Psyllid ID: psy1718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVLCPTKSRKFDRATRDIIRDRESSHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEEcccccccccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHcccccEEcccccccEEEEccccHcHHHEEEHHccccccccccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
mrpsrlkgiqtkntKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVlcptksrkfdrATRDIIRDResshfqlsqkipttfvkcesfyhnsIMLTWyklstkpqrlftptprprvsgwalcvws
Flexible Loop (DISEMBL)
mrpsrlkgiqtkntkftrdLVREVCGhapyekramellkvskdKRALKFlkrrvslyvlrsavvlcptksrkfdratRDIIRDresshfqlsqkipttfvkCESFYHNSIMLTWYKlstkpqrlftptprprvsgwalcvws
Low Complexity Region (SEG)
MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVLCPTKSRKFDRATRDIIRDRESSHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS
Disordered region (IsUnstruct)
**************KFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVLCPTKSRKFDRATRDIIRDR**SHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVW*
Disordered Region (DISOPRED)
************NTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLR**********************************IPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS
Disordered Region (DISEMBL)
MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVLCPTKSRKFDRATRDIIRDRESSHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS
Disordered Region (DISPRO)
*********QTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVLCPTKSRKFDRATRDIIRDRESSHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSAVVLCPTKSRKFDRATRDIIRDRESSHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
P49630	115	60S ribosomal protein L36	yes	N/A	0.408	0.504	0.775	5e-20
Q4PM12	110	60S ribosomal protein L36	N/A	N/A	0.401	0.518	0.684	1e-16
Q5RAZ9	105	60S ribosomal protein L36	yes	N/A	0.401	0.542	0.701	1e-16
Q9Y3U8	105	60S ribosomal protein L36	yes	N/A	0.401	0.542	0.701	1e-16
Q3T171	105	60S ribosomal protein L36	yes	N/A	0.401	0.542	0.701	1e-16
Q6Q415	105	60S ribosomal protein L36	yes	N/A	0.387	0.523	0.709	5e-16
Q8UW19	105	60S ribosomal protein L36	N/A	N/A	0.401	0.542	0.684	7e-16
Q98TF6	105	60S ribosomal protein L36	yes	N/A	0.401	0.542	0.684	7e-16
P39032	105	60S ribosomal protein L36	yes	N/A	0.401	0.542	0.684	8e-16
Q6DER2	105	60S ribosomal protein L36	yes	N/A	0.401	0.542	0.666	9e-16

>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 51/58 (87%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +R SRLK IQT++TKF RDLVREV GHAPYEKR MELLKVSKDKRALKFLKRR+  ++
Sbjct: 34 LRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHI 91

Drosophila melanogaster (taxid: 7227)

>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 50/57 (87%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          RPSR KG  +K+T+F RDL+REVCG AP+E+RAMELLKVSKDKRALKF+K+R+  ++
Sbjct: 25 RPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHL 81

Ixodes scapularis (taxid: 6945)

>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Pongo abelii (taxid: 9601)

>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Homo sapiens (taxid: 9606)

>sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Bos taurus (taxid: 9913)

>sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 47/55 (85%)

Query: 4  SRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          SR +G  TK+ KF RDL+REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 27 SRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Danio rerio (taxid: 7955)

>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R  R +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 25 RHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Lapemis hardwickii (taxid: 8781)

>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R  R +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 25 RHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Gallus gallus (taxid: 9031)

>sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R SR +G  TK+TKF RD++REVC  APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct: 25 RHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

Rattus norvegicus (taxid: 10116)

>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          R  R +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+R+  ++
Sbjct: 25 RHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHI 81

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
237761916	114	ribosomal protein L36e [Blattella german	0.408	0.508	0.844	1e-21
342905893	114	ribosomal protein L36e [Rhodnius prolixu	0.408	0.508	0.827	1e-20
70909879	110	ribosomal protein L36e [Timarcha baleari	0.408	0.527	0.810	2e-20
70909877	111	ribosomal protein L36e [Cicindela littor	0.394	0.504	0.839	3e-20
264667401	110	ribosomal protein L36 [Chrysomela tremul	0.408	0.527	0.793	4e-20
347968856	113	AGAP002921-PA [Anopheles gambiae str. PE	0.408	0.513	0.827	4e-20
70909873	112	ribosomal protein L36e [Agriotes lineatu	0.408	0.517	0.793	7e-20
215259505	143	60S ribosomal protein L36 [Culex tarsali	0.408	0.405	0.810	9e-20
342356403	120	ribosomal protein L36 [Heliconius melpom	0.408	0.483	0.793	1e-19
315115415	122	ribosomal protein L36 [Euphydryas aurini	0.408	0.475	0.793	1e-19

