G~I~~~~---~~~~~~~~~~  149 (170)
T d1zofa1          80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-A-----IALRGAFLIDKNMKVRHAV---INDLPLGRNA  149 (170)
T ss_dssp             HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-T-----EECEEEEEEETTTEEEEEE---EESSSCCCHH
T ss_pred             hHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccc-c-----ceeEEEEEEcCCCeEEEEE---EeCCCCCCCH
Confidence            9999998776555566789999999999999999997643 2     4568999999999998643   3344445553

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.3e-28  Score=204.50  Aligned_cols=135  Identities=60%  Similarity=1.001  Sum_probs=125.1

Q ss_pred             CCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcC
Q psy17178        245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  324 (384)
Q Consensus       245 ~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~  324 (384)
                      +.||+|+++++.|++|+.++|+|++||++||+||++.|||+|..|++.+++++++|.+.|++|++||.|+.+.+++|.+.
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~   80 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT   80 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence            47999999988789999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        325 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       325 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .+......+++||+++|+++.+.++||+.....|.+.|++||||++|+|++++..
T Consensus        81 ~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~  135 (158)
T d1zyea1          81 PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVN  135 (158)
T ss_dssp             CGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             hHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEe
Confidence            7655444588999999999999999999888778889999999999999998754

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-28  Score=211.37  Aligned_cols=140  Identities=56%  Similarity=0.946  Sum_probs=131.8

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      .++|+++|+|+++++.|++|+.++|+|++||++||+||++.|||.|..|+..|++.+++|++.|++|++||.|+++.+++
T Consensus         5 ~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~   84 (197)
T d1qmva_           5 ARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLA   84 (197)
T ss_dssp             BCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHh
Confidence            47999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      |.+..++..+..+++||+++|++++++++||++....+...|++||||++|+|++++.++
T Consensus        85 ~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~  144 (197)
T d1qmva_          85 WINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVND  144 (197)
T ss_dssp             HHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             hhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecC
Confidence            999987777776899999999999999999999888788899999999999999987653

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.96  E-value=1.7e-28  Score=212.40  Aligned_cols=138  Identities=43%  Similarity=0.754  Sum_probs=128.3

Q ss_pred             CCCCCCCCceeeeE-EcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l-~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      ..|.++|+|+++.+ .|++|++++|+|++||++||+||+++|||+|..|++.|++++++|++.|++|++||.|+.+.+++
T Consensus         4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~   83 (194)
T d1uula_           4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA   83 (194)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhh
Confidence            46889999998763 37899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |.+..+...+..+++||+++|++++++++||++....+...|+|||||++|+|++++..
T Consensus        84 ~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~  142 (194)
T d1uula_          84 WTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVN  142 (194)
T ss_dssp             HHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEE
T ss_pred             hhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEe
Confidence            99998777777789999999999999999999988888889999999999999998754

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.95  E-value=1.3e-28  Score=215.89  Aligned_cols=154  Identities=22%  Similarity=0.389  Sum_probs=130.0

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++++|++||+|++++. +++ ++++|+++ +|||+||+|||++|||+|.+|+..|++.+++|++.|++++|||.|+.+++
T Consensus         1 gi~iGd~aPdF~l~~~-~~~-g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh   78 (219)
T d1xcca_           1 GYHLGATFPNFTAKAS-GID-GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESH   78 (219)
T ss_dssp             CCCTTCBCCCCEECBT-TCS-SCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CCcCCCCCCCcEeecc-CCC-CcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHH
Confidence            3679999999999864 222 36999998 78999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccc-eeEEEEEEEecCCCcccccceeeeeccCCcccee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS-LLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIR  207 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~-~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~  207 (384)
                      ++|.+..++..+.++++||+++|.+++++++||++.+..+...|. ...|++||||++|+|+.   ...|+...||+...
T Consensus        79 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~---~~~~~~~~gr~~~E  155 (219)
T d1xcca_          79 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKA---TVLYPATTGRNAHE  155 (219)
T ss_dssp             HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEE---EEEECTTBCCCHHH
T ss_pred             hHHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEE---EEEeCCCcccCHHH
Confidence            999987755545557899999999999999999988765443444 34599999999999964   34567888888544


Q ss_pred             e
Q psy17178        208 H  208 (384)
Q Consensus       208 ~  208 (384)
                      .
T Consensus       156 i  156 (219)
T d1xcca_         156 I  156 (219)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=2e-27  Score=203.85  Aligned_cols=136  Identities=28%  Similarity=0.473  Sum_probs=124.5

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  321 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~  321 (384)
                      .+|+.+|+|+++++.|.+...++|+|++||++||+||++.|||.|..|++.|++.+++|++.|++|++||.|+.+.+++|
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f   81 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW   81 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHH
Confidence            47999999999987777778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        322 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      .+...+.   ..++||+++|++++++++||++....+...|++||||++|+|++++...
T Consensus        82 ~~~~~~~---~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~  137 (186)
T d1n8ja_          82 HSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTA  137 (186)
T ss_dssp             HHHCTTG---GGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             hcccccc---ccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecC
Confidence            9876332   2589999999999999999999887788899999999999999987653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.4e-28  Score=212.81  Aligned_cols=150  Identities=25%  Similarity=0.416  Sum_probs=127.6

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      |.+|++||+|++++.   +|+ ++|+|++| ||+||+|||++|||+|..|++.|++.+++|++.|+++++||+|+.+++.
T Consensus         1 L~VGd~APdF~l~~~---~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~   76 (220)
T d1prxa_           1 LLLGDVAPNFEANTT---VGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL   76 (220)
T ss_dssp             CCTTCBCCCCEEEET---TEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             CCCCCCCCCcEeecC---CCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchh
Confidence            469999999999876   775 99999988 7999999999999999999999999999999999999999999999999


Q ss_pred             hhccCcccc---CCCCccceeEEeeCcchhHHhhcCcccCCCCcccc-eeEEEEEEEecCCCcccccceeeeeccCCccc
Q psy17178        130 AWVNTPRKE---GGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGS-LLSTAIFVYALTSPVNGYAGGALYSRLGGRAW  205 (384)
Q Consensus       130 ~~~~~~~~~---~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~-~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~w  205 (384)
                      +|.+.+..+   ....+++||+++|.+++++++||++.+..+...|. ...|++||||++|+||.   ..+++...||+.
T Consensus        77 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~---~~~~~~~~gR~~  153 (220)
T d1prxa_          77 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKL---SILYPATTGRNF  153 (220)
T ss_dssp             HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEE---EEECCTTBCCCH
T ss_pred             hhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeE---EEEecCCcccch
Confidence            997754322   22346899999999999999999988775543333 35689999999999964   466788888875


Q ss_pred             ee
Q psy17178        206 IR  207 (384)
Q Consensus       206 k~  207 (384)
                      ..
T Consensus       154 dE  155 (220)
T d1prxa_         154 DE  155 (220)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=6e-27  Score=199.21  Aligned_cols=133  Identities=31%  Similarity=0.484  Sum_probs=118.8

Q ss_pred             CCCCCCCCCCceeeeEEcCcc---------------eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC
Q psy17178        240 IPFVSKPAPFWQGTAVVDGQL---------------KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  304 (384)
Q Consensus       240 ~~~~g~~~P~f~l~~l~d~~g---------------~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~  304 (384)
                      +..+|+.+|+|++++.   .|               +.++++|++||++||+||+++|||+|..+++.+++++++|++.|
T Consensus         2 ~l~vGd~aPdF~l~~~---~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g   78 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTAL---IGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD   78 (169)
T ss_dssp             BCCTTCBCCCCEEEEE---CSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT
T ss_pred             CCCCCCCCCCCEEeec---cCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC
Confidence            3579999999999976   44               78999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        305 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       305 v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++++||.|+++..++|.+.+....   .++||+++|++++++++||++.. .+...|++||||++|+|++.+..
T Consensus        79 ~~vv~is~d~~~~~~~~~~~~~~~~---~~~f~ll~D~~~~v~~~ygv~~~-~~~~~r~~fvID~~G~I~~~~~~  149 (169)
T d2bmxa1          79 AQILGVSIDSEFAHFQWRAQHNDLK---TLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSAT  149 (169)
T ss_dssp             EEEEEEESSCHHHHHHHHHHCTTGG---GCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEE
T ss_pred             cceeeccccchhhhhhhcccccccc---cceEEEEeccHHHHHHHcCCCcc-CCccceeEEEEcCCCEEEEEEEc
Confidence            9999999999999999988764332   58999999999999999999643 34678999999999999998764

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=2.3e-28  Score=206.19  Aligned_cols=134  Identities=25%  Similarity=0.379  Sum_probs=117.6

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      ++++|++||+|+|++.   +|+.++|+++  +||++||+|||++|||+|+.+++.++++++++++.++.+++||.|+++.
T Consensus         1 mi~vG~~aPdF~L~~~---~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~   77 (160)
T d2cx4a1           1 LVELGEKAPDFTLPNQ---DFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC   77 (160)
T ss_dssp             CCCTTSBCCCCEECCT---TSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHH
T ss_pred             CCcCCCCCcCeEeECC---CCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhh
Confidence            4689999999999876   9999999998  7999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +++|.+..       +++||+++|.+++++++||++....+ .......|++||||++|+|+....+
T Consensus        78 ~~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~-~~~~~~~~~~flId~~G~I~~~~~~  136 (160)
T d2cx4a1          78 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLK-GLKMVAKRAVFIVKPDGTVAYKWVT  136 (160)
T ss_dssp             HHHHHHHH-------TCSSEEEECTTSHHHHHTTCEEEEET-TEEEEECCEEEEECTTSBEEEEEEC
T ss_pred             hhhhcccc-------eeeEEEeecCCcchHHHcCccccccc-cccccceeeEEEEcCCCEEEEEEEe
Confidence            99998743       78999999999999999999765422 1223456789999999999865443

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=8.8e-28  Score=201.05  Aligned_cols=127  Identities=28%  Similarity=0.475  Sum_probs=113.2

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ++++|++||+|++++.   +|++++|++++| +++||.||+++|||+|+.|++.|+++++++++.|+++++||.|+++.+
T Consensus         1 ml~vG~~aPdF~l~d~---~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~   77 (153)
T d1xvwa1           1 MLNVGATAPDFTLRDQ---NQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTH   77 (153)
T ss_dssp             CCCTTSBCCCCEEECT---TSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHH
T ss_pred             CCCCcCCCcCeEEECC---CCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHH
Confidence            4789999999999766   999999999999 588888889999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeC--cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~--~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      ++|.+..       +++||+++|.  +++++++||++.+..|     ...|++||||++|+|++.
T Consensus        78 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~ygv~~~~~g-----~~~r~tfvID~~G~I~~~  130 (153)
T d1xvwa1          78 KIWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAG-----IANRGTFVVDRSGIIRFA  130 (153)
T ss_dssp             HHHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTT-----EECSEEEEECTTSBEEEE
T ss_pred             HHHhhhh-------ccceeEEecccccchhHHHhhhhhhccC-----ceeeeEEEECCCCEEEEE
Confidence            9999854       7899999886  5889999999776644     445789999999999854

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.94  E-value=2.2e-26  Score=195.50  Aligned_cols=136  Identities=39%  Similarity=0.685  Sum_probs=121.5

Q ss_pred             CCCCCCCCceeeeEEcCc---ceeeeccccCCC-eEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        242 FVSKPAPFWQGTAVVDGQ---LKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~---g~~~~l~d~~Gk-~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      .+|+.+|+|+++++ +.+   |+.++|+|++|| ++||+||+++|||.|..|++.+++.++++++.|++|++||.|+.+.
T Consensus         2 lVG~~APdF~l~~~-~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~   80 (170)
T d1zofa1           2 VVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV   80 (170)
T ss_dssp             CTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCcCCCcCcccc-cCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhh
Confidence            47999999999977 332   257999999996 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++|.+..+......+++|++++|+++++.++||++... +...|++||||++|+|++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~-~~~~r~tfvID~~G~I~~~~~~  141 (170)
T d1zofa1          81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIALRGAFLIDKNMKVRHAVIN  141 (170)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHhhhhhcccccCcccccccccccHHHHHcCCCccc-cceeEEEEEEcCCCeEEEEEEe
Confidence            999999887666666789999999999999999997653 5678999999999999987653

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=2.4e-27  Score=210.21  Aligned_cols=221  Identities=20%  Similarity=0.235  Sum_probs=151.2

Q ss_pred             cCCCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .+|++||+|++++.   +| +++++++   +||++||+|||++|||+|.+|++.|++.+++|+++|+++|+||+|+.+++
T Consensus         2 lIGd~aPdF~l~t~---~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh   77 (237)
T d2zcta1           2 LIGERFPEMEVTTD---HG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH   77 (237)
T ss_dssp             CTTSBCCCEEEEET---TE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEEcC---CC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHH
Confidence            48999999999876   77 5777776   79999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeeccCCccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRH  208 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~~g~~wk~~  208 (384)
                      ++|.+..++.. ..+++||+++|++++++++||++..+.    +....|++||||++|+|+.+   ..++...||+....
T Consensus        78 ~~w~~~~~~~~-~~~l~fpllsD~~~~vak~yGv~~~~~----~~~~~RatFIIDpdG~Ir~~---~~~~~~~gR~~dEi  149 (237)
T d2zcta1          78 IKWKEWIERHI-GVRIPFPIIADPQGTVARRLGLLHAES----ATHTVRGVFIVDARGVIRTM---LYYPMELGRLVDEI  149 (237)
T ss_dssp             HHHHHHHHHHH-CCCCCSCEEECGGGHHHHHTTCC--------CCTTCCEEEEECTTSBEEEE---EECCTTBCCCHHHH
T ss_pred             HHHhhhhhhhc-ccccccccccCcchHHHHHcCCccccc----cccceeeeEEECCCCEEEEE---EEeCCCCCCCHHHH
Confidence            99987653321 237899999999999999999976542    23456899999999999753   56678888875432


Q ss_pred             eeeechhhHHHHHHHHHHHHHHHHhhhccccCCCC----CCC--CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCC
Q psy17178        209 CLLSACLVPVLVCATALVVNFIAMYYHASRAIPFV----SKP--APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF  282 (384)
Q Consensus       209 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~--~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~  282 (384)
                       ++           ++=.+-.........++.-+.    |+.  +|.-    +   +.+...-.--+|.+-.+.+|+...
T Consensus       150 -Lr-----------~l~aLQ~~~~~~~~~Pa~W~~~~~~g~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~  210 (237)
T d2zcta1         150 -LR-----------IVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP----T---TEDQARARMESGQYRSLDWWFCWD  210 (237)
T ss_dssp             -HH-----------HHHHHHHHHHHTCBBCTTTTSBTTTBTCEECCCC----C---SHHHHHHHHHHTCSEEEETTEEEE
T ss_pred             -HH-----------HHHHHhhhccCCcCCcCCCCCCCCCCCCEEeCCC----C---CHHHHHHhccCCCeeeeeeeeeec
Confidence             20           000111111011111111122    331  1110    0   111111101147777778776655


Q ss_pred             CcCchHhHHHHHHHHHHHHhC
Q psy17178        283 TFVCPTEILAFNDRLEEFHQI  303 (384)
Q Consensus       283 c~~C~~~~~~l~~l~~~~~~~  303 (384)
                      .++-..+.|+..+..+.-.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~  231 (237)
T d2zcta1         211 TPASRDDVEEARRYLRRAAEK  231 (237)
T ss_dssp             CCSCHHHHHHHHHHHHHHHSC
T ss_pred             cCcccccchhhHHHHHhcccc
Confidence            667778899988888766554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.94  E-value=1.5e-26  Score=196.40  Aligned_cols=131  Identities=42%  Similarity=0.804  Sum_probs=115.7

Q ss_pred             CCCccEEEeee-cCccceEEccccCC-CeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhcc
Q psy17178         56 PAPFWQGTAVV-DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN  133 (384)
Q Consensus        56 ~aP~f~l~~~~-~~~g~~~~l~~~~g-k~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~  133 (384)
                      +||+|+|+++. |+++++++|+|++| |++||+|||++|||+|.+|++.|++.+++|++.|++||+||.|+.+.+++|.+
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~   80 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK   80 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence            48999999763 45678999999998 79999999999999999999999999999999999999999999999999998


Q ss_pred             CccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        134 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       134 ~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      ..+......+++||+++|.+++++++||+....      ....|++||||++|+|+...
T Consensus        81 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~------~~~~R~tfiId~~G~I~~~~  133 (170)
T d2h01a1          81 TPLSQGGIGNIKHTLISDISKSIARSYDVLFNE------SVALRAFVLIDKQGVVQHLL  133 (170)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT------TEECCEEEEECTTSBEEEEE
T ss_pred             hhhhhccccccCCceeEcCccHHHHHhCCcccc------ccceeeeEEEcCCCeEEEEE
Confidence            766555556789999999999999999996543      25568999999999998654

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.9e-26  Score=192.80  Aligned_cols=130  Identities=28%  Similarity=0.419  Sum_probs=118.2

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  319 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~  319 (384)
                      ..+|+++|+|+++   |.+|++++|+|++| |++|+.||+++|||.|+.|++.|+++++++++.|++|++||.|+++.++
T Consensus         2 l~vG~~aPdF~l~---d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~   78 (153)
T d1xvwa1           2 LNVGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK   78 (153)
T ss_dssp             CCTTSBCCCCEEE---CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred             CCCcCCCcCeEEE---CCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHH
Confidence            4689999999998   77999999999999 4778888789999999999999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCcceeEEecC--chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        320 AWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|.+.+       +++++++.|.  ++.++++||++....+...|++||||++|+|++.+...
T Consensus        79 ~~~~~~-------~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~  134 (153)
T d1xvwa1          79 IWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQ  134 (153)
T ss_dssp             HHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECC
T ss_pred             HHhhhh-------ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeC
Confidence            999987       8899999875  58899999998887778889999999999999987643

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-26  Score=196.13  Aligned_cols=128  Identities=24%  Similarity=0.282  Sum_probs=109.4

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      .+++|++||+|+|++.   +|++++|++++||++||+|||++|||+|..+++.|+++++++  .++++++||.|+++.++
T Consensus        17 ~~~vG~~APdF~L~~~---~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~--~~~~vv~Is~d~~~~~~   91 (164)
T d1qxha_          17 IPQAGSKAQTFTLVAK---DLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI--DNTVVLCISADLPFAQS   91 (164)
T ss_dssp             CCCTTSBCCCCEEECT---TSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHT
T ss_pred             cCCCCCCCCCeEEECC---CCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh--ccceeeeEEcCCHHHHH
Confidence            4689999999999766   999999999999999999999999999999999999988766  47999999999999999


Q ss_pred             hhccCccccCCCCccceeEEe--eCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLS--DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~--D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      +|.+..       +++++++.  |++++++++||+..... ...| ...|++||||++|+|++.
T Consensus        92 ~~~~~~-------~~~~~~~~~~d~~~~~~~~ygv~~~~~-~~~g-~~~ra~fvID~~G~I~y~  146 (164)
T d1qxha_          92 RFCGAE-------GLNNVITLSTFRNAEFLQAYGVAIADG-PLKG-LAARAVVVIDENDNVIFS  146 (164)
T ss_dssp             TCCSST-------TCTTEEEEECTTCHHHHHHTTCBBCSS-TTTT-SBCCEEEEECTTSBEEEE
T ss_pred             HHHHHh-------CCCcceeeccccchhhHHhcCeEeecC-cccC-cccCEEEEEcCCCEEEEE
Confidence            998753       67777775  55789999999976542 2334 346889999999999853

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=8e-27  Score=196.57  Aligned_cols=130  Identities=24%  Similarity=0.383  Sum_probs=118.2

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc--CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~--~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+|+++|+|+++   |.+|+.++|+|+  +||++||+||+++|||+|..+++.++++++++++.++.+++||.|+++.+
T Consensus         2 i~vG~~aPdF~L~---~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~   78 (160)
T d2cx4a1           2 VELGEKAPDFTLP---NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCL   78 (160)
T ss_dssp             CCTTSBCCCCEEC---CTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHH
T ss_pred             CcCCCCCcCeEeE---CCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhh
Confidence            4689999999998   669999999998  79999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC----CceeeEEEEEeCCceEEEEEecC
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----GHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~----~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      ++|.+..       ++++++++|.++.++++||++....    ..+.|++||||++|+|++++...
T Consensus        79 ~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~  137 (160)
T d2cx4a1          79 KKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD  137 (160)
T ss_dssp             HHHHHHH-------TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS
T ss_pred             hhhcccc-------eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeC
Confidence            9998876       8999999999999999999976532    14578999999999999988754

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.4e-25  Score=189.55  Aligned_cols=132  Identities=20%  Similarity=0.231  Sum_probs=113.6