>gi|237761916|emb|CAR94544.1| ribosomal protein L36e [Blattella germanica]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RPSRLKGIQTK+TKF RDL+REVCGHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 33 IRPSRLKGIQTKHTKFVRDLIREVCGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 90

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342905893|gb|AEL79230.1| ribosomal protein L36e [Rhodnius prolixus]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 55/58 (94%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RPSRLKG+QTK+TKF RDLVREVCG+APYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 33 IRPSRLKGVQTKHTKFVRDLVREVCGNAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 90

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909879|emb|CAJ17426.1| ribosomal protein L36e [Timarcha balearica]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 54/58 (93%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RP+RLKGIQTK+TKF RDL+REV GHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 29 VRPARLKGIQTKHTKFVRDLIREVVGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 86

Source: Timarcha balearica

Species: Timarcha balearica

Genus: Timarcha

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909877|emb|CAJ17425.1| ribosomal protein L36e [Cicindela littoralis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 53/56 (94%)

Query: 3  PSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          PSRLKGIQTK+TKF R+L+REVCGHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 32 PSRLKGIQTKHTKFVRELIREVCGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 87

Source: Cicindela littoralis

Species: Cicindela littoralis

Genus: Cicindela

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667401|gb|ACY71286.1| ribosomal protein L36 [Chrysomela tremula]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 54/58 (93%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RP+RLKGIQTK+TKF RD++REV GHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 29 VRPARLKGIQTKHTKFVRDIIREVVGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 86

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968856|ref|XP_311984.4| AGAP002921-PA [Anopheles gambiae str. PEST] gi|347968858|ref|XP_003436309.1| AGAP002921-PB [Anopheles gambiae str. PEST] gi|333467808|gb|EAA08114.5| AGAP002921-PA [Anopheles gambiae str. PEST] gi|333467809|gb|EGK96704.1| AGAP002921-PB [Anopheles gambiae str. PEST]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RPSRLKGIQTK+TKF RDLVREV GHAPYEKR MELLKVSKDKRALKFLKRR+  ++
Sbjct: 34 IRPSRLKGIQTKHTKFVRDLVREVVGHAPYEKRGMELLKVSKDKRALKFLKRRLGTHI 91

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909873|emb|CAJ17423.1| ribosomal protein L36e [Agriotes lineatus]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 54/58 (93%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RP+RLKGIQTK+TKF R+L+REV GHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 31 IRPARLKGIQTKHTKFVRELIREVVGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 88

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215259505|gb|ACJ64244.1| 60S ribosomal protein L36 [Culex tarsalis]

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 52/58 (89%)

Query: 1   MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
           +RPSR KGIQTK+TKF RDLVREV GHAPYEKR MELLKVSKDKRALKFLKRR+  ++
Sbjct: 64  IRPSRTKGIQTKHTKFVRDLVREVVGHAPYEKRGMELLKVSKDKRALKFLKRRLGTHI 121

Source: Culex tarsalis

Species: Culex tarsalis

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342356403|gb|AEL28860.1| ribosomal protein L36 [Heliconius melpomene cythera]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 54/58 (93%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RP+RLKG+QTK++KF RDLVREV GHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 34 IRPARLKGLQTKHSKFVRDLVREVVGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 91

Source: Heliconius melpomene cythera

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115415|gb|ADT80680.1| ribosomal protein L36 [Euphydryas aurinia]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 54/58 (93%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
          +RP+RLKG+QTK++KF RDLVREV GHAPYEKRAMELLKVSKDKRALKFLKRR+  ++
Sbjct: 34 IRPARLKGLQTKHSKFVRDLVREVVGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHI 91

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
FB|FBgn0002579	115	RpL36 "Ribosomal protein L36"	0.408	0.504	0.775	4e-19
MGI|MGI:3645343	104	Gm5745 "predicted gene 5745" [	0.401	0.548	0.701	2e-17
RGD|1563135	105	RGD1563135 "hypothetical gene	0.401	0.542	0.701	2.5e-17
RGD|2325111	105	LOC100359616 "ribosomal protei	0.401	0.542	0.701	2.5e-17
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.401	0.542	0.701	3.2e-17
UNIPROTKB|Q9Y3U8	105	RPL36 "60S ribosomal protein L	0.401	0.542	0.701	3.2e-17
UNIPROTKB|F2Z5K6	105	RPL36 "Uncharacterized protein	0.401	0.542	0.701	3.2e-17
UNIPROTKB|G3MYF8	105	RPL36 "60S ribosomal protein L	0.401	0.542	0.701	4.1e-17
RGD|2319728	104	LOC100361644 "ribosomal protei	0.401	0.548	0.684	6.7e-17
RGD|2320881	104	LOC100361079 "ribosomal protei	0.401	0.548	0.684	6.7e-17