Q ss_pred             cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+..+++|+.+|+|+|+   |.+|+.++|+|++||++||+||++.|||+|..+++.|++++.++  .++.+++||.|+++
T Consensus        14 ~g~~~~vG~~APdF~L~---~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~--~~~~vv~Is~d~~~   88 (164)
T d1qxha_          14 ANSIPQAGSKAQTFTLV---AKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI--DNTVVLCISADLPF   88 (164)
T ss_dssp             CSCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHH
T ss_pred             CCCcCCCCCCCCCeEEE---CCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh--ccceeeeEEcCCHH
Confidence            34457899999999998   77999999999999999999999999999999999999998766  47999999999999


Q ss_pred             hHHHHhcCccccCCCCCcceeEEe--cCchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEecC
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLS--DLTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      .+++|.+..       +++++++.  |+++.++++||+.....   |...|++||||++|+|+|.+...
T Consensus        89 ~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~  150 (164)
T d1qxha_          89 AQSRFCGAE-------GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVD  150 (164)
T ss_dssp             HHTTCCSST-------TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             HHHHHHHHh-------CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence            998888765       67777664  56799999999975542   45679999999999999987644

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=9.7e-26  Score=194.47  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=106.4

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  313 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-------  313 (384)
                      ..+|+.+|+|+++   |.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|++ ++.+++|+.+       
T Consensus         6 l~vG~~aPdF~l~---d~~G~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~   80 (187)
T d2cvba1           6 LPLESPLIDAELP---DPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPE   80 (187)
T ss_dssp             CCTTCBCCCCEEE---CTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGG
T ss_pred             CCCCCccCccEee---cCCCCEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccc
Confidence            3689999999999   5599999999999999999999 99999999999999999999976 5899999752       


Q ss_pred             -CHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        314 -SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                       +++.++++.++.       +++||++.|+++.++++||+      ..+|++||||++|+|+|+
T Consensus        81 ~~~e~~~~~~~~~-------~~~~p~l~D~~~~~~~~~~v------~~~P~~~liD~~G~i~y~  131 (187)
T d2cvba1          81 DAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRA------LRTPEVFLFDERRLLRYH  131 (187)
T ss_dssp             GSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTC------CEESEEEEECTTCBEEEE
T ss_pred             cchHHHHHHHHHh-------CCcceeeechhhhhcccccc------cceeeEEEEcCCCeEEEE
Confidence             346677777766       89999999999999999999      789999999999999984

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.1e-26  Score=189.42  Aligned_cols=130  Identities=19%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcccc--CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHh
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  127 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~--~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~  127 (384)
                      .+++|++||+|+|++.   +|+.++|+++  +|+++|++|||++|||+|..+++.|++.+++|++ ++.+++||.|+++.
T Consensus         4 ~L~vG~~aP~f~L~~~---~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~   79 (156)
T d2a4va1           4 ELEIGDPIPDLSLLNE---DNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTS   79 (156)
T ss_dssp             CCCTTCBCCSCEEECT---TSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHH
T ss_pred             cCCCCCCCCCeEEECC---CCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhh
Confidence            5789999999999877   9999999999  4568888889999999999999999999999975 56789999999999


Q ss_pred             HHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +++|.+..       +++||+++|++++++++||+...+.   .|..  +++ +|+.||+|+....+..
T Consensus        80 ~~~f~~~~-------~l~f~~L~D~~~~v~~~ygv~~~~~---~~~~--r~~-~i~~dg~i~~~~~~~~  135 (156)
T d2a4va1          80 QKKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPL---SGSI--RSH-FIFVDGKLKFKRVKIS  135 (156)
T ss_dssp             HHHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSS---SCBC--CEE-EEEETTEEEEEEESCC
T ss_pred             HHhhhccc-------CccceeccchHHHHHHHcCCCcccc---CCee--EEE-EEEECCeEEEEEEEeC
Confidence            99999854       8999999999999999999976552   2222  334 4557999986655443

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=1.9e-25  Score=188.61  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=108.6

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      .++++|++||+|+|++.   +|++++|++++||++||+|||++|||+|..|++.|++.+++++  |+.+++||.|+++.+
T Consensus        14 ~~p~vG~~APdF~L~d~---~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~~~~   88 (164)
T d1q98a_          14 HFPQVGEIVENFILVGN---DLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLPFAQ   88 (164)
T ss_dssp             CCCCTTCBCCCCEEECT---TSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCCcEEECC---CCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcHHHH
Confidence            35689999999999765   9999999999999999999999999999999999999999984  799999999999999


Q ss_pred             HhhccCccccCCCCccc-eeEEeeC-cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        129 LAWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      ++|.+..       ++. ++.++|. +..+++.||+.....+ ..| ...|++||||++|+|++.
T Consensus        89 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~g-~~~Ra~fvID~~G~I~y~  144 (164)
T d1q98a_          89 ARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGP-LAG-LTSRAVIVLDEQNNVLHS  144 (164)
T ss_dssp             TTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSST-TTT-SBCCEEEEECTTSBEEEE
T ss_pred             HHHHHHh-------CCccccccccccchhHHHhhceecccCc-ccc-CcccEEEEECCCCEEEEE
Confidence            9998753       554 4455553 5789999999765422 233 356899999999999854

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.1e-25  Score=194.02  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=107.6

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-----
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-----  124 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-----  124 (384)
                      .+.+|++||+|+|+++   +|+.++|++++||++||+|| ++|||+|+.++|.|++++++|++ ++.+++|+.++     
T Consensus         5 ~l~vG~~aPdF~l~d~---~G~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~   79 (187)
T d2cvba1           5 ELPLESPLIDAELPDP---RGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYP   79 (187)
T ss_dssp             CCCTTCBCCCCEEECT---TSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCG
T ss_pred             CCCCCCccCccEeecC---CCCEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeecccccccc
Confidence            4679999999999888   99999999999999999999 99999999999999999999976 58899887532     


Q ss_pred             ---HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeeecc
Q psy17178        125 ---HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRL  200 (384)
Q Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p~~  200 (384)
                         .+..++|.+.   +    +++||++.|.+++++++||+           ..+|.+||||++|+|+  +.|.++...
T Consensus        80 ~~~~e~~~~~~~~---~----~~~~p~l~D~~~~~~~~~~v-----------~~~P~~~liD~~G~i~--y~G~idd~~  138 (187)
T d2cvba1          80 EDAPEKMAAFAEE---H----GIFFPYLLDETQEVAKAYRA-----------LRTPEVFLFDERRLLR--YHGRVNDNP  138 (187)
T ss_dssp             GGSHHHHHHHHHH---H----TCCSCEEECSSSHHHHHTTC-----------CEESEEEEECTTCBEE--EEECSSSCT
T ss_pred             ccchHHHHHHHHH---h----CCcceeeechhhhhcccccc-----------cceeeEEEEcCCCeEE--EEeeecCCC
Confidence               3455566653   3    88999999999999999999           4467889999999997  357665543

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.92  E-value=2.2e-24  Score=182.93  Aligned_cols=133  Identities=41%  Similarity=0.795  Sum_probs=119.5

Q ss_pred             CCCCceeeeEE-cCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhc
Q psy17178        246 PAPFWQGTAVV-DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN  323 (384)
Q Consensus       246 ~~P~f~l~~l~-d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~  323 (384)
                      ++|+|+++++. |+++++++|+|++| |++||+||++.|||.|..|++.+++.+++|++.|+.||+||.|+.+.+++|.+
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~   80 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK   80 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence            48999999763 46778999999998 79999999999999999999999999999999999999999999999999998


Q ss_pred             CccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        324 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ..+......+++||+++|+++.++++||+.... +...|++||||++|+|++.+..
T Consensus        81 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~-~~~~R~tfiId~~G~I~~~~~~  135 (170)
T d2h01a1          81 TPLSQGGIGNIKHTLISDISKSIARSYDVLFNE-SVALRAFVLIDKQGVVQHLLVN  135 (170)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT-TEECCEEEEECTTSBEEEEEEG
T ss_pred             hhhhhccccccCCceeEcCccHHHHHhCCcccc-ccceeeeEEEcCCCeEEEEEEe
Confidence            876665555799999999999999999997643 4678999999999999998854

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.92  E-value=5.1e-25  Score=195.08  Aligned_cols=135  Identities=28%  Similarity=0.484  Sum_probs=115.2

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc---CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~---~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      |.+|+++|+|++.   +.+|+ ++++++   +||++||+||+++|||+|..|++.|++++++|+++|+++++||+|+.++
T Consensus         1 PlIGd~aPdF~l~---t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~s   76 (237)
T d2zcta1           1 PLIGERFPEMEVT---TDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFS   76 (237)
T ss_dssp             CCTTSBCCCEEEE---ETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCCCCCCeEEE---cCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHH
Confidence            4689999999998   45885 777775   7999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC-ceeeEEEEEeCCceEEEEEecC
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~-~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +++|.+..+...+ .+++||+++|++++++++||+...+.+ ...|++||||++|+|++++..+
T Consensus        77 h~~w~~~~~~~~~-~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~  139 (237)
T d2zcta1          77 HIKWKEWIERHIG-VRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYP  139 (237)
T ss_dssp             HHHHHHHHHHHHC-CCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECC
T ss_pred             HHHHhhhhhhhcc-cccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeC
Confidence            9999876543322 279999999999999999999765443 5789999999999999987653

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=8e-25  Score=185.26  Aligned_cols=127  Identities=26%  Similarity=0.369  Sum_probs=102.2

Q ss_pred             cccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  129 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~  129 (384)
                      .+++|++||+|+|++.   +|++++|++++||++||+|||++|||+|..|++.|++.   +++.|+++++||.|+++.++
T Consensus        16 ~p~iG~~aP~F~L~~~---~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~g~~vv~Is~d~~~~~~   89 (166)
T d1xvqa_          16 LPAVGSPAPAFTLTGG---DLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAASGATVLCVSKDLPFAQK   89 (166)
T ss_dssp             CCCTTSBCCCCEEECT---TSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHTTCEEEEEESSCHHHHT
T ss_pred             CCCCcCCCCCeEEECC---CCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccccccccccccchHHHHH
Confidence            4689999999999776   99999999999999999999999999999999988654   55679999999999999999


Q ss_pred             hhccCccccCCCCccceeEE-eeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLL-SDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l-~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      +|.+..       ++.++++ .|....+++.||+..... ...| ...|++||||++|+|++.
T Consensus        90 ~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~g-~~~ra~fvID~~G~I~y~  143 (166)
T d1xvqa_          90 RFCGAE-------GTENVMPASAFRDSFGEDYGVTIADG-PMAG-LLARAIVVIGADGNVAYT  143 (166)
T ss_dssp             TCC-------------CEEEEECTTSSHHHHTTCBBCSS-TTTT-SBCSEEEEECTTSBEEEE
T ss_pred             HHHHHh-------CCcccccccchhHHHHHHhCeeeccC-cccC-ceeeEEEEEeCCCEEEEE
Confidence            998743       5666655 566789999999976542 2223 345789999999999853

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.9e-24  Score=177.13  Aligned_cols=119  Identities=22%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             CCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHHHHh
Q psy17178        244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAWV  322 (384)
Q Consensus       244 g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~~~~  322 (384)
                      |+.+|+|+++   |.+|+++++++++||++||+|| ++|||+|..+++.++++++++.++++.+++|+.| +++.+++|+
T Consensus         2 G~~~P~f~l~---~~~G~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~   77 (137)
T d1st9a_           2 GSDAPNFVLE---DTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFM   77 (137)
T ss_dssp             CEECCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHH
T ss_pred             cCcCCCeEEE---CCCcCEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHHH
Confidence            7899999998   5599999999999999999999 9999999999999999999999999999999975 678889998


Q ss_pred             cCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        323 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +++       +++|+++.|.++++++.||+      ...|++||||++|+|++++..
T Consensus        78 ~~~-------~~~~~~~~d~~~~~~~~~~v------~~~P~~~liD~~G~i~~~~~G  121 (137)
T d1st9a_          78 KSY-------GVNFPVVLDTDRQVLDAYDV------SPLPTTFLINPEGKVVKVVTG  121 (137)
T ss_dssp             HHT-------TCCSCEEEETTSHHHHHTTC------CSSCEEEEECTTSEEEEEEES
T ss_pred             HHc-------CCCccccccccchhhhhhhc------cccceEEEECCCCEEEEEEEC
Confidence            876       88999999999999999999      578999999999999997753

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=189.22  Aligned_cols=135  Identities=24%  Similarity=0.330  Sum_probs=118.8

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCC-CeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~G-k~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      .+|+.+|+|+++   +.+|+ ++|+|++| |++||+||++.|||+|..|+..|++.+++|++.|+++++||+|+.+.+.+
T Consensus         2 ~VGd~APdF~l~---~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~   77 (220)
T d1prxa_           2 LLGDVAPNFEAN---TTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLA   77 (220)
T ss_dssp             CTTCBCCCCEEE---ETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCcEee---cCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhh
Confidence            589999999998   45886 99999987 79999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccc---cCCCCCcceeEEecCchHHHHHhCceecCCC------ceeeEEEEEeCCceEEEEEecC
Q psy17178        321 WVNTPRK---EGGLGKLKIPLLSDLTHKISLDYGVYLSDQG------HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       321 ~~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~------~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      |.+..+.   ..+..+++||+++|++++++++||++..+.+      ...|++||||++|+|++.+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~  146 (220)
T d1prxa_          78 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP  146 (220)
T ss_dssp             HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECC
T ss_pred             hhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEec
Confidence            9776532   2233479999999999999999999866542      4679999999999999988764

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=3.3e-24  Score=180.98  Aligned_cols=132  Identities=20%  Similarity=0.217  Sum_probs=112.8

Q ss_pred             cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+..+.+|+.+|+|+|+   |.+|+.++|+|++||++||+||++.|||.|..|++.|++.+++++  ++.|++||.|+++
T Consensus        12 ~g~~p~vG~~APdF~L~---d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~~   86 (164)
T d1q98a_          12 GGHFPQVGEIVENFILV---GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLPF   86 (164)
T ss_dssp             ESCCCCTTCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCHH
T ss_pred             CCCCCCCCCCCCCcEEE---CCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcHH
Confidence            44567899999999998   679999999999999999999999999999999999999999984  7899999999999


Q ss_pred             hHHHHhcCccccCCCCCcc-eeEEec-CchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEecC
Q psy17178        317 THLAWVNTPRKEGGLGKLK-IPLLSD-LTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~D-~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      .+++|.+..       ++. ++.+.| .+..+++.||+.....   |...|++||||++|+|+|.+...
T Consensus        87 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~  148 (164)
T d1q98a_          87 AQARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVE  148 (164)
T ss_dssp             HHTTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             HHHHHHHHh-------CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECC
Confidence            999988765       554 444444 3578999999976543   45679999999999999987644

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.91  E-value=6.6e-25  Score=192.09  Aligned_cols=136  Identities=21%  Similarity=0.301  Sum_probs=119.8

Q ss_pred             CCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  320 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~  320 (384)
                      ++|+.+|+|++++. +.+| .++++|+ +||++||+||++.|||.|..|+..+++.+++|++.|++|++||.|+.+++++
T Consensus         3 ~iGd~aPdF~l~~~-~~~g-~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~   80 (219)
T d1xcca_           3 HLGATFPNFTAKAS-GIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDK   80 (219)
T ss_dssp             CTTCBCCCCEECBT-TCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             cCCCCCCCcEeecc-CCCC-cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhH
Confidence            68999999999843 3334 6899997 7899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCCCCCcceeEEecCchHHHHHhCceecCC------CceeeEEEEEeCCceEEEEEec
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ------GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~------~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |.+..++.++..+++||+++|++++++++||+.....      +...+++||||++|+|++.+..
T Consensus        81 w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~  145 (219)
T d1xcca_          81 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLY  145 (219)
T ss_dssp             HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEE
T ss_pred             HhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEe
Confidence            9998766655557999999999999999999986542      1456899999999999987654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=1.3e-24  Score=177.48  Aligned_cols=116  Identities=13%  Similarity=0.105  Sum_probs=105.5

Q ss_pred             CCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHHHHh
Q psy17178        244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAWV  322 (384)
Q Consensus       244 g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~~~~  322 (384)
                      |+..|+|+++++   +|+++++++++||++||+|| ++|||+|..++|.|+++++++  +++.+++|+.+ +.+..++|+
T Consensus         1 ~d~~~~f~~~~~---~G~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~~~~~~~~~~~   74 (134)
T d1lu4a_           1 ADERLQFTATTL---SGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATRADVGAMQSFV   74 (134)
T ss_dssp             CGGGGCCEEEBT---TSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCHHHHHHHH
T ss_pred             CCCCCcceeECC---CCCEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccccchhhhhhhh
Confidence            678899999955   99999999999999999999 999999999999999999865  57999999985 677888898


Q ss_pred             cCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        323 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      +++       +++||++.|+++.++++||+      ...|++||||++|+|++++.
T Consensus        75 ~~~-------~~~~p~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~v~~  117 (134)
T d1lu4a_          75 SKY-------NLNFTNLNDADGVIWARYNV------PWQPAFVFYRADGTSTFVNN  117 (134)
T ss_dssp             HHH-------TCCSEEEECTTSHHHHHTTC------CSSSEEEEECTTSCEEEECC
T ss_pred             hhh-------ccccceeeCchHHHHHHcCC------CcCCEEEEEeCCCeEEEEec
Confidence            877       89999999999999999999      68999999999999998654

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.91  E-value=5.4e-25  Score=185.73  Aligned_cols=126  Identities=27%  Similarity=0.374  Sum_probs=106.1

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhH
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  128 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~  128 (384)
                      ..+++|++||+|+|++.   +|++++|++++||++||.|||++|||+|..+++.|++.++++  .++.+++||.|+++.+
T Consensus        14 ~~l~vG~~aPdF~L~~~---~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~--~~~~vv~Is~d~~~~~   88 (163)
T d1psqa_          14 KQLQVGDKALDFSLTTT---DLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQ   88 (163)
T ss_dssp             CCCCTTSBCCCCEEECT---TSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCCeEEECC---CCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh--cccceEEEEeccHHHH
Confidence            35689999999999776   999999999999999999999999999999999999988877  4789999999999999


Q ss_pred             HhhccCccccCCCCccce-eEEee-CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        129 LAWVNTPRKEGGLGKLKI-PLLSD-LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~-p~l~D-~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      ++|.+..       +..+ +++.| .+..+++.||+.....+     ...|++||||++|+|++.
T Consensus        89 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~ygv~~~~~~-----~~~Ra~fvID~~G~I~y~  141 (163)
T d1psqa_          89 KRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWH-----LLARAVFVLDTDNTIRYV  141 (163)
T ss_dssp             HHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTC-----SBCCEEEEECTTCBEEEE
T ss_pred             HHHHHHc-------CCcceeeeccccchhHHHhheeeccccc-----ceeEEEEEECCCCEEEEE
Confidence            9998753       3343 44444 46899999999766532     345789999999999854

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.6e-24  Score=178.07  Aligned_cols=127  Identities=18%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc--CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhH
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  318 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~--~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~  318 (384)
                      ..+|+++|+|+|+   |.+|+.++|+++  +|+++|++||+++|||.|..+++.|++.+++|++ ++.+++||.|+++.+
T Consensus         5 L~vG~~aP~f~L~---~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~   80 (156)
T d2a4va1           5 LEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ   80 (156)
T ss_dssp             CCTTCBCCSCEEE---CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHH
T ss_pred             CCCCCCCCCeEEE---CCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhH
Confidence            4689999999998   669999999998  5678888889999999999999999999999974 567999999999999


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++|.+++       +++||+++|++++++++||+...+.+ ..+++++|+.||+|++.+..
T Consensus        81 ~~f~~~~-------~l~f~~L~D~~~~v~~~ygv~~~~~~-~~~r~~~i~~dg~i~~~~~~  133 (156)
T d2a4va1          81 KKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLS-GSIRSHFIFVDGKLKFKRVK  133 (156)
T ss_dssp             HHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSS-CBCCEEEEEETTEEEEEEES
T ss_pred             Hhhhccc-------CccceeccchHHHHHHHcCCCccccC-CeeEEEEEEECCeEEEEEEE
Confidence            9999987       89999999999999999999765543 33445555579999998764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=1.1e-24  Score=178.48  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=110.0

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-CHHhHHhh
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAW  131 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-~~~~~~~~  131 (384)
                      .|+++|+|++.+.   +|+++++++++||++||+|| ++|||+|..+++.++++++++.+.++.+++|+.+ +++.+++|
T Consensus         1 ~G~~~P~f~l~~~---~G~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~   76 (137)
T d1st9a_           1 EGSDAPNFVLEDT---NGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNF   76 (137)
T ss_dssp             CCEECCCCEEECT---TSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHH
T ss_pred             CcCcCCCeEEECC---CcCEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHH
Confidence            4899999999877   99999999999999999999 9999999999999999999999999999999975 47788888


Q ss_pred             ccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        132 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       132 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                      .++.       +++||++.|.++++++.||+.        +   .|.+||+|++|+|++...|...
T Consensus        77 ~~~~-------~~~~~~~~d~~~~~~~~~~v~--------~---~P~~~liD~~G~i~~~~~G~~~  124 (137)
T d1st9a_          77 MKSY-------GVNFPVVLDTDRQVLDAYDVS--------P---LPTTFLINPEGKVVKVVTGTMT  124 (137)
T ss_dssp             HHHT-------TCCSCEEEETTSHHHHHTTCC--------S---SCEEEEECTTSEEEEEEESCCC
T ss_pred             HHHc-------CCCccccccccchhhhhhhcc--------c---cceEEEECCCCEEEEEEECCCC
Confidence            8743       789999999999999999982        2   3578999999999988877663

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=8e-24  Score=179.01  Aligned_cols=130  Identities=23%  Similarity=0.310  Sum_probs=105.4

Q ss_pred             cccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHH
Q psy17178        237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  316 (384)
Q Consensus       237 ~~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~  316 (384)
                      .+..|++|+++|+|+|+   |.+|++++|+|++||++||+||++.|||.|..|++.|++.   +++.|++|++||.|+++
T Consensus        13 ~g~~p~iG~~aP~F~L~---~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~g~~vv~Is~d~~~   86 (166)
T d1xvqa_          13 VGELPAVGSPAPAFTLT---GGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAASGATVLCVSKDLPF   86 (166)
T ss_dssp             SSCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHTTCEEEEEESSCHH
T ss_pred             CCCCCCCcCCCCCeEEE---CCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccccccccccccchHH
Confidence            34567899999999998   6699999999999999999999999999999999887654   56678999999999999


Q ss_pred             hHHHHhcCccccCCCCCcceeEE-ecCchHHHHHhCceecCC---CceeeEEEEEeCCceEEEEEec
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLL-SDLTHKISLDYGVYLSDQ---GHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~gv~~~~~---~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++++|.+..       +..++.+ .|....+.+.||+.....   +...|++||||++|+|+|.+..
T Consensus        87 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~  146 (166)
T d1xvqa_          87 AQKRFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELV  146 (166)
T ss_dssp             HHTTCC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHHh-------CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEc
Confidence            888887765       5666654 466688999999975433   3567899999999999997754

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.90  E-value=6.7e-24  Score=178.95  Aligned_cols=131  Identities=24%  Similarity=0.250  Sum_probs=112.1

Q ss_pred             ccCCCCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHh
Q psy17178        238 RAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  317 (384)
Q Consensus       238 ~~~~~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~  317 (384)
                      +..+.+|+.+|+|+|+   |.+|++++|+|++||++||+||++.|||.|..+++.+++.++++  +++.+++||.|+++.
T Consensus        13 g~~l~vG~~aPdF~L~---~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~--~~~~vv~Is~d~~~~   87 (163)
T d1psqa_          13 GKQLQVGDKALDFSLT---TTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFA   87 (163)
T ss_dssp             SCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHH
T ss_pred             CCCCCCCCCCCCeEEE---CCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh--cccceEEEEeccHHH
Confidence            4556899999999998   66999999999999999999999999999999999999888877  478999999999999


Q ss_pred             HHHHhcCccccCCCCCcce-eEEec-CchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        318 HLAWVNTPRKEGGLGKLKI-PLLSD-LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~-~~~~D-~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +++|.+..       +..+ +.+.| .++.+++.||+.....+...|++||||++|+|+|.+...
T Consensus        88 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~  145 (163)
T d1psqa_          88 QKRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVD  145 (163)
T ss_dssp             HHHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECS
T ss_pred             HHHHHHHc-------CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcC
Confidence            99998876       3343 33433 568999999998777666778899999999999987543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=2.9e-24  Score=175.30  Aligned_cols=114  Identities=15%  Similarity=0.141  Sum_probs=100.7

Q ss_pred             CCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC-CHHhHHhhc
Q psy17178         54 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAWV  132 (384)
Q Consensus        54 G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d-~~~~~~~~~  132 (384)
                      ||.+|+|+++++   +|+++++++++||++||+|| ++|||+|+.++|.|+++++++  .++.+++|+.+ +.+..++|.
T Consensus         1 ~d~~~~f~~~~~---~G~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~~~~~~~~~~~   74 (134)
T d1lu4a_           1 ADERLQFTATTL---SGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATRADVGAMQSFV   74 (134)
T ss_dssp             CGGGGCCEEEBT---TSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCHHHHHHHH
T ss_pred             CCCCCcceeECC---CCCEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccccchhhhhhhh
Confidence            688999999888   99999999999999999999 999999999999999999875  58999999986 577777888


Q ss_pred             cCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       133 ~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      +.+       +++||++.|.++.++++||+.           ..|+++|||++|+|+.+
T Consensus        75 ~~~-------~~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~v  115 (134)
T d1lu4a_          75 SKY-------NLNFTNLNDADGVIWARYNVP-----------WQPAFVFYRADGTSTFV  115 (134)
T ss_dssp             HHH-------TCCSEEEECTTSHHHHHTTCC-----------SSSEEEEECTTSCEEEE
T ss_pred             hhh-------ccccceeeCchHHHHHHcCCC-----------cCCEEEEEeCCCeEEEE
Confidence            743       889999999999999999982           23578999999999753

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.88  E-value=8.3e-23  Score=174.46  Aligned_cols=128  Identities=20%  Similarity=0.227  Sum_probs=108.4

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--CHHhHHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTHLA  320 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--~~~~~~~  320 (384)
                      .+..+|+|+++   |.+|+.++|++++||++||+|| ++||+.|..+++.++++++++.++++.|++||.|  +++..++
T Consensus        32 ~~~~~Pdf~l~---d~~G~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~  107 (176)
T d1jfua_          32 APLKLPDLAFE---DADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKT  107 (176)
T ss_dssp             SCCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHH
T ss_pred             CCCcCCCeEEE---CCCcCEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhhhh
Confidence            56789999999   5599999999999999999999 9999999999999999999999999999999976  5678888


Q ss_pred             HhcCccccCCCCCcce-eEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178        321 WVNTPRKEGGLGKLKI-PLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW  384 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~  384 (384)
                      |+++.       ++++ +++.|.++.+.+.|+.+..-  ...|++||||++|+|++++. |..||
T Consensus       108 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~v--~~~P~~~lID~~G~I~~~~~-G~~~~  162 (176)
T d1jfua_         108 FLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIA-GPAEW  162 (176)
T ss_dssp             HHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEE-SCCCT
T ss_pred             hHhhh-------CCcceeeeecchhHHHHHHhhhccC--CCCCeEEEEcCCCEEEEEEE-CCCCC
Confidence            88876       5554 47888888888887654322  35799999999999999765 55454

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=6.4e-23  Score=169.13  Aligned_cols=122  Identities=11%  Similarity=0.088  Sum_probs=106.5

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC------CH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------SH  315 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d------~~  315 (384)
                      .+|+++|+|++.+- ..+|+.++++++.||+++|+|| ++|||+|..++|.|+++++++++ ++.+++|+.+      +.
T Consensus         2 k~g~~aP~~~~~~~-~~ng~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~   78 (143)
T d2b5xa1           2 KLRQPMPELTGEKA-WLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDP   78 (143)
T ss_dssp             CTTCBCCCCCCCSE-EESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSH
T ss_pred             CCCCcCCCCcCCcc-CcCCeEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccch
Confidence            47999999997642 2378999999999999999999 99999999999999999999975 6899999874      24


Q ss_pred             HhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        316 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +.+++|.+++       +++||++.|.++.+++.|++      ..+|++||||++|+|++.+..
T Consensus        79 ~~~~~~~~~~-------~~~~p~~~D~~~~~~~~~~v------~~~P~~~~id~~G~i~~~~~G  129 (143)
T d2b5xa1          79 GKIKETAAEH-------DITQPIFVDSDHALTDAFEN------EYVPAYYVFDKTGQLRHFQAG  129 (143)
T ss_dssp             HHHHHHHHHT-------TCCSCEEECSSCHHHHHTCC------CCSSEEEEECTTCBEEEEEES
T ss_pred             hhhhhHHHhh-------ccCccccccCccchHHHcCC------CcCCEEEEECCCCEEEEEEEC
Confidence            4567777766       89999999999999999999      689999999999999997764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=3.1e-22  Score=163.06  Aligned_cols=112  Identities=13%  Similarity=0.140  Sum_probs=97.3

Q ss_pred             CCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-CCHHhHHHHhcCc
Q psy17178        247 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWVNTP  325 (384)
Q Consensus       247 ~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-d~~~~~~~~~~~~  325 (384)
                      .++|+++++   +|+++++++++||++||+|| ++|||+|+.++|.|++++++++  ++.+++|+. |+.+..++|++++
T Consensus         5 ~~df~~~~~---~G~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~   78 (134)
T d1zzoa1           5 QLQFSAKTL---DGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKY   78 (134)
T ss_dssp             GGCCEEEBT---TSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHT
T ss_pred             CcceeEEcC---CCCEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhc
Confidence            456999855   99999999999999999999 9999999999999999999874  567788876 5677778888765


Q ss_pred             cccCCCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEE
Q psy17178        326 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYW  376 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~  376 (384)
                      +      ...++++.|.++.+++.||+      ...|++||||++|+|+++
T Consensus        79 ~------~~~~~~l~D~~~~~~~~~~v------~~~P~~~iiD~~G~i~~~  117 (134)
T d1zzoa1          79 P------VKTFTQLADTDGSVWANFGV------TQQPAYAFVDPHGNVDVV  117 (134)
T ss_dssp             T------CTTSEEEECTTCHHHHHTTC------CSSSEEEEECTTCCEEEE
T ss_pred             C------CcceeEEeeccchHHHhcCC------CccCeEEEECCCCeEEEE
Confidence            1      34689999999999999999      689999999999999874

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=6e-23  Score=169.31  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=104.6

Q ss_pred             ccCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC------
Q psy17178         51 KNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------  124 (384)
Q Consensus        51 ~~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~------  124 (384)
                      +++|++||+|++.+. -.+|+.++++++.||+++|+|| ++|||+|..++|.|+++++++++ ++.+++|+.+.      
T Consensus         1 ~k~g~~aP~~~~~~~-~~ng~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~   77 (143)
T d2b5xa1           1 MKLRQPMPELTGEKA-WLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLD   77 (143)
T ss_dssp             CCTTCBCCCCCCCSE-EESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSS
T ss_pred             CCCCCcCCCCcCCcc-CcCCeEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccc
Confidence            468999999996541 1168889999999999999999 99999999999999999999975 68999998753      


Q ss_pred             HHhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .+..++|.+.   +    +++||++.|.++++++.|++           ..+|++|+||++|+|+....|..
T Consensus        78 ~~~~~~~~~~---~----~~~~p~~~D~~~~~~~~~~v-----------~~~P~~~~id~~G~i~~~~~G~~  131 (143)
T d2b5xa1          78 PGKIKETAAE---H----DITQPIFVDSDHALTDAFEN-----------EYVPAYYVFDKTGQLRHFQAGGS  131 (143)
T ss_dssp             HHHHHHHHHH---T----TCCSCEEECSSCHHHHHTCC-----------CCSSEEEEECTTCBEEEEEESCS
T ss_pred             hhhhhhHHHh---h----ccCccccccCccchHHHcCC-----------CcCCEEEEECCCCEEEEEEECCC
Confidence            3445666663   3    88999999999999999998           23457899999999998888754

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-22  Score=168.22  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=109.2

Q ss_pred             cccCCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHHHhCCcE-EEEEeCCCHH
Q psy17178         50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINTE-VVAASVDSHF  126 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~v~-vi~Vs~d~~~  126 (384)
                      ++++|+.+|+|++.+.  ++|++++|+++ +||++||+|||++|||+|.. +++.+.+.+++++++|++ ++++|+|+..
T Consensus         2 pikVGd~aP~f~l~~~--~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~   79 (161)
T d1hd2a_           2 PIKVGDAIPAVEVFEG--EPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF   79 (161)
T ss_dssp             CCCTTCBCCCCEEECS--STTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred             CCCCCCcCCCeEEEec--CCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchh
Confidence            4689999999999642  35789999997 89999999999999999965 788999999999999874 6689999999


Q ss_pred             hHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCC-cccceeEEEEEEEecCCCcccc
Q psy17178        127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP-VRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~-~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      .+++|.+.. +.    ..++|+++|++++++++||++.+..+. ..+..+++.+++|+++|+|+..
T Consensus        80 ~~~~~~~~~-~~----~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~  140 (161)
T d1hd2a_          80 VTGEWGRAH-KA----EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL  140 (161)
T ss_dssp             HHHHHHHHT-TC----TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred             hhhhhhhhc-cc----ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence            999998753 11    457999999999999999998776543 2222334555666779999754

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.85  E-value=5.2e-22  Score=169.45  Aligned_cols=127  Identities=19%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC--CHHhHH
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTHL  129 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d--~~~~~~  129 (384)
                      ..+.++|+|++++.   +|+.++|++++||++||+|| ++|||.|..+++.++++++++.+.++.+++|+.|  +++..+
T Consensus        31 ~~~~~~Pdf~l~d~---~G~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~  106 (176)
T d1jfua_          31 SAPLKLPDLAFEDA---DGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPK  106 (176)
T ss_dssp             CSCCBCCCCEEECT---TSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHH
T ss_pred             CCCCcCCCeEEECC---CcCEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhhh
Confidence            45678999999887   99999999999999999999 9999999999999999999999999999999986  466778


Q ss_pred             hhccCccccCCCCccce-eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        130 AWVNTPRKEGGLGKLKI-PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|.+..       ++++ +++.|..+.+.+.|+.++..    .+   .|++||||++|+|+..+.|..
T Consensus       107 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~v----~~---~P~~~lID~~G~I~~~~~G~~  160 (176)
T d1jfua_         107 TFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA----LG---MPTSVLVDPQGCEIATIAGPA  160 (176)
T ss_dssp             HHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC----SS---SSEEEEECTTSBEEEEEESCC
T ss_pred             hhHhhh-------CCcceeeeecchhHHHHHHhhhccC----CC---CCeEEEEcCCCEEEEEEECCC
Confidence            887743       5554 58889999999998875433    22   356899999999998887765

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.85  E-value=1.4e-21  Score=161.08  Aligned_cols=117  Identities=18%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-hCCcEEEEEeCCC-HHhHHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHLA  320 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-~~~v~vv~Is~d~-~~~~~~  320 (384)
                      +|..+|+++..   +.+|..++|++++||+++|+|| ++||++|+.++|.|+++++++. +.++.+++|+.|. .+..++
T Consensus         4 ~~k~~P~~~~~---~~~~~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~   79 (144)
T d1o73a_           4 LAKYLPGATNL---LSKSGEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHD   79 (144)
T ss_dssp             GGGTSCTTCCB---BCTTSCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHH
T ss_pred             cccCCCCceee---ccCCCEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHH
Confidence            57889999987   4578889999999999999999 9999999999999999999995 4689999999984 456666


Q ss_pred             HhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCCCceeeEEEEEeCC-ceEEEEE
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGHTLDKYCLECYK-MVIVYWF  377 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~~~  377 (384)
                      +.++.       . .+.+..|..   ..+.+.||+      ..+|++||||++ |+|+...
T Consensus        80 ~~~~~-------~-~~~~~~~~~~~~~~l~~~y~v------~~~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          80 YYGKM-------P-WLALPFDQRSTVSELGKTFGV------ESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHTTC-------S-SEECCTTCHHHHHHHHHHHTC------CSSSEEEEEETTTCCEEESC
T ss_pred             HHHhc-------c-ccceeeeccchHHHHHHHcCC------CcCCEEEEEECCCCEEEeec
Confidence            66653       2 122223333   468899999      689999999997 9998743

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.85  E-value=6e-22  Score=163.11  Aligned_cols=110  Identities=9%  Similarity=0.105  Sum_probs=94.6

Q ss_pred             cCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC------HHhHHHHhcCccccCC
Q psy17178        257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------HFTHLAWVNTPRKEGG  330 (384)
Q Consensus       257 d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~------~~~~~~~~~~~~~~~~  330 (384)
                      +.+|+++++++++||++||+|| ++|||+|+.++|.|++++++++..++.+++|+.+.      .....++....     
T Consensus        10 ~~~~~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~-----   83 (143)
T d2fy6a1          10 TADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL-----   83 (143)
T ss_dssp             ETTSCBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTS-----
T ss_pred             CCCCCEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhc-----
Confidence            5599999999999999999999 99999999999999999999999999999998642      12333333332     


Q ss_pred             CCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        331 LGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       331 ~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                       ....||++.|+++.+++.||+      ..+|+++|||++|+|++++..
T Consensus        84 -~~~~~~~~~D~~~~~~~~~~v------~~~P~~~liD~~G~i~~~~~G  125 (143)
T d2fy6a1          84 -NYPKLPVVTDNGGTIAQSLNI------SVYPSWALIGKDGDVQRIVKG  125 (143)
T ss_dssp             -CCTTSCEEECTTCHHHHHTTC------CSSSEEEEECTTSCEEEEEES
T ss_pred             -CCcccccccccchHHHHHcCC------CccCEEEEECCCCEEEEEEEC
Confidence             157899999999999999999      689999999999999997653

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.85  E-value=2.7e-21  Score=162.59  Aligned_cols=137  Identities=20%  Similarity=0.257  Sum_probs=112.4

Q ss_pred             cccCCCCCCccEEEeee-cCccceEEcccc-CCCeEEEEEeeCCCCCCchHH-HHHHHHhHHHHHhCCc-EEEEEeCCCH
Q psy17178         50 SKNLSKPAPFWQGTAVV-DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSH  125 (384)
Q Consensus        50 ~~~~G~~aP~f~l~~~~-~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~v-~vi~Vs~d~~  125 (384)
                      .+++|+++|+|+|..+. ++++++++|+++ +||++||+|||++|+|+|..| ++.+.+..++++++|. ++++||+|++
T Consensus         3 ~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~   82 (162)
T d1tp9a1           3 PIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP   82 (162)
T ss_dssp             CCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCH
T ss_pred             CCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccch
Confidence            57899999999997542 445788999996 999999999999999999765 6677777888888775 7899999999


Q ss_pred             HhHHhhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccc
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYA  192 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~  192 (384)
                      ..+++|.+... .    ..++++++|++++++++||+.....+...|....|++|||| ||+|+...
T Consensus        83 ~~~~~~~~~~~-~----~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~  143 (162)
T d1tp9a1          83 FVMKAWAKSYP-E----NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN  143 (162)
T ss_dssp             HHHHHHHHTCT-T----CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred             hhhhhhhhhcc-c----ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence            99999998641 1    35699999999999999999766544334555678999999 99998653

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.84  E-value=2.4e-21  Score=159.61  Aligned_cols=113  Identities=14%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCC-HHhHHHHhcCc
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHLAWVNTP  325 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~-~~~~~~~~~~~  325 (384)
                      .+|+...+ +.+|..+++++++||+++|+|| |+||++|+.++|.|+++++++++ .++.|++|+.|. .+...++.+..
T Consensus         7 ~p~~~~~l-~~~~~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~   84 (144)
T d1i5ga_           7 FPYSTNVL-KGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM   84 (144)
T ss_dssp             CSSCSEEE-ETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC
T ss_pred             CCCchhhc-cCCCCEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhC
Confidence            34555545 7889999999999999999999 99999999999999999999986 479999999984 45666676654


Q ss_pred             cccCCCCCcceeEEecCc--hHHHHHhCceecCCCceeeEEEEEeCC-ceEEE
Q psy17178        326 RKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLDKYCLECYK-MVIVY  375 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~  375 (384)
                             ++.++.+.|.+  ..+.+.||+      ..+|+++|||++ |+|+.
T Consensus        85 -------~~~~~~~~d~~~~~~l~~~y~v------~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          85 -------PWLALPFEDRKGMEFLTTGFDV------KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             -------SSEECCTTCHHHHHHHHHHTTC------CSSSEEEEEETTTCCEEE
T ss_pred             -------CCCceeeEChHHHHHHHHHCCC------CCcCEEEEEeCCCCEEEe
Confidence                   55555555544  457899999      789999999996 89975

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=1.5e-21  Score=158.98  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=95.1