FB|FBgn0002579 RpL36 "Ribosomal protein L36" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 45/58 (77%), Positives = 51/58 (87%)

Query:     1 MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             +R SRLK IQT++TKF RDLVREV GHAPYEKR MELLKVSKDKRALKFLKRR+  ++
Sbjct:    34 LRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHI 91

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

MGI|MGI:3645343 Gm5745 "predicted gene 5745" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRRRGCLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1563135 RGD1563135 "hypothetical gene supported by NM_022504" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRCRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2325111 LOC100359616 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRCRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9Y3U8 RPL36 "60S ribosomal protein L36" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5K6 RPL36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G3MYF8 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APYE+RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRHRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APY++RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2320881 LOC100361079 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query:     2 RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYV 58
             R SR +G  TK+TKF RD++REVCG APY++RAMELLKVSKDKRALKF+K+RV  ++
Sbjct:    25 RHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIKKRVGTHI 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q415	RL36_DANRE	No assigned EC number	0.7090	0.3873	0.5238	yes	N/A
Q3T171	RL36_BOVIN	No assigned EC number	0.7017	0.4014	0.5428	yes	N/A
Q92365	RL36A_SCHPO	No assigned EC number	0.5740	0.3802	0.5454	yes	N/A
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.7017	0.4014	0.5428	yes	N/A
P39032	RL36_RAT	No assigned EC number	0.6842	0.4014	0.5428	yes	N/A
Q6DER2	RL36_XENTR	No assigned EC number	0.6666	0.4014	0.5428	yes	N/A
P49181	RL36_CAEEL	No assigned EC number	0.5892	0.3943	0.5384	yes	N/A
Q98TF6	RL36_CHICK	No assigned EC number	0.6842	0.4014	0.5428	yes	N/A
P49630	RL36_DROME	No assigned EC number	0.7758	0.4084	0.5043	yes	N/A
Q5RAZ9	RL36_PONAB	No assigned EC number	0.7017	0.4014	0.5428	yes	N/A
O94658	RL36B_SCHPO	No assigned EC number	0.5740	0.3802	0.5454	yes	N/A
Q9LZ57	RL363_ARATH	No assigned EC number	0.5714	0.3943	0.5185	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	4e-26
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	2e-15
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	3e-11

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score = 93.8 bits (234), Expect = 4e-26
 Identities = 37/53 (69%), Positives = 43/53 (81%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRV 54
          RPSR KG  +K TKF RD++REV G APYEKR +ELLKV KDKRALKF K+R+
Sbjct: 20 RPSRRKGKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGKDKRALKFAKKRL 72

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score = 66.6 bits (163), Expect = 2e-15
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 1  MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRR 53
            PS+ KG+ +K  +  +D++REVCG +PYE+R +ELLKV KDKRALK+ K+R
Sbjct: 22 PSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKR 74

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRV 54
          RPSR KG  +K T+F R +VRE+ G +PYE+R +EL++ S+DKRA K  K+R+
Sbjct: 25 RPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRL 77

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PTZ00196	98	60S ribosomal protein L36; Provisional	99.97
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	99.97
KOG3452|consensus	102		99.96
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	99.85

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=99.97  E-value=6.9e-33  Score=204.08  Aligned_cols=61  Identities=48%  Similarity=0.834  Sum_probs=59.4

Q ss_pred             CCcCcccCCCCcchHHHHHHhhhhccccchhHhHHHHhhccchhhHHHHHHhhhhceeecc
Q psy1718           1 MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRS   61 (142)
Q Consensus         1 ~R~SrrKG~lTKrtKfVRdiIREV~GFAPYERRaMELLKVSKDKRALKFaKKRLGTHiRr~   61 (142)
                      +|||+++|.+|||++||||||+|||||||||+|+|||||+|+||+||||+|||||||+||-
T Consensus        22 ~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~RaK   82 (98)
T PTZ00196         22 PSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRAK   82 (98)
T ss_pred             CCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999984

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=2.5e-32  Score=200.54  Aligned_cols=61  Identities=69%  Similarity=0.985  Sum_probs=56.8