Q ss_pred             CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC-CCHHhHHhhccCcc
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWVNTPR  136 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~-d~~~~~~~~~~~~~  136 (384)
                      ++|+++++   +|+++++++++||++||+|| ++|||+|+.++|.|++++++++  ++.+++|+. |+.+..++|.+.. 
T Consensus         6 ~df~~~~~---~G~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~-   78 (134)
T d1zzoa1           6 LQFSAKTL---DGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKY-   78 (134)
T ss_dssp             GCCEEEBT---TSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHT-
T ss_pred             cceeEEcC---CCCEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhc-
Confidence            56999888   99999999999999999999 9999999999999999999875  466777776 4677777787743 


Q ss_pred             ccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        137 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       137 ~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                            +. .||++.|.++++++.||+        .+   .|.+|+||++|+|+. +.|..
T Consensus        79 ------~~~~~~~l~D~~~~~~~~~~v--------~~---~P~~~iiD~~G~i~~-~~g~~  121 (134)
T d1zzoa1          79 ------PVKTFTQLADTDGSVWANFGV--------TQ---QPAYAFVDPHGNVDV-VRGRM  121 (134)
T ss_dssp             ------TCTTSEEEECTTCHHHHHTTC--------CS---SSEEEEECTTCCEEE-EESCC
T ss_pred             ------CCcceeEEeeccchHHHhcCC--------Cc---cCeEEEECCCCeEEE-EECCC
Confidence                  33 599999999999999998        23   346789999999975 34543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.83  E-value=1.4e-22  Score=166.89  Aligned_cols=119  Identities=9%  Similarity=0.116  Sum_probs=98.1

Q ss_pred             ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCH------HhHHhhc
Q psy17178         59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH------FTHLAWV  132 (384)
Q Consensus        59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~------~~~~~~~  132 (384)
                      ..+|++.   +|++++|++++||++||+|| ++|||+|+.++|.|++++++++..++.+++|+.+..      ....+|.
T Consensus         5 ~~~l~~~---~~~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~   80 (143)
T d2fy6a1           5 LSTLKTA---DNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWY   80 (143)
T ss_dssp             HHTCEET---TSCBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHH
T ss_pred             cceeECC---CCCEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhh
Confidence            3456555   99999999999999999999 999999999999999999999999999999997641      1222333


Q ss_pred             cCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeeee
Q psy17178        133 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYS  198 (384)
Q Consensus       133 ~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~p  198 (384)
                      ..   .   +...||++.|.++++++.||+        .   ..|++++||++|+|+....|.+.+
T Consensus        81 ~~---~---~~~~~~~~~D~~~~~~~~~~v--------~---~~P~~~liD~~G~i~~~~~G~~~~  129 (143)
T d2fy6a1          81 AG---L---NYPKLPVVTDNGGTIAQSLNI--------S---VYPSWALIGKDGDVQRIVKGSINE  129 (143)
T ss_dssp             TT---S---CCTTSCEEECTTCHHHHHTTC--------C---SSSEEEEECTTSCEEEEEESCCCH
T ss_pred             hh---c---CCcccccccccchHHHHHcCC--------C---ccCEEEEECCCCEEEEEEECCCCH
Confidence            32   1   256899999999999999998        2   245789999999999988888743

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.83  E-value=3.5e-21  Score=158.70  Aligned_cols=116  Identities=14%  Similarity=0.154  Sum_probs=93.4

Q ss_pred             CCCCceeeeE-----EcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC-CHHhHH
Q psy17178        246 PAPFWQGTAV-----VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHL  319 (384)
Q Consensus       246 ~~P~f~l~~l-----~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-~~~~~~  319 (384)
                      ++|+|+++++     .+.++..+++++++||++||+|| ++||++|+.++|.+++++++   .++.+++|+.+ +....+
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~i~~~~~~~~~~   77 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDAADNAR   77 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCCHHHHH
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEEEEeeechHHHH
Confidence            4566666543     12244779999999999999999 99999999999999988754   46889999875 455667


Q ss_pred             HHhcCccccCCCCCccee-EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEe
Q psy17178        320 AWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFE  378 (384)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~  378 (384)
                      ++.+++       +..++ ++.|+++++++.||+      ..+|+++|||++|+|++.+.
T Consensus        78 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~liD~~G~i~~~~~  124 (144)
T d1knga_          78 RFLGRY-------GNPFGRVGVDANGRASIEWGV------YGVPETFVVGREGTIVYKLV  124 (144)
T ss_dssp             HHHHHH-------CCCCSEEEEETTSHHHHHTTC------CSSCEEEEECTTSBEEEEEE
T ss_pred             HHHHHc-------CCccccccccccchhhhhcCc------cccceEEEEcCCCeEEEEEe
Confidence            777765       44544 788999999999999      68999999999999999765

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=5.8e-21  Score=162.21  Aligned_cols=135  Identities=11%  Similarity=0.112  Sum_probs=103.8

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCC-CchHHHHHHHHhHHHHHhC--CcEEEEEeCCC----H
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQI--NTEVVAASVDS----H  125 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp-~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d~----~  125 (384)
                      ++.++|+|++.+.   +|++++|++++||++||+|| .+||| +|+.+++.|.++++++++.  ++.+++||+|+    +
T Consensus         7 ~~~~~p~F~l~d~---~G~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp   82 (172)
T d1xzoa1           7 LNYEVEPFTFQNQ---DGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP   82 (172)
T ss_dssp             CCEECCCCEEECT---TSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred             CCCcCCCeEEEcC---CCCEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccchH
Confidence            6778999999766   99999999999999999999 66775 8999999999999999764  58899999865    6


Q ss_pred             HhHHhhccCccccCCCCccceeEEeeCcch-----hHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        126 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-----ISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~-----~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      +.+++|.+.+    +.....|.++.+...+     ..+.|+++...........+++.+||||++|+|++...|.
T Consensus        83 ~~l~~y~~~~----~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~  153 (172)
T d1xzoa1          83 KQLKKFAANY----PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGV  153 (172)
T ss_dssp             HHHHHHHTTS----CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESS
T ss_pred             HHHHHHHHHh----ccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCC
Confidence            7788888754    2224467788886644     3455666544322134455677899999999998766554

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=9.1e-21  Score=154.64  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=91.2

Q ss_pred             eeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC-HHhHHHHhcCccccC
Q psy17178        252 GTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEG  329 (384)
Q Consensus       252 l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~  329 (384)
                      |+++ |.+|+.++.+++ +||++||+|| |+||++|+.|+|.|+++++    +++.+++++.+. ......+..+..   
T Consensus         2 l~~l-d~~g~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~~----~~~~vi~i~~~~~~~~~~~~~~~~~---   72 (136)
T d1z5ye1           2 LESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLSA----QGIRVVGMNYKDDRQKAISWLKELG---   72 (136)
T ss_dssp             EEBS-SSTTCEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHHH----TTCCEEEEEESCCHHHHHHHHHHHC---
T ss_pred             Cccc-cCCCcEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhhh----hhhhhcccccccchhhhHHHHHHcC---
Confidence            4556 888999999998 8999999999 9999999999999988753    678999999864 455555555431   


Q ss_pred             CCCCcceeEEecCchHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        330 GLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       330 ~~~~~~~~~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                         ...++++.|+++.+++.||+      ..+|++||||++|+|++++..
T Consensus        73 ---~~~~~~~~d~~~~~~~~~~v------~~~P~~~liD~~G~i~~~~~G  113 (136)
T d1z5ye1          73 ---NPYALSLFDGDGMLGLDLGV------YGAPETFLIDGNGIIRYRHAG  113 (136)
T ss_dssp             ---CCCSEEEEESSCHHHHHHTC------CSBSEEEEECTTSCEEEEEES
T ss_pred             ---CccceeecccchhHHHhccc------CCcceEEEEcCCCEEEEEEEc
Confidence               34556788999999999999      689999999999999997763

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=5.8e-20  Score=155.95  Aligned_cols=130  Identities=11%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             CCCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCc-CchHhHHHHHHHHHHHHh--CCcEEEEEeCC----C
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQ--INTEVVAASVD----S  314 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~-~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d----~  314 (384)
                      .++.++|+|+++   |++|+.+++++++||++||+|| .+||| .|+.+++.|.++++++++  .++.+++||+|    +
T Consensus         6 p~~~~~p~F~l~---d~~G~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dt   81 (172)
T d1xzoa1           6 PLNYEVEPFTFQ---NQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDK   81 (172)
T ss_dssp             CCCEECCCCEEE---CTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred             CCCCcCCCeEEE---cCCCCEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccch
Confidence            367789999998   7799999999999999999999 66665 899999999999999976  45899999975    5


Q ss_pred             HHhHHHHhcCccccCCCCCcceeEEecCchH-----HHHHhCceecCC-C----ceeeEEEEEeCCceEEEEEec
Q psy17178        315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-----ISLDYGVYLSDQ-G----HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~gv~~~~~-~----~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ++.+++|.+.+...    ...|.++.+.+..     ..+.|+++.... +    .|.+.+||||++|+|+..|..
T Consensus        82 p~~l~~y~~~~~~~----~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g  152 (172)
T d1xzoa1          82 PKQLKKFAANYPLS----FDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNG  152 (172)
T ss_dssp             HHHHHHHHTTSCCC----GGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEES
T ss_pred             HHHHHHHHHHhccc----cccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcC
Confidence            67788888776322    4567788876543     345566654322 1    467889999999999997763

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.81  E-value=6.9e-21  Score=156.96  Aligned_cols=117  Identities=20%  Similarity=0.242  Sum_probs=91.3

Q ss_pred             cCCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH-hCCcEEEEEeCCC-HHhHH
Q psy17178         52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHL  129 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~v~vi~Vs~d~-~~~~~  129 (384)
                      .+|+.+|+|+....   +|++++|++++||+++|+|| ++||++|+.++|.|+++++++. +.++++++|+.|. .+..+
T Consensus         3 ~~~k~~P~~~~~~~---~~~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~   78 (144)
T d1o73a_           3 GLAKYLPGATNLLS---KSGEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFH   78 (144)
T ss_dssp             GGGGTSCTTCCBBC---TTSCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred             CcccCCCCceeecc---CCCEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHH
Confidence            37889999998544   78889999999999999999 9999999999999999999995 5689999999986 45556


Q ss_pred             hhccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNGY  191 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~~  191 (384)
                      ++.+..      +...+|  .|..   .++++.||+        +|   .|++||||++ |+|...
T Consensus        79 ~~~~~~------~~~~~~--~~~~~~~~~l~~~y~v--------~~---~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_          79 DYYGKM------PWLALP--FDQRSTVSELGKTFGV--------ES---IPTLITINADTGAIIGT  125 (144)
T ss_dssp             HHHTTC------SSEECC--TTCHHHHHHHHHHHTC--------CS---SSEEEEEETTTCCEEES
T ss_pred             HHHHhc------ccccee--eeccchHHHHHHHcCC--------Cc---CCEEEEEECCCCEEEee
Confidence            666532      112233  3332   468899998        33   3578899998 888643

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.81  E-value=2.5e-20  Score=153.45  Aligned_cols=118  Identities=17%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             CCCCCCCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCC-HHhHHH
Q psy17178        243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHLA  320 (384)
Q Consensus       243 ~g~~~P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~-~~~~~~  320 (384)
                      +|..+|+|++.+.   +|+++++++++||+++|+|| ++||++|..++|.|.++++++++ .++.+++|+.|. .+....
T Consensus         2 ~~k~~P~~~~~~~---~g~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~   77 (144)
T d1o8xa_           2 LDKYLPGIEKLRR---GDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG   77 (144)
T ss_dssp             GGGTSTTCCEEEE---TTEEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred             CCCCCCCcEeEcC---CCCEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence            4678999999844   99999999999999999999 99999999999999999999965 479999999985 444455


Q ss_pred             HhcCccccCCCCCcceeEEe-cCchHHHHHhCceecCCCceeeEEEEEeCC-ceEEEE
Q psy17178        321 WVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLDKYCLECYK-MVIVYW  376 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~~~~~~p~~~lId~~-G~i~~~  376 (384)
                      +.....      ...+++.. |..+++++.|++      ..+|++||||++ |+|+..
T Consensus        78 ~~~~~~------~~~~~~~~~d~~~~l~~~y~v------~~~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_          78 YFAKMP------WLAVPFAQSEAVQKLSKHFNV------ESIPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             HHTTCS------SEECCGGGHHHHHHHHHHTTC------CSSSEEEEEETTTCCEEES
T ss_pred             HHhhcc------ccceeeecccchhhHHHHcCC------CcCCEEEEEeCCCCEEEEE
Confidence            544321      33444432 455789999999      689999999998 899863

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.80  E-value=8.7e-21  Score=156.33  Aligned_cols=120  Identities=14%  Similarity=0.184  Sum_probs=94.2

Q ss_pred             CCCCccEEEeee-----cCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhH
Q psy17178         55 KPAPFWQGTAVV-----DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  128 (384)
Q Consensus        55 ~~aP~f~l~~~~-----~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~  128 (384)
                      .+||+|+++.+.     +.++..+++++++||++||+|| ++|||+|+.++|.+++++++   .++++++|+.+. ....
T Consensus         1 ~paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~i~~~~~~~~~   76 (144)
T d1knga_           1 RPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDAADNA   76 (144)
T ss_dssp             CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCCHHHH
T ss_pred             CCCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEEEEeeechHHH
Confidence            367888877651     1133678999999999999999 99999999999999887654   478899998765 5556


Q ss_pred             HhhccCccccCCCCcccee-EEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        129 LAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ++|.+..       +..++ ++.|+++++++.||+        .+   .|++++||++|+|++...|.+
T Consensus        77 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v--------~~---~P~~~liD~~G~i~~~~~G~~  127 (144)
T d1knga_          77 RRFLGRY-------GNPFGRVGVDANGRASIEWGV--------YG---VPETFVVGREGTIVYKLVGPI  127 (144)
T ss_dssp             HHHHHHH-------CCCCSEEEEETTSHHHHHTTC--------CS---SCEEEEECTTSBEEEEEESCC
T ss_pred             HHHHHHc-------CCccccccccccchhhhhcCc--------cc---cceEEEEcCCCeEEEEEeCCC
Confidence            6666643       45554 788999999999998        23   356889999999998777765

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-19  Score=148.44  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=110.6

Q ss_pred             CCCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHHHhCCc-EEEEEeCCCHHh
Q psy17178        241 PFVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVDSHFT  317 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~~~~~v-~vv~Is~d~~~~  317 (384)
                      .++|+.+|+|++.+  +++|+.++++++ +||++||+|+|+.|||.|.. +++.+.+.++++.+.|. .++++|+|++..
T Consensus         3 ikVGd~aP~f~l~~--~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~   80 (161)
T d1hd2a_           3 IKVGDAIPAVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFV   80 (161)
T ss_dssp             CCTTCBCCCCEEEC--SSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHH
T ss_pred             CCCCCcCCCeEEEe--cCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhh
Confidence            47999999999863  356899999996 89999999999999999965 78889999999999887 567899999999


Q ss_pred             HHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCCC------ceeeEEEEEeCCceEEEEEecC
Q psy17178        318 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG------HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~~------~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +++|.+..+ .    ..++++++|++++++++||+.....+      ...+++++|++||+|++++...
T Consensus        81 ~~~~~~~~~-~----~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~  144 (161)
T d1hd2a_          81 TGEWGRAHK-A----EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP  144 (161)
T ss_dssp             HHHHHHHTT-C----TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECT
T ss_pred             hhhhhhhcc-c----ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeC
Confidence            999987652 1    46799999999999999999765543      2345667777799999988753

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.78  E-value=9.3e-20  Score=149.97  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             CCCCCCccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC-HHhHHh
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHLA  130 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~-~~~~~~  130 (384)
                      +|+.+|+|++.+.   +|++++|++++||+++|+|| ++|||+|..++|.|.++++++.. .++.+++|+.|. .+....
T Consensus         2 ~~k~~P~~~~~~~---~g~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~   77 (144)
T d1o8xa_           2 LDKYLPGIEKLRR---GDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG   77 (144)
T ss_dssp             GGGTSTTCCEEEE---TTEEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred             CCCCCCCcEeEcC---CCCEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence            5688999999777   99999999999999999999 99999999999999999999965 479999999986 444444


Q ss_pred             hccCccccCCCCccceeEE-eeCcchhHHhhcCcccCCCCcccceeEEEEEEEecC-CCccc
Q psy17178        131 WVNTPRKEGGLGKLKIPLL-SDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVNG  190 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l-~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~~  190 (384)
                      +....      +...+++. .|..+++++.|++        ++   .|+++|||++ |+|..
T Consensus        78 ~~~~~------~~~~~~~~~~d~~~~l~~~y~v--------~~---~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_          78 YFAKM------PWLAVPFAQSEAVQKLSKHFNV--------ES---IPTLIGVDADSGDVVT  122 (144)
T ss_dssp             HHTTC------SSEECCGGGHHHHHHHHHHTTC--------CS---SSEEEEEETTTCCEEE
T ss_pred             HHhhc------cccceeeecccchhhHHHHcCC--------Cc---CCEEEEEeCCCCEEEE
Confidence            44421      13444443 3455789999999        33   3578899998 78864

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.78  E-value=1.1e-19  Score=149.62  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             ecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCC-HHhHHhhccCccccCCCCc
Q psy17178         66 VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHLAWVNTPRKEGGLGK  143 (384)
Q Consensus        66 ~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~  143 (384)
                      ++++|..++|++++||+++|+|| ++||++|+.++|.|+++++++++ .++++++|+.|. .+..+++.+.   .    +
T Consensus        14 l~~~~~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~---~----~   85 (144)
T d1i5ga_          14 LKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAK---M----P   85 (144)
T ss_dssp             EETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTT---C----S
T ss_pred             ccCCCCEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHh---C----C
Confidence            45688999999999999999999 99999999999999999999986 479999999986 4555566553   2    4


Q ss_pred             cceeEEeeCc--chhHHhhcCcccCCCCcccceeEEEEEEEecC-CCcc
Q psy17178        144 LKIPLLSDLT--HKISLDYGVYLSDQGPVRGSLLSTAIFVYALT-SPVN  189 (384)
Q Consensus       144 ~~~p~l~D~~--~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~-G~v~  189 (384)
                      +.++.+.|..  ..+++.||+        .|   .|+++|||++ |+|.
T Consensus        86 ~~~~~~~d~~~~~~l~~~y~v--------~~---iPt~~lid~~~G~vi  123 (144)
T d1i5ga_          86 WLALPFEDRKGMEFLTTGFDV--------KS---IPTLVGVEADSGNII  123 (144)
T ss_dssp             SEECCTTCHHHHHHHHHHTTC--------CS---SSEEEEEETTTCCEE
T ss_pred             CCceeeEChHHHHHHHHHCCC--------CC---cCEEEEEeCCCCEEE
Confidence            5555555554  357889998        23   3578899997 8884

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.3e-19  Score=147.56  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=90.0

Q ss_pred             EEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccC
Q psy17178         62 GTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEG  139 (384)
Q Consensus        62 l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~  139 (384)
                      |+++ |++|+.++++++ +||++||+|| ++|||+|+.++|.|++++    +.++.+++++.+. ......+.+..    
T Consensus         2 l~~l-d~~g~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~----   71 (136)
T d1z5ye1           2 LESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKEL----   71 (136)
T ss_dssp             EEBS-SSTTCEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHH----
T ss_pred             Cccc-cCCCcEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHc----
Confidence            3443 567999999998 8999999999 999999999999998764    4689999999865 45555555432    


Q ss_pred             CCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceeee
Q psy17178        140 GLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALY  197 (384)
Q Consensus       140 ~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~~  197 (384)
                        +...++++.|.++.+++.||+        .|   .|++||||++|+|+....|.+.
T Consensus        72 --~~~~~~~~~d~~~~~~~~~~v--------~~---~P~~~liD~~G~i~~~~~G~~~  116 (136)
T d1z5ye1          72 --GNPYALSLFDGDGMLGLDLGV--------YG---APETFLIDGNGIIRYRHAGDLN  116 (136)
T ss_dssp             --CCCCSEEEEESSCHHHHHHTC--------CS---BSEEEEECTTSCEEEEEESCCC
T ss_pred             --CCccceeecccchhHHHhccc--------CC---cceEEEEcCCCEEEEEEEcCCC
Confidence              133456889999999999998        22   4578999999999998888763

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.77  E-value=6.3e-19  Score=147.93  Aligned_cols=134  Identities=16%  Similarity=0.204  Sum_probs=105.6

Q ss_pred             CCCCCCccEEEeeecCccceEEcccc-CCCeEEEEEeeCCCCCCchHHHHHHHHhHH-HHHhCCc-EEEEEeCCCHHhHH
Q psy17178         53 LSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-EFHQINT-EVVAASVDSHFTHL  129 (384)
Q Consensus        53 ~G~~aP~f~l~~~~~~~g~~~~l~~~-~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~-~~~~~~v-~vi~Vs~d~~~~~~  129 (384)
                      .|+++|+|+++...+++.+.++|+|+ +||+|||+|+|++|+|+|..|+..+.+.+. .++.+++ .+++++.+++..++
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~~   82 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMN   82 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHH
T ss_pred             CCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHHH
Confidence            79999999999874444468999997 999999999999999999999887665543 4444554 56777788877777


Q ss_pred             hhccCccccCCCCccceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      +|.+..      +...+++++|+.+.++++||+.....+...|....|++|||| +|+|+.+..
T Consensus        83 a~~~~~------~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v  139 (163)
T d1nm3a2          83 AWKEDE------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFI  139 (163)
T ss_dssp             HHHHHT------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred             HHhhhh------ccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEE
Confidence            776642      156799999999999999999766544334556678999999 999986543

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.75  E-value=1.1e-17  Score=140.09  Aligned_cols=134  Identities=22%  Similarity=0.269  Sum_probs=109.7

Q ss_pred             CCCCCCCCCceeeeEE-cCcceeeecccc-CCCeEEEEEEeCCCCcCchHh-HHHHHHHHHHHHhCC-cEEEEEeCCCHH
Q psy17178        241 PFVSKPAPFWQGTAVV-DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQIN-TEVVAASVDSHF  316 (384)
Q Consensus       241 ~~~g~~~P~f~l~~l~-d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~-~~~l~~l~~~~~~~~-v~vv~Is~d~~~  316 (384)
                      ..+|+.+|+|+|..+. +.++++++++++ +||++||+|+|+.++|.|..| .+...+..+.+.+.+ .++++||+|++.
T Consensus         4 l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~~   83 (162)
T d1tp9a1           4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPF   83 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHH
T ss_pred             CCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccchh
Confidence            5799999999997551 345678999985 999999999999999999764 566667777777766 479999999999


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C---ceeeEEEEEeCCceEEEEEecC
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G---HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~---~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      .+++|.+..+ .    ..++++++|+.+.++++||+.....  +   ...+.+|||| ||+|++++...
T Consensus        84 ~~~~~~~~~~-~----~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~  146 (162)
T d1tp9a1          84 VMKAWAKSYP-E----NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             HHHHHHHTCT-T----CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             hhhhhhhhcc-c----ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEEC
Confidence            9999998762 1    4569999999999999999865432  2   2468899999 89999988754

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=7e-16  Score=129.06  Aligned_cols=133  Identities=19%  Similarity=0.285  Sum_probs=104.5

Q ss_pred             CCCCCCCCceeeeEEcCcceeeecccc-CCCeEEEEEEeCCCCcCchHhHHHHHHHHHH-HHhCCc-EEEEEeCCCHHhH
Q psy17178        242 FVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINT-EVVAASVDSHFTH  318 (384)
Q Consensus       242 ~~g~~~P~f~l~~l~d~~g~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~-~~~~~v-~vv~Is~d~~~~~  318 (384)
                      ..|+.+|+|+++...+.+.+.++++|+ +||++||+|+|+.++|.|..|+..+...+.+ +...++ .++.++++++..+
T Consensus         2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~   81 (163)
T d1nm3a2           2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM   81 (163)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHH
Confidence            369999999999774444468999996 9999999999999999999998877766543 334443 5677777777777


Q ss_pred             HHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C---ceeeEEEEEeCCceEEEEEecCC
Q psy17178        319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G---HTLDKYCLECYKMVIVYWFERGN  381 (384)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~---~~~p~~~lId~~G~i~~~~~~~~  381 (384)
                      .+|.+...      ...+++++|+.+.++++||+.....  |   ...+.+|||| ||+|++++...+
T Consensus        82 ~a~~~~~~------~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~  142 (163)
T d1nm3a2          82 NAWKEDEK------SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPN  142 (163)
T ss_dssp             HHHHHHTT------CTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCS
T ss_pred             HHHhhhhc------cCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecC
Confidence            77765431      5789999999999999999865432  2   4567899999 999999987643

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.1e-16  Score=127.71  Aligned_cols=121  Identities=19%  Similarity=0.216  Sum_probs=92.2

Q ss_pred             CceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC----cEEEEEeCC----CHHhHHH
Q psy17178        249 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN----TEVVAASVD----SHFTHLA  320 (384)
Q Consensus       249 ~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~----v~vv~Is~d----~~~~~~~  320 (384)
                      +|+|+   |++|++++++||+||++||+||++.|+..|+.+++.+.++++++.+.+    +.++.++.+    .++...+
T Consensus         2 dF~L~---d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1wp0a1           2 PFSLT---THTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   78 (160)
T ss_dssp             CCEEE---ETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CeEEE---cCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHH
Confidence            68887   779999999999999999999944444589999999999999987643    456677764    4455666


Q ss_pred             HhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCCC---------ceeeEEEEEeCCceEEEEEec
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG---------HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~~---------~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +....       +.++..+.+..   ..+.+.|+++..+..         .|.+++||||++|+|+.+|..
T Consensus        79 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~  142 (160)
T d1wp0a1          79 YVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ  142 (160)
T ss_dssp             HHHTT-------CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEET
T ss_pred             HHhhc-------CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECC
Confidence            66554       67777777655   456788887543321         467889999999999998853

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.64  E-value=2.9e-16  Score=131.37  Aligned_cols=132  Identities=14%  Similarity=0.196  Sum_probs=104.6

Q ss_pred             cCCCCCCccEEEeee-------cCcc-----ceEEcccc-CCCeEEEEEeeCCCCCCchH-HHHHHHHhHHHH-HhCCc-
Q psy17178         52 NLSKPAPFWQGTAVV-------DGQL-----KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEF-HQINT-  115 (384)
Q Consensus        52 ~~G~~aP~f~l~~~~-------~~~g-----~~~~l~~~-~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~-~~~~v-  115 (384)
                      ++|+..|+.++...+       +.+|     ++++++++ +||++||+++|++++|.|.. ++|.+.+.+++| +++|+ 
T Consensus         1 k~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd   80 (179)
T d1xiya1           1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   80 (179)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc
Confidence            368889998764211       1122     57888988 89999999999999999976 699999999999 57888 


Q ss_pred             EEEEEeCCCHHhHHhhccCccccCCCCcc-ceeEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccc
Q psy17178        116 EVVAASVDSHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGY  191 (384)
Q Consensus       116 ~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~  191 (384)
                      +|++||+|++..+++|.+..       +. .+.+++|++++++++||+..+..+..-|....|+++||| ||+|..+
T Consensus        81 ~I~~iSvnD~fv~~aW~~~~-------~~~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~  149 (179)
T d1xiya1          81 DIYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM  149 (179)
T ss_dssp             EEEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred             eEEEEecCCHHHHHHHHhhc-------CcceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEE
Confidence            69999999999999998853       33 468999999999999999765433224455668999999 8998754

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=129.48  Aligned_cols=130  Identities=12%  Similarity=0.013  Sum_probs=91.9

Q ss_pred             CCCCceeeeEEcCc-ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC--------CHH
Q psy17178        246 PAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF  316 (384)
Q Consensus       246 ~~P~f~l~~l~d~~-g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d--------~~~  316 (384)
                      .+.+|+++++   + |++++|++|+||++||++| |+||+.|+.+.+.|++++++|+++|+.|+++..+        +.+
T Consensus         2 siydf~~~~l---~~g~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~   77 (184)
T d2f8aa1           2 SVYAFSARPL---AGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNE   77 (184)
T ss_dssp             CGGGCEECBT---TCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHH
T ss_pred             ceeeeEEEEC---CCCCEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchh
Confidence            3568888854   5 7789999999999999999 9999999999999999999999999999999864        345


Q ss_pred             hHHHHhcCccccCCCCCcceeEEecCc------hHHHHHh----CceecCC-C-ceee-----------------EEEEE
Q psy17178        317 THLAWVNTPRKEGGLGKLKIPLLSDLT------HKISLDY----GVYLSDQ-G-HTLD-----------------KYCLE  367 (384)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~D~~------~~~~~~~----gv~~~~~-~-~~~p-----------------~~~lI  367 (384)
                      +++++++..... ...+.+||+...-+      +.+.+-+    +....+. + ...|                 +.|||
T Consensus        78 ei~~f~~~~~~~-~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLI  156 (184)
T d2f8aa1          78 EILNSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV  156 (184)
T ss_dssp             HHHHHHHHTSSC-TTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred             hhhhhhheeccc-cccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEE
Confidence            677776542111 11267888865322      3443322    1110000 0 0111                 56999


Q ss_pred             eCCceEEEEEecC
Q psy17178        368 CYKMVIVYWFERG  380 (384)
Q Consensus       368 d~~G~i~~~~~~~  380 (384)
                      |++|+|+.+|..+
T Consensus       157 dr~G~vv~rf~~~  169 (184)
T d2f8aa1         157 GPDGVPLRRYSRR  169 (184)
T ss_dssp             CTTSCEEEEECTT
T ss_pred             CCCCCEEEEECCC
Confidence            9999999988643

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.6e-15  Score=123.07  Aligned_cols=124  Identities=19%  Similarity=0.239  Sum_probs=90.6

Q ss_pred             ccEEEeeecCccceEEccccCCCeEEEEEeeCCCCC-CchHHHHHHHHhHHHHHhCC----cEEEEEeCCC----HHhHH
Q psy17178         59 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQIN----TEVVAASVDS----HFTHL  129 (384)
Q Consensus        59 ~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp-~C~~~~~~l~~~~~~~~~~~----v~vi~Vs~d~----~~~~~  129 (384)
                      ||+|.+.   +|++++|++|+||++||+|| .+||| .|..+++.+.++++++.+.+    +.++.++.++    ++...
T Consensus         2 dF~L~d~---~G~~vsl~d~~GK~vll~F~-~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1wp0a1           2 PFSLTTH---TGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA   77 (160)
T ss_dssp             CCEEEET---TSCEEEGGGGTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHH
T ss_pred             CeEEEcC---CCCEEcHHHhCCCEEEEEEE-CCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHH
Confidence            5998665   99999999999999999999 66665 79999999999999887643    4566677654    44444


Q ss_pred             hhccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCCC----cccceeEEEEEEEecCCCcccccc
Q psy17178        130 AWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGP----VRGSLLSTAIFVYALTSPVNGYAG  193 (384)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~----~~g~~~~~~~~vid~~G~v~~~~~  193 (384)
                      ++....       +.++..+.+..   ..+.+.|++...+...    .+..-+++.+|||||+|+|+++..
T Consensus        78 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~  141 (160)
T d1wp0a1          78 NYVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG  141 (160)
T ss_dssp             HHHHTT-------CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEE
T ss_pred             HHHhhc-------CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEEC
Confidence            554432       56777777654   4577888876554322    223345678999999999986543

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=3.4e-15  Score=124.43  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=84.9

Q ss_pred             CCceeeeEEcCcceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh---CCcEEEEEeCCC----HHhHHH
Q psy17178        248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDS----HFTHLA  320 (384)
Q Consensus       248 P~f~l~~l~d~~g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~----~~~~~~  320 (384)
                      ++|+|+   |++|+++++++++||++||+||++.||+.|..+...+..+++.+.+   ..+.++.++.++    .+....
T Consensus         7 ~dF~l~---d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d2b7ka1           7 GPFHLE---DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKE   83 (169)
T ss_dssp             CCCEEE---ETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHH
T ss_pred             CCeEEE---eCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhh
Confidence            589998   7799999999999999999999777777888888888877777654   346677776643    344444


Q ss_pred             HhcCccccCCCCCcceeEEecCc---hHHHHHhCceecCC-------C---ceeeEEEEEeCCceEEEEEec
Q psy17178        321 WVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQ-------G---HTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~~~~~-------~---~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +....       +..+.......   ....+.|+.+....       +   .+.|++||||++|+|+.+|..
T Consensus        84 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~  148 (169)
T d2b7ka1          84 YLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGR  148 (169)
T ss_dssp             HHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECT
T ss_pred             hhccc-------cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECC
Confidence            44443       44455554433   45556666643221       1   367899999999999998764

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-15  Score=126.49  Aligned_cols=90  Identities=11%  Similarity=0.039  Sum_probs=71.4

Q ss_pred             CCccEEEeeecCc-cceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC--------HHh
Q psy17178         57 APFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------HFT  127 (384)
Q Consensus        57 aP~f~l~~~~~~~-g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~--------~~~  127 (384)
                      +-||++.++   + |++++|++|+||+++|++| |+||++|+.+++.|++++++|+++|++|+++..+.        .+.
T Consensus         3 iydf~~~~l---~~g~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~e   78 (184)
T d2f8aa1           3 VYAFSARPL---AGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEE   78 (184)
T ss_dssp             GGGCEECBT---TCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHH
T ss_pred             eeeeEEEEC---CCCCEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhh
Confidence            468999876   6 6789999999999999999 99999999999999999999999999999998764        345


Q ss_pred             HHhhccCccccCCCCccceeEEee
Q psy17178        128 HLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      ..+|.+..... ...+.+||+...
T Consensus        79 i~~f~~~~~~~-~~~~~~f~~~~k  101 (184)
T d2f8aa1          79 ILNSLKYVRPG-GGFEPNFMLFEK  101 (184)
T ss_dssp             HHHHHHHTSSC-TTCCCSSEEBCC
T ss_pred             hhhhhheeccc-ccccccccccee
Confidence            55665421100 111678888763

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=3.2e-15  Score=124.61  Aligned_cols=129  Identities=14%  Similarity=0.126  Sum_probs=83.1

Q ss_pred             CccEEEeeecCccceEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh---CCcEEEEEeCCCH----HhHHh
Q psy17178         58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSH----FTHLA  130 (384)
Q Consensus        58 P~f~l~~~~~~~g~~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~v~vi~Vs~d~~----~~~~~  130 (384)
                      +||+|.+.   +|+++++++++||++||+||++.||+.|......+..+++.+..   ..+.++.++.++.    +....
T Consensus         7 ~dF~l~d~---~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d2b7ka1           7 GPFHLEDM---YGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKE   83 (169)
T ss_dssp             CCCEEEET---TSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHH
T ss_pred             CCeEEEeC---CCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhh
Confidence            68999776   99999999999999999999666667777777777776666653   3566777776553    33333


Q ss_pred             hccCccccCCCCccceeEEeeCc---chhHHhhcCcccCCCC-----cccceeEEEEEEEecCCCcccccceee
Q psy17178        131 WVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGP-----VRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g~-----~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +.+..       ...+.......   ....+.|+++......     ...+.+++.+||||++|+|+.+..+..
T Consensus        84 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~  150 (169)
T d2b7ka1          84 YLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY  150 (169)
T ss_dssp             HHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC
T ss_pred             hhccc-------cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCC
Confidence            33322       33444444333   4566677776543211     233445678999999999987654443

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.47  E-value=2.3e-13  Score=113.49  Aligned_cols=131  Identities=15%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             CCCCCCCceeeeEE-------cCcc-----eeeecccc-CCCeEEEEEEeCCCCcCchH-hHHHHHHHHHHH-HhCCc-E
Q psy17178        243 VSKPAPFWQGTAVV-------DGQL-----KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEF-HQINT-E  306 (384)
Q Consensus       243 ~g~~~P~f~l~~l~-------d~~g-----~~~~l~d~-~Gk~vvl~F~~a~~c~~C~~-~~~~l~~l~~~~-~~~~v-~  306 (384)
                      +|+.+|+.++....       +.+|     +.++++++ +||.+||++.|+.++|.|.. ++|.+.+.++++ ++.|+ +
T Consensus         2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~   81 (179)
T d1xiya1           2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD   81 (179)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred             CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCce
Confidence            57888887764211       2233     46788886 99999999999999999976 699999999999 56787 7


Q ss_pred             EEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCceecCC--C---ceeeEEEEEeCCceEEEEEecC
Q psy17178        307 VVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G---HTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       307 vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~~--~---~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      |+.||+|++..+++|.+...      .-...+++|++++++++||+.....  |   ...+..+||| ||+|.+.+...
T Consensus        82 I~~iSvnD~fv~~aW~~~~~------~~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~  153 (179)
T d1xiya1          82 IYCITNNDIYVLKSWFKSMD------IKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEK  153 (179)
T ss_dssp             EEEEESSCHHHHHHHHHHTT------CCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred             EEEEecCCHHHHHHHHhhcC------cceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEeC
Confidence            99999999999999988751      2245899999999999999975432  2   2456789999 89999988764

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1e-10  Score=91.65  Aligned_cols=81  Identities=12%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             ccccCCCeEEEEEEeCC-------CCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCccee
Q psy17178        265 LSDYYGKYLVFFFYPLD-------FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  337 (384)
Q Consensus       265 l~d~~Gk~vvl~F~~a~-------~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~  337 (384)
                      +.+.+||+++|+|| |+       ||++|+...|.++++.++++ .++.++.|++|+..   ++.               
T Consensus        16 l~~~~gk~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~-~~~~~~~vdv~~~~---~~~---------------   75 (119)
T d1woua_          16 VEQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHIS-EGCVFIYCQVGEKP---YWK---------------   75 (119)
T ss_dssp             HHTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCC-TTEEEEEEECCCHH---HHH---------------
T ss_pred             HHHcCCCEEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcC-CceEEEEEECCCCc---ccc---------------
Confidence            44568999999999 64       99999999999999998775 35899999988532   222               


Q ss_pred             EEecCchHHHHHhCceecCCCceeeEEEEEeCCceEE
Q psy17178        338 LLSDLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       338 ~~~D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                         |.+..+.++|+|      ..+|++++++..+++.
T Consensus        76 ---d~~~~l~~~~~V------~~iPT~i~~~~g~~l~  103 (119)
T d1woua_          76 ---DPNNDFRKNLKV------TAVPTLLKYGTPQKLV  103 (119)
T ss_dssp             ---CTTCHHHHHHCC------CSSSEEEETTSSCEEE
T ss_pred             ---hhhhhHHHhCCe------EEEEEEEEEECCeEEe
Confidence               345678889999      7899999998666665

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=1e-09  Score=84.77  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=61.8

Q ss_pred             eccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCc
Q psy17178        264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  343 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~  343 (384)
                      .+.+..||++||+|| ++||++|....|.++++.+++++ .+.++.|..|.                            .
T Consensus        19 ~l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~----------------------------~   68 (111)
T d1xwaa_          19 QLTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDE----------------------------C   68 (111)
T ss_dssp             HHHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------C
T ss_pred             HHHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEeec----------------------------C
Confidence            455567999999999 99999999999999999998864 25566665542                            2


Q ss_pred             hHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        344 HKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       344 ~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ..+.++|++      ...|+.+++ ++|+++..+..
T Consensus        69 ~~l~~~~~V------~~~Pt~~~~-~~G~~v~~~~G   97 (111)
T d1xwaa_          69 EDIAMEYNI------SSMPTFVFL-KNGVKVEEFAG   97 (111)
T ss_dssp             HHHHHHTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             cchhhcCCC------ccccEEEEE-ECCEEEEEEeC
Confidence            345678888      678877666 69999987764

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=5.2e-10  Score=87.15  Aligned_cols=83  Identities=13%  Similarity=0.004  Sum_probs=58.4

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh-CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (384)
                      ...+++.+||+++|+|| ++||++|+...|.+....+..+. .++.++.+..+...                        
T Consensus        14 ~~~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------------   68 (117)
T d2fwha1          14 NQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND------------------------   68 (117)
T ss_dssp             HHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC------------------------
T ss_pred             HHHHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhccceEEEecccccch------------------------
Confidence            34566678999999999 99999999999887544333322 34555555543210                        


Q ss_pred             cCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        341 DLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      +....+.+.|++      ..+|+++++|++|+++.
T Consensus        69 ~~~~~l~~~~~v------~~~Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          69 AQDVALLKHLNV------LGLPTILFFDGQGQEHP   97 (117)
T ss_dssp             HHHHHHHHHTTC------CSSSEEEEECTTSCBCG
T ss_pred             hHHHHHHhhheh------hhceEEEEEeCCCcEEe
Confidence            112456778998      68899999999998775

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.84  E-value=6.7e-09  Score=79.08  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=59.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|....|.+.++.+++++ .+.++.|+.|.                            ...+++
T Consensus        16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~   65 (105)
T d1nw2a_          16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTS   65 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECCC----------------------------CcccHH
Confidence            4689999999 99999999999999999998864 47787777642                            244567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|+|      ..+|+.+++ ++|+.+.++.+
T Consensus        66 ~~~V------~~~Pt~~~~-~~G~~~~~~~G   89 (105)
T d1nw2a_          66 QFGI------MSIPTLILF-KGGEPVKQLIG   89 (105)
T ss_dssp             HTTC------CBSSEEEEE-ETTEEEEEEES
T ss_pred             HCCc------ceeeEEEEE-ECCEEEEEEEC
Confidence            8898      688988877 58999887763