Q ss_pred             CCcCcccCCCCcchHHHHHHhhhhccccchhHhHHHHhhccchhhHHHHHHhhhhceeecc
Q psy1718           1 MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRS   61 (142)
Q Consensus         1 ~R~SrrKG~lTKrtKfVRdiIREV~GFAPYERRaMELLKVSKDKRALKFaKKRLGTHiRr~   61 (142)
                      +|||+++|.+|||++||||||+|||||||||+|+||||++|+||+||||+|||||||+||-
T Consensus        22 ~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~RAK   82 (98)
T PF01158_consen   22 PRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRAK   82 (98)
T ss_dssp             --STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHH
T ss_pred             CCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999973

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>KOG3452|consensus

Probab=99.96  E-value=3.1e-30  Score=191.91  Aligned_cols=61  Identities=64%  Similarity=0.868  Sum_probs=59.6

Q ss_pred             CCcCcccCCCCcchHHHHHHhhhhccccchhHhHHHHhhccchhhHHHHHHhhhhceeecc
Q psy1718           1 MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRS   61 (142)
Q Consensus         1 ~R~SrrKG~lTKrtKfVRdiIREV~GFAPYERRaMELLKVSKDKRALKFaKKRLGTHiRr~   61 (142)
                      ||+|+++|.+|||++||++||+|||||||||+|+||||++|+||+|+||+|||||||+||-
T Consensus        24 pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RAk   84 (102)
T KOG3452|consen   24 PRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRAK   84 (102)
T ss_pred             CCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999985

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.7e-22  Score=148.37  Aligned_cols=62  Identities=47%  Similarity=0.727  Sum_probs=60.2

Q ss_pred             CCcCcccCCCCcchHHHHHHhhhhccccchhHhHHHHhhccchhhHHHHHHhhhhceeecce
Q psy1718           1 MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLYVLRSA   62 (142)
Q Consensus         1 ~R~SrrKG~lTKrtKfVRdiIREV~GFAPYERRaMELLKVSKDKRALKFaKKRLGTHiRr~~   62 (142)
                      .|||+++|.++++++||+++++|++||+|||+++||||+.|.||+|.|.+|||||+|+||.+
T Consensus        24 ~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAka   85 (97)
T COG5051          24 ERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAKA   85 (97)
T ss_pred             CCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		2e-12
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		2e-07
3zf7_m	109	High-resolution Cryo-electron Microscopy Structure		9e-05
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-04

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLY 57
          RPS  KG  TK   F R+L+REV G APYEKR  ELLKV KDKRALK  KR++  +
Sbjct: 28 RPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 83

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 7  KGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVSLY 57
          KG  +  TKF R LVRE+ G +PYE+R ++L++ S +KRA K  K+R+  +
Sbjct: 30 KGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSF 80

>pdb|3ZF7|MM Chain m, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 109

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 12 KNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRVS 55
          K  +  + ++ ++ G +P E+R  ELL+V KDKRALKF K+R+ 
Sbjct: 43 KKLRAVKAIISDLVGFSPMERRVQELLRVGKDKRALKFCKKRLG 86

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 7  KGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKV--SKD-KRALKFLKRRVSLY 57
          KG   K     R ++REV G APYEKR +EL+K   +KD K+A K  ++R+  +
Sbjct: 31 KGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTH 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	2e-19
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	1e-18
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	6e-18

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 72.7 bits (178), Expect = 6e-18
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2  RPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSK---DKRALKFLKRRV 54
             + KG   K     R ++REV G APYEKR +EL+K       K+A K  ++R+
Sbjct: 26 SAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	99.97
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	99.97
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	99.97

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=99.97  E-value=4.8e-33  Score=205.96  Aligned_cols=60  Identities=35%  Similarity=0.529  Sum_probs=58.9

Q ss_pred             CCcCcccCCCCcchHHHHHHhhhhccccchhHhHHHHhhccc---hhhHHHHHHhhhhceeec
Q psy1718           1 MRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSK---DKRALKFLKRRVSLYVLR   60 (142)
Q Consensus         1 ~R~SrrKG~lTKrtKfVRdiIREV~GFAPYERRaMELLKVSK---DKRALKFaKKRLGTHiRr   60 (142)
                      +|||+++|.+|||++||||||+|||||||||+|+|||||+|+   |||||||+|||||||+||
T Consensus        25 ~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RA   87 (104)
T 4a18_Q           25 HSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRA   87 (104)
T ss_dssp             CCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHH
T ss_pred             CCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHH
Confidence            589999999999999999999999999999999999999999   999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00