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.84  E-value=7.9e-12  Score=104.29  Aligned_cols=52  Identities=13%  Similarity=0.048  Sum_probs=42.9

Q ss_pred             ceeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        260 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       260 g~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      ...-.+.+++|++++++|| ++|||+|+.++|.|++++++++  ++.+..|++|.
T Consensus        44 ~~~~~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~   95 (166)
T d1z6na1          44 ALTERLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGR   95 (166)
T ss_dssp             HHHHHHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHH
T ss_pred             HHHHHHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECcc
Confidence            3344577889999999999 9999999999999999999875  46666777763

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=6.6e-09  Score=80.41  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|++||+|| ++||++|....|.+.++.+.++  ++.++-|..|.                            ...+++
T Consensus        27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~----------------------------~~~l~~   75 (114)
T d1xfla_          27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVAS   75 (114)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHHH
T ss_pred             cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEeee----------------------------ceeecc
Confidence            4789999999 9999999999999999988774  56666665542                            235678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +||+      ..+|+++++ ++|+++..+.+.
T Consensus        76 ~~~V------~~~Pt~~~~-~~G~~v~~~~G~  100 (114)
T d1xfla_          76 DWAI------QAMPTFMFL-KEGKILDKVVGA  100 (114)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEESC
T ss_pred             ccce------eeeEEEEEE-ECCEEEEEEeCc
Confidence            8998      788987777 699999877643

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.80  E-value=1.4e-08  Score=77.58  Aligned_cols=73  Identities=15%  Similarity=0.145  Sum_probs=59.5

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +|+++|.|| ++||++|....|.+.++.+++++ .+.++.|+.|                            ....++++
T Consensus        20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d----------------------------~~~~l~~~   69 (108)
T d1thxa_          20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEID----------------------------PNPTTVKK   69 (108)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEEST----------------------------TCHHHHHH
T ss_pred             CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceeccc----------------------------ccHHHHHH
Confidence            578999999 99999999999999999988864 3777777654                            22457788


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |++      ..+|+++++. +|+.+..+.+
T Consensus        70 ~~I------~~~Pt~~~~~-~g~~v~~~~G   92 (108)
T d1thxa_          70 YKV------EGVPALRLVK-GEQILDSTEG   92 (108)
T ss_dssp             TTC------CSSSEEEEEE-TTEEEEEEES
T ss_pred             hcc------cCCCEEEEEE-CCEEEEEEeC
Confidence            999      6889888886 8999887763

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.79  E-value=4.6e-11  Score=99.52  Aligned_cols=102  Identities=14%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             EEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC-HHhHHhhccCccccCCCCccceeEEee
Q psy17178         73 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEGGLGKLKIPLLSD  151 (384)
Q Consensus        73 ~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p~l~D  151 (384)
                      -.+.+++|+.++|+|| ++|||+|+.++|.|.++++++.  ++.+..|+.|. ++..++|...       +...+|.+.+
T Consensus        47 ~~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~~~~~~~~~~~~-------~~~~~p~~~~  116 (166)
T d1z6na1          47 ERLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLAL-------ERIAIPLVLV  116 (166)
T ss_dssp             HHHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTC-------SSCCSSEEEE
T ss_pred             HHHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECccCHHHHHHHHHh-------ccccccceee
Confidence            3467888999999999 9999999999999999999875  45666677664 3333444332       1455555544


Q ss_pred             CcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        152 LTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       152 ~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      .++.....+.. .          ..|.+++.+.+|.+..++.|.
T Consensus       117 ~d~~~~~~~~~-~----------~~P~~~~~~~~~~~~~~~~G~  149 (166)
T d1z6na1         117 LDEEFNLLGRF-V----------ERPQAVLDGGPQALAAYKAGD  149 (166)
T ss_dssp             ECTTCCEEEEE-E----------SSCHHHHHHCHHHHHHHHTTT
T ss_pred             cCccchhcccc-c----------ccchhheecccceeeeecccc
Confidence            33322111111 1          012344667777777766664

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.77  E-value=1.4e-08  Score=77.53  Aligned_cols=74  Identities=9%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|....|.+.++.+++.+ .+.++.|+.|.                            ...+++
T Consensus        18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~----------------------------~~~l~~   67 (107)
T d1dbya_          18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS   67 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEeccc----------------------------chhHHH
Confidence            4689999999 99999999999999999887754 35677666542                            245778


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|+.++++ +|+.+..+.+
T Consensus        68 ~~~V------~~~Pt~~~~~-~G~~v~~~~G   91 (107)
T d1dbya_          68 EYGI------RSIPTIMVFK-GGKKCETIIG   91 (107)
T ss_dssp             HHTC------CSSCEEEEES-SSSEEEEEES
T ss_pred             Hhcc------cceEEEEEEE-CCeEEEEEeC
Confidence            8999      7899988885 8999987763

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.77  E-value=9.1e-09  Score=79.34  Aligned_cols=74  Identities=12%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|....|.++++.+++++ ++.++.|+.|.                            ...+.+
T Consensus        23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~   72 (112)
T d1ep7a_          23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAE   72 (112)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHH
T ss_pred             cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccc----------------------------cccccc
Confidence            5789999999 99999999999999999998864 48888887752                            234677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +||+      ..+|+++++ ++|+.+..+..
T Consensus        73 ~~~v------~~~Pt~~~~-~~G~~v~~~~G   96 (112)
T d1ep7a_          73 AAGI------TAMPTFHVY-KDGVKADDLVG   96 (112)
T ss_dssp             HHTC------CBSSEEEEE-ETTEEEEEEES
T ss_pred             cccc------cCCCEEEEE-ECCEEEEEEeC
Confidence            8998      688986666 69999987764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.75  E-value=9e-09  Score=79.50  Aligned_cols=73  Identities=14%  Similarity=0.084  Sum_probs=59.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++++++|+|| ++||++|....|.|.++.+++.  ++.++-|+.|.                            ...+++
T Consensus        25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~   73 (113)
T d1r26a_          25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIVS   73 (113)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCccchhhceeccccccccc--ccccccccccc----------------------------chhhHH
Confidence            5678999999 9999999999999999998873  68888777653                            245678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .||+      ...|+.+++ ++|+.+..+.+
T Consensus        74 ~~~V------~~~Pt~~~~-~~G~~v~~~~G   97 (113)
T d1r26a_          74 KCRV------LQLPTFIIA-RSGKMLGHVIG   97 (113)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             Hccc------cCCCEEEEE-ECCEEEEEEeC
Confidence            8999      688887666 69999987774

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.73  E-value=2.1e-08  Score=77.38  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|++||+|| ++||++|+...|.+.++.+++  .++.++-|..|.                            ...+++
T Consensus        25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~--~~~~~~~vd~d~----------------------------~~~l~~   73 (113)
T d1ti3a_          25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKF--PNVTFLKVDVDE----------------------------LKAVAE   73 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHC--SSEEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-cCccccchhhhhhhhhhhccC--CCceEEeeeeec----------------------------cccccc
Confidence            4689999999 999999999999999998876  356666665542                            245678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      +|++      ..+|+.+++ ++|+.+..+...
T Consensus        74 ~~~I------~~~Pt~~~~-k~G~~v~~~~G~   98 (113)
T d1ti3a_          74 EWNV------EAMPTFIFL-KDGKLVDKTVGA   98 (113)
T ss_dssp             HHHC------SSTTEEEEE-ETTEEEEEEECC
T ss_pred             cCee------cccceEEEE-ECCEEEEEEcCC
Confidence            8999      788987777 499999977653

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.73  E-value=1.5e-08  Score=78.13  Aligned_cols=74  Identities=9%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +|+++|+|| ++||++|....|.+.++.+++.  ++.++.|..|.                           ....+.+.
T Consensus        25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~l~~~   74 (112)
T d1f9ma_          25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTLAKE   74 (112)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHHHHH
T ss_pred             CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc---------------------------cchhhHhh
Confidence            478999999 9999999999999999999874  57777776542                           12356788


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      ||+      ..+|+++++ ++|+++..+.+.
T Consensus        75 ~~V------~~~Pt~~~~-k~G~~v~~~~G~   98 (112)
T d1f9ma_          75 LGI------RVVPTFKIL-KENSVVGEVTGA   98 (112)
T ss_dssp             HCC------SSSSEEEEE-ETTEEEEEEESS
T ss_pred             eee------ccCCEEEEE-ECCEEEEEEeCC
Confidence            999      789998888 699999977753

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.3e-08  Score=77.72  Aligned_cols=74  Identities=9%  Similarity=0.083  Sum_probs=59.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|.++|+|| ++||++|....|.+.++.+++.  ++.++-|..|.                            ...+++
T Consensus        20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~----------------------------~~~l~~   68 (107)
T d1gh2a_          20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ----------------------------CQGTAA   68 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCEEEEEEE-CCCCCCccccchhhhccccccc--ccccccccccc----------------------------chhhhh
Confidence            4789999999 9999999999999999998874  57777776552                            234667


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERG  380 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~  380 (384)
                      .||+      ..+|+.++. ++|+.+..+.+.
T Consensus        69 ~~~v------~~~Pt~~~~-~~G~~v~~~~G~   93 (107)
T d1gh2a_          69 TNNI------SATPTFQFF-RNKVRIDQYQGA   93 (107)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEESS
T ss_pred             hcCc------eeceEEEEE-ECCEEEEEEeCC
Confidence            8998      688987777 799999987753

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.4e-08  Score=76.31  Aligned_cols=74  Identities=11%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|+++|+|| ++||++|+...|.+.++.+++.. .+.++.+..|                            ....+++
T Consensus        19 ~~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d----------------------------~~~~l~~   68 (108)
T d2trxa_          19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID----------------------------QNPGTAP   68 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT----------------------------TCTTHHH
T ss_pred             CCCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeecccc----------------------------chhhHHH
Confidence            3689999999 99999999999999998877643 3555555544                            2345678


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .||+      ..+|+++++ ++|+.+..+.+
T Consensus        69 ~~~v------~~~PT~~~~-~~G~~v~~~~G   92 (108)
T d2trxa_          69 KYGI------RGIPTLLLF-KNGEVAATKVG   92 (108)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             HhCC------CcEEEEEEE-ECCEEEEEEeC
Confidence            8999      788976666 58999987764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.70  E-value=2.2e-08  Score=75.94  Aligned_cols=73  Identities=10%  Similarity=0.045  Sum_probs=57.5

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +|+++|+|| ++||++|....|.+.++.+++.+. +.++.|+.|                            ....++++
T Consensus        17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d----------------------------~~~~l~~~   66 (104)
T d1fb6a_          17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTD----------------------------EAPGIATQ   66 (104)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETT----------------------------TCHHHHHH
T ss_pred             CCcEEEEEE-cCccCCccccCchhHHHHHhhcCc-cceeEEecc----------------------------cchhhhhh
Confidence            578999999 999999999999999999887543 455555544                            23467888


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      |++      ..+|+++++ ++|+.+..+.+
T Consensus        67 ~~V------~~~Pt~~~~-~~G~~v~~~~G   89 (104)
T d1fb6a_          67 YNI------RSIPTVLFF-KNGERKESIIG   89 (104)
T ss_dssp             TTC------CSSSEEEEE-ETTEEEEEEEE
T ss_pred             cce------eeeeEEEEE-EcCeEEEEEeC
Confidence            999      788987776 69999987763

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=4.2e-08  Score=74.70  Aligned_cols=78  Identities=12%  Similarity=-0.045  Sum_probs=55.4

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh---CCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecC
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  342 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  342 (384)
                      .+..++++|++|| ++||++|+...|.++++..+...   ..+.+..|+.+.                            
T Consensus        11 ~~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~----------------------------   61 (107)
T d1a8la2          11 RNIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE----------------------------   61 (107)
T ss_dssp             TTCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG----------------------------
T ss_pred             HhcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc----------------------------
Confidence            4445566677888 99999999999999999766543   224444444321                            


Q ss_pred             chHHHHHhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        343 THKISLDYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       343 ~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      ...++++|||      ..+|+ +++.++|+.+.++.+
T Consensus        62 ~~~l~~~~~V------~~vPT-i~i~~~G~~~~~~~G   91 (107)
T d1a8la2          62 YPEWADQYNV------MAVPK-IVIQVNGEDRVEFEG   91 (107)
T ss_dssp             CHHHHHHTTC------CSSCE-EEEEETTEEEEEEES
T ss_pred             cccccccccc------ccceE-EEEEeCCeEEEEEEC
Confidence            1356788999      78896 566789999987764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.7e-08  Score=74.86  Aligned_cols=73  Identities=18%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|++||+|| ++||++|....|.+.++.+++.  ++.++-|..|.                            ...+++
T Consensus        19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~----------------------------~~~~~~   67 (105)
T d2ifqa1          19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD----------------------------CQDVAS   67 (105)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeeccccc----------------------------CHhHHH
Confidence            4689999999 9999999999999999988774  45565555542                            234567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ...|+.+++ ++|+.+..+.+
T Consensus        68 ~~~V------~~~Pt~~~~-~~G~~v~~~~G   91 (105)
T d2ifqa1          68 ECEV------KCMPTFQFF-KKGQKVGEFSG   91 (105)
T ss_dssp             HTTC------CBSSEEEEE-ETTEEEEEEES
T ss_pred             HcCc------eEEEEEEEE-ECCEEEEEEeC
Confidence            8898      688988877 69999998774

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.66  E-value=3.7e-09  Score=82.47  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ..+++++.|| +.|||+|+...|.|.++.++|.+..+.+.-|..|.                            +..+++
T Consensus        29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~----------------------------~~~l~~   79 (119)
T d2es7a1          29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ----------------------------SEAIGD   79 (119)
T ss_dssp             CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH----------------------------HHHHHH
T ss_pred             CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC----------------------------CHHHHH
Confidence            3468888899 99999999999999999999876556555554331                            245677


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW  384 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~  384 (384)
                      .||+      ...|+++++ ++|+.+..+. |..||
T Consensus        80 ~~~V------~~~Pt~~~~-~~G~~v~~~~-G~~~~  107 (119)
T d2es7a1          80 RFNV------RRFPATLVF-TDGKLRGALS-GIHPW  107 (119)
T ss_dssp             TTTC------CSSSEEEEE-SCC----CEE-SCCCH
T ss_pred             hcCc------CcceEEEEE-EcCeEEEEee-CCCCH
Confidence            8888      688988887 6999998665 55543

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=4.2e-09  Score=83.69  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=60.2

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +++|+|.|| +.|||+|....|.|.++.++|.+..+.+.-|..|.                            +.++++.
T Consensus        36 ~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~----------------------------~~~la~~   86 (132)
T d2hfda1          36 DGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ----------------------------SEAIGDR   86 (132)
T ss_dssp             EEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH----------------------------HHHHHHH
T ss_pred             CcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC----------------------------CHHHHHh
Confidence            468888999 99999999999999999998876655555554431                            2467888


Q ss_pred             hCceecCCCceeeEEEEEeCCceEEEEEecCCCCC
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIVYWFERGNCDW  384 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~~~~~~~~~d~  384 (384)
                      ||+      ...|+++++ ++|+.+..+. |..||
T Consensus        87 ~~V------~~~PT~~~~-~~G~~v~~~~-G~~~~  113 (132)
T d2hfda1          87 FGV------FRFPATLVF-TGGNYRGVLN-GIHPW  113 (132)
T ss_dssp             HTC------CSCCEEEEE-ETTEEEEEEC-CCSCH
T ss_pred             hcc------CcceeEEEE-EcCcEeeeec-CCCCH
Confidence            999      788987777 7999998665 55543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=6.4e-09  Score=80.07  Aligned_cols=48  Identities=23%  Similarity=0.337  Sum_probs=38.3

Q ss_pred             EccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         74 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        74 ~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .|.+..||++||.|| ++||++|+...|.++++.+++++ .+.++.|..|
T Consensus        19 ~l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d   66 (111)
T d1xwaa_          19 QLTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVD   66 (111)
T ss_dssp             HHHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT
T ss_pred             HHHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEee
Confidence            456667999999999 99999999999999999988853 2445555443

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.54  E-value=1.4e-08  Score=73.98  Aligned_cols=68  Identities=15%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  349 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  349 (384)
                      +|+.|++|| |+||++|+...|.+.++.+++.+ .+.++.+..|                            .+..++++
T Consensus         2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d----------------------------~~~~la~~   51 (85)
T d1fo5a_           2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVM----------------------------ENPQKAME   51 (85)
T ss_dssp             CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESS----------------------------SSCCTTTS
T ss_pred             CceEEEEEE-CCCCcChHhhhhhcccccccccc-cccccccccc----------------------------cccccccc
Confidence            588899999 99999999999999998876642 2444444433                            22344567


Q ss_pred             hCceecCCCceeeEEEEEeCCceEE
Q psy17178        350 YGVYLSDQGHTLDKYCLECYKMVIV  374 (384)
Q Consensus       350 ~gv~~~~~~~~~p~~~lId~~G~i~  374 (384)
                      ||+      ..+|+ ++++++|+++
T Consensus        52 ~~V------~~~Pt-~~i~~~g~~~   69 (85)
T d1fo5a_          52 YGI------MAVPT-IVINGDVEFI   69 (85)
T ss_dssp             TTT------CCSSE-EEETTEEECC
T ss_pred             CCc------eEeeE-EEEECCcEEE
Confidence            888      67887 5678888754

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.4e-08  Score=79.10  Aligned_cols=82  Identities=11%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             EccccCCCeEEEEEeeCC-------CCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccce
Q psy17178         74 KLSDYYGKYLVFFFYPLD-------FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  146 (384)
Q Consensus        74 ~l~~~~gk~vvl~f~~~~-------~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~  146 (384)
                      .+++.+||+++|+|| |+       ||++|+...|.+.++.+++++ ++.++.|++|...                    
T Consensus        15 ~l~~~~gk~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~--------------------   72 (119)
T d1woua_          15 AVEQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP--------------------   72 (119)
T ss_dssp             HHHTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH--------------------
T ss_pred             HHHHcCCCEEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCc--------------------
Confidence            345668999999999 64       999999999999999887753 5888999887632                    


Q ss_pred             eEEeeCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcc
Q psy17178        147 PLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVN  189 (384)
Q Consensus       147 p~l~D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~  189 (384)
                       ...|....+++.|||        +|++   ++++++..+++.
T Consensus        73 -~~~d~~~~l~~~~~V--------~~iP---T~i~~~~g~~l~  103 (119)
T d1woua_          73 -YWKDPNNDFRKNLKV--------TAVP---TLLKYGTPQKLV  103 (119)
T ss_dssp             -HHHCTTCHHHHHHCC--------CSSS---EEEETTSSCEEE
T ss_pred             -ccchhhhhHHHhCCe--------EEEE---EEEEEECCeEEe
Confidence             123345667888888        3333   445566555554

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.52  E-value=2.1e-07  Score=70.20  Aligned_cols=73  Identities=7%  Similarity=0.137  Sum_probs=57.6

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+++++|+|| ++||++|....|.+.++.+++.  ++.++-++.|.                            ...+.+
T Consensus        17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~----------------------------~~~~~~   65 (103)
T d1syra_          17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE----------------------------VSEVTE   65 (103)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------THHHHH
T ss_pred             CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeecccc----------------------------Ccceee
Confidence            4689999999 9999999999999999998874  45666666542                            234667


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|++      ..+|++++. ++|+.+..+.+
T Consensus        66 ~~~V------~~~Pt~i~~-k~G~~v~~~~G   89 (103)
T d1syra_          66 KENI------TSMPTFKVY-KNGSSVDTLLG   89 (103)
T ss_dssp             HTTC------CSSSEEEEE-ETTEEEEEEES
T ss_pred             eeee------ecceEEEEE-ECCEEEEEEeC
Confidence            8998      688976666 69999987764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.51  E-value=1.7e-07  Score=72.28  Aligned_cols=78  Identities=10%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .++.++|+|| +.|||+|+...|.+.++.++++   ..+..|++|..+....                      ...+.+
T Consensus        25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~~----------------------~~~~~~   78 (115)
T d1zmaa1          25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLND----------------------LQAFRS   78 (115)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHHH----------------------HHHHHH
T ss_pred             cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeeccccccc----------------------cccccc
Confidence            4778999999 9999999999999999988774   3455666664332221                      134567


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      +|+|      ..+|+.+++. +|+++.++.+
T Consensus        79 ~~~V------~~~PTli~~~-~gk~~~~~~G  102 (115)
T d1zmaa1          79 RYGI------PTVPGFVHIT-DGQINVRCDS  102 (115)
T ss_dssp             HHTC------CSSCEEEEEE-TTEEEEECCT
T ss_pred             cccc------ccccEEEEEE-CCEEEEEEcC
Confidence            8898      6889988885 8999886653

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.3e-07  Score=73.75  Aligned_cols=70  Identities=9%  Similarity=0.014  Sum_probs=54.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      .+|++||.|| +.||++|....|.+.++.+++++ .+.++-|.+|..                            ..+++
T Consensus        21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~----------------------------~~la~   70 (137)
T d1qgva_          21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV----------------------------PDFNK   70 (137)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC----------------------------CTTTT
T ss_pred             CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeecccc----------------------------chhhh
Confidence            4689999999 99999999999999999999964 377878887632                            13455


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .|+|      ...|++++.. +|+.+.
T Consensus        71 ~~~I------~~~PT~~~f~-~g~~i~   90 (137)
T d1qgva_          71 MYEL------YDPCTVMFFF-RNKHIM   90 (137)
T ss_dssp             SSCS------CSSCEEEEEE-TTEEEE
T ss_pred             hcCe------eeEEEEEEEe-CCcEEE
Confidence            6787      6778777774 666655

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1e-07  Score=73.65  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=53.4

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHh-CCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEe
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  150 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  150 (384)
                      ...+++.+||+++|+|| ++||++|+...|.+.+..+..+. .++..+.+..+..                        .
T Consensus        14 ~~~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------~   68 (117)
T d2fwha1          14 NQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAN------------------------D   68 (117)
T ss_dssp             HHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTC------------------------C
T ss_pred             HHHHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhccceEEEecccccc------------------------h
Confidence            34567778999999999 99999999988887443332222 2444444433210                        0


Q ss_pred             eCcchhHHhhcCcccCCCCcccceeEEEEEEEecCCCccc
Q psy17178        151 DLTHKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNG  190 (384)
Q Consensus       151 D~~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~  190 (384)
                      +...++++.|||        .|+   |+++++|++|++..
T Consensus        69 ~~~~~l~~~~~v--------~~~---Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          69 AQDVALLKHLNV--------LGL---PTILFFDGQGQEHP   97 (117)
T ss_dssp             HHHHHHHHHTTC--------CSS---SEEEEECTTSCBCG
T ss_pred             hHHHHHHhhheh--------hhc---eEEEEEeCCCcEEe
Confidence            122456777887        333   46678999998753

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.37  E-value=3.3e-07  Score=69.29  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|+++|+|| +.||++|....|.+.++.+++++ .+.++.|+.|
T Consensus        16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~   58 (105)
T d1nw2a_          16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVD   58 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETT
T ss_pred             CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECC
Confidence            3579999999 99999999999999999998864 4777666654

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.37  E-value=2.5e-07  Score=70.31  Aligned_cols=76  Identities=16%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|+++|.|| ++||++|....|.+.++.+++.. .+.++-|+.|.                            ..++++
T Consensus        18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~----------------------------~~~l~~   67 (107)
T d1dbya_          18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS   67 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEeccc----------------------------chhHHH
Confidence            3689999999 99999999999999999887754 35565555442                            345777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      +|+|        ++.+   +++++ ++|+..+...|..
T Consensus        68 ~~~V--------~~~P---t~~~~-~~G~~v~~~~G~~   93 (107)
T d1dbya_          68 EYGI--------RSIP---TIMVF-KGGKKCETIIGAV   93 (107)
T ss_dssp             HHTC--------CSSC---EEEEE-SSSSEEEEEESCC
T ss_pred             Hhcc--------cceE---EEEEE-ECCeEEEEEeCCC
Confidence            7888        3333   34455 5888776655544

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.36  E-value=3.6e-07  Score=69.49  Aligned_cols=42  Identities=14%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +|+++|.|| ++||++|+...|.+.++.+++.+ .+.++.|+.|
T Consensus        20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d   61 (108)
T d1thxa_          20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEID   61 (108)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEEST
T ss_pred             CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceeccc
Confidence            478999999 99999999999999999888764 3666666554

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=2.4e-07  Score=71.30  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=34.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|++||.|| ++||++|+...|.+.++.+++.  ++.++-|..|
T Consensus        27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~   68 (114)
T d1xfla_          27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTD   68 (114)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred             cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEee
Confidence            4689999999 9999999999999999988774  4555555443

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.33  E-value=1.6e-07  Score=68.22  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=26.8

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH  111 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~  111 (384)
                      +|..|+.|| ++||++|+...|.+.++.+++.
T Consensus         2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~   32 (85)
T d1fo5a_           2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMP   32 (85)
T ss_dssp             CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS
T ss_pred             CceEEEEEE-CCCCcChHhhhhhccccccccc
Confidence            578888999 9999999999999988877653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.33  E-value=4e-07  Score=69.77  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|+++|.|| ++||++|+...|.+.++.+++++ .+.++.|+.|
T Consensus        23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d   65 (112)
T d1ep7a_          23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVD   65 (112)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT
T ss_pred             cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeecc
Confidence            4789999999 99999999999999999998863 4777777665

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.32  E-value=7.5e-08  Score=74.84  Aligned_cols=77  Identities=18%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      ..++++|.|| +.|||+|+...|.|.++.++|.+..+.+..|..|.                            ..++++
T Consensus        29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~----------------------------~~~l~~   79 (119)
T d2es7a1          29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ----------------------------SEAIGD   79 (119)
T ss_dssp             CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH----------------------------HHHHHH
T ss_pred             CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC----------------------------CHHHHH
Confidence            3457888888 99999999999999999999876556555554321                            244666


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      .|||        ++.   |+++++ ++|+.++...|..
T Consensus        80 ~~~V--------~~~---Pt~~~~-~~G~~v~~~~G~~  105 (119)
T d2es7a1          80 RFNV--------RRF---PATLVF-TDGKLRGALSGIH  105 (119)
T ss_dssp             TTTC--------CSS---SEEEEE-SCC----CEESCC
T ss_pred             hcCc--------Ccc---eEEEEE-EcCeEEEEeeCCC
Confidence            7777        222   334444 6888887777665

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.29  E-value=1.6e-06  Score=64.35  Aligned_cols=70  Identities=13%  Similarity=0.004  Sum_probs=51.8

Q ss_pred             cccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchH
Q psy17178        266 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  345 (384)
Q Consensus       266 ~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  345 (384)
                      .++.|.+.++.|+ +.|||+|+...|.++++.+++  .++.+..|+.|.                            ...
T Consensus        11 k~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~--~~i~~~~vd~~~----------------------------~~~   59 (96)
T d1hyua4          11 RDIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLN--PRIKHTAIDGGT----------------------------FQN   59 (96)
T ss_dssp             HHCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHC--TTEEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhC--CceEEEEEeccc----------------------------chH
Confidence            3456788888898 999999999999999988654  456666666553                            235


Q ss_pred             HHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        346 ISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       346 ~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      +++.||+      ..+|++++   +|+.++
T Consensus        60 l~~~~~I------~~vPt~~~---ng~~~~   80 (96)
T d1hyua4          60 EITERNV------MGVPAVFV---NGKEFG   80 (96)
T ss_dssp             HHHHTTC------CSSSEEEE---TTEEEE
T ss_pred             HHhhccc------ccccEEEE---CCEEEE
Confidence            5677888      67887654   777764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.5e-07  Score=70.36  Aligned_cols=42  Identities=14%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|.+||.|| ++||++|+...|.|.++.+++.  ++.++-|..|
T Consensus        20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d   61 (107)
T d1gh2a_          20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH   61 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETT
T ss_pred             CCCEEEEEEE-CCCCCCccccchhhhccccccc--cccccccccc
Confidence            4688999999 9999999999999999998874  5666666544

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.3e-07  Score=68.69  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+|++||.|| ++||++|+...|.+.++.+++.  ++.++-|..|
T Consensus        19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d   60 (105)
T d2ifqa1          19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD   60 (105)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT
T ss_pred             CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeecccc
Confidence            4589999999 9999999999999999988764  3445444443

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.25  E-value=5.9e-07  Score=65.15  Aligned_cols=63  Identities=14%  Similarity=0.199  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHHHhCc
Q psy17178        273 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV  352 (384)
Q Consensus       273 vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  352 (384)
                      .|..|| ++||++|+...|.++++.+++.+ ++.++-|+.|.                            +..++++||+
T Consensus         4 ~v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~~~~V   53 (85)
T d1nhoa_           4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV----------------------------DREKAIEYGL   53 (85)
T ss_dssp             CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT----------------------------CGGGGGGTCS
T ss_pred             EEEEEE-CCCCcchHHHHHHHhhhcccccc-ccccccccccc----------------------------chhhHHhcCc
Confidence            355688 99999999999999999998853 46777666552                            2345667888


Q ss_pred             eecCCCceeeEEEEEeCCce
Q psy17178        353 YLSDQGHTLDKYCLECYKMV  372 (384)
Q Consensus       353 ~~~~~~~~~p~~~lId~~G~  372 (384)
                            ..+|+. +++.+|+
T Consensus        54 ------~~~Pt~-~~~~~~~   66 (85)
T d1nhoa_          54 ------MAVPAI-AINGVVR   66 (85)
T ss_dssp             ------SCSSEE-EETTTEE
T ss_pred             ------eEeCEE-EECCcEE
Confidence                  678864 5566654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=1.1e-06  Score=68.04  Aligned_cols=44  Identities=9%  Similarity=0.125  Sum_probs=38.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .++.++|.|| ++||++|....|.+.++.+.+++.++.+..|+.|
T Consensus        26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~   69 (119)
T d2b5ea4          26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT   69 (119)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT
T ss_pred             cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeecc
Confidence            4578999999 9999999999999999999987777888878765

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.25  E-value=5.6e-07  Score=67.82  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHh
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  159 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  159 (384)
                      +|+++|.|| ++||++|+...|.+.++.+++.+. +.++.|+.|                            ...+++++
T Consensus        17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d----------------------------~~~~l~~~   66 (104)
T d1fb6a_          17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTD----------------------------EAPGIATQ   66 (104)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETT----------------------------TCHHHHHH
T ss_pred             CCcEEEEEE-cCccCCccccCchhHHHHHhhcCc-cceeEEecc----------------------------cchhhhhh
Confidence            578999999 999999999999999999887542 344444333                            33457888


Q ss_pred             hcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        160 YGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       160 ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |+|        ++++   + +++-++|+......|..
T Consensus        67 ~~V--------~~~P---t-~~~~~~G~~v~~~~G~~   91 (104)
T d1fb6a_          67 YNI--------RSIP---T-VLFFKNGERKESIIGAV   91 (104)
T ss_dssp             TTC--------CSSS---E-EEEEETTEEEEEEEECC
T ss_pred             cce--------eeee---E-EEEEEcCeEEEEEeCCC
Confidence            888        3434   2 33447898877666654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.24  E-value=8.1e-07  Score=68.09  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHH
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  158 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  158 (384)
                      .+|++||.|| ++||++|+...|.|.++.+++.  ++.++-|..|                            ...++++
T Consensus        25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~~~l~~   73 (113)
T d1ti3a_          25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD----------------------------ELKAVAE   73 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETT----------------------------TCHHHHH
T ss_pred             CCCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeeee----------------------------ccccccc
Confidence            4589999999 9999999999999999888763  4555544443                            2345777


Q ss_pred             hhcCcccCCCCcccceeEEEEEEEecCCCcccccce
Q psy17178        159 DYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGG  194 (384)
Q Consensus       159 ~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g  194 (384)
                      +|+|        ++++   +++++ ++|+......|
T Consensus        74 ~~~I--------~~~P---t~~~~-k~G~~v~~~~G   97 (113)
T d1ti3a_          74 EWNV--------EAMP---TFIFL-KDGKLVDKTVG   97 (113)
T ss_dssp             HHHC--------SSTT---EEEEE-ETTEEEEEEEC
T ss_pred             cCee--------cccc---eEEEE-ECCEEEEEEcC
Confidence            8888        3433   23333 68988776666

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.24  E-value=7.9e-07  Score=68.20  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=35.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| ++||++|+...|.|.++.+++.  ++.++-|+.|.
T Consensus        25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~   67 (113)
T d1r26a_          25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN   67 (113)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT
T ss_pred             CCCeEEEEEE-CCCCccchhhceeccccccccc--ccccccccccc
Confidence            4578999999 9999999999999999988873  67777666643

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.24  E-value=5.1e-07  Score=69.17  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHh
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  159 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  159 (384)
                      .|+++|.|| +.||++|+...|.+.++.+++.  ++.++.|..|.                           ...++++.
T Consensus        25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~l~~~   74 (112)
T d1f9ma_          25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTLAKE   74 (112)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHHHHH
T ss_pred             CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc---------------------------cchhhHhh
Confidence            478999999 9999999999999999998874  56666665442                           12356777


Q ss_pred             hcCcccCCCCcccceeEEEEEEEecCCCccccccee
Q psy17178        160 YGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGA  195 (384)
Q Consensus       160 ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~  195 (384)
                      |||        ++++   +++++ ++|++.....|.
T Consensus        75 ~~V--------~~~P---t~~~~-k~G~~v~~~~G~   98 (112)
T d1f9ma_          75 LGI--------RVVP---TFKIL-KENSVVGEVTGA   98 (112)
T ss_dssp             HCC--------SSSS---EEEEE-ETTEEEEEEESS
T ss_pred             eee--------ccCC---EEEEE-ECCEEEEEEeCC
Confidence            888        3333   34444 688887666663

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=1.7e-06  Score=65.33  Aligned_cols=80  Identities=11%  Similarity=-0.015  Sum_probs=51.0

Q ss_pred             cccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC---CcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeC
Q psy17178         76 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI---NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  152 (384)
Q Consensus        76 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~---~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  152 (384)
                      .+..++.+|+.|| ++|||+|+...|.+.++..+....   .+.+..|+.+                            .
T Consensus        11 ~~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~----------------------------~   61 (107)
T d1a8la2          11 RNIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI----------------------------E   61 (107)
T ss_dssp             TTCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG----------------------------G
T ss_pred             HhcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEeccc----------------------------c
Confidence            3444455566788 999999999999999987654322   2333333222                            1


Q ss_pred             cchhHHhhcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        153 THKISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       153 ~~~~~~~ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      ..++++.|||        .|++   + +++.++|++.....|..
T Consensus        62 ~~~l~~~~~V--------~~vP---T-i~i~~~G~~~~~~~G~~   93 (107)
T d1a8la2          62 YPEWADQYNV--------MAVP---K-IVIQVNGEDRVEFEGAY   93 (107)
T ss_dssp             CHHHHHHTTC--------CSSC---E-EEEEETTEEEEEEESCC
T ss_pred             cccccccccc--------ccce---E-EEEEeCCeEEEEEECCC
Confidence            1357788998        3433   2 46678998876666554

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.2e-06  Score=66.44  Aligned_cols=41  Identities=10%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  122 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~  122 (384)
                      +|+++|.|| ++||++|+...|.+.++.+++.. .+.++.|..
T Consensus        20 ~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~   60 (108)
T d2trxa_          20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNI   60 (108)
T ss_dssp             SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEET
T ss_pred             CCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeeccc
Confidence            579999999 99999999999999988776643 344444433

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.2e-07  Score=71.12  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=49.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC--cEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  346 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  346 (384)
                      .+|.++|.|| ++||++|+...|.+.++.++++..+  +.++-|+.+                            ....+
T Consensus        23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~~l   73 (120)
T d1meka_          23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT----------------------------EESDL   73 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT----------------------------TCCSS
T ss_pred             cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeeccccc----------------------------cchhH
Confidence            4789999999 9999999999999999998886543  344444433                            22345


Q ss_pred             HHHhCceecCCCceeeEEEEEeCCce
Q psy17178        347 SLDYGVYLSDQGHTLDKYCLECYKMV  372 (384)
Q Consensus       347 ~~~~gv~~~~~~~~~p~~~lId~~G~  372 (384)
                      ...|++      ..+|+++++. +|+
T Consensus        74 ~~~~~i------~~~Pt~~~~~-~G~   92 (120)
T d1meka_          74 AQQYGV------RGYPTIKFFR-NGD   92 (120)
T ss_dssp             HHHHTC------CSSSEEEEEE-SSC
T ss_pred             HHHhCC------ccCCeEEEEE-CCe
Confidence            677888      6788877774 443

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.19  E-value=9.4e-07  Score=67.92  Aligned_cols=42  Identities=10%  Similarity=0.052  Sum_probs=33.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+++++|.|| +.|||+|+...|.|.++.++++   ..+..|..+.
T Consensus        25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~   66 (115)
T d1zmaa1          25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEE   66 (115)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTC
T ss_pred             cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeec
Confidence            3678999999 9999999999999999988764   3345566654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.2e-07  Score=74.94  Aligned_cols=76  Identities=17%  Similarity=0.161  Sum_probs=52.7

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCCHHhHHhhccCccccCCCCccceeEEeeCcchhHHh
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  159 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  159 (384)
                      +++|+|.|| +.|||+|+...|.|.++.++|.+..+.+.-|..|.                            +.++++.
T Consensus        36 ~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~----------------------------~~~la~~   86 (132)
T d2hfda1          36 DGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ----------------------------SEAIGDR   86 (132)
T ss_dssp             EEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH----------------------------HHHHHHH
T ss_pred             CcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC----------------------------CHHHHHh
Confidence            467888889 99999999999999999988876555544443332                            2457778


Q ss_pred             hcCcccCCCCcccceeEEEEEEEecCCCcccccceee
Q psy17178        160 YGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGAL  196 (384)
Q Consensus       160 ygv~~~~~g~~~g~~~~~~~~vid~~G~v~~~~~g~~  196 (384)
                      |||        .+++   +++++ ++|+..+...|..
T Consensus        87 ~~V--------~~~P---T~~~~-~~G~~v~~~~G~~  111 (132)
T d2hfda1          87 FGV--------FRFP---ATLVF-TGGNYRGVLNGIH  111 (132)
T ss_dssp             HTC--------CSCC---EEEEE-ETTEEEEEECCCS
T ss_pred             hcc--------Ccce---eEEEE-EcCcEeeeecCCC
Confidence            888        2333   33333 8888876666654

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.1e-07  Score=72.82  Aligned_cols=48  Identities=13%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+...||+++|+|| ++||++|+...+.+.+..+..+ .+..++.|.+|.
T Consensus        20 ~A~~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~   67 (135)
T d1sena_          20 EAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISE-LSHNFVMVNLED   67 (135)
T ss_dssp             HHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEG
T ss_pred             HHHHcCCcEEEEEE-ecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCC
Confidence            34446899999999 9999999999999887654433 223345555553

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.2e-07  Score=70.26  Aligned_cols=50  Identities=14%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  314 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~  314 (384)
                      +..+.-.||+++|+|| ++||++|+.+.|.+.+..+..+. +..++.|++|.
T Consensus        18 l~~A~~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~   67 (135)
T d1sena_          18 KKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLED   67 (135)
T ss_dssp             HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEG
T ss_pred             HHHHHHcCCcEEEEEE-ecCCCCceecchhhhhhHHHHHh-cCCcEEEeCCC
Confidence            3445557999999999 99999999999999887554332 22355666653

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.00  E-value=5.8e-06  Score=61.92  Aligned_cols=42  Identities=10%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      .+++++|.|| ++||++|....|.+.++.+++.  ++.++-|+.|
T Consensus        17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d   58 (103)
T d1syra_          17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVD   58 (103)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT
T ss_pred             CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeeccc
Confidence            3578999999 9999999999999999998874  4555555544

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.2e-05  Score=62.74  Aligned_cols=81  Identities=9%  Similarity=-0.058  Sum_probs=52.7

Q ss_pred             eccccCCCeEEEEEEeCCCCcCchHhHHHH---HHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEe
Q psy17178        264 KLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  340 (384)
Q Consensus       264 ~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (384)
                      ..+.-.+|+++|+|+ +.||+.|+..-...   .++.+-+ ++++.++.|+.|+++.                       
T Consensus        36 ~~Ak~~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l-~~~fV~~~v~~~~~e~-----------------------   90 (147)
T d2dlxa1          36 ECGQMQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEEG-----------------------   90 (147)
T ss_dssp             HHHHHHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSHHH-----------------------
T ss_pred             HHHHHcCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHH-hhheeEeeecccchhh-----------------------
Confidence            334446899999999 99999997654322   2222222 2346666666665431                       


Q ss_pred             cCchHHHHHhCceecCCCceeeEEEEEeC-CceEEEEEe
Q psy17178        341 DLTHKISLDYGVYLSDQGHTLDKYCLECY-KMVIVYWFE  378 (384)
Q Consensus       341 D~~~~~~~~~gv~~~~~~~~~p~~~lId~-~G~i~~~~~  378 (384)
                         ..+.+.|++      ...|++++||+ +|+++..+.
T Consensus        91 ---~~~~~~y~v------~~~Pti~~idp~~ge~v~~~~  120 (147)
T d2dlxa1          91 ---QRYIQFYKL------GDFPYVSILDPRTGQKLVEWH  120 (147)
T ss_dssp             ---HHHHHHHTC------CSSSEEEEECTTTCCCCEEES
T ss_pred             ---hhhhhheec------CceeEEEEEeCCCCeEecccC
Confidence               334667888      57889999997 588776543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9e-06  Score=64.27  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=37.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .+|++||.|| +.||++|....|.+.++.+++++ .+.++-|..|.
T Consensus        21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~   64 (137)
T d1qgva_          21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE   64 (137)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT
T ss_pred             CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeeccc
Confidence            4689999999 99999999999999999999863 36777777764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=5.7e-05  Score=57.86  Aligned_cols=45  Identities=9%  Similarity=0.124  Sum_probs=37.7

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      .++.++|.|| +.||++|....|.+.++.+.+++.++.+..|+.+.
T Consensus        26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~   70 (119)
T d2b5ea4          26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE   70 (119)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT
T ss_pred             cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeeccc
Confidence            3578899999 99999999999999999999876677777776653

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=1.7e-05  Score=62.75  Aligned_cols=44  Identities=14%  Similarity=0.336  Sum_probs=35.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d  313 (384)
                      .+|.++|.|| +.||++|+...|.+.++.+.+++.+..+..+..|
T Consensus        29 ~~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d   72 (140)
T d2b5ea1          29 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLD   72 (140)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred             CCCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeee
Confidence            3678999999 9999999999999999999998755444444554

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.51  E-value=4.8e-05  Score=54.53  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             EEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         84 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        84 vl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      |..|| ++|||+|+...|.+.++.+++.+ ++.++-|+.|
T Consensus         5 v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d   42 (85)
T d1nhoa_           5 IEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIM   42 (85)
T ss_dssp             EEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTT
T ss_pred             EEEEE-CCCCcchHHHHHHHhhhcccccc-cccccccccc
Confidence            55688 99999999999999999998854 4666666554

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=0.00021  Score=54.82  Aligned_cols=42  Identities=17%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHh--CCcEEEEEeCC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVD  313 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~--~~v~vv~Is~d  313 (384)
                      +.|.+||.|| ++||++|+.  |.+.++.+++++  ..+.+.-|..+
T Consensus        18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~   61 (122)
T d2c0ga2          18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVK   61 (122)
T ss_dssp             TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccc
Confidence            4589999999 999999994  999999998865  34555556554

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=9.7e-05  Score=54.25  Aligned_cols=45  Identities=18%  Similarity=0.111  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCCC
Q psy17178         77 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  124 (384)
Q Consensus        77 ~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d~  124 (384)
                      ++.|...++.|+ +.|||+|+...|.++++.+++  .++.+..|..+.
T Consensus        12 ~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~--~~i~~~~vd~~~   56 (96)
T d1hyua4          12 DIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLN--PRIKHTAIDGGT   56 (96)
T ss_dssp             HCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHC--TTEEEEEEETTT
T ss_pred             hcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhC--CceEEEEEeccc
Confidence            456777888898 999999999999999987654  346665555543

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.9e-05  Score=60.62  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  114 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~  114 (384)
                      .+|.++|.|| ++||++|+...|.+.++.++++..+
T Consensus        23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~   57 (120)
T d1meka_          23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEG   57 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTC
T ss_pred             cCCcEEEEEE-CCCcCCccccchhhhhhcccccccc
Confidence            3689999999 9999999999999999998886543

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=2.5e-05  Score=61.76  Aligned_cols=43  Identities=14%  Similarity=0.368  Sum_probs=35.0

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +|+++|.|| +.||++|+...|.+.++.+.+++.+..+..+..|
T Consensus        30 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d   72 (140)
T d2b5ea1          30 KKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLD   72 (140)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred             CCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeee
Confidence            578999999 9999999999999999999987655444444444

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.43  E-value=5.5e-05  Score=57.45  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=30.9

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  303 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~  303 (384)
                      .+|+++|.|| +.||++|+...|.+.++.+.+.+.
T Consensus        19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~   52 (116)
T d2djja1          19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKS   52 (116)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEE-ecccccccccchHHHHHHHHHhcc
Confidence            4688999999 999999999999999999999764

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.33  E-value=9.2e-05  Score=56.16  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  114 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~  114 (384)
                      .+|+++|.|| +.||++|+...|.+.++.+.+....
T Consensus        19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~~   53 (116)
T d2djja1          19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSE   53 (116)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCEEEEEE-ecccccccccchHHHHHHHHHhccc
Confidence            3578999999 9999999999999999999987643

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.11  E-value=0.0016  Score=49.67  Aligned_cols=70  Identities=6%  Similarity=-0.080  Sum_probs=44.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHH-------hCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEec
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-------QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  341 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~-------~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D  341 (384)
                      +.+.++|.|| +.||+.| ...|....+...+.       +.++.+..|+.+                            
T Consensus        27 ~~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~----------------------------   76 (124)
T d1a8ya1          27 KYEVLALLYH-EPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSE----------------------------   76 (124)
T ss_dssp             HCSEEEEEEE-CCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT----------------------------
T ss_pred             hCCeEEEEEE-CCCccch-hhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee----------------------------
Confidence            4578899999 9999854 45565555544442       233444444433                            


Q ss_pred             CchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        342 LTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       342 ~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      .+..+.+.|++      ..+|+.+++. +|+.+.
T Consensus        77 ~~~~l~~~~~I------~~yPTi~~f~-~g~~~~  103 (124)
T d1a8ya1          77 KDAAVAKKLGL------TEEDSIYVFK-EDEVIE  103 (124)
T ss_dssp             TSHHHHHTTTC------CSTTCEEEEE-SSSEEE
T ss_pred             cccchhhcccc------ccCCcEEEec-cCccEE
Confidence            33566778888      6788888886 566653

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.0002  Score=60.91  Aligned_cols=72  Identities=10%  Similarity=-0.053  Sum_probs=53.2

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeCCCHHhHHHHhcCccccCCCCCcceeEEecCchHHHH
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  348 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  348 (384)
                      ++.+|||.|| +.||+.|....+.|.++..+|.  ++.|+-|..+...    ..                         .
T Consensus       119 ~~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~~----~~-------------------------~  166 (217)
T d2trcp_         119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNTG----AG-------------------------D  166 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHHT----CS-------------------------T
T ss_pred             CCCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEccccch----hH-------------------------H
Confidence            3568999999 9999999999999999998884  5888887654110    11                         1


Q ss_pred             HhCceecCCCceeeEEEEEeCCceEEEEEec
Q psy17178        349 DYGVYLSDQGHTLDKYCLECYKMVIVYWFER  379 (384)
Q Consensus       349 ~~gv~~~~~~~~~p~~~lId~~G~i~~~~~~  379 (384)
                      .|++      ..+|+.+++ ++|+++..+..
T Consensus       167 ~~~i------~~lPtl~~y-k~G~~v~~~vg  190 (217)
T d2trcp_         167 RFSS------DVLPTLLVY-KGGELISNFIS  190 (217)
T ss_dssp             TSCG------GGCSEEEEE-ETTEEEEEETT
T ss_pred             hCCC------CCCCeEEEE-ECCEEEEEEEC
Confidence            2555      567877777 68998887653

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00039  Score=55.15  Aligned_cols=49  Identities=12%  Similarity=0.012  Sum_probs=30.3

Q ss_pred             ccccCCCeEEEEEeeCCCCCCchHHHHHH---HHhHHHHHhCCcEEEEEeCCCH
Q psy17178         75 LSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSH  125 (384)
Q Consensus        75 l~~~~gk~vvl~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~v~vi~Vs~d~~  125 (384)
                      .+.-.+|+++|+|+ +.||+.|+.--...   .++.+.+ +.++.++.|+.++.
T Consensus        37 ~Ak~~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l-~~~fV~~~v~~~~~   88 (147)
T d2dlxa1          37 CGQMQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSE   88 (147)
T ss_dssp             HHHHHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSH
T ss_pred             HHHHcCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHH-hhheeEeeecccch
Confidence            34446899999999 99999998643322   2222222 23566666666653

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.44  E-value=0.0012  Score=50.40  Aligned_cols=41  Identities=17%  Similarity=0.129  Sum_probs=30.8

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhC--CcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~v~vi~Vs~d  123 (384)
                      .|.++|.|| ++||+.|+.  |++.++.+++++.  .+.+.-|..+
T Consensus        19 ~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~   61 (122)
T d2c0ga2          19 FPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVK   61 (122)
T ss_dssp             SSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             CCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccc
Confidence            478999999 999999994  8999999887643  3444445443

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.006  Score=49.12  Aligned_cols=105  Identities=14%  Similarity=0.058  Sum_probs=58.0

Q ss_pred             eeeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEEeC-----CCHHhH---------HHHhcCcc
Q psy17178        261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-----DSHFTH---------LAWVNTPR  326 (384)
Q Consensus       261 ~~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----d~~~~~---------~~~~~~~~  326 (384)
                      ..+....-..+++|+.|. -..||.|....+.+.++.++.   .++++.+..     ++....         .++.+.+.
T Consensus        27 ~~i~~G~~~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~  102 (169)
T d1v58a1          27 HWLLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE  102 (169)
T ss_dssp             CCEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHH
T ss_pred             CCceeCCCCCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHH
Confidence            344444445567777777 888999999999998876543   366665532     111111         01111111


Q ss_pred             ccCCCCCcceeEEe--------cCchHHHHHhCceecCCCceeeEEEEEeCCceEEE
Q psy17178        327 KEGGLGKLKIPLLS--------DLTHKISLDYGVYLSDQGHTLDKYCLECYKMVIVY  375 (384)
Q Consensus       327 ~~~~~~~~~~~~~~--------D~~~~~~~~~gv~~~~~~~~~p~~~lId~~G~i~~  375 (384)
                      ......+...+...        +.+.++++.+|+      ..+|+.|+.|++|+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi------~gTPt~i~~~~~g~~~~  153 (169)
T d1v58a1         103 ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGA------NVTPAIYYMSKENTLQQ  153 (169)
T ss_dssp             HTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTC------CSSCEEEEEETTTEEEE
T ss_pred             HhhhcccccccchhhHHHHHHHHHHHHHHHhcCC------CCCCEEEEECCCCCEEE
Confidence            11000011111111        122466778888      68999888899998765

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.0061  Score=51.27  Aligned_cols=41  Identities=12%  Similarity=0.036  Sum_probs=34.3

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEeCC
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  123 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs~d  123 (384)
                      +.+|||.|| +.||+.|..-.+.|.++..+|.  ++.++-|..+
T Consensus       120 ~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~  160 (217)
T d2trcp_         120 VTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS  160 (217)
T ss_dssp             TCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH
T ss_pred             CCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEccc
Confidence            458999999 9999999999999999998874  5777777544

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.70  E-value=0.048  Score=40.94  Aligned_cols=28  Identities=7%  Similarity=-0.199  Sum_probs=18.5

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHH
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEE  109 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~  109 (384)
                      .+.++|.|| +.||+.| ..+|....+...
T Consensus        28 ~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~   55 (124)
T d1a8ya1          28 YEVLALLYH-EPPEDDK-ASQRQFEMEELI   55 (124)
T ss_dssp             CSEEEEEEE-CCCCSSH-HHHHHHHHHHHH
T ss_pred             CCeEEEEEE-CCCccch-hhhhHHHHHHHH
Confidence            467888999 9999843 455555444333

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=0.0027  Score=46.52  Aligned_cols=30  Identities=10%  Similarity=0.104  Sum_probs=24.0

Q ss_pred             CCeEEEEEEeCCCCcCchHhHHHHHHHHHHH
Q psy17178        270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF  300 (384)
Q Consensus       270 Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~  300 (384)
                      .-++|+.|| +.||+.|....+.|+++..+|
T Consensus        15 ~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~   44 (100)
T d1wjka_          15 ALPVLTLFT-KAPCPLCDEAKEVLQPYKDRF   44 (100)
T ss_dssp             CCCEEEEEE-CSSCHHHHHHHHHTSTTSSSS
T ss_pred             CCCEEEEEE-CCCCCChHHHHHHHHHhhhhc
Confidence            346777788 999999999888888876544

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.033  Score=43.80  Aligned_cols=43  Identities=14%  Similarity=-0.053  Sum_probs=31.1

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  310 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I  310 (384)
                      +.+..-.+|.+|+.|. -..||.|+...+.+.++.+    .++.++-+
T Consensus        19 iv~g~~~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~~----~~~~~~~~   61 (156)
T d1eeja1          19 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYL   61 (156)
T ss_dssp             EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEE
T ss_pred             eeecCCCCCEEEEEEe-CCCCHHHHHHHHHHHHhhc----cCceEEEE
Confidence            3343445788888887 8889999999998888754    45555544

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.52  E-value=0.035  Score=43.36  Aligned_cols=43  Identities=14%  Similarity=0.030  Sum_probs=30.8

Q ss_pred             eeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCCcEEEEE
Q psy17178        263 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  310 (384)
Q Consensus       263 ~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~v~vv~I  310 (384)
                      +....-.+|.+|+.|. -..||.|+...+.+.++.+    .++.++-+
T Consensus        19 ~i~g~~~ak~~I~~Fs-D~~CPyC~~~~~~l~~l~~----~~~~v~~~   61 (150)
T d1t3ba1          19 IVYPAKNEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYL   61 (150)
T ss_dssp             EEECCTTCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEE
T ss_pred             eEECCCCCCEEEEEEE-CCCCHHHHHHhHHHHHHhc----cCceEEEE
Confidence            3334446788888887 8899999999999988865    34445444

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.025  Score=41.02  Aligned_cols=30  Identities=10%  Similarity=0.104  Sum_probs=24.1

Q ss_pred             CCeEEEEEeeCCCCCCchHHHHHHHHhHHHH
Q psy17178         80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF  110 (384)
Q Consensus        80 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~  110 (384)
                      .-++|+.|+ +.|||+|..-.+.|.++..+|
T Consensus        15 ~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~   44 (100)
T d1wjka_          15 ALPVLTLFT-KAPCPLCDEAKEVLQPYKDRF   44 (100)
T ss_dssp             CCCEEEEEE-CSSCHHHHHHHHHTSTTSSSS
T ss_pred             CCCEEEEEE-CCCCCChHHHHHHHHHhhhhc
Confidence            357788888 999999999888888876544

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.05  Score=43.33  Aligned_cols=46  Identities=9%  Similarity=-0.008  Sum_probs=31.5

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCCcEEEEEe
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS  121 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~v~vi~Vs  121 (384)
                      .+....-..+.+|+.|. -..||+|++..+.+.++.++.   .+.++.+-
T Consensus        28 ~i~~G~~~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~   73 (169)
T d1v58a1          28 WLLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLL   73 (169)
T ss_dssp             CEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred             CceeCCCCCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEe
Confidence            34444434567777777 888999999999988876542   46655553

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.33  E-value=0.18  Score=37.46  Aligned_cols=32  Identities=13%  Similarity=0.144  Sum_probs=26.5

Q ss_pred             CCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhC
Q psy17178        269 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  303 (384)
Q Consensus       269 ~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~  303 (384)
                      ++|.++|.|+ +.||..|..  |...++.+++.+.
T Consensus        20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~   51 (122)
T d1g7ea_          20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASS   51 (122)
T ss_dssp             GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGC
T ss_pred             hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHH
Confidence            5689999998 999988864  7888898888764

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.27  E-value=1.3  Score=35.86  Aligned_cols=122  Identities=11%  Similarity=0.039  Sum_probs=70.8

Q ss_pred             ccccCCCCCCccEEEeeecCccceEEcccc---CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHH----------hC--
Q psy17178         49 YSKNLSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH----------QI--  113 (384)
Q Consensus        49 ~~~~~G~~aP~f~l~~~~~~~g~~~~l~~~---~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~----------~~--  113 (384)
                      .++.+|...|++...-.  .|++++.|.+.   -|++-|+.|- +.-.+  ..+...|.++.+.+.          ..  
T Consensus        15 ~~~~iG~R~~sa~V~R~--aDa~p~~L~~~~~adGrfrI~vFa-Gd~~~--~~~~~~l~~la~~L~s~~s~~~r~t~~~~   89 (201)
T d1pn0a2          15 KNCVVGTRFKSQPVVRH--SEGLWMHFGDRLVTDGRFRIIVFA-GKATD--ATQMSRIKKFAAYLDSENSVISRYTPKGA   89 (201)
T ss_dssp             TTSCTTSBCCCCEEEET--TTTEEEEGGGGCCCSSCEEEEEEE-ECTTS--HHHHHHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred             cCCCCceecCCceEEEe--cCCCEeehhccccCCCcEEEEEEe-cCCCc--cchhhHHHHHHHHHhcccchhhhccCCCC
Confidence            46679999999987543  37899999876   5899998887 44322  333444444433332          11  


Q ss_pred             ----CcEEEEEeCCCHHhH--HhhccCccccCCCCcccee-EEee------CcchhHHhhcCcccCCCCcccceeEEEEE
Q psy17178        114 ----NTEVVAASVDSHFTH--LAWVNTPRKEGGLGKLKIP-LLSD------LTHKISLDYGVYLSDQGPVRGSLLSTAIF  180 (384)
Q Consensus       114 ----~v~vi~Vs~d~~~~~--~~~~~~~~~~~~~~~~~~p-~l~D------~~~~~~~~ygv~~~~~g~~~g~~~~~~~~  180 (384)
                          -++++.|...+....  .++...+...    ...|- +..|      .++.+.+.|||-..     .|     .++
T Consensus        90 d~~~~i~~~~V~~~~~~~ie~~dlP~~~~~~----~~~~~~~~~d~~~~~~~~~~ay~~~GId~~-----~G-----~vV  155 (201)
T d1pn0a2          90 DRNSRIDVITIHSCHRDDIEMHDFPAPALHP----KWQYDFIYADCDSWHHPHPKSYQAWGVDET-----KG-----AVV  155 (201)
T ss_dssp             CTTSSEEEEEEESSCTTSCCGGGSCTTTTSC----TTCCSSEEECSCCSSSCCCCHHHHHTBCTT-----TC-----EEE
T ss_pred             CCCCcEEEEEEecCCCCccccccccccccCC----cceEEeeecccccccCCcccHHHHhCCCCC-----ce-----EEE
Confidence                268888876553222  2222211011    22222 2332      34678888998322     23     456


Q ss_pred             EEecCCCcc
Q psy17178        181 VYALTSPVN  189 (384)
Q Consensus       181 vid~~G~v~  189 (384)
                      |+-|||-|.
T Consensus       156 VVRPDgyVg  164 (201)
T d1pn0a2         156 VVRPDGYTS  164 (201)
T ss_dssp             EECTTSBEE
T ss_pred             EECCCcceE
Confidence            999999663

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.53  E-value=0.32  Score=35.98  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=25.6

Q ss_pred             CCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC
Q psy17178         79 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  114 (384)
Q Consensus        79 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~  114 (384)
                      ++|.++|.|+ +.||..|..  |.++++.+++++..
T Consensus        20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~   52 (122)
T d1g7ea_          20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSD   52 (122)
T ss_dssp             GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCS
T ss_pred             hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHH
Confidence            4578999998 999987753  77888888887643

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.35  E-value=1.1  Score=34.48  Aligned_cols=48  Identities=8%  Similarity=0.003  Sum_probs=37.2

Q ss_pred             eeeccccCCCeEEEEEEeCCCCcCchHhHHHHHHHHHHHHhCC-cEEEEE
Q psy17178        262 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAA  310 (384)
Q Consensus       262 ~~~l~d~~Gk~vvl~F~~a~~c~~C~~~~~~l~~l~~~~~~~~-v~vv~I  310 (384)
                      .+.+.+-.+++.|+.|+ ...||.|....+.+.++.+++.+.+ +.++-+
T Consensus        16 ~~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~   64 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIK   64 (172)
T ss_dssp             SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence            34566666788788887 8889999999999999999988754 455444

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.17  E-value=0.88  Score=35.18  Aligned_cols=48  Identities=8%  Similarity=0.003  Sum_probs=36.2

Q ss_pred             eEEccccCCCeEEEEEeeCCCCCCchHHHHHHHHhHHHHHhCC-cEEEEE
Q psy17178         72 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAA  120 (384)
Q Consensus        72 ~~~l~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-v~vi~V  120 (384)
                      .+.+.+-.+++.|+.|+ ...||+|.+--+.+.++.+++.+.+ +.++-+
T Consensus        16 ~~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~   64 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIK   64 (172)
T ss_dssp             SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence            45566666677788888 8889999999999999999887654 344